
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  101 (  101),  selected  101 , name T0304TS599_2-D1
# Molecule2: number of CA atoms  101 (  799),  selected  101 , name T0304_D1.pdb
# PARAMETERS: T0304TS599_2-D1.T0304_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        48 - 91          4.91    11.90
  LONGEST_CONTINUOUS_SEGMENT:    44        49 - 92          4.84    12.29
  LCS_AVERAGE:     30.09

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30        56 - 85          1.97    11.88
  LONGEST_CONTINUOUS_SEGMENT:    30        57 - 86          1.91    11.86
  LCS_AVERAGE:     15.78

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        63 - 84          0.91    12.45
  LONGEST_CONTINUOUS_SEGMENT:    22        64 - 85          0.89    12.54
  LCS_AVERAGE:     10.23

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  101
LCS_GDT     R      17     R      17      3    5   15     3    4    4    6    6    6    8    9   11   27   30   31   38   45   46   51   55   56   63   66 
LCS_GDT     P      18     P      18      4    5   15     3    4    4    6    6    6    8   26   27   30   33   35   43   46   50   53   59   62   64   68 
LCS_GDT     W      19     W      19      4    5   15     3    4    4    6    6    6   26   31   33   37   39   42   46   49   53   58   60   62   65   68 
LCS_GDT     W      20     W      20      4    5   16     3    4    4    6    7    8    9   14   27   33   39   43   46   49   53   58   60   62   65   68 
LCS_GDT     G      21     G      21      4    5   16     3    4    4    6   15   16   21   26   32   35   41   43   46   49   53   58   60   62   65   68 
LCS_GDT     L      22     L      22      4    5   16     3    4    4   11   16   17   20   22   26   29   33   37   42   46   53   58   60   62   65   68 
LCS_GDT     P      23     P      23      4    5   16     3    3    4    4    6    9   10   20   23   29   33   37   45   48   53   57   60   62   65   68 
LCS_GDT     C      24     C      24      4    5   16     3    3    4    6   11   17   19   21   26   29   33   37   40   46   51   55   59   62   65   68 
LCS_GDT     T      25     T      25      4    5   16     3    4    5    6    7    9   10   13   20   20   30   35   43   48   53   57   59   62   65   68 
LCS_GDT     V      26     V      26      4    5   16     3    4    5    6    7    9   10   13   20   20   34   46   50   50   51   57   59   62   65   68 
LCS_GDT     T      27     T      27      4    5   16     3    4    5    6    7   12   15   15   20   20   27   35   50   50   53   57   59   62   65   68 
LCS_GDT     P      28     P      28      4    5   16     2    4    5    6    9   12   15   15   20   20   27   37   50   50   51   57   59   62   64   68 
LCS_GDT     C      29     C      29      3    4   16     3    3    4    4    4    8   15   15   20   20   27   35   50   50   51   57   59   62   65   68 
LCS_GDT     F      30     F      30      3    4   16     3    3    9   20   23   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     G      31     G      31      3    3   16     3    3    3   16   19   25   28   34   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     A      32     A      32      3    3   16     3    3    3    4   12   23   28   33   37   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     R      33     R      33      3    3   16     3    3    3    4    5    7   15   18   22   39   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      34     L      34      3    3   16     3    3    3    3    4    8   19   23   27   33   39   43   46   49   53   58   60   62   65   68 
LCS_GDT     V      35     V      35      3    3   16     3    4    4    4    4    6    8    8   16   23   28   36   42   47   53   58   60   62   65   68 
LCS_GDT     Q      36     Q      36      4    4   16     3    4    4    4    4    6    8    9   11   14   25   36   42   47   53   58   60   62   65   68 
LCS_GDT     E      37     E      37      4    4   16     3    4    4    4    4    5    6    8   11   13   24   31   37   45   51   56   60   62   63   68 
LCS_GDT     G      38     G      38      4    6   16     3    4    4    5    6    7    8    8   11   13   14   17   23   30   36   42   47   50   56   60 
