
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  101 (  101),  selected  101 , name T0304TS599_5-D1
# Molecule2: number of CA atoms  101 (  799),  selected  101 , name T0304_D1.pdb
# PARAMETERS: T0304TS599_5-D1.T0304_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    50        50 - 99          4.98    12.75
  LCS_AVERAGE:     34.70

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        53 - 81          1.95    10.88
  LONGEST_CONTINUOUS_SEGMENT:    29        54 - 82          2.00    10.70
  LCS_AVERAGE:     15.19

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        62 - 81          0.99    10.69
  LONGEST_CONTINUOUS_SEGMENT:    20        63 - 82          0.96    10.87
  LONGEST_CONTINUOUS_SEGMENT:    20        64 - 83          0.97    11.28
  LCS_AVERAGE:      9.38

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  101
LCS_GDT     R      17     R      17      3    5   15     3    3    3    5    6    7    9    9   14   22   29   36   42   48   54   61   64   69   72   73 
LCS_GDT     P      18     P      18      4    7   15     3    3    4    5    6    7   12   12   14   16   21   29   40   47   54   61   64   69   72   73 
LCS_GDT     W      19     W      19      4    7   15     3    3    4    5    5    7   12   12   14   15   18   26   40   47   54   61   64   69   72   73 
LCS_GDT     W      20     W      20      4    7   15     3    3    4    5    7    9   12   12   16   19   23   28   38   47   53   60   64   69   72   73 
LCS_GDT     G      21     G      21      4    7   15     3    4    4    5    7    9   12   14   16   21   25   29   39   47   53   61   64   69   72   73 
LCS_GDT     L      22     L      22      4    7   15     3    4    4   10   15   16   19   23   25   27   30   33   37   41   49   56   60   66   72   73 
LCS_GDT     P      23     P      23      4    7   15     3    4    4    5    6    9   10   13   14   26   28   32   37   41   47   55   59   63   69   73 
LCS_GDT     C      24     C      24      4    7   15     3    4    4    5    7    9   10   13   25   27   30   32   36   39   43   49   57   63   67   73 
LCS_GDT     T      25     T      25      4    7   15     3    4    4    5    7    9   10   13   14   14   19   28   34   37   41   43   45   63   67   73 
LCS_GDT     V      26     V      26      4    7   15     3    4    4    5    7    9   10   13   14   14   37   39   39   42   47   50   57   63   67   71 
LCS_GDT     T      27     T      27      4    5   15     3    4    4    5    7    9   10   13   16   17   24   28   30   37   54   57   62   63   67   73 
LCS_GDT     P      28     P      28      4    5   15     3    4    4    5    7    9   10   13   16   17   24   28   32   35   54   57   62   63   67   71 
LCS_GDT     C      29     C      29      3    4   15     3    3    3    4    4    7    8   13   16   17   24   41   44   49   54   57   62   63   67   73 
LCS_GDT     F      30     F      30      3    4   15     3    8   15   21   26   29   33   35   37   39   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     G      31     G      31      3    3   15     3   11   15   19   25   28   30   32   35   37   39   43   47   51   55   60   64   69   72   73 
LCS_GDT     A      32     A      32      3    3   15     3    3    4    7   20   25   30   32   35   36   39   43   44   50   53   60   64   69   72   73 
LCS_GDT     R      33     R      33      3    3   15     3    3    4   13   21   27   30   32   35   37   39   43   47   51   55   61   64   69   72   73 
LCS_GDT     L      34     L      34      3    3   16     3    3    4    8   13   16   18   21   24   28   33   36   43   48   54   61   64   69   72   73 
LCS_GDT     V      35     V      35      3    3   16     3    4    4    4    5    7   12   12   14   19   24   28   35   43   51   56   62   69   72   73 
LCS_GDT     Q      36     Q      36      4    4   16     3    4    4    4    5    5   12   12   14   16   24   28   34   39   51   56   61   67   72   73 
LCS_GDT     E      37     E      37      4    4   16     3    4    4    4    4    5    7   12   14   19   24   28   33   38   50   56   62   69   72   73 
LCS_GDT     G      38     G      38      4    6   16     3    4    4    6    6    8    8    9   11   12   16   22   29   30   35   38   40   45   48   51 
LCS_GDT     N      39     N      39      5    6   16     4    4    5    6    6    8    8    9   11   13   15   19   22   26   31   35   38   43   45   48 
LCS_GDT     R      40     R      40      5    6   16     4    4    5    6    6    8    8    9   11   12   13   17   21   24   28   33   36   39   41   46 
LCS_GDT     L      41     L      41      5    6   16     4    4    5    6    6    8    8    9   11   15   16   18   21   26   29   35   38   40   44   48 
