
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  147 , name T0303TS168_4-D1
# Molecule2: number of CA atoms  147 ( 1151),  selected  147 , name T0303_D1.pdb
# PARAMETERS: T0303TS168_4-D1.T0303_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   143         1 - 220         4.79     6.33
  LCS_AVERAGE:     94.97

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        97 - 125         2.00     6.48
  LONGEST_CONTINUOUS_SEGMENT:    29       145 - 173         1.97     6.64
  LONGEST_CONTINUOUS_SEGMENT:    29       146 - 174         2.00     6.58
  LCS_AVERAGE:     13.85

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18       152 - 169         0.98     7.38
  LONGEST_CONTINUOUS_SEGMENT:    18       153 - 170         0.95     7.49
  LCS_AVERAGE:      5.99

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      5    6  143     3    4   13   16   23   33   49   58   85  101  116  122  128  132  133  135  137  138  138  138 
LCS_GDT     T       2     T       2      5    6  143     3    4    6   21   38   62   87  104  113  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Q       3     Q       3      5   11  143     3   14   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F       4     F       4      5   12  143     3   13   31   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K       5     K       5      5   12  143     3    6   22   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L       6     L       6      5   12  143     3    5   33   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I       7     I       7      6   12  143     3    6   19   34   69   81   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G       8     G       8      6   12  143     3    6   16   34   55   80   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F       9     F       9      6   12  143     3    9   27   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D      10     D      10      6   12  143     6   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L      11     L      11      6   12  143     3   16   34   54   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D      12     D      12      6   12  143     3   16   30   49   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G      13     G      13      5   12  143     3   10   17   27   51   76   94  108  114  120  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     T      14     T      14      4   12  143     5   13   25   43   67   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L      15     L      15      4   12  143     3    9   33   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V      16     V      16      4   18  143     0    7   16   31   55   80   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     N      17     N      17      4   19  143     0    5   18   31   50   80   96  107  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     R      95     R      95      6   19  143     3    5   15   24   38   55   85  102  113  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L      96     L      96      6   19  143     3    8   21   40   61   83   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Y      97     Y      97     14   29  143     4   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P      98     P      98     14   29  143     5   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     N      99     N      99     14   29  143     4   12   22   53   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V     100     V     100     14   29  143    11   16   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     101     K     101     14   29  143    11   16   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     E     102     E     102     14   29  143    11   16   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     T     103     T     103     14   29  143    11   16   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     104     L     104     14   29  143    11   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     E     105     E     105     14   29  143    11   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     106     A     106     14   29  143    11   16   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     107     L     107     14   29  143    11   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     108     K     108     14   29  143    11   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     109     A     109     14   29  143    11   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Q     110     Q     110     14   29  143    11   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     111     G     111     13   29  143     3    9   25   39   57   79   99  107  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Y     112     Y     112     13   29  143     8   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     113     I     113      5   29  143     3    5   12   18   27   44   69   93  104  117  123  128  131  134  134  135  136  138  138  138 