LCS_GDT     N      39     N      39      5    6   16     3    4    5    5    6    7    8    9   11   13   15   18   21   26   30   36   40   45   48   51 
LCS_GDT     R      40     R      40      5    6   16     3    4    5    5    6    7    8    9   13   16   18   20   21   24   28   32   37   43   47   51 
LCS_GDT     L      41     L      41      5    6   23     3    4    5    5    6    7    8    9   14   16   18   20   21   24   28   32   37   43   47   51 
LCS_GDT     H      42     H      42      5    6   23     3    4    5    5    6    7    8    9   14   16   18   20   21   23   27   31   36   43   47   51 
LCS_GDT     Y      43     Y      43      5    6   23     3    4    5    5    6    7    8   10   13   16   17   18   20   23   24   27   32   35   40   47 
LCS_GDT     L      44     L      44      6    6   23     5    6    6    7    7    8    9   11   13   16   17   18   20   23   24   30   34   42   47   51 
LCS_GDT     A      45     A      45      6    6   24     5    6    6    7    7    8    9   11   13   16   20   32   39   44   50   56   60   62   63   68 
LCS_GDT     D      46     D      46      6    6   25     5    6    6    7    7    8   10   12   14   19   24   32   39   46   51   58   60   62   63   68 
LCS_GDT     R      47     R      47      6    6   27     5    6    6    7    7    8   10   11   14   16   18   21   23   30   32   41   44   50   53   60 
LCS_GDT     A      48     A      48      6    6   44     5    6    6    7    7    8   10   11   14   16   18   22   27   33   39   46   50   56   59   65 
LCS_GDT     G      49     G      49      6    6   44     0    3    5    7    7    8   12   15   19   23   28   35   42   46   52   58   60   62   65   68 
LCS_GDT     I      50     I      50      4   19   44     3    3   10   15   18   23   28   32   37   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     R      51     R      51      4   21   44     3    3    5    6    6   11   22   25   28   34   36   46   50   50   51   55   59   62   65   68 
LCS_GDT     G      52     G      52      3   21   44     3    4    4    7   16   20   23   26   30   34   43   46   50   50   53   57   59   62   65   68 
LCS_GDT     L      53     L      53     16   26   44    13   14   17   20   23   29   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     F      54     F      54     16   26   44    13   14   17   20   23   29   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     S      55     S      55     16   26   44    13   14   17   20   23   29   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     D      56     D      56     16   30   44    13   14   17   20   23   29   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     A      57     A      57     16   30   44    13   14   17   20   25   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     D      58     D      58     16   30   44    13   14   17   20   25   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     A      59     A      59     16   30   44    13   14   17   20   25   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     Y      60     Y      60     16   30   44    13   14   17   22   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     H      61     H      61     16   30   44    13   14   18   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      62     L      62     16   30   44    13   14   18   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     D      63     D      63     22   30   44    13   14   19   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     Q      64     Q      64     22   30   44    13   14   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     A      65     A      65     22   30   44    13   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     F      66     F      66     22   30   44    13   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     P      67     P      67     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      68     L      68     22   30   44    13   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      69     L      69     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     M      70     M      70     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     K      71     K      71     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     Q      72     