
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS168_5
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS168_5.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    48        21 - 68          4.92    27.67
  LONGEST_CONTINUOUS_SEGMENT:    48        22 - 69          4.98    27.66
  LCS_AVERAGE:     34.85

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         2 - 27          1.86    21.59
  LCS_AVERAGE:     17.42

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         3 - 26          0.33    21.29
  LCS_AVERAGE:     13.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      3    3   29     0    0   12   12   14   16   18   20   24   32   34   35   37   40   42   44   48   52   53   55 
LCS_GDT     S       2     S       2      3   26   29     3    6    9   13   14   22   24   29   37   39   41   41   41   42   45   47   49   52   56   60 
LCS_GDT     F       3     F       3     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   45   48   51   56   58   61 
LCS_GDT     I       4     I       4     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     E       5     E       5     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   45   47   51   55   58   60 
LCS_GDT     K       6     K       6     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     M       7     M       7     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     I       8     I       8     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     G       9     G       9     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     S      10     S      10     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     L      11     L      11     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     N      12     N      12     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     D      13     D      13     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     K      14     K      14     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     R      15     R      15     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   45   48   51   56   58   61 
LCS_GDT     E      16     E      16     24   26   29    23   24   24   32   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     W      17     W      17     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     K      18     K      18     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   42   44   48   55   57   59   61 
LCS_GDT     A      19     A      19     24   26   29    23   24   24   33   34   36   37   38   38   39   41   41   41   42   47   52   55   58   61   63 
LCS_GDT     M      20     M      20     24   26   46    23   24   24   33   34   36   37   38   38   39   41   41   41   44   48   52   55   59   62   64 
LCS_GDT     E      21     E      21     24   26   48    23   24   24   33   34   36   37   38   38   39   41   41   41   49   51   54   57   60   62   64 
LCS_GDT     A      22     A      22     24   26   48    23   24   24   33   34   36   37   38   38   39   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     R      23     R      23     24   26   48    23   24   24   33   34   36   37   38   38   39   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     A      24     A      24     24   26   48    23   24   24   33   34   36   37   38   38   39   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     K      25     K      25     24   26   48    23   24   24   33   34   36   37   38   38   39   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     A      26     A      26     24   26   48    20   24   24   33   34   36   37   38   38   39   41   43   45   48   52   54   58   60   61   63 
LCS_GDT     L      27     L      27      4   26   48     3    3    8   12   18   19   24   30   36   38   38   41   44   48   49   52   53   53   54   56 
LCS_GDT     P      28     P      28      4   22   48     3    3    8   12   18   21   23   23   28   31   38   43   45   48   51   52   53   53   55   58 
LCS_GDT     K      29     K      29     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   61   64 
LCS_GDT     E      30     E      30     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   61   64 
