
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS393_4
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS393_4.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    45        28 - 72          4.93    27.49
  LCS_AVERAGE:     36.21

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31         1 - 31          1.75    15.15
  LONGEST_CONTINUOUS_SEGMENT:    31         2 - 32          1.94    15.22
  LCS_AVERAGE:     18.83

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27         3 - 29          0.99    15.21
  LCS_AVERAGE:     14.34

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      3   31   43     0    3    3    3    4    7   23   29   32   34   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     S       2     S       2     26   31   43     0    3    5   14   28   28   29   31   32   34   37   39   44   47   48   51   53   56   62   63 
LCS_GDT     F       3     F       3     27   31   43    24   25   26   27   28   28   30   31   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     I       4     I       4     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     E       5     E       5     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     K       6     K       6     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     M       7     M       7     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     I       8     I       8     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     G       9     G       9     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     S      10     S      10     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     L      11     L      11     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     N      12     N      12     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     D      13     D      13     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     K      14     K      14     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     R      15     R      15     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     E      16     E      16     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     W      17     W      17     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     K      18     K      18     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     A      19     A      19     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     M      20     M      20     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     E      21     E      21     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     A      22     A      22     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     R      23     R      23     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     A      24     A      24     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   54   57   62   63 
LCS_GDT     K      25     K      25     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   54   57   62   63 
LCS_GDT     A      26     A      26     27   31   43    24   25   26   27   28   28   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     L      27     L      27     27   31   43    18   25   26   27   28   28   30   32   34   35   37   39   44   47   51   54   60   62   63   65 
LCS_GDT     P      28     P      28     27   31   45     3    3    4    6   13   18   29   29   31   33   37   41   46   49   54   57   61   62   63   65 
LCS_GDT     K      29     K      29     27   31   45    15   20   26   27   28   28   29   31   32   34   37   41   46   49   54   57   61   62   63   65 
LCS_GDT     E      30     E      30     16   31   45    15   19   26   27   28   28   29   31   32   33   37   41   46   49   54   57   61   62   63   65 
LCS_GDT     Y      31     Y      31     16   31   45    15   15   16   16   18   19   20   21   23   33   36   41   46   49   54   57   61   62   63   65 
LCS_GDT     H      32     H      32     16   31   45    15   15   16   16   18   19   22   27   30   33   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     H      33     H      33     16   18   45    15   15   16   22   27   27   29   30   31   33   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     A      34     A      34     16   18   45    15   15   16   16   18   27   29   30   31   33   37   41   46   49   54   57   61   62   63   65 