Q      72     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      73     L      73     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     E      74     E      74     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      75     L      75     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     M      76     M      76     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      77     L      77     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     T      78     T      78     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     S      79     S      79     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     G      80     G      80     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     E      81     E      81     22   30   44    14   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     L      82     L      82     22   30   44     6   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     N      83     N      83     22   30   44     6   19   21   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     P      84     P      84     22   30   44     4    7   21   25   26   30   35   36   38   41   43   46   50   50   53   57   60   62   65   68 
LCS_GDT     R      85     R      85     22   30   44     7   11   17   25   26   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     H      86     H      86      6   30   44     4    5    6    8   22   30   35   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     Q      87     Q      87      7   25   44     3    6    7    8   11   11   12   13   15   19   38   45   50   50   51   54   57   61   65   67 
LCS_GDT     H      88     H      88      7   11   44     3    6    7    8   11   11   13   31   38   41   43   46   50   50   52   58   60   62   65   68 
LCS_GDT     T      89     T      89      7   11   44     3    6    9   15   19   26   30   36   38   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     V      90     V      90      7   11   44     3    6    7    8   11   11   12   24   27   33   36   40   45   49   51   58   60   62   65   66 
LCS_GDT     T      91     T      91      7   11   44     3    6    7    8   11   11   12   13   14   18   24   28   40   44   47   50   55   58   62   64 
LCS_GDT     L      92     L      92      7   11   44     3    6    7    8   11   11   12   13   14   18   19   23   25   30   33   35   36   39   42   48 
LCS_GDT     Y      93     Y      93      7   11   22     3    5    7    8   11   11   12   13   14   18   19   23   25   30   33   35   36   38   42   47 
LCS_GDT     A      94     A      94      6   11   22     3    5    7    8   11   11   12   13   14   18   19   23   25   30   33   35   36   38   40   41 
LCS_GDT     K      95     K      95      5   11   22     3    4    5    8   11   11   12   13   14   16   19   23   25   30   33   35   36   38   40   45 
LCS_GDT     G      96     G      96      6   11   22     3    5    6    8   11   11   12   13   14   16   19   25   27   31   34   36   39   44   48   53 
LCS_GDT     L      97     L      97      6   11   22     3    5    6    8   11   11   12   13   14   16   19   25   28   32   35   37   48   50   54   60 
LCS_GDT     T      98     T      98      6   10   22     3    5    6    7    8   11   12   16   24   32   37   41   44   48   53   58   60   62   64   66 
LCS_GDT     C      99     C      99      6    8   22     3    5    6    7    8    8   13   17   25   33   37   41   46   49   53   58   60   62   65   68 
LCS_GDT     K     100     K     100      6    8   22     3    5    6   19   20   25   30   36   37   41   43   46   50   50   53   58   60   62   65   68 
LCS_GDT     A     101     A     101      6    8   22     3    5    6    7    8   12   20   27   34   39   41   46   50   50   53   58   60   62   65   68 
LCS_GDT     D     102     D     102      3    8   22     3    3    5    5    8    8    9   11   17   18   23   31   41   42   53   57   59   61   65   68 
LCS_GDT     T     103     T     103      3    5   22     3    4    4    4    5    5    7   13   15   18   21   30   36   41   49   51   53   57   64   68 
LCS_GDT     L     104     L     104      3   14   22     3    3    4    6   10   13   14   14   17   18   23   37   41   46   53   57   59   61   65   68 