LCS_GDT     H      42     H      42      5    6   18     4    4    5    6    6    8    8    9   11   13   16   18   21   22   24   27   33   37   40   43 
LCS_GDT     Y      43     Y      43      5    6   18     3    4    5    6    6    8    8    9   12   13   15   16   18   20   22   26   30   34   37   40 
LCS_GDT     L      44     L      44      6    6   18     4    6    6    7    7    8    9    9   11   13   15   16   18   19   22   25   30   36   40   44 
LCS_GDT     A      45     A      45      6    6   18     4    6    6    7    7    8   12   12   14   16   21   24   27   38   48   55   62   69   72   73 
LCS_GDT     D      46     D      46      6    6   18     4    6    6    7    7    8   12   12   15   19   23   26   32   41   51   56   62   69   72   73 
LCS_GDT     R      47     R      47      6    6   26     4    6    6    7    7    8    9   12   13   15   19   22   28   30   35   37   40   44   50   55 
LCS_GDT     A      48     A      48      6    6   42     4    6    6    7    7    8    9   12   13   15   20   23   29   33   35   40   44   50   57   64 
LCS_GDT     G      49     G      49      6    6   49     0    3    4    7    7    8   11   17   18   22   28   30   37   42   51   56   60   67   72   73 
LCS_GDT     I      50     I      50      4   23   50     0    3    4   13   20   24   30   32   35   37   39   43   47   51   55   61   64   69   72   73 
LCS_GDT     R      51     R      51      4   25   50     3    3    4    5    9   24   27   31   32   35   38   41   44   49   50   57   62   63   67   73 
LCS_GDT     G      52     G      52      4   27   50     3    3    4    4    9   24   27   31   32   35   38   41   42   49   54   57   62   64   68   73 
LCS_GDT     L      53     L      53     18   29   50    11   14   18   21   26   29   33   35   37   39   43   46   48   51   55   61   64   69   72   73 
LCS_GDT     F      54     F      54     18   29   50     7   14   18   21   26   29   33   35   37   39   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     S      55     S      55     18   29   50    11   14   18   21   26   29   33   35   37   40   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     D      56     D      56     18   29   50    11   14   18   21   26   29   33   35   37   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     A      57     A      57     18   29   50    11   14   18   21   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     D      58     D      58     18   29   50    11   14   18   21   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     A      59     A      59     18   29   50    11   14   18   21   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     Y      60     Y      60     18   29   50    11   14   18   21   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     H      61     H      61     19   29   50    11   14   19   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L      62     L      62     20   29   50    11   14   19   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     D      63     D      63     20   29   50    11   14   19   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     Q      64     Q      64     20   29   50    11   14   19   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     A      65     A      65     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     F      66     F      66     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     P      67     P      67     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L      68     L      68     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L      69     L      69     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     M      70     M      70     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     K      71     K      71     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     Q      72     Q      72     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L      73     L      73     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     E      74     E      74     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L      75     L      75     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     M      76     M      76     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L      77     L      77     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     T      78     T      78     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     S      79     S      79     20   29   50    15   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     G      80     G      80     20   29   50     9   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     E      81     E      81     20   29   50     9   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L      82     L      82     20   29   50     5   12   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     N      83     N      83     20   28   50     4    6   16   21   25   28   32   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     P      84     P      84      9   27   50     4    4    8   11   15   23   30   34   36   41   45   46   48   51   55   58   62   64   66   73 