LCS_GDT     Y      35     Y      35     16   18   45    15   15   16   16   18   19   21   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     K      36     K      36     16   18   45    15   15   16   16   18   19   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     A      37     A      37     16   18   45    15   15   16   16   19   27   28   29   30   33   33   41   45   49   54   57   61   62   63   65 
LCS_GDT     I      38     I      38     16   18   45    15   15   16   16   18   19   20   21   27   31   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     Q      39     Q      39     16   18   45    15   15   16   16   18   20   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     K      40     K      40     16   18   45    15   15   16   16   18   19   20   24   30   32   34   41   46   49   54   57   61   62   63   65 
LCS_GDT     Y      41     Y      41     16   18   45    15   15   16   16   18   19   20   23   27   30   33   41   45   49   54   57   61   62   63   65 
LCS_GDT     M      42     M      42     16   18   45    15   15   16   16   18   19   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     W      43     W      43     16   18   45    15   15   16   19   21   23   26   26   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     T      44     T      44     16   18   45     3   12   16   16   18   19   20   23   30   32   34   41   45   49   54   57   61   62   63   65 
LCS_GDT     S      45     S      45      4   18   45     3    4    4    6    8   11   18   21   25   27   31   34   38   43   49   53   56   59   63   65 
LCS_GDT     G      46     G      46      4   18   45     3    4   10   15   18   19   20   22   29   32   34   36   43   48   54   57   61   62   63   65 
LCS_GDT     G      47     G      47      4   24   45    12   17   20   21   22   23   26   26   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     P      48     P      48      4   24   45     3   10   15   19   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     T      49     T      49      4   24   45     3    4    5   14   18   23   25   27   30   32   35   40   46   49   54   57   61   62   63   65 
LCS_GDT     D      50     D      50      4   24   45     3    4    5    6   13   23   25   25   30   32   34   37   42   48   53   57   61   62   63   65 
LCS_GDT     W      51     W      51     20   24   45     8   16   19   21   22   23   26   27   30   32   35   40   46   49   54   57   61   62   63   65 
LCS_GDT     Q      52     Q      52     20   24   45    12   18   20   21   22   23   26   27   30   32   35   37   42   47   53   57   61   62   63   65 
LCS_GDT     D      53     D      53     20   24   45    10   18   20   21   22   23   26   27   30   32   35   40   46   49   54   57   61   62   63   65 
LCS_GDT     T      54     T      54     20   24   45    10   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     K      55     K      55     20   24   45    10   18   20   21   22   23   26   27   30   32   35   40   46   49   54   57   61   62   63   65 
LCS_GDT     R      56     R      56     20   24   45    12   18   20   21   22   23   26   27   30   32   35   40   46   49   54   57   61   62   63   65 
LCS_GDT     I      57     I      57     20   24   45    11   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     F      58     F      58     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     G      59     G      59     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     G      60     G      60     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     I      61     I      61     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     L      62     L      62     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     D      63     D      63     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     L      64     L      64     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     F      65     F      65     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     E      66     E      66     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     E      67     E      67     20   24   45    12   18   20   21   22   23   26   27   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     G      68     G      68     20   24   45    12   18   20   21   22   23   26   26   30   32   35   40   46   49   54   57   61   62   63   65 
LCS_GDT     A      69     A      69     20   24   45    12   18   20   21   22   23   26   26   30   31   35   37   42   47   53   56   61   62   63   65 