LCS_GDT     L     114     L     114      5   29  143     4    5   12   21   32   46   69   94  109  118  125  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     115     A     115      5   29  143     3    7   20   28   41   74   93  105  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V     116     V     116      5   29  143     3   16   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V     117     V     117      5   29  143     5   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     T     118     T     118      4   29  143     4    5   24   51   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     N     119     N     119      4   29  143     4   11   25   50   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     120     K     120      5   29  143     4    6   27   50   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     121     P     121      5   29  143     4   11   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     T     122     T     122     10   29  143     7   17   25   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     123     K     123     10   29  143     6   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     H     124     H     124     10   29  143     6   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V     125     V     125     10   29  143     7   11   21   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Q     126     Q     126     10   18  143     7   11   13   30   60   78   96  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     127     P     127     10   18  143     7   11   24   45   67   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     128     I     128     10   18  143     7    9   13   34   57   80   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     129     L     129     10   18  143     7    9   13   19   29   45   66   98  113  120  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     T     130     T     130     10   18  143     7   11   13   23   32   50   81  101  113  120  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     131     A     131     10   18  143     7    9   13   21   36   54   80  101  113  120  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F     132     F     132      5   18  143     4    6   19   37   57   80   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     133     G     133      5   18  143     4    6   20   37   57   80   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     134     I     134      5   17  143     4    9   28   45   69   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D     135     D     135      5    7  143     4    4    7   20   50   64   80  101  113  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     H     136     H     136      4    7  143     4    4    9   21   32   46   65   93  110  117  125  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     137     L     137      4    7  143     4    4   10   17   32   53   78  104  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F     138     F     138      4    6  143     4   14   33   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     S     139     S     139      3    6  143     6   14   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     E     140     E     140      3    6  143     3    9   30   48   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     M     141     M     141      4   11  143     3    4   11   27   54   78   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     142     L     142      4   11  143     3    4   21   39   58   83   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     143     G     143      5   26  143     5    7   11   38   59   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     144     G     144      5   27  143     4    4   14   38   65   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Q     145     Q     145      5   29  143     4   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     S     146     S     146      6   29  143     4    6   21   45   71   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     147     L     147      6   29  143     3   10   25   45   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     148     P     148      6   29  143     3   12   30   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     E     149     E     149      6   29  143     5   11   25   45   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     150     I     150     17   29  143     2   11   19   44   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     151     K     151     17   29  143     1    9   19   37   69   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     152     P     152     18   29  143     3   16   30   54   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     H     153     H     153     18   29  