LCS_GDT     R      85     R      85      5   27   50     9   18   20   23   26   29   33   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     H      86     H      86      5   27   50     4    4    6   19   25   29   33   35   37   39   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     Q      87     Q      87      5   10   50     3    3    6    7    9   11   12   19   25   32   36   41   43   49   53   56   59   62   66   69 
LCS_GDT     H      88     H      88      6   10   50     5    6    6    7    9   10   11   15   29   37   39   43   44   49   50   56   59   62   66   71 
LCS_GDT     T      89     T      89      6   10   50     5    6    6    7    9   11   17   27   33   37   39   43   44   49   53   56   62   69   72   73 
LCS_GDT     V      90     V      90      6   10   50     5    6    6   11   15   17   21   26   33   37   39   43   44   49   54   61   64   69   72   73 
LCS_GDT     T      91     T      91      6   10   50     5    6    6    7    9   17   21   26   33   37   39   43   44   51   55   61   64   69   72   73 
LCS_GDT     L      92     L      92      6   10   50     5    6    6    8   11   15   21   26   31   37   39   43   44   51   55   61   64   69   72   73 
LCS_GDT     Y      93     Y      93      6   10   50     3    6    6   10   14   18   21   27   33   37   39   43   46   51   55   61   64   69   72   73 
LCS_GDT     A      94     A      94      6   10   50     3    5    7   11   14   18   21   27   31   35   39   43   44   49   55   61   64   69   72   73 
LCS_GDT     K      95     K      95      3    8   50     3    3    4    7    8   12   16   20   22   28   32   35   39   41   46   50   58   62   66   69 
LCS_GDT     G      96     G      96      6    8   50     4    6    6    7    7   10   16   22   22   25   31   38   39   43   47   54   59   62   66   69 
LCS_GDT     L      97     L      97      6    8   50     4    6    6    7    8   10   11   16   22   26   31   35   39   41   47   52   59   62   66   69 
LCS_GDT     T      98     T      98      6    8   50     4    6    6    7    7   10   11   16   22   26   31   35   39   41   47   54   59   62   66   71 
LCS_GDT     C      99     C      99      6    8   50     4    6    6    7    7    8    9   11   13   19   23   29   34   40   44   48   54   62   66   69 
LCS_GDT     K     100     K     100      6    8   48     3    6    6    7    7    8    8   11   14   16   20   29   34   40   44   49   55   62   66   69 
LCS_GDT     A     101     A     101      6    8   43     3    6    6    7    7    8    8   12   14   16   17   24   28   32   36   47   51   57   63   69 
LCS_GDT     D     102     D     102      3    8   23     3    3    4    7    7    8    8   12   14   16   19   24   28   32   38   47   51   57   63   69 
LCS_GDT     T     103     T     103      3    5   23     3    4    4    4    7    7   11   12   15   16   17   24   38   41   54   61   64   69   72   73 
LCS_GDT     L     104     L     104      3   12   23     3    3    4    7   20   28   32   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     S     105     S     105      3   12   23     3    4    4    4   11   28   32   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     S     106     S     106      3   12   23     3    5    6    6   10   12   12   31   38   39   41   45   48   51   55   61   64   69   72   73 
LCS_GDT     C     107     C     107      7   12   23     3    6    8    9   10   14   21   24   30   37   41   45   47   51   55   61   64   69   72   73 
LCS_GDT     D     108     D     108      8   12   23     3    7    8    9   10   19   30   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     Y     109     Y     109      8   12   22     4    7   11   15   20   26   30   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     V     110     V     110      8   12   22     4    7    8   14   20   24   30   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     Y     111     Y     111      8   12   22     4   13   20   21   25   27   32   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     L     112     L     112      8   12   22     4    7    8    9   23   25   30   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     A     113     A     113      8   12   22     4    7    8   11   23   25   30   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     V     114     V     114      8   12   22     4    7    8    9   10   12   30   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     Y     115     Y     115      8   12   22     4    6    8    9   10   23   30   34   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     P     116     P     116      5   11   22     3    4    6    9   10   12   12   14   38   41   45   46   48   51   55   61   64   69   72   73 