LCS_GDT     A      70     A      70     20   24   45     9   17   20   21   22   23   26   27   30   32   35   40   45   49   54   57   61   62   63   65 
LCS_GDT     E      71     E      71      3   22   45     3    3    3    6    7   15   21   26   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     G      72     G      72      3    8   45     1    3    4    6    7    8   11   18   20   28   33   41   46   49   54   57   61   62   63   65 
LCS_GDT     K      73     K      73      3    8   44     0    3    4    6    7    8   11   18   20   28   32   38   44   49   54   57   61   62   63   65 
LCS_GDT     K      74     K      74      3    8   44     3    3    3    6    7    9   14   21   25   31   34   41   46   49   54   57   61   62   63   65 
LCS_GDT     V      75     V      75      4    8   44     4    4    4    6    8   14   19   22   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     T      76     T      76      4    8   34     4    4    4    6    7    9   18   20   24   28   32   38   45   48   54   57   61   62   63   65 
LCS_GDT     D      77     D      77      4    5   34     4    4    4    6   10   15   18   20   24   25   26   31   37   40   48   50   54   55   61   62 
LCS_GDT     L      78     L      78      4    6   34     4    4    5    6   15   16   18   19   24   26   29   32   37   40   46   50   53   57   62   63 
LCS_GDT     T      79     T      79      5    6   34     3    4    5   13   15   16   17   20   24   26   27   34   42   46   51   54   60   62   63   65 
LCS_GDT     G      80     G      80      5    6   34     3    4    6    9   10   15   19   21   22   28   32   38   44   48   52   57   61   62   63   65 
LCS_GDT     E      81     E      81      5   15   34     3    4    5    7    7   14   18   22   30   32   35   40   45   49   54   57   61   62   63   65 
LCS_GDT     D      82     D      82     11   15   33    10   11   11   12   13   14   20   22   30   32   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     V      83     V      83     11   15   33    10   11   11   12   13   14   17   21   24   30   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     A      84     A      84     11   15   33    10   11   11   12   13   14   20   22   26   30   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     A      85     A      85     11   15   33    10   11   11   12   13   14   20   22   26   31   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     F      86     F      86     11   15   33    10   11   11   12   13   15   19   21   24   30   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     C      87     C      87     11   15   33    10   11   11   12   15   16   19   21   24   28   33   41   46   49   54   57   61   62   63   65 
LCS_GDT     D      88     D      88     11   15   33    10   11   11   12   13   16   19   21   24   30   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     E      89     E      89     11   15   33    10   11   11   12   13   16   19   20   24   30   35   41   46   49   54   57   61   62   63   65 
LCS_GDT     L      90     L      90     11   15   33    10   11   11   12   13   15   18   20   24   28   33   41   45   49   54   57   61   62   63   65 
LCS_GDT     M      91     M      91     11   15   33    10   11   11   12   15   16   30   32   34   35   37   39   44   48   54   57   61   62   63   65 
LCS_GDT     K      92     K      92     11   15   33     6   11   11   12   14   16   19   21   29   33   37   39   44   49   54   57   61   62   63   65 
LCS_GDT     D      93     D      93      4   15   33     4    4    6   12   13   14   18   18   24   26   27   31   37   43   48   52   56   59   63   65 
LCS_GDT     T      94     T      94      4   15   33     4    5   10   12   13   14   18   18   21   26   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     K      95     K      95      3   15   33     3    5   12   15   19   23   27   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     T      96     T      96     14   15   33     7   14   17   22   26   27   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     W      97     W      97     14   15   33    12   14   14   19   23   27   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     M      98     M      98     14   15   33    12   14   14   16   20   24   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     D      99     D      99     14   15   33    12   14   14   16   20   24   30   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     