143     5   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     154     P     154     18   29  143     8   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     155     A     155     18   29  143    11   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     156     P     156     18   29  143    11   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F     157     F     157     18   29  143    11   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Y     158     Y     158     18   29  143    11   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Y     159     Y     159     18   29  143    11   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     160     L     160     18   29  143    11   17   25   43   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     C     161     C     161     18   29  143    11   17   25   43   67   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     162     G     162     18   29  143    11   17   25   43   67   85   96  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     163     K     163     18   29  143    11   17   23   39   67   85   96  107  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F     164     F     164     18   29  143    11   17   25   39   67   85   96  107  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     165     G     165     18   29  143    11   17   25   39   67   85   96  107  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     166     L     166     18   29  143     4   15   33   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Y     167     Y     167     18   29  143     3    9   25   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     168     P     168     18   29  143     7   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     169     K     169     18   29  143     6   15   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Q     170     Q     170     18   29  143     3    5   23   39   67   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     171     I     171      4   29  143     1    5    9   16   36   62   88  106  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     172     L     172      4   29  143     3    7   22   44   67   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F     173     F     173      4   29  143     3    7   17   36   63   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V     174     V     174      4   29  143     3    7   22   42   71   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     175     G     175      4   24  143     1    3    5   11   23   40   63   85  111  119  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D     176     D     176     12   24  143     3    9   19   31   51   80   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     S     177     S     177     12   24  143     3   12   20   33   56   81   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Q     178     Q     178     12   24  143     6   12   20   40   63   84   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     N     179     N     179     12   24  143     6   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D     180     D     180     12   24  143     7   13   30   54   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     181     I     181     12   24  143     7   12   20   39   61   84   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F     182     F     182     12   24  143     7   12   26   42   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     183     A     183     12   24  143     7   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     184     A     184     12   24  143     7   11   21   46   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     H     185     H     185     12   24  143     7   11   21   40   68   84   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     S     186     S     186     12   24  143     7   15   27   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     187     A     187     12   24  143     6   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     188     G     188     12   24  143     5   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     C     189     C     189      9   24  143     5   14   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     190     A     190      5   24  143     3    4   22   54   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V     191     V     191      5   24  143     3   17   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     V     192     V     192      5   24  143     3   11   30   45   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     193     G     193      5   24  143     4   16   30   54   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     L     194     L     194      5   24  143     5   18   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     T     195     T     195      5   21  143     4    8   20   30   50   78   96  106  114  120  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Y     196     Y     196      5   21  143     4    7   18   31   42   77   96  105  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     G     197     G     197      5    9  143     3    4    5    6    9   19   45   53   89  109  117  128  132  134  134  135  137  138  138  138 