LCS_GDT     S     105     S     105      3   14   22     3    6    6   11   11   13   14   14   15   18   19   23   25   31   34   48   50   57   59   68 
LCS_GDT     S     106     S     106      3   14   22     3    4    4    4    7   13   14   14   15   18   19   23   25   30   33   35   40   44   54   56 
LCS_GDT     C     107     C     107      9   14   22     3    6   10   10   11   13   14   14   15   18   19   30   36   41   44   48   53   57   60   65 
LCS_GDT     D     108     D     108     10   14   21     3    9   10   11   11   13   14   14   15   17   21   30   36   41   49   51   53   57   64   65 
LCS_GDT     Y     109     Y     109     10   14   21     4    9   10   11   11   13   14   14   16   18   22   31   41   41   53   57   59   61   64   68 
LCS_GDT     V     110     V     110     10   14   21     4    9   10   11   18   20   21   23   26   31   38   42   46   49   53   58   60   62   65   68 
LCS_GDT     Y     111     Y     111     10   14   21     3    9   10   11   11   13   14   14   23   25   33   42   46   49   53   58   60   62   65   68 
LCS_GDT     L     112     L     112     10   14   21     3    9   10   11   11   13   14   14   19   25   29   36   45   49   53   58   60   62   65   68 
LCS_GDT     A     113     A     113     10   14   21     4    9   10   11   11   13   14   14   15   18   18   28   39   47   53   58   60   62   64   68 
LCS_GDT     V     114     V     114     10   14   21     4    9   10   11   11   13   14   14   15   18   18   22   25   30   33   46   48   55   59   64 
LCS_GDT     Y     115     Y     115     10   14   21     3    9   10   11   11   13   14   14   15   18   19   23   25   30   33   46   48   55   59   64 
LCS_GDT     P     116     P     116     10   14   21     3    9   10   11   11   13   14   14   15   18   19   23   25   30   33   35   39   44   49   53 
LCS_GDT     T     117     T     117     10   14   21     3    6   10   11   11   13   14   14   15   17   19   23   25   30   33   35   36   38   40   41 
LCS_AVERAGE  LCS_A:  18.70  (  10.23   15.78   30.09 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     19     21     25     26     30     35     36     38     41     43     46     50     50     53     58     60     62     65     68 
GDT PERCENT_CA  13.86  18.81  20.79  24.75  25.74  29.70  34.65  35.64  37.62  40.59  42.57  45.54  49.50  49.50  52.48  57.43  59.41  61.39  64.36  67.33
GDT RMS_LOCAL    0.36   0.49   0.70   1.24   1.41   1.91   2.31   2.39   2.68   2.94   3.24   3.61   3.95   3.95   4.87   5.42   5.66   5.51   5.71   6.07
GDT RMS_ALL_CA  12.78  12.69  12.64  12.16  12.08  11.86  11.90  11.83  12.04  11.91  11.95  12.07  12.42  12.42  11.61  11.00  11.00  11.37  11.41  11.36

#      Molecule1      Molecule2       DISTANCE
LGA    R      17      R      17         12.235
LGA    P      18      P      18         10.467
LGA    W      19      W      19          6.504
LGA    W      20      W      20          8.886
LGA    G      21      G      21          6.994
LGA    L      22      L      22          9.836
LGA    P      23      P      23          9.626
LGA    C      24      C      24         10.245
LGA    T      25      T      25         10.569
LGA    V      26      V      26          9.586
LGA    T      27      T      27          9.362
LGA    P      28      P      28          9.841
LGA    C      29      C      29          9.253
LGA    F      30      F      30          2.566
LGA    G      31      G      31          4.888
LGA    A      32      A      32          5.557
LGA    R      33      R      33          5.773
LGA    L      34      L      34          8.689
LGA    V      35      V      35         11.532
LGA    Q      36      Q      36         11.231
LGA    E      37      E      37         13.730
LGA    G      38      G      38         19.096
LGA    N      39      N      39         21.893
LGA    R      40      R      40         23.574
LGA    L      41      L      41         22.032
LGA    H      42      H      42         22.395
LGA    Y      43      Y      43         22.873
LGA    L      44      L      44         20.596
LGA    A      45      A      45         14.634
LGA    D      46      D      46         14.641
LGA    R      47      R      47         18.816
LGA    A      48      A      48         15.736