K     100     K     100     14   15   33    12   14   14   15   20   24   28   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     Y     101     Y     101     14   15   33    12   14   14   15   19   23   27   32   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     R     102     R     102     14   15   33    12   14   14   15   19   23   27   30   34   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     T     103     T     103     14   15   33    12   14   14   15   18   23   25   29   32   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     K     104     K     104     14   15   33    12   14   14   15   18   21   25   28   32   35   37   39   44   47   48   51   53   57   62   63 
LCS_GDT     L     105     L     105     14   15   33    12   14   14   14   18   21   25   28   30   33   36   39   43   45   48   51   53   57   62   63 
LCS_GDT     N     106     N     106     14   15   33    12   14   14   14   18   21   25   28   30   33   34   38   43   45   48   51   53   57   62   63 
LCS_GDT     D     107     D     107     14   15   33    12   14   14   14   15   16   23   28   30   32   34   36   42   45   48   51   53   57   62   63 
LCS_GDT     S     108     S     108     14   15   33    12   14   14   14   15   16   21   25   30   32   34   36   39   45   46   50   53   57   62   63 
LCS_GDT     I     109     I     109     14   15   33    11   14   14   14   15   16   19   24   26   32   33   36   38   41   43   48   53   57   62   63 
LCS_GDT     G     110     G     110      3   15   33     3    3    4    7   10   12   17   21   22   23   24   26   28   33   38   43   47   50   53   55 
LCS_GDT     R     111     R     111      3    4   33     0    3    3    4    5    7    9   10   12   15   24   26   27   29   31   38   41   46   51   52 
LCS_GDT     D     112     D     112      0    3   30     0    0    3    4    5    7    7   10   10   10   13   17   19   21   31   32   32   34   37   40 
LCS_AVERAGE  LCS_A:  23.13  (  14.34   18.83   36.21 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     25     26     27     28     28     30     32     34     35     37     41     46     49     54     57     61     62     63     65 
GDT PERCENT_CA  21.43  22.32  23.21  24.11  25.00  25.00  26.79  28.57  30.36  31.25  33.04  36.61  41.07  43.75  48.21  50.89  54.46  55.36  56.25  58.04
GDT RMS_LOCAL    0.33   0.36   0.57   0.71   0.87   0.87   1.96   2.46   2.66   2.81   3.04   4.38   4.49   4.68   5.03   5.28   5.54   5.66   5.76   6.00
GDT RMS_ALL_CA  14.99  14.99  15.08  15.15  15.16  15.16  14.43  14.25  14.25  14.22  14.23  26.46  27.59  27.65  27.15  27.40  27.10  27.00  26.98  26.66

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.389
LGA    S       2      S       2          6.328
LGA    F       3      F       3          4.117
LGA    I       4      I       4          3.982
LGA    E       5      E       5          3.996
LGA    K       6      K       6          3.565
LGA    M       7      M       7          2.708
LGA    I       8      I       8          2.562
LGA    G       9      G       9          2.500
LGA    S      10      S      10          1.917
LGA    L      11      L      11          1.130
LGA    N      12      N      12          1.264
LGA    D      13      D      13          1.339
LGA    K      14      K      14          1.051
LGA    R      15      R      15          0.421
LGA    E      16      E      16          0.833
LGA    W      17      W      17          1.219
LGA    K      18      K      18          0.978
LGA    A      19      A      19          1.067
LGA    M      20      M      20          1.571
LGA    E      21      E      21          1.676
LGA    A      22      A      22          1.631
LGA    R      23      R      23          1.769
LGA    A      24      A      24          2.508
LGA    K      25      K      25          2.584
LGA    A      26      A      26          2.664
LGA    L      27      L      27          3.612
LGA    P      28      P      28          8.253
LGA    K      29      K      29          7.003
LGA    E      30      E      30          7.402
LGA    Y      31      Y      31          7.635
LGA    H      32      H      32          9.094
LGA    H      33      H      33          9.479
LGA    A      34      A      34          8.210
LGA    Y      35      Y      35         11.215
LGA    K      36      K      36         13.852
LGA    A      37      A      37         13.034
LGA    I      38      I      38         12.875