LCS_GDT     Y      31     Y      31     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     H      32     H      32     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     H      33     H      33     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     A      34     A      34     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     Y      35     Y      35     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     K      36     K      36     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     A      37     A      37     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     I      38     I      38     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     Q      39     Q      39     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     K      40     K      40     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     Y      41     Y      41     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     M      42     M      42     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     W      43     W      43     16   22   48    15   16   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     T      44     T      44     16   22   48     3   15   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     S      45     S      45      5   22   48     3    3    6    8   11   13   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     G      46     G      46      5   22   48     3    4   15   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     G      47     G      47      4   22   48     3    3   18   19   20   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     P      48     P      48      3   21   48     3    3    6    9   19   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     T      49     T      49      3   21   48     3    3    6    9   11   17   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     D      50     D      50     20   22   48     3    3    7   18   21   21   22   23   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     W      51     W      51     20   22   48     8   12   19   20   21   21   22   23   31   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     Q      52     Q      52     20   22   48    12   18   19   20   21   21   22   23   26   37   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     D      53     D      53     20   22   48    10   18   19   20   21   21   22   23   25   29   39   43   48   49   52   54   58   60   62   64 
LCS_GDT     T      54     T      54     20   22   48     8   18   19   20   21   21   22   23   31   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     K      55     K      55     20   22   48     8   18   19   20   21   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     R      56     R      56     20   22   48    12   18   19   20   21   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     I      57     I      57     20   22   48    11   18   19   20   21   21   22   23   31   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     F      58     F      58     20   22   48    12   18   19   20   21   21   22   23   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     G      59     G      59     20   22   48    12   18   19   20   21   21   23   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     G      60     G      60     20   22   48    12   18   19   20   21   21   26   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     I      61     I      61     20   22   48    12   18   19   20   25   25   26   26   27   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     L      62     L      62     20   22   48    12   18   19   20   21   21   22   23   27   37   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     D      63     D      63     20   22   48    11   18   19   20   21   21   22   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     L      64     L      64     20   22   48    12   18   19   20   21   21   22   27   32   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     F      65     F      65     20   22   48    12   18   19   20   21   21   22   23   25   29   32   44   48   49   52   54   58   60   62   64 
LCS_GDT     E      66     E      66     20   22   48    12   18   19   20   21   21   22   23   25   29   36   44   48   49   52   54   58   60   62   64 
LCS_GDT     E      67     E      67     20   22   48    12   18   19   20   21   21   22   23   30   38   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     G      68     G      68     20   22   48    12   18   19   20   21   21   22   23   25   29   40   44   48   49   52   54   58   60   62   64 
LCS_GDT     A      69     A      69     20   22   48    11   18   19   20   21   21   22   23   25   29   32   33   39   48   52   54   58   60   62   64 