LCS_GDT     Y     198     Y     198      5    6  143     3    4    5    5    6   13   16   21   29   43   66   78   91  106  117  134  137  138  138  138 
LCS_GDT     N     199     N     199      5    6  143     3    4    5    5    6    8   11   15   20   41   51   63   78  104  118  134  137  138  138  138 
LCS_GDT     Y     200     Y     200      3    6  143     3    3    4    4    6    7   11   26   50   62   78   96  118  126  131  134  137  138  138  138 
LCS_GDT     N     201     N     201      3    6  143     0    3    3   15   25   31   50   76  102  112  121  129  132  134  134  135  137  138  138  138 
LCS_GDT     I     202     I     202      3    5  143     3    3    3   16   30   62   86  102  111  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     203     P     203      5    9  143     5    7   12   19   42   72   95  102  114  120  126  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     204     I     204      5    9  143     5   11   34   55   73   85   98  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     A     205     A     205      5    9  143     5   15   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     Q     206     Q     206      5    9  143     7    9   19   37   69   82   98  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     S     207     S     207      5    9  143     3   11   15   33   58   72   95  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     K     208     K     208      4    9  143     3    3    4   26   58   75   94  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     P     209     P     209      4    9  143     3   13   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D     210     D     210      4    9  143     6   16   34   55   73   85   99  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     W     211     W     211      4    9  143     4   11   17   37   61   82   98  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     I     212     I     212      4    9  143     4   11   16   31   54   81   97  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     F     213     F     213      4    7  143     3    6   16   36   58   82   98  108  114  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D     214     D     214      4    7  143     2    3    9   22   40   57   84  103  113  121  127  130  132  134  134  135  137  138  138  138 
LCS_GDT     D     215     D     215      3   10  143     1    3    4   24   30   44   73   83   98  108  120  125  130  134  134  135  137  138  138  138 
LCS_GDT     F     216     F     216      5   10  143     3    4    6    9    9   10   14   15   21   27   30   38  101  114  119  127  132  132  135  135 
LCS_GDT     A     217     A     217      8   10  143     3    4    8    9    9   10   14   14   15   16   18   20   23   42   55   97  102  118  124  130 
LCS_GDT     D     218     D     218      8   10  143     3    7    8    9    9   14   17   20   28   55   64   69   77   84   99  110  119  127  132  133 
LCS_GDT     I     219     I     219      8   10  143     5    7    8    9    9   14   17   19   28   37   64   69   77   84   90  105  113  121  129  132 
LCS_GDT     L     220     L     220      8   10  143     5    7    8    9    9   10   14   14   15   16   18   25   28   42   44   54   67   78   84   91 
LCS_GDT     K     221     K     221      8   10   18     3    7    8    9    9   10   14   14   15   16   18   20   27   31   38   43   61   73   84   91 
LCS_GDT     I     222     I     222      8   10   18     5    7    8    9    9   10   14   14   15   16   18   20   27   47   50   58   62   69   78  101 
LCS_GDT     T     223     T     223      8   10   18     5    7    8    9    9   10   14   14   15   16   18   20   20   22   28   31   38   51   64   72 
LCS_GDT     Q     224     Q     224      8   10   18     5    7    8    9    9    9   14   14   15   16   18   20   20   22   23   25   25   27   31   37 
LCS_AVERAGE  LCS_A:  38.27  (   5.99   13.85   94.97 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     18     34     55     73     85     99    108    114    121    127    130    132    134    134    135    137    138    138    138 
GDT PERCENT_CA   7.48  12.24  23.13  37.41  49.66  57.82  67.35  73.47  77.55  82.31  86.39  88.44  89.80  91.16  91.16  91.84  93.20  93.88  93.88  93.88
GDT RMS_LOCAL    0.24   0.78   1.10   1.44   1.71   1.94   2.29   2.44   2.59   2.85   3.02   3.12   3.23   3.33   3.33   3.42   3.71   3.75   3.75   3.75
GDT RMS_ALL_CA   7.45   6.34   6.29   6.34   6.33   6.30   6.32   6.36   6.36   6.40   6.41   6.39   6.42   6.40   6.40   6.43   6.53   6.52   6.52   6.52