LGA    Q      39      Q      39         17.535
LGA    K      40      K      40         19.040
LGA    Y      41      Y      41         16.949
LGA    M      42      M      42         19.343
LGA    W      43      W      43         23.623
LGA    T      44      T      44         22.545
LGA    S      45      S      45         17.765
LGA    G      46      G      46         15.184
LGA    G      47      G      47         19.509
LGA    P      48      P      48         21.800
LGA    T      49      T      49         26.956
LGA    D      50      D      50         27.513
LGA    W      51      W      51         30.053
LGA    Q      52      Q      52         28.768
LGA    D      53      D      53         23.231
LGA    T      54      T      54         21.167
LGA    K      55      K      55         21.845
LGA    R      56      R      56         20.027
LGA    I      57      I      57         14.547
LGA    F      58      F      58         13.632
LGA    G      59      G      59         16.087
LGA    G      60      G      60         15.288
LGA    I      61      I      61         11.550
LGA    L      62      L      62         12.050
LGA    D      63      D      63         16.850
LGA    L      64      L      64         17.273
LGA    F      65      F      65         15.140
LGA    E      66      E      66         17.233
LGA    E      67      E      67         23.230
LGA    G      68      G      68         23.484
LGA    A      69      A      69         21.515
LGA    A      70      A      70         25.901
LGA    E      71      E      71         24.989
LGA    G      72      G      72         20.278
LGA    K      73      K      73         16.061
LGA    K      74      K      74         13.778
LGA    V      75      V      75         11.143
LGA    T      76      T      76         10.595
LGA    D      77      D      77         13.323
LGA    L      78      L      78         10.209
LGA    T      79      T      79         15.163
LGA    G      80      G      80         22.588
LGA    E      81      E      81         26.146
LGA    D      82      D      82         26.740
LGA    V      83      V      83         20.239
LGA    A      84      A      84         18.932
LGA    A      85      A      85         20.102
LGA    F      86      F      86         16.939
LGA    C      87      C      87         10.951
LGA    D      88      D      88         11.705
LGA    E      89      E      89         12.987
LGA    L      90      L      90          9.054
LGA    M      91      M      91          3.581
LGA    K      92      K      92          6.435
LGA    D      93      D      93          8.016
LGA    T      94      T      94          5.471
LGA    K      95      K      95          3.788
LGA    T      96      T      96          3.371
LGA    W      97      W      97          2.186
LGA    M      98      M      98          2.869
LGA    D      99      D      99          2.511
LGA    K     100      K     100          3.232
LGA    Y     101      Y     101          3.967
LGA    R     102      R     102          4.822
LGA    T     103      T     103          5.544
LGA    K     104      K     104          6.231
LGA    L     105      L     105          7.293
LGA    N     106      N     106          7.854
LGA    D     107      D     107          8.954
LGA    S     108      S     108         10.248
LGA    I     109      I     109         11.285
LGA    G     110      G     110         16.971
LGA    R     111      R     111         20.967
LGA    D     112      D     112         22.015

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     32    2.46    31.473    27.338     1.250

LGA_LOCAL      RMSD =  2.459  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.263  Number of atoms =  112 
Std_ALL_ATOMS  RMSD = 13.687  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.731325 * X  +   0.639017 * Y  +  -0.238372 * Z  +  18.954931
  Y_new =  -0.385906 * X  +   0.099527 * Y  +  -0.917154 * Z  +  28.785265
  Z_new =  -0.562352 * X  +   0.762726 * Y  +   0.319388 * Z  +   4.427961 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.174236   -1.967357  [ DEG:    67.2788   -112.7212 ]
  Theta =   0.597228    2.544365  [ DEG:    34.2186    145.7814 ]
  Phi   =  -0.485546    2.656046  [ DEG:   -27.8198    152.1802 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS393_4                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS393_4.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   32   2.46  27.338    13.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS393_4