LGA    G      49      G      49         10.577
LGA    I      50      I      50          5.446
LGA    R      51      R      51          9.786
LGA    G      52      G      52          9.271
LGA    L      53      L      53          3.214
LGA    F      54      F      54          2.838
LGA    S      55      S      55          2.917
LGA    D      56      D      56          2.156
LGA    A      57      A      57          1.334
LGA    D      58      D      58          1.291
LGA    A      59      A      59          0.666
LGA    Y      60      Y      60          1.084
LGA    H      61      H      61          1.283
LGA    L      62      L      62          1.663
LGA    D      63      D      63          2.236
LGA    Q      64      Q      64          3.152
LGA    A      65      A      65          3.625
LGA    F      66      F      66          3.562
LGA    P      67      P      67          2.963
LGA    L      68      L      68          2.209
LGA    L      69      L      69          2.477
LGA    M      70      M      70          2.256
LGA    K      71      K      71          1.040
LGA    Q      72      Q      72          1.070
LGA    L      73      L      73          1.615
LGA    E      74      E      74          0.375
LGA    L      75      L      75          1.377
LGA    M      76      M      76          2.068
LGA    L      77      L      77          1.176
LGA    T      78      T      78          1.938
LGA    S      79      S      79          3.177
LGA    G      80      G      80          3.459
LGA    E      81      E      81          3.970
LGA    L      82      L      82          3.484
LGA    N      83      N      83          3.405
LGA    P      84      P      84          3.840
LGA    R      85      R      85          0.870
LGA    H      86      H      86          2.590
LGA    Q      87      Q      87          7.535
LGA    H      88      H      88          6.908
LGA    T      89      T      89          6.737
LGA    V      90      V      90         10.679
LGA    T      91      T      91         14.015
LGA    L      92      L      92         19.038
LGA    Y      93      Y      93         22.114
LGA    A      94      A      94         26.847
LGA    K      95      K      95         27.763
LGA    G      96      G      96         21.266
LGA    L      97      L      97         16.878
LGA    T      98      T      98         10.303
LGA    C      99      C      99          7.429
LGA    K     100      K     100          3.689
LGA    A     101      A     101          5.627
LGA    D     102      D     102         10.567
LGA    T     103      T     103         13.195
LGA    L     104      L     104         10.260
LGA    S     105      S     105         13.378
LGA    S     106      S     106         16.795
LGA    C     107      C     107         15.601
LGA    D     108      D     108         13.177
LGA    Y     109      Y     109         11.417
LGA    V     110      V     110          8.118
LGA    Y     111      Y     111          8.907
LGA    L     112      L     112          8.886
LGA    A     113      A     113         10.347
LGA    V     114      V     114         15.010
LGA    Y     115      Y     115         15.733
LGA    P     116      P     116         20.725
LGA    T     117      T     117         21.560

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  101  101    4.0     36    2.39    34.158    29.545     1.444

LGA_LOCAL      RMSD =  2.394  Number of atoms =   36  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 11.585  Number of atoms =  101 
Std_ALL_ATOMS  RMSD = 10.691  (standard rmsd on all 101 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.093447 * X  +   0.047780 * Y  +   0.994477 * Z  +  40.911068
  Y_new =  -0.913679 * X  +   0.392714 * Y  +  -0.104722 * Z  +  26.627045
  Z_new =  -0.395548 * X  +  -0.918419 * Y  +   0.006958 * Z  +  41.914455 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.563221    1.578372  [ DEG:   -89.5659     90.4341 ]
  Theta =   0.406665    2.734928  [ DEG:    23.3002    156.6998 ]
  Phi   =  -1.672717    1.468876  [ DEG:   -95.8396     84.1604 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS599_2-D1                               
REMARK     2: T0304_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS599_2-D1.T0304_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  101  101   4.0   36   2.39  29.545    10.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS599_2-D1