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          9.666
LGA    T       2      T       2          5.446
LGA    Q       3      Q       3          1.874
LGA    F       4      F       4          1.263
LGA    K       5      K       5          2.444
LGA    L       6      L       6          2.300
LGA    I       7      I       7          3.155
LGA    G       8      G       8          3.460
LGA    F       9      F       9          2.252
LGA    D      10      D      10          1.044
LGA    L      11      L      11          1.410
LGA    D      12      D      12          1.825
LGA    G      13      G      13          3.935
LGA    T      14      T      14          3.715
LGA    L      15      L      15          2.351
LGA    V      16      V      16          3.147
LGA    N      17      N      17          4.323
LGA    R      95      R      95          6.150
LGA    L      96      L      96          3.396
LGA    Y      97      Y      97          1.282
LGA    P      98      P      98          0.516
LGA    N      99      N      99          2.513
LGA    V     100      V     100          1.432
LGA    K     101      K     101          1.234
LGA    E     102      E     102          1.913
LGA    T     103      T     103          1.874
LGA    L     104      L     104          0.888
LGA    E     105      E     105          1.448
LGA    A     106      A     106          1.952
LGA    L     107      L     107          1.221
LGA    K     108      K     108          1.152
LGA    A     109      A     109          2.075
LGA    Q     110      Q     110          1.460
LGA    G     111      G     111          4.669
LGA    Y     112      Y     112          2.054
LGA    I     113      I     113          7.143
LGA    L     114      L     114          6.159
LGA    A     115      A     115          5.083
LGA    V     116      V     116          1.851
LGA    V     117      V     117          1.539
LGA    T     118      T     118          1.810
LGA    N     119      N     119          2.377
LGA    K     120      K     120          1.697
LGA    P     121      P     121          1.638
LGA    T     122      T     122          2.648
LGA    K     123      K     123          1.280
LGA    H     124      H     124          0.833
LGA    V     125      V     125          1.910
LGA    Q     126      Q     126          3.636
LGA    P     127      P     127          2.090
LGA    I     128      I     128          3.292
LGA    L     129      L     129          5.162
LGA    T     130      T     130          5.275
LGA    A     131      A     131          5.644
LGA    F     132      F     132          3.902
LGA    G     133      G     133          3.629
LGA    I     134      I     134          2.114
LGA    D     135      D     135          5.400
LGA    H     136      H     136          6.340
LGA    L     137      L     137          4.696
LGA    F     138      F     138          2.829
LGA    S     139      S     139          2.847
LGA    E     140      E     140          2.570
LGA    M     141      M     141          3.484
LGA    L     142      L     142          3.310
LGA    G     143      G     143          2.887
LGA    G     144      G     144          2.689
LGA    Q     145      Q     145          1.564
LGA    S     146      S     146          2.001
LGA    L     147      L     147          2.394
LGA    P     148      P     148          1.538
LGA    E     149      E     149          2.621
LGA    I     150      I     150          2.881
LGA    K     151      K     151          3.354
LGA    P     152      P     152          2.158
LGA    H     153      H     153          1.121
LGA    P     154      P     154          0.722
LGA    A     155      A     155          1.067
LGA    P     156      P     156          1.410
LGA    F     157      F     157          1.782
LGA    Y     158      Y     158          2.029
LGA    Y     159      Y     159          2.392
LGA    L     160      L     160          3.290
LGA    C     161      C     161          3.697
LGA    G     162      G     162          3.972
LGA    K     163      K     163          4.599
LGA    F     164      F     164          4.576
LGA    G     165      G     165          4.766
LGA    L     166      L     166          2.664
LGA    Y     167      Y     167          2.589
LGA    P     168      P     168          1.650
LGA    K     169      K     169          1.742
LGA    Q     170      Q     170          3.902
LGA    I     171      I     171          5.144
LGA    L     172      L     172          3.176
LGA    F     173      F     173          3.581
LGA    V     174      V     174          2.975
LGA    G     175      G     175          6.183
LGA    D     176      D     176          3.502
LGA    S     177      S     177          3.644
LGA    Q     178      Q     178          3.410
LGA    N     179      N     179          1.423
LGA    D     180      D     180          2.449
LGA    I     181      I     181          3.321