LCS_GDT     T     117     T     117      5   11   22     3    4    6    7   23   28   32   35   39   41   45   46   48   51   55   61   64   69   72   73 
LCS_AVERAGE  LCS_A:  19.76  (   9.38   15.19   34.70 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     18     20     23     26     29     33     35     39     41     45     46     48     51     55     61     64     69     72     73 
GDT PERCENT_CA  14.85  17.82  19.80  22.77  25.74  28.71  32.67  34.65  38.61  40.59  44.55  45.54  47.52  50.50  54.46  60.40  63.37  68.32  71.29  72.28
GDT RMS_LOCAL    0.26   0.56   0.79   1.17   1.58   1.83   2.17   2.34   2.74   2.88   3.25   3.32   3.51   3.90   4.43   5.25   5.47   6.14   6.41   6.36
GDT RMS_ALL_CA  10.81  11.16  11.41  10.83  11.11  11.08  10.92  10.84  11.04  11.14  10.94  10.92  10.86  10.67  10.57  10.06   9.96   9.73   9.63  10.12

#      Molecule1      Molecule2       DISTANCE
LGA    R      17      R      17         12.866
LGA    P      18      P      18         14.484
LGA    W      19      W      19         12.036
LGA    W      20      W      20         13.044
LGA    G      21      G      21         11.354
LGA    L      22      L      22         11.834
LGA    P      23      P      23         11.701
LGA    C      24      C      24         12.702
LGA    T      25      T      25         12.761
LGA    V      26      V      26         11.965
LGA    T      27      T      27         10.883
LGA    P      28      P      28         11.417
LGA    C      29      C      29          9.681
LGA    F      30      F      30          2.932
LGA    G      31      G      31          6.296
LGA    A      32      A      32          7.222
LGA    R      33      R      33          5.986
LGA    L      34      L      34         10.627
LGA    V      35      V      35         14.633
LGA    Q      36      Q      36         15.156
LGA    E      37      E      37         16.953
LGA    G      38      G      38         23.852
LGA    N      39      N      39         25.459
LGA    R      40      R      40         26.858
LGA    L      41      L      41         23.724
LGA    H      42      H      42         25.569
LGA    Y      43      Y      43         25.466
LGA    L      44      L      44         23.437
LGA    A      45      A      45         16.766
LGA    D      46      D      46         16.663
LGA    R      47      R      47         20.991
LGA    A      48      A      48         17.688
LGA    G      49      G      49         11.692
LGA    I      50      I      50          6.258
LGA    R      51      R      51          9.563
LGA    G      52      G      52          9.479
LGA    L      53      L      53          3.864
LGA    F      54      F      54          3.149
LGA    S      55      S      55          3.407
LGA    D      56      D      56          2.476
LGA    A      57      A      57          1.886
LGA    D      58      D      58          1.950
LGA    A      59      A      59          1.289
LGA    Y      60      Y      60          1.036
LGA    H      61      H      61          1.385
LGA    L      62      L      62          1.391
LGA    D      63      D      63          1.439
LGA    Q      64      Q      64          2.590
LGA    A      65      A      65          3.011
LGA    F      66      F      66          2.594
LGA    P      67      P      67          2.447
LGA    L      68      L      68          2.061
LGA    L      69      L      69          1.773
LGA    M      70      M      70          1.554
LGA    K      71      K      71          1.299
LGA    Q      72      Q      72          0.829
LGA    L      73      L      73          0.766
LGA    E      74      E      74          1.098
LGA    L      75      L      75          1.192
LGA    M      76      M      76          1.145
LGA    L      77      L      77          1.074
LGA    T      78      T      78          2.155
LGA    S      79      S      79          2.652
LGA    G      80      G      80          2.377
LGA    E      81      E      81          2.661
LGA    L      82      L      82          2.886
LGA    N      83      N      83          3.991
LGA    P      84      P      84          6.465
LGA    R      85      R      85          2.613
LGA    H      86      H      86          3.431
LGA    Q      87      Q      87          9.847
LGA    H      88      H      88         11.080
LGA    T      89      T      89          8.909
LGA    V      90      V      90          9.119
LGA    T      91      T      91          8.268