LCS_GDT     A      70     A      70     20   22   43     9   16   19   20   21   21   22   23   25   29   32   38   45   49   52   54   58   60   62   64 
LCS_GDT     E      71     E      71      3   22   35     1    3    4    6   13   17   18   22   23   29   32   36   42   48   52   54   58   60   62   64 
LCS_GDT     G      72     G      72      3    6   32     3    3    4    6    6   10   11   15   19   22   27   32   38   42   47   51   55   59   62   64 
LCS_GDT     K      73     K      73      3    6   32     3    3    4    6    7   10   11   15   19   25   31   36   39   41   45   51   55   59   62   64 
LCS_GDT     K      74     K      74      3    6   32     3    3    4    6    6    8   11   14   18   22   26   35   40   43   46   48   51   56   58   61 
LCS_GDT     V      75     V      75      4    6   32     4    4    4    6    7   10   11   16   22   28   32   36   40   43   50   54   58   60   62   64 
LCS_GDT     T      76     T      76      4    5   32     4    4    4    5    7   10   13   16   19   22   28   36   41   46   51   54   58   60   62   64 
LCS_GDT     D      77     D      77      4    5   32     4    4    4    5    7   10   13   16   19   22   28   36   40   46   50   54   58   60   62   64 
LCS_GDT     L      78     L      78      4    6   33     4    4    4    5    7   11   17   19   24   28   31   36   41   46   51   54   58   60   62   64 
LCS_GDT     T      79     T      79      4    6   33     3    3    5    6    7   16   17   20   27   29   34   36   41   45   50   54   58   60   62   64 
LCS_GDT     G      80     G      80      4    6   33     3    4    7    9   25   25   30   33   36   38   41   41   41   43   46   52   55   59   62   64 
LCS_GDT     E      81     E      81      4   15   33     3    4    5    5    7   13   17   25   35   38   41   41   41   43   46   52   55   59   62   64 
LCS_GDT     D      82     D      82     11   15   33    10   11   12   16   27   36   37   38   38   39   41   41   41   45   50   54   56   60   62   64 
LCS_GDT     V      83     V      83     11   15   33    10   11   12   33   34   36   37   38   38   39   41   41   41   46   50   54   58   60   62   64 
LCS_GDT     A      84     A      84     11   15   33    10   11   12   33   34   36   37   38   38   39   41   41   41   46   51   54   58   60   62   64 
LCS_GDT     A      85     A      85     11   15   33    10   11   17   33   34   36   37   38   38   39   41   43   48   49   52   54   58   60   62   64 
LCS_GDT     F      86     F      86     11   15   33    10   16   22   33   34   36   37   38   38   39   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     C      87     C      87     11   15   33    10   11   22   33   34   36   37   38   38   39   43   44   48   49   52   54   58   60   62   64 
LCS_GDT     D      88     D      88     11   15   33    10   12   22   33   34   36   37   38   38   39   41   43   48   49   52   53   55   58   60   62 
LCS_GDT     E      89     E      89     11   15   33    10   12   22   33   34   36   37   38   38   39   43   44   48   49   51   53   53   57   59   62 
LCS_GDT     L      90     L      90     11   15   33    10   12   22   33   34   36   37   38   38   39   41   41   44   48   51   53   53   56   58   61 
LCS_GDT     M      91     M      91     11   15   33    10   12   22   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     K      92     K      92     11   15   33     6   12   17   33   34   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     D      93     D      93      4   15   33     4    4    6   13   21   32   36   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     T      94     T      94      4   15   33     4    5   10   13   24   35   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     K      95     K      95      3   16   33     3    4    9   19   32   36   37   38   38   39   41   41   41   43   46   48   51   56   58   61 
LCS_GDT     T      96     T      96     15   16   33    13   14   14   14   15   16   20   25   28   33   36   40   41   43   46   48   51   56   58   61 
LCS_GDT     W      97     W      97     15   16   33    13   14   14   14   15   16   18   21   23   25   31   36   40   43   46   48   51   56   58   61 
LCS_GDT     M      98     M      98     15   16   33    13   14   14   14   15   16   18   21   23   27   31   36   40   43   46   48   51   56   58   61 
LCS_GDT     D      99     D      99     15   16   33    13   14   14   14   15   16   18   21   26   33   36   38   40   43   46   48   51   56   58   61 