PFRMAT TS
TARGET T0283
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      31.208   1.905  25.038  1.00 25.00           C
ATOM      2  CA  SER     2      29.129   3.638  22.389  1.00 25.00           C
ATOM      3  CA  PHE     3      30.301   5.210  19.151  1.00 25.00           C
ATOM      4  CA  ILE     4      29.449   3.088  16.078  1.00 25.00           C
ATOM      5  CA  GLU     5      25.896   4.516  16.045  1.00 25.00           C
ATOM      6  CA  LYS     6      27.299   8.074  16.265  1.00 25.00           C
ATOM      7  CA  MET     7      29.681   7.341  13.358  1.00 25.00           C
ATOM      8  CA  ILE     8      26.768   5.970  11.284  1.00 25.00           C
ATOM      9  CA  GLY     9      24.714   9.110  12.048  1.00 25.00           C
ATOM     10  CA  SER    10      27.657  11.322  10.993  1.00 25.00           C
ATOM     11  CA  LEU    11      28.006   9.346   7.732  1.00 25.00           C
ATOM     12  CA  ASN    12      24.258   9.752   7.056  1.00 25.00           C
ATOM     13  CA  ASP    13      24.527  13.519   7.688  1.00 25.00           C
ATOM     14  CA  LYS    14      27.498  13.735   5.281  1.00 25.00           C
ATOM     15  CA  ARG    15      25.514  11.824   2.621  1.00 25.00           C
ATOM     16  CA  GLU    16      22.549  14.203   3.089  1.00 25.00           C
ATOM     17  CA  TRP    17      24.879  17.219   2.723  1.00 25.00           C
ATOM     18  CA  LYS    18      26.352  15.724  -0.480  1.00 25.00           C
ATOM     19  CA  ALA    19      22.826  15.158  -1.866  1.00 25.00           C
ATOM     20  CA  MET    20      21.896  18.781  -1.045  1.00 25.00           C
ATOM     21  CA  GLU    21      25.061  20.021  -2.808  1.00 25.00           C
ATOM     22  CA  ALA    22      24.209  17.898  -5.881  1.00 25.00           C
ATOM     23  CA  ARG    23      20.656  19.327  -5.913  1.00 25.00           C
ATOM     24  CA  ALA    24      22.059  22.885  -5.694  1.00 25.00           C
ATOM     25  CA  LYS    25      24.441  22.152  -8.601  1.00 25.00           C
ATOM     26  CA  ALA    26      21.528  20.780 -10.675  1.00 25.00           C
ATOM     27  CA  LEU    27      20.085  24.244  -9.899  1.00 25.00           C
ATOM     28  CA  PRO    28      20.605  27.656  -8.259  1.00 25.00           C
ATOM     29  CA  LYS    29      22.005  30.500 -10.463  1.00 25.00           C
ATOM     30  CA  GLU    30      22.347  33.411  -7.998  1.00 25.00           C
ATOM     31  CA  TYR    31      19.331  35.150  -9.595  1.00 25.00           C
ATOM     32  CA  HIS    32      17.292  31.920  -9.320  1.00 25.00           C
ATOM     33  CA  HIS    33      18.270  31.589  -5.633  1.00 25.00           C
ATOM     34  CA  ALA    34      17.224  35.219  -5.003  1.00 25.00           C
ATOM     35  CA  TYR    35      13.863  34.575  -6.723  1.00 25.00           C
ATOM     36  CA  LYS    36      13.331  31.453  -4.569  1.00 25.00           C
ATOM     37  CA  ALA    37      14.131  33.466  -1.411  1.00 25.00           C
ATOM     38  CA  ILE    38      11.641  36.174  -2.476  1.00 25.00           C
ATOM     39  CA  GLN    39       8.960  33.505  -3.078  1.00 25.00           C
ATOM     40  CA  LYS    40       9.636  32.010   0.382  1.00 25.00           C
ATOM     41  CA  TYR    41       9.336  35.482   1.969  1.00 25.00           C
ATOM     42  CA  MET    42       6.019  36.058   0.143  1.00 25.00           C
ATOM     43  CA  TRP    43       4.725  32.671   1.376  1.00 25.00           C
ATOM     44  CA  THR    44       5.747  33.557   4.960  1.00 25.00           C
ATOM     45  CA  SER    45       9.042  33.715   6.871  1.00 25.00           C
ATOM     46  CA  GLY    46       8.159  37.409   7.125  1.00 25.00           C
ATOM     47  CA  GLY    47       4.533  38.432   6.785  1.00 25.00           C
ATOM     48  CA  PRO    48       3.210  39.708   3.439  1.00 25.00           C
ATOM     49  CA  THR    49       2.085  39.283  -0.155  1.00 25.00           C
ATOM     50  CA  ASP    50       5.346  40.781  -1.468  1.00 25.00           C
ATOM     51  CA  TRP    51       6.031  44.475  -0.619  1.00 25.00           C
ATOM     52  CA  GLN    52       9.525  45.795  -1.466  1.00 25.00           C
ATOM     53  CA  ASP    53      10.533  45.559   2.222  1.00 25.00           C
ATOM     54  CA  THR    54       9.235  41.959   2.371  1.00 25.00           C
ATOM     55  CA  LYS    55      11.222  41.084  -0.783  1.00 25.00           C
ATOM     56  CA  ARG    56      14.377  42.626   0.748  1.00 25.00           C