LGA    F     182      F     182          2.604
LGA    A     183      A     183          1.698
LGA    A     184      A     184          2.761
LGA    H     185      H     185          3.062
LGA    S     186      S     186          2.196
LGA    A     187      A     187          1.495
LGA    G     188      G     188          0.577
LGA    C     189      C     189          1.080
LGA    A     190      A     190          2.525
LGA    V     191      V     191          2.043
LGA    V     192      V     192          3.053
LGA    G     193      G     193          2.779
LGA    L     194      L     194          1.943
LGA    T     195      T     195          5.075
LGA    Y     196      Y     196          4.757
LGA    G     197      G     197          8.147
LGA    Y     198      Y     198         12.003
LGA    N     199      N     199         11.922
LGA    Y     200      Y     200         11.162
LGA    N     201      N     201          7.274
LGA    I     202      I     202          5.742
LGA    P     203      P     203          4.582
LGA    I     204      I     204          2.016
LGA    A     205      A     205          1.334
LGA    Q     206      Q     206          2.860
LGA    S     207      S     207          3.782
LGA    K     208      K     208          3.769
LGA    P     209      P     209          1.721
LGA    D     210      D     210          0.312
LGA    W     211      W     211          2.749
LGA    I     212      I     212          3.592
LGA    F     213      F     213          3.244
LGA    D     214      D     214          5.592
LGA    D     215      D     215          7.570
LGA    F     216      F     216         12.177
LGA    A     217      A     217         17.086
LGA    D     218      D     218         15.352
LGA    I     219      I     219         15.365
LGA    L     220      L     220         21.284
LGA    K     221      K     221         23.742
LGA    I     222      I     222         23.400
LGA    T     223      T     223         24.964
LGA    Q     224      Q     224         31.144

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  147    4.0    108    2.44    53.741    48.395     4.244

LGA_LOCAL      RMSD =  2.445  Number of atoms =  108  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.434  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  6.245  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.897085 * X  +   0.428946 * Y  +   0.106040 * Z  + -11.852207
  Y_new =  -0.069088 * X  +   0.100867 * Y  +  -0.992498 * Z  +  80.164879
  Z_new =  -0.436424 * X  +  -0.897681 * Y  +  -0.060852 * Z  +  17.986378 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.638480    1.503112  [ DEG:   -93.8780     86.1220 ]
  Theta =   0.451620    2.689972  [ DEG:    25.8759    154.1241 ]
  Phi   =  -3.064730    0.076862  [ DEG:  -175.5961      4.4039 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0303TS168_4-D1                               
REMARK     2: T0303_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0303TS168_4-D1.T0303_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  147   4.0  108   2.44  48.395     6.25
REMARK  ---------------------------------------------------------- 
MOLECULE T0303TS168_4-D1
PFRMAT TS
TARGET T0303
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1     -16.745  50.198   9.498  1.00 25.00           C
ATOM      2  CA  THR     2     -18.622  53.193   8.289  1.00 25.00           C
ATOM      3  CA  GLN     3     -17.724  56.769   7.588  1.00 25.00           C
ATOM      4  CA  PHE     4     -15.392  58.051  10.283  1.00 25.00           C
ATOM      5  CA  LYS     5     -13.808  59.727  13.307  1.00 25.00           C
ATOM      6  CA  LEU     6     -12.886  62.809  15.356  1.00 25.00           C
ATOM      7  CA  ILE     7     -11.485  65.760  13.441  1.00 25.00           C
ATOM      8  CA  GLY     8      -9.220  68.815  13.497  1.00 25.00           C
ATOM      9  CA  PHE     9     -11.071  72.043  14.090  1.00 25.00           C
ATOM     10  CA  ASP    10      -9.966  74.728  16.520  1.00 25.00           C
ATOM     11  CA  LEU    11     -10.618  75.246  20.202  1.00 25.00           C
ATOM     12  CA  ASP    12      -9.929  79.021  20.064  1.00 25.00           C
ATOM     13  CA  GLY    13      -8.685  80.138  16.586  1.00 25.00           C
ATOM     14  CA  THR    14     -12.343  80.685  15.542  1.00 25.00           C
ATOM     15  CA  LEU    15     -14.292  78.189  17.701  1.00 25.00           C
ATOM     16  CA  VAL    16     -15.647  76.777  20.939  1.00 25.00           C
ATOM     17  CA  ASN    17     -16.711  80.356  21.697  1.00 25.00           C
ATOM     95  CA  ARG    95     -24.719  81.285  23.940  1.00 25.00           C
ATOM     96  CA  LEU    96     -22.854  79.180  21.377  1.00 25.00           C
ATOM     97  CA  TYR    97     -20.672  80.518  18.592  1.00 25.00           C
ATOM     98  CA  PRO    98     -23.961  80.112  16.696  1.00 25.00           C
ATOM     99  CA  ASN    99     -23.410  76.648  15.261  1.00 25.00           C