LCS_GDT     K     100     K     100     15   16   33    13   14   14   14   15   16   18   21   24   29   34   36   40   43   46   48   51   56   58   61 
LCS_GDT     Y     101     Y     101     15   16   33    13   14   14   14   15   16   18   21   23   24   28   35   39   41   46   48   51   56   58   61 
LCS_GDT     R     102     R     102     15   16   33    13   14   14   14   15   16   18   21   23   24   27   32   38   41   46   48   51   56   58   61 
LCS_GDT     T     103     T     103     15   16   33    13   14   14   14   15   16   18   21   23   28   32   36   40   43   46   48   51   56   58   61 
LCS_GDT     K     104     K     104     15   16   33    13   14   14   14   15   16   18   21   23   27   31   36   39   42   46   48   51   56   58   61 
LCS_GDT     L     105     L     105     15   16   33    13   14   14   14   15   16   18   21   23   24   26   32   35   38   42   46   49   55   58   61 
LCS_GDT     N     106     N     106     15   16   33    13   14   14   14   15   16   18   21   23   24   26   32   35   38   42   46   51   56   58   61 
LCS_GDT     D     107     D     107     15   16   33    13   14   14   14   15   16   18   21   23   27   31   35   39   41   46   48   51   56   58   61 
LCS_GDT     S     108     S     108     15   16   33    13   14   14   14   15   16   18   21   23   24   27   32   35   40   43   46   49   55   58   61 
LCS_GDT     I     109     I     109     15   16   33     7   14   14   14   15   16   18   21   23   24   26   32   35   36   39   46   47   51   53   57 
LCS_GDT     G     110     G     110     15   16   33     4    4    4   14   15   16   17   21   23   24   26   32   34   36   38   46   47   51   53   57 
LCS_GDT     R     111     R     111      4   16   33     4    4    4    5    8   10   15   16   17   17   19   24   30   32   35   35   37   41   49   51 
LCS_GDT     D     112     D     112      4    6   30     4    4    4    4    7    9   12   16   17   17   23   27   30   32   35   35   37   39   40   41 
LCS_AVERAGE  LCS_A:  21.91  (  13.48   17.42   34.85 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     23     24     24     33     34     36     37     38     38     39     43     44     48     49     52     54     58     60     62     64 
GDT PERCENT_CA  20.54  21.43  21.43  29.46  30.36  32.14  33.04  33.93  33.93  34.82  38.39  39.29  42.86  43.75  46.43  48.21  51.79  53.57  55.36  57.14
GDT RMS_LOCAL    0.31   0.33   0.33   1.45   1.47   1.63   1.73   1.84   1.84   2.17   4.07   4.20   4.54   4.59   5.15   5.60   5.95   6.10   6.46   6.59
GDT RMS_ALL_CA  21.25  21.29  21.29  17.56  17.57  17.45  17.41  17.36  17.36  17.46  27.72  27.66  27.45  27.49  27.40  27.31  27.60  27.58  26.98  27.27

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         10.851
LGA    S       2      S       2          6.576
LGA    F       3      F       3          1.462
LGA    I       4      I       4          2.689
LGA    E       5      E       5          2.243
LGA    K       6      K       6          1.173
LGA    M       7      M       7          2.136
LGA    I       8      I       8          2.856
LGA    G       9      G       9          1.891
LGA    S      10      S      10          1.217
LGA    L      11      L      11          2.332
LGA    N      12      N      12          2.577
LGA    D      13      D      13          1.523
LGA    K      14      K      14          1.645
LGA    R      15      R      15          2.479
LGA    E      16      E      16          2.273
LGA    W      17      W      17          1.274
LGA    K      18      K      18          2.019
LGA    A      19      A      19          2.505
LGA    M      20      M      20          1.602
LGA    E      21      E      21          1.654
LGA    A      22      A      22          2.351
LGA    R      23      R      23          1.720
LGA    A      24      A      24          1.437
LGA    K      25      K      25          2.359
LGA    A      26      A      26          2.543
LGA    L      27      L      27          7.517
LGA    P      28      P      28         14.497
LGA    K      29      K      29         18.645
LGA    E      30      E      30         18.999
LGA    Y      31      Y      31         11.483
LGA    H      32      H      32         11.543
LGA    H      33      H      33         17.593
LGA    A      34      A      34         13.172
LGA    Y      35      Y      35          9.809
LGA    K      36      K      36         17.250