ATOM     57  CA  ILE    57      13.838  40.604   3.955  1.00 25.00           C
ATOM     58  CA  PHE    58      13.416  37.403   1.896  1.00 25.00           C
ATOM     59  CA  GLY    59      16.646  38.174  -0.012  1.00 25.00           C
ATOM     60  CA  GLY    60      18.491  38.746   3.295  1.00 25.00           C
ATOM     61  CA  ILE    61      17.166  35.414   4.638  1.00 25.00           C
ATOM     62  CA  LEU    62      18.326  33.638   1.450  1.00 25.00           C
ATOM     63  CA  ASP    63      21.794  35.225   1.799  1.00 25.00           C
ATOM     64  CA  LEU    64      21.974  34.089   5.451  1.00 25.00           C
ATOM     65  CA  PHE    65      20.989  30.534   4.419  1.00 25.00           C
ATOM     66  CA  GLU    66      23.696  30.544   1.710  1.00 25.00           C
ATOM     67  CA  GLU    67      26.286  31.733   4.268  1.00 25.00           C
ATOM     68  CA  GLY    68      25.225  28.948   6.674  1.00 25.00           C
ATOM     69  CA  ALA    69      25.548  26.365   3.865  1.00 25.00           C
ATOM     70  CA  ALA    70      29.042  27.686   3.019  1.00 25.00           C
ATOM     71  CA  GLU    71      28.151  29.404  -0.296  1.00 25.00           C
ATOM     72  CA  GLY    72      25.806  30.320  -3.161  1.00 25.00           C
ATOM     73  CA  LYS    73      22.197  29.062  -3.554  1.00 25.00           C
ATOM     74  CA  LYS    74      19.072  26.892  -3.544  1.00 25.00           C
ATOM     75  CA  VAL    75      15.430  25.809  -3.240  1.00 25.00           C
ATOM     76  CA  THR    76      15.164  26.654  -6.965  1.00 25.00           C
ATOM     77  CA  ASP    77      13.211  23.418  -7.585  1.00 25.00           C
ATOM     78  CA  LEU    78      10.773  24.561  -4.939  1.00 25.00           C
ATOM     79  CA  THR    79      10.595  21.110  -3.449  1.00 25.00           C
ATOM     80  CA  GLY    80      10.298  17.497  -2.343  1.00 25.00           C
ATOM     81  CA  GLU    81       8.285  18.377   0.794  1.00 25.00           C
ATOM     82  CA  ASP    82      11.163  17.164   3.011  1.00 25.00           C
ATOM     83  CA  VAL    83      13.637  19.287   1.002  1.00 25.00           C
ATOM     84  CA  ALA    84      11.360  22.343   1.380  1.00 25.00           C
ATOM     85  CA  ALA    85      11.138  21.740   5.155  1.00 25.00           C
ATOM     86  CA  PHE    86      14.952  21.474   5.363  1.00 25.00           C
ATOM     87  CA  CYS    87      15.311  24.751   3.413  1.00 25.00           C
ATOM     88  CA  ASP    88      12.832  26.460   5.780  1.00 25.00           C
ATOM     89  CA  GLU    89      14.795  25.171   8.805  1.00 25.00           C
ATOM     90  CA  LEU    90      18.053  26.491   7.286  1.00 25.00           C
ATOM     91  CA  MET    91      16.420  29.903   6.685  1.00 25.00           C
ATOM     92  CA  LYS    92      15.189  29.979  10.311  1.00 25.00           C
ATOM     93  CA  ASP    93      18.711  29.122  11.550  1.00 25.00           C
ATOM     94  CA  THR    94      20.178  31.925   9.391  1.00 25.00           C
ATOM     95  CA  LYS    95      17.608  34.390  10.800  1.00 25.00           C
ATOM     96  CA  THR    96      18.494  33.312  14.367  1.00 25.00           C
ATOM     97  CA  TRP    97      22.217  33.803  13.617  1.00 25.00           C
ATOM     98  CA  MET    98      21.499  37.291  12.208  1.00 25.00           C
ATOM     99  CA  ASP    99      19.486  38.170  15.345  1.00 25.00           C
ATOM    100  CA  LYS   100      22.363  36.958  17.562  1.00 25.00           C
ATOM    101  CA  TYR   101      24.838  39.081  15.552  1.00 25.00           C
ATOM    102  CA  ARG   102      22.561  42.137  15.931  1.00 25.00           C
ATOM    103  CA  THR   103      22.338  41.534  19.706  1.00 25.00           C
ATOM    104  CA  LYS   104      26.153  41.269  19.914  1.00 25.00           C
ATOM    105  CA  LEU   105      26.512  44.545  17.964  1.00 25.00           C
ATOM    106  CA  ASN   106      24.033  46.254  20.332  1.00 25.00           C
ATOM    107  CA  ASP   107      25.996  44.965  23.357  1.00 25.00           C
ATOM    108  CA  SER   108      29.254  46.285  21.836  1.00 25.00           C
ATOM    109  CA  ILE   109      27.620  49.697  21.237  1.00 25.00           C
ATOM    110  CA  GLY   110      30.364  50.265  18.714  1.00 25.00           C
ATOM    111  CA  ARG   111      32.567  48.868  15.890  1.00 25.00           C
ATOM    112  CA  ASP   112      33.658  46.503  13.179  1.00 25.00           C
TER
END