ATOM    100  CA  VAL   100     -20.745  75.635  17.803  1.00 25.00           C
ATOM    101  CA  LYS   101     -22.462  73.936  20.775  1.00 25.00           C
ATOM    102  CA  GLU   102     -25.368  72.872  18.519  1.00 25.00           C
ATOM    103  CA  THR   103     -22.895  71.448  15.966  1.00 25.00           C
ATOM    104  CA  LEU   104     -21.101  69.514  18.743  1.00 25.00           C
ATOM    105  CA  GLU   105     -24.451  68.117  19.967  1.00 25.00           C
ATOM    106  CA  ALA   106     -25.334  67.042  16.398  1.00 25.00           C
ATOM    107  CA  LEU   107     -21.931  65.320  16.049  1.00 25.00           C
ATOM    108  CA  LYS   108     -22.483  63.500  19.373  1.00 25.00           C
ATOM    109  CA  ALA   109     -25.947  62.363  18.203  1.00 25.00           C
ATOM    110  CA  GLN   110     -24.783  60.383  15.111  1.00 25.00           C
ATOM    111  CA  GLY   111     -21.822  58.835  13.219  1.00 25.00           C
ATOM    112  CA  TYR   112     -19.215  61.085  14.856  1.00 25.00           C
ATOM    113  CA  ILE   113     -17.710  64.017  12.878  1.00 25.00           C
ATOM    114  CA  LEU   114     -16.296  67.386  13.937  1.00 25.00           C
ATOM    115  CA  ALA   115     -14.202  69.082  16.632  1.00 25.00           C
ATOM    116  CA  VAL   116     -11.341  70.266  18.792  1.00 25.00           C
ATOM    117  CA  VAL   117      -7.647  70.979  18.881  1.00 25.00           C
ATOM    118  CA  THR   118      -5.000  72.933  17.001  1.00 25.00           C
ATOM    119  CA  ASN   119      -4.005  76.570  17.067  1.00 25.00           C
ATOM    120  CA  LYS   120      -5.029  76.597  20.771  1.00 25.00           C
ATOM    121  CA  PRO   121      -2.323  77.512  23.336  1.00 25.00           C
ATOM    122  CA  THR   122      -1.553  75.823  26.655  1.00 25.00           C
ATOM    123  CA  LYS   123      -3.313  76.247  30.029  1.00 25.00           C
ATOM    124  CA  HIS   124      -6.308  77.880  28.289  1.00 25.00           C
ATOM    125  CA  VAL   125      -6.459  74.988  25.783  1.00 25.00           C
ATOM    126  CA  GLN   126      -6.364  72.460  28.658  1.00 25.00           C
ATOM    127  CA  PRO   127      -9.198  74.329  30.429  1.00 25.00           C
ATOM    128  CA  ILE   128     -11.261  74.308  27.203  1.00 25.00           C
ATOM    129  CA  LEU   129     -10.663  70.546  26.816  1.00 25.00           C
ATOM    130  CA  THR   130     -11.760  69.972  30.440  1.00 25.00           C
ATOM    131  CA  ALA   131     -14.929  72.034  29.833  1.00 25.00           C
ATOM    132  CA  PHE   132     -18.306  73.057  28.337  1.00 25.00           C
ATOM    133  CA  GLY   133     -20.620  70.064  27.877  1.00 25.00           C
ATOM    134  CA  ILE   134     -19.068  69.984  24.436  1.00 25.00           C
ATOM    135  CA  ASP   135     -18.875  66.185  25.055  1.00 25.00           C
ATOM    136  CA  HIS   136     -17.106  63.830  22.609  1.00 25.00           C
ATOM    137  CA  LEU   137     -15.578  66.830  20.786  1.00 25.00           C
ATOM    138  CA  PHE   138     -14.369  68.273  24.121  1.00 25.00           C
ATOM    139  CA  SER   139     -12.807  64.900  25.042  1.00 25.00           C
ATOM    140  CA  GLU   140     -11.049  64.758  21.642  1.00 25.00           C
ATOM    141  CA  MET   141      -7.408  64.533  22.697  1.00 25.00           C
ATOM    142  CA  LEU   142      -6.166  67.497  24.740  1.00 25.00           C
ATOM    143  CA  GLY   143      -4.322  69.658  22.134  1.00 25.00           C
ATOM    144  CA  GLY   144      -1.280  71.717  21.121  1.00 25.00           C
ATOM    145  CA  GLN   145       0.969  71.467  24.157  1.00 25.00           C
ATOM    146  CA  SER   146       2.375  68.168  22.932  1.00 25.00           C
ATOM    147  CA  LEU   147       2.777  69.139  19.289  1.00 25.00           C
ATOM    148  CA  PRO   148       6.373  69.223  18.125  1.00 25.00           C
ATOM    149  CA  GLU   149       6.013  71.932  15.465  1.00 25.00           C
ATOM    150  CA  ILE   150       3.059  73.657  17.065  1.00 25.00           C
ATOM    151  CA  LYS   151       0.843  75.227  14.332  1.00 25.00           C
ATOM    152  CA  PRO   152       0.983  72.425  11.784  1.00 25.00           C
ATOM    153  CA  HIS   153       2.968  69.229  11.006  1.00 25.00           C
ATOM    154  CA  PRO   154      -0.210  67.075  10.808  1.00 25.00           C
ATOM    155  CA  ALA   155       1.084  65.685  14.134  1.00 25.00           C
ATOM    156  CA  PRO   156      -1.861  67.294  15.980  1.00 25.00           C
ATOM    157  CA  PHE   157      -4.306  65.763  13.460  1.00 25.00           C
ATOM    158  CA  TYR   158      -2.686  62.326  13.938  1.00 25.00           C
ATOM    159  CA  TYR   159      -2.978  62.690  17.739  1.00 25.00           C
ATOM    160  CA  LEU   160      -6.671  63.640  17.390  1.00 25.00           C
ATOM    161  CA  CYS   161      -7.271  60.586  15.158  1.00 25.00           C