PFRMAT TS                                                                       
TARGET T0304                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM     17  CA  ARG    17      25.961  25.315  47.112  1.00  0.00              
ATOM     18  CA  PRO    18      28.219  28.233  47.690  1.00  0.00              
ATOM     19  CA  TRP    19      31.546  26.637  46.668  1.00  0.00              
ATOM     20  CA  TRP    20      30.656  25.198  43.296  1.00  0.00              
ATOM     21  CA  GLY    21      33.858  25.516  41.339  1.00  0.00              
ATOM     22  CA  LEU    22      34.141  22.799  38.715  1.00  0.00              
ATOM     23  CA  PRO    23      35.454  23.565  35.368  1.00  0.00              
ATOM     24  CA  CYS    24      33.328  21.650  32.917  1.00  0.00              
ATOM     25  CA  THR    25      36.200  20.102  30.930  1.00  0.00              
ATOM     26  CA  VAL    26      38.227  18.605  33.759  1.00  0.00              
ATOM     27  CA  THR    27      41.861  17.525  33.494  1.00  0.00              
ATOM     28  CA  PRO    28      42.914  15.034  36.218  1.00  0.00              
ATOM     29  CA  CYS    29      46.050  16.907  37.254  1.00  0.00              
ATOM     30  CA  PHE    30      43.898  20.053  37.817  1.00  0.00              
ATOM     31  CA  GLY    31      41.064  18.217  39.580  1.00  0.00              
ATOM     32  CA  ALA    32      43.438  16.952  42.297  1.00  0.00              
ATOM     33  CA  ARG    33      44.542  20.548  42.886  1.00  0.00              
ATOM     34  CA  LEU    34      40.926  21.759  43.181  1.00  0.00              
ATOM     35  CA  VAL    35      40.030  18.990  45.696  1.00  0.00              
ATOM     36  CA  GLN    36      43.116  19.817  47.667  1.00  0.00              
ATOM     37  CA  GLU    37      42.294  23.550  47.892  1.00  0.00              
ATOM     38  CA  GLY    38      38.826  22.967  49.235  1.00  0.00              
ATOM     39  CA  ASN    39      36.750  24.160  46.319  1.00  0.00              
ATOM     40  CA  ARG    40      33.851  21.776  45.860  1.00  0.00              
ATOM     41  CA  LEU    41      32.881  20.994  42.287  1.00  0.00              
ATOM     42  CA  HIS    42      30.922  17.790  42.506  1.00  0.00              
ATOM     43  CA  TYR    43      28.011  17.538  40.052  1.00  0.00              
ATOM     44  CA  LEU    44      29.891  18.525  36.869  1.00  0.00              
ATOM     45  CA  ALA    45      32.973  16.513  37.766  1.00  0.00              
ATOM     46  CA  ASP    46      30.962  13.308  38.339  1.00  0.00              
ATOM     47  CA  ARG    47      28.985  13.333  35.144  1.00  0.00              
ATOM     48  CA  ALA    48      32.082  13.518  33.002  1.00  0.00              
ATOM     49  CA  GLY    49      34.139  11.029  35.070  1.00  0.00              
ATOM     50  CA  ILE    50      36.909  13.357  36.296  1.00  0.00              
ATOM     51  CA  ARG    51      39.808  11.142  35.151  1.00  0.00              
ATOM     52  CA  GLY    52      38.284  10.192  31.790  1.00  0.00              
ATOM     53  CA  LEU    53      37.215  13.640  30.577  1.00  0.00              
ATOM     54  CA  PHE    54      40.469  15.049  29.380  1.00  0.00              
ATOM     55  CA  SER    55      42.254  14.160  26.160  1.00  0.00              
ATOM     56  CA  ASP    56      45.740  12.786  27.039  1.00  0.00              
ATOM     57  CA  ALA    57      47.536  15.852  25.675  1.00  0.00              
ATOM     58  CA  ASP    58      45.542  18.175  27.895  1.00  0.00              
ATOM     59  CA  ALA    59      46.275  16.084  30.984  1.00  0.00              
ATOM     60  CA  TYR    60      49.984  16.266  30.429  1.00  0.00              
ATOM     61  CA  HIS    61      49.923  20.059  29.784  1.00  0.00              
ATOM     62  CA  LEU    62      47.819  20.897  32.849  1.00  0.00              
ATOM     63  CA  ASP    63      49.980  18.778  35.198  1.00  0.00              
ATOM     64  CA  GLN    64      53.148  20.386  33.941  1.00  0.00              
ATOM     65  CA  ALA    65      51.833  23.935  34.317  1.00  0.00              