LGA    A      37      A      37         18.900
LGA    I      38      I      38         14.256
LGA    Q      39      Q      39         19.140
LGA    K      40      K      40         24.921
LGA    Y      41      Y      41         22.293
LGA    M      42      M      42         22.657
LGA    W      43      W      43         29.498
LGA    T      44      T      44         31.518
LGA    S      45      S      45         29.823
LGA    G      46      G      46         24.166
LGA    G      47      G      47         25.938
LGA    P      48      P      48         24.202
LGA    T      49      T      49         29.536
LGA    D      50      D      50         30.995
LGA    W      51      W      51         26.698
LGA    Q      52      Q      52         25.976
LGA    D      53      D      53         19.915
LGA    T      54      T      54         17.355
LGA    K      55      K      55         18.536
LGA    R      56      R      56         16.561
LGA    I      57      I      57         10.369
LGA    F      58      F      58          9.911
LGA    G      59      G      59         14.103
LGA    G      60      G      60         12.051
LGA    I      61      I      61          9.215
LGA    L      62      L      62         12.799
LGA    D      63      D      63         18.154
LGA    L      64      L      64         17.521
LGA    F      65      F      65         17.543
LGA    E      66      E      66         22.177
LGA    E      67      E      67         26.416
LGA    G      68      G      68         26.609
LGA    A      69      A      69         27.243
LGA    A      70      A      70         32.629
LGA    E      71      E      71         33.467
LGA    G      72      G      72         29.676
LGA    K      73      K      73         24.621
LGA    K      74      K      74         17.582
LGA    V      75      V      75         14.999
LGA    T      76      T      76         16.522
LGA    D      77      D      77         19.185
LGA    L      78      L      78         14.682
LGA    T      79      T      79         11.251
LGA    G      80      G      80          7.173
LGA    E      81      E      81          6.331
LGA    D      82      D      82          2.901
LGA    V      83      V      83          1.555
LGA    A      84      A      84          1.668
LGA    A      85      A      85          1.243
LGA    F      86      F      86          0.628
LGA    C      87      C      87          0.767
LGA    D      88      D      88          0.794
LGA    E      89      E      89          1.251
LGA    L      90      L      90          1.460
LGA    M      91      M      91          1.805
LGA    K      92      K      92          1.807
LGA    D      93      D      93          3.829
LGA    T      94      T      94          3.200
LGA    K      95      K      95          2.893
LGA    T      96      T      96          9.618
LGA    W      97      W      97         13.977
LGA    M      98      M      98         13.799
LGA    D      99      D      99         11.486
LGA    K     100      K     100         15.622
LGA    Y     101      Y     101         19.386
LGA    R     102      R     102         18.013
LGA    T     103      T     103         17.565
LGA    K     104      K     104         22.873
LGA    L     105      L     105         24.876
LGA    N     106      N     106         22.821
LGA    D     107      D     107         24.376
LGA    S     108      S     108         29.063
LGA    I     109      I     109         29.572
LGA    G     110      G     110         29.952
LGA    R     111      R     111         35.887
LGA    D     112      D     112         39.341

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     38    1.84    33.259    29.135     1.959

LGA_LOCAL      RMSD =  1.840  Number of atoms =   38  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.260  Number of atoms =  112 
Std_ALL_ATOMS  RMSD = 14.577  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.640016 * X  +   0.492111 * Y  +   0.590091 * Z  +  19.021765
  Y_new =   0.738442 * X  +   0.181721 * Y  +   0.649370 * Z  +  25.431236
  Z_new =   0.212330 * X  +   0.851355 * Y  +  -0.479699 * Z  +   2.175992 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.083910   -1.057683  [ DEG:   119.3992    -60.6008 ]
  Theta =  -0.213959   -2.927634  [ DEG:   -12.2590   -167.7410 ]
  Phi   =   2.284913   -0.856680  [ DEG:   130.9158    -49.0842 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS168_5                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS168_5.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   38   1.84  29.135    14.58