ATOM    162  CA  GLY   162      -5.543  58.336  17.731  1.00 25.00           C
ATOM    163  CA  LYS   163      -7.717  59.811  20.517  1.00 25.00           C
ATOM    164  CA  PHE   164     -10.864  59.188  18.425  1.00 25.00           C
ATOM    165  CA  GLY   165     -10.175  56.281  16.123  1.00 25.00           C
ATOM    166  CA  LEU   166      -9.554  56.771  12.374  1.00 25.00           C
ATOM    167  CA  TYR   167      -6.072  57.333  11.041  1.00 25.00           C
ATOM    168  CA  PRO   168      -6.489  60.717   9.394  1.00 25.00           C
ATOM    169  CA  LYS   169      -9.563  59.411   7.520  1.00 25.00           C
ATOM    170  CA  GLN   170     -11.765  62.009   9.272  1.00 25.00           C
ATOM    171  CA  ILE   171     -15.228  62.577   7.764  1.00 25.00           C
ATOM    172  CA  LEU   172     -15.659  66.254   8.771  1.00 25.00           C
ATOM    173  CA  PHE   173     -14.391  69.778   9.568  1.00 25.00           C
ATOM    174  CA  VAL   174     -15.669  72.954  11.236  1.00 25.00           C
ATOM    175  CA  GLY   175     -16.934  76.149  12.905  1.00 25.00           C
ATOM    176  CA  ASP   176     -13.098  76.518  12.662  1.00 25.00           C
ATOM    177  CA  SER   177      -9.656  78.013  11.948  1.00 25.00           C
ATOM    178  CA  GLN   178      -7.448  78.460   8.861  1.00 25.00           C
ATOM    179  CA  ASN   179      -4.028  77.091   9.909  1.00 25.00           C
ATOM    180  CA  ASP   180      -5.731  74.375  12.005  1.00 25.00           C
ATOM    181  CA  ILE   181      -7.949  73.434   9.028  1.00 25.00           C
ATOM    182  CA  PHE   182      -4.867  73.223   6.766  1.00 25.00           C
ATOM    183  CA  ALA   183      -3.109  70.984   9.328  1.00 25.00           C
ATOM    184  CA  ALA   184      -6.192  68.720   9.500  1.00 25.00           C
ATOM    185  CA  HIS   185      -6.270  68.491   5.678  1.00 25.00           C
ATOM    186  CA  SER   186      -2.550  67.582   5.633  1.00 25.00           C
ATOM    187  CA  ALA   187      -3.598  64.299   7.242  1.00 25.00           C
ATOM    188  CA  GLY   188      -5.482  63.242   4.112  1.00 25.00           C
ATOM    189  CA  CYS   189      -8.858  64.192   5.507  1.00 25.00           C
ATOM    190  CA  ALA   190     -11.017  67.047   6.656  1.00 25.00           C
ATOM    191  CA  VAL   191     -10.442  70.627   5.354  1.00 25.00           C
ATOM    192  CA  VAL   192     -12.231  73.805   6.275  1.00 25.00           C
ATOM    193  CA  GLY   193     -12.227  77.366   7.598  1.00 25.00           C
ATOM    194  CA  LEU   194     -15.148  79.364   9.033  1.00 25.00           C
ATOM    195  CA  THR   195     -15.851  81.764  11.809  1.00 25.00           C
ATOM    196  CA  TYR   196     -19.261  80.786  13.114  1.00 25.00           C
ATOM    197  CA  GLY   197     -20.573  80.665   9.569  1.00 25.00           C
ATOM    198  CA  TYR   198     -19.116  79.426   6.244  1.00 25.00           C
ATOM    199  CA  ASN   199     -17.023  79.076   3.102  1.00 25.00           C
ATOM    200  CA  TYR   200     -14.111  81.351   4.003  1.00 25.00           C
ATOM    201  CA  ASN   201     -11.634  83.531   2.223  1.00 25.00           C
ATOM    202  CA  ILE   202      -9.815  82.922  -1.092  1.00 25.00           C
ATOM    203  CA  PRO   203      -6.804  81.493   0.795  1.00 25.00           C
ATOM    204  CA  ILE   204      -9.117  79.185   2.791  1.00 25.00           C
ATOM    205  CA  ALA   205     -10.774  78.001  -0.453  1.00 25.00           C
ATOM    206  CA  GLN   206      -7.334  77.308  -1.986  1.00 25.00           C
ATOM    207  CA  SER   207      -5.106  74.302  -1.650  1.00 25.00           C
ATOM    208  CA  LYS   208      -6.802  73.475   1.650  1.00 25.00           C
ATOM    209  CA  PRO   209     -10.138  72.021   0.554  1.00 25.00           C
ATOM    210  CA  ASP   210     -13.113  69.674   0.993  1.00 25.00           C
ATOM    211  CA  TRP   211     -16.507  69.262   2.526  1.00 25.00           C
ATOM    212  CA  ILE   212     -18.394  72.481   3.214  1.00 25.00           C
ATOM    213  CA  PHE   213     -21.280  73.755   5.407  1.00 25.00           C
ATOM    214  CA  ASP   214     -23.441  76.125   3.283  1.00 25.00           C
ATOM    215  CA  ASP   215     -22.507  79.680   2.306  1.00 25.00           C
ATOM    216  CA  PHE   216     -21.137  83.193   2.778  1.00 25.00           C
ATOM    217  CA  ALA   217     -20.622  86.967   2.385  1.00 25.00           C
ATOM    218  CA  ASP   218     -20.837  87.417   6.181  1.00 25.00           C
ATOM    219  CA  ILE   219     -18.265  84.624   6.683  1.00 25.00           C
ATOM    220  CA  LEU   220     -15.932  86.281   4.138  1.00 25.00           C
ATOM    221  CA  LYS   221     -16.302  89.637   5.947  1.00 25.00           C
ATOM    222  CA  ILE   222     -15.496  87.951   9.290  1.00 25.00           C
ATOM    223  CA  THR   223     -12.394  86.318   7.747  1.00 25.00           C
ATOM    224  CA  GLN   224     -10.684  89.164   5.826  1.00 25.00           C
TER
END