ATOM     66  CA  PHE    66      50.552  23.502  37.881  1.00  0.00              
ATOM     67  CA  PRO    67      53.682  21.996  39.283  1.00  0.00              
ATOM     68  CA  LEU    68      55.773  24.823  37.761  1.00  0.00              
ATOM     69  CA  LEU    69      53.405  27.455  39.161  1.00  0.00              
ATOM     70  CA  MET    70      53.377  25.927  42.609  1.00  0.00              
ATOM     71  CA  LYS    71      57.171  25.746  42.738  1.00  0.00              
ATOM     72  CA  GLN    72      57.574  29.345  41.688  1.00  0.00              
ATOM     73  CA  LEU    73      55.101  30.363  44.322  1.00  0.00              
ATOM     74  CA  GLU    74      56.953  28.355  47.015  1.00  0.00              
ATOM     75  CA  LEU    75      60.214  30.110  46.179  1.00  0.00              
ATOM     76  CA  MET    76      58.448  33.504  46.414  1.00  0.00              
ATOM     77  CA  LEU    77      56.858  32.579  49.793  1.00  0.00              
ATOM     78  CA  THR    78      60.169  31.416  51.275  1.00  0.00              
ATOM     79  CA  SER    79      61.882  34.662  50.098  1.00  0.00              
ATOM     80  CA  GLY    80      59.341  36.945  51.636  1.00  0.00              
ATOM     81  CA  GLU    81      57.795  38.405  48.551  1.00  0.00              
ATOM     82  CA  LEU    82      54.364  37.128  49.426  1.00  0.00              
ATOM     83  CA  ASN    83      53.264  38.151  52.935  1.00  0.00              
ATOM     84  CA  PRO    84      51.505  36.065  55.538  1.00  0.00              
ATOM     85  CA  ARG    85      48.026  37.586  54.981  1.00  0.00              
ATOM     86  CA  HIS    86      48.309  37.066  51.243  1.00  0.00              
ATOM     87  CA  GLN    87      49.452  33.402  51.313  1.00  0.00              
ATOM     88  CA  HIS    88      47.182  32.269  48.693  1.00  0.00              
ATOM     89  CA  THR    89      44.119  34.472  48.886  1.00  0.00              
ATOM     90  CA  VAL    90      40.989  33.041  47.446  1.00  0.00              
ATOM     91  CA  THR    91      38.279  35.246  46.055  1.00  0.00              
ATOM     92  CA  LEU    92      34.971  33.802  45.047  1.00  0.00              
ATOM     93  CA  TYR    93      32.911  35.684  42.493  1.00  0.00              
ATOM     94  CA  ALA    94      29.372  34.768  41.813  1.00  0.00              
ATOM     95  CA  LYS    95      28.931  35.701  38.216  1.00  0.00              
ATOM     96  CA  GLY    96      32.060  34.813  36.506  1.00  0.00              
ATOM     97  CA  LEU    97      35.634  35.753  37.437  1.00  0.00              
ATOM     98  CA  THR    98      38.180  33.133  36.548  1.00  0.00              
ATOM     99  CA  CYS    99      41.693  33.284  37.874  1.00  0.00              
ATOM    100  CA  LYS   100      44.358  31.951  35.581  1.00  0.00              
ATOM    101  CA  ALA   101      47.085  29.813  37.039  1.00  0.00              
ATOM    102  CA  ASP   102      49.872  32.210  35.984  1.00  0.00              
ATOM    103  CA  THR   103      48.434  35.628  36.937  1.00  0.00              
ATOM    104  CA  LEU   104      46.868  34.555  40.254  1.00  0.00              
ATOM    105  CA  SER   105      49.964  32.602  41.166  1.00  0.00              
ATOM    106  CA  SER   106      52.392  35.507  40.539  1.00  0.00              
ATOM    107  CA  CYS   107      50.455  37.986  42.702  1.00  0.00              
ATOM    108  CA  ASP   108      49.020  35.625  45.323  1.00  0.00              
ATOM    109  CA  TYR   109      45.307  35.838  44.461  1.00  0.00              
ATOM    110  CA  VAL   110      43.100  33.094  43.184  1.00  0.00              
ATOM    111  CA  TYR   111      39.847  34.064  41.595  1.00  0.00              
ATOM    112  CA  LEU   112      37.170  31.531  41.182  1.00  0.00              
ATOM    113  CA  ALA   113      34.142  32.254  39.094  1.00  0.00              
ATOM    114  CA  VAL   114      30.867  30.499  39.731  1.00  0.00              
ATOM    115  CA  TYR   115      28.279  30.267  36.916  1.00  0.00              
ATOM    116  CA  PRO   116      24.726  29.057  37.331  1.00  0.00              
ATOM    117  CA  THR   117      24.395  25.710  35.475  1.00  0.00              
TER                                                                             
END