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS168_5
PFRMAT TS
TARGET T0283
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      35.769   8.386  17.315  1.00 25.00           C
ATOM      2  CA  SER     2      32.047   8.794  18.116  1.00 25.00           C
ATOM      3  CA  PHE     3      29.507   7.918  20.801  1.00 25.00           C
ATOM      4  CA  ILE     4      26.591   6.196  19.013  1.00 25.00           C
ATOM      5  CA  GLU     5      24.628   9.484  18.996  1.00 25.00           C
ATOM      6  CA  LYS     6      27.663  11.317  17.549  1.00 25.00           C
ATOM      7  CA  MET     7      28.009   8.644  14.826  1.00 25.00           C
ATOM      8  CA  ILE     8      24.290   8.993  13.978  1.00 25.00           C
ATOM      9  CA  GLY     9      24.673  12.797  13.753  1.00 25.00           C
ATOM     10  CA  SER    10      27.696  12.381  11.438  1.00 25.00           C
ATOM     11  CA  LEU    11      25.700   9.975   9.225  1.00 25.00           C
ATOM     12  CA  ASN    12      22.808  12.479   9.067  1.00 25.00           C
ATOM     13  CA  ASP    13      25.245  15.269   8.092  1.00 25.00           C
ATOM     14  CA  LYS    14      26.728  13.048   5.347  1.00 25.00           C
ATOM     15  CA  ARG    15      23.212  12.283   4.033  1.00 25.00           C
ATOM     16  CA  GLU    16      22.387  16.023   3.992  1.00 25.00           C
ATOM     17  CA  TRP    17      25.626  16.742   2.079  1.00 25.00           C
ATOM     18  CA  LYS    18      24.763  14.006  -0.458  1.00 25.00           C
ATOM     19  CA  ALA    19      21.261  15.490  -0.906  1.00 25.00           C
ATOM     20  CA  MET    20      22.777  18.964  -1.455  1.00 25.00           C
ATOM     21  CA  GLU    21      25.189  17.527  -4.058  1.00 25.00           C
ATOM     22  CA  ALA    22      22.273  15.805  -5.847  1.00 25.00           C
ATOM     23  CA  ARG    23      20.310  19.093  -5.863  1.00 25.00           C
ATOM     24  CA  ALA    24      23.346  20.926  -7.311  1.00 25.00           C
ATOM     25  CA  LYS    25      23.691  18.254 -10.034  1.00 25.00           C
ATOM     26  CA  ALA    26      19.973  18.603 -10.882  1.00 25.00           C
ATOM     27  CA  LEU    27      16.987  16.974  -9.100  1.00 25.00           C
ATOM     28  CA  PRO    28      17.089  15.272  -5.683  1.00 25.00           C
ATOM     29  CA  LYS    29      16.252  16.589  -2.217  1.00 25.00           C
ATOM     30  CA  GLU    30      15.511  19.765  -0.211  1.00 25.00           C
ATOM     31  CA  TYR    31      17.374  21.871  -2.810  1.00 25.00           C
ATOM     32  CA  HIS    32      15.371  20.215  -5.624  1.00 25.00           C
ATOM     33  CA  HIS    33      12.106  20.937  -3.757  1.00 25.00           C
ATOM     34  CA  ALA    34      13.145  24.595  -3.302  1.00 25.00           C
ATOM     35  CA  TYR    35      13.952  24.855  -7.037  1.00 25.00           C
ATOM     36  CA  LYS    36      10.536  23.360  -7.905  1.00 25.00           C
ATOM     37  CA  ALA    37       8.818  25.872  -5.579  1.00 25.00           C
ATOM     38  CA  ILE    38      10.734  28.748  -7.229  1.00 25.00           C
ATOM     39  CA  GLN    39       9.689  27.490 -10.692  1.00 25.00           C
ATOM     40  CA  LYS    40       6.039  27.303  -9.549  1.00 25.00           C
ATOM     41  CA  TYR    41       6.254  30.878  -8.193  1.00 25.00           C
ATOM     42  CA  MET    42       7.733  32.076 -11.518  1.00 25.00           C
ATOM     43  CA  TRP    43       4.906  30.338 -13.429  1.00 25.00           C
ATOM     44  CA  THR    44       2.312  31.997 -11.151  1.00 25.00           C
ATOM     45  CA  SER    45       2.653  34.194  -8.123  1.00 25.00           C
ATOM     46  CA  GLY    46       5.828  36.074  -8.882  1.00 25.00           C
ATOM     47  CA  GLY    47       6.932  37.092 -12.379  1.00 25.00           C
ATOM     48  CA  PRO    48      10.472  36.514 -11.106  1.00 25.00           C
ATOM     49  CA  THR    49      12.158  35.120 -14.158  1.00 25.00           C
ATOM     50  CA  ASP    50      12.740  31.903 -16.185  1.00 25.00           C
ATOM     51  CA  TRP    51      15.475  29.640 -14.746  1.00 25.00           C
ATOM     52  CA  GLN    52      16.568  32.825 -12.920  1.00 25.00           C
ATOM     53  CA  ASP    53      15.515  31.296  -9.571  1.00 25.00           C
ATOM     54  CA  THR    54      17.496  28.118 -10.371  1.00 25.00           C
ATOM     55  CA  LYS    55      20.569  30.225 -11.255  1.00 25.00           C
ATOM     56  CA  ARG    56      20.229  32.146  -7.959  1.00 25.00           C
ATOM     57  CA  ILE    57      19.982  28.846  -6.032  1.00 25.00           C
ATOM     58  CA  PHE    58      23.116  27.546  -7.809  1.00 25.00           C
ATOM     59  CA  GLY    59      24.982  30.773  -6.930  1.00 25.00           C
ATOM     60  CA  GLY    60      23.908  30.427  -3.271  1.00 25.00           C
ATOM     61  CA  ILE    61      25.123  26.795  -3.232  1.00 25.00           C
ATOM     62  CA  LEU    62      28.483  27.877  -4.717  1.00 25.00           C
ATOM     63  CA  ASP    63      28.810  30.607  -2.052  1.00 25.00           C
ATOM     64  CA  LEU    64      28.043  28.051   0.695  1.00 25.00           C
ATOM     65  CA  PHE    65      30.691  25.683  -0.736  1.00 25.00           C
ATOM     66  CA  GLU    66      33.245  28.536  -0.798  1.00 25.00           C
ATOM     67  CA  GLU    67      32.419  29.388   2.843  1.00 25.00           C
ATOM     68  CA  GLY    68      32.859  25.713   3.829  1.00 25.00           C
ATOM     69  CA  ALA    69      36.241  25.612   2.033  1.00 25.00           C
ATOM     70  CA  ALA    70      37.334  28.797   3.859  1.00 25.00           C
ATOM     71  CA  GLU    71      36.944  32.061   1.860  1.00 25.00           C
ATOM     72  CA  GLY    72      34.978  34.760   0.097  1.00 25.00           C
ATOM     73  CA  LYS    73      32.842  35.675  -2.983  1.00 25.00           C
ATOM     74  CA  LYS    74      29.377  35.377  -4.603  1.00 25.00           C
ATOM     75  CA  VAL    75      27.319  35.782  -1.497  1.00 25.00           C
ATOM     76  CA  THR    76      26.045  36.857   1.951  1.00 25.00           C
ATOM     77  CA  ASP    77      25.638  40.456   0.705  1.00 25.00           C
ATOM     78  CA  LEU    78      23.700  39.205  -2.352  1.00 25.00           C
ATOM     79  CA  THR    79      22.511  42.434  -4.071  1.00 25.00           C
ATOM     80  CA  GLY    80      19.939  42.868  -6.838  1.00 25.00           C
ATOM     81  CA  GLU    81      17.744  44.425  -4.113  1.00 25.00           C
ATOM     82  CA  ASP    82      14.977  41.884  -4.855  1.00 25.00           C
ATOM     83  CA  VAL    83      17.512  39.022  -4.634  1.00 25.00           C
ATOM     84  CA  ALA    84      18.779  40.369  -1.280  1.00 25.00           C
ATOM     85  CA  ALA    85      15.184  40.577   0.023  1.00 25.00           C
ATOM     86  CA  PHE    86      14.546  36.969  -1.095  1.00 25.00           C
ATOM     87  CA  CYS    87      17.743  35.828   0.678  1.00 25.00           C
ATOM     88  CA  ASP    88      16.650  37.643   3.868  1.00 25.00           C
ATOM     89  CA  GLU    89      13.213  35.967   3.676  1.00 25.00           C
ATOM     90  CA  LEU    90      14.879  32.545   3.241  1.00 25.00           C
ATOM     91  CA  MET    91      17.118  33.223   6.273  1.00 25.00           C
ATOM     92  CA  LYS    92      14.054  34.221   8.343  1.00 25.00           C
ATOM     93  CA  ASP    93      12.259  31.009   7.280  1.00 25.00           C
ATOM     94  CA  THR    94      15.326  28.939   8.268  1.00 25.00           C
ATOM     95  CA  LYS    95      15.436  30.683  11.676  1.00 25.00           C
ATOM     96  CA  THR    96      11.711  29.959  12.193  1.00 25.00           C
ATOM     97  CA  TRP    97      12.274  26.280  11.293  1.00 25.00           C
ATOM     98  CA  MET    98      15.184  26.093  13.777  1.00 25.00           C
ATOM     99  CA  ASP    99      12.990  27.650  16.503  1.00 25.00           C
ATOM    100  CA  LYS   100      10.222  25.108  15.761  1.00 25.00           C
ATOM    101  CA  TYR   101      12.757  22.247  15.982  1.00 25.00           C
ATOM    102  CA  ARG   102      14.024  23.594  19.335  1.00 25.00           C
ATOM    103  CA  THR   103      10.429  23.800  20.638  1.00 25.00           C
ATOM    104  CA  LYS   104       9.791  20.194  19.520  1.00 25.00           C
ATOM    105  CA  LEU   105      12.988  19.053  21.293  1.00 25.00           C
ATOM    106  CA  ASN   106      11.896  20.868  24.484  1.00 25.00           C
ATOM    107  CA  ASP   107       8.458  19.191  24.291  1.00 25.00           C
ATOM    108  CA  SER   108      10.124  15.770  23.856  1.00 25.00           C
ATOM    109  CA  ILE   109      12.363  16.448  26.888  1.00 25.00           C
ATOM    110  CA  GLY   110       9.776  14.737  29.092  1.00 25.00           C
ATOM    111  CA  ARG   111       8.991  11.135  28.428  1.00 25.00           C
ATOM    112  CA  ASP   112      10.500  10.465  25.034  1.00 25.00           C
TER
END