LGA    L      92      L      92          8.816
LGA    Y      93      Y      93          7.886
LGA    A      94      A      94          8.815
LGA    K      95      K      95         13.446
LGA    G      96      G      96         12.223
LGA    L      97      L      97         12.441
LGA    T      98      T      98         11.452
LGA    C      99      C      99         12.678
LGA    K     100      K     100         12.207
LGA    A     101      A     101         13.053
LGA    D     102      D     102         12.572
LGA    T     103      T     103         10.833
LGA    L     104      L     104          3.550
LGA    S     105      S     105          4.527
LGA    S     106      S     106          8.568
LGA    C     107      C     107          8.920
LGA    D     108      D     108          8.032
LGA    Y     109      Y     109          6.789
LGA    V     110      V     110          7.080
LGA    Y     111      Y     111          5.769
LGA    L     112      L     112          7.234
LGA    A     113      A     113          6.907
LGA    V     114      V     114          7.483
LGA    Y     115      Y     115          6.529
LGA    P     116      P     116          6.559
LGA    T     117      T     117          4.630

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  101  101    4.0     35    2.34    33.911    29.211     1.434

LGA_LOCAL      RMSD =  2.341  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.811  Number of atoms =  101 
Std_ALL_ATOMS  RMSD =  9.450  (standard rmsd on all 101 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.847166 * X  +  -0.190299 * Y  +   0.496080 * Z  +  41.958691
  Y_new =   0.101288 * X  +  -0.858698 * Y  +  -0.502373 * Z  +  25.421963
  Z_new =   0.521584 * X  +   0.475841 * Y  +  -0.708185 * Z  +  40.268604 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.549965   -0.591628  [ DEG:   146.1022    -33.8978 ]
  Theta =  -0.548707   -2.592886  [ DEG:   -31.4386   -148.5614 ]
  Phi   =   0.118996   -3.022596  [ DEG:     6.8180   -173.1820 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS599_5-D1                               
REMARK     2: T0304_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS599_5-D1.T0304_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  101  101   4.0   35   2.34  29.211     9.45
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS599_5-D1
PFRMAT TS                                                                       
TARGET T0304                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM     17  CA  ARG    17      22.244  19.316  38.311  1.00  0.00              
ATOM     18  CA  PRO    18      21.883  23.024  37.636  1.00  0.00              
ATOM     19  CA  TRP    19      24.585  24.563  39.891  1.00  0.00              
ATOM     20  CA  TRP    20      27.431  22.131  39.676  1.00  0.00              
ATOM     21  CA  GLY    21      30.448  24.028  38.466  1.00  0.00              
ATOM     22  CA  LEU    22      33.128  21.597  37.421  1.00  0.00              
ATOM     23  CA  PRO    23      34.788  22.024  34.087  1.00  0.00              
ATOM     24  CA  CYS    24      33.996  19.126  31.747  1.00  0.00              
ATOM     25  CA  THR    25      37.524  17.973  30.891  1.00  0.00              
ATOM     26  CA  VAL    26      38.987  16.348  34.022  1.00  0.00              
ATOM     27  CA  THR    27      42.702  16.535  34.654  1.00  0.00              
ATOM     28  CA  PRO    28      44.068  14.572  37.545  1.00  0.00              
ATOM     29  CA  CYS    29      45.879  17.292  39.491  1.00  0.00              
ATOM     30  CA  PHE    30      42.743  19.464  39.508  1.00  0.00              
ATOM     31  CA  GLY    31      40.185  16.729  40.176  1.00  0.00              
ATOM     32  CA  ALA    32      41.932  15.134  43.196  1.00  0.00              
ATOM     33  CA  ARG    33      42.317  18.515  44.797  1.00  0.00              
ATOM     34  CA  LEU    34      38.607  19.299  44.337  1.00  0.00              
ATOM     35  CA  VAL    35      37.496  15.971  45.843  1.00  0.00              
ATOM     36  CA  GLN    36      39.863  16.411  48.791  1.00  0.00              
ATOM     37  CA  GLU    37      38.605  19.959  49.571  1.00  0.00              
ATOM     38  CA  GLY    38      34.952  18.902  49.518  1.00  0.00              
ATOM     39  CA  ASN    39      33.963  20.505  46.288  1.00  0.00              
ATOM     40  CA  ARG    40      31.465  18.368  44.433  1.00  0.00              
ATOM     41  CA  LEU    41      32.052  18.768  40.753  1.00  0.00              
ATOM     42  CA  HIS    42      28.977  17.895  38.898  1.00  0.00              
ATOM     43  CA  TYR    43      26.858  16.474  36.252  1.00  0.00              
ATOM     44  CA  LEU    44      29.088  16.747  33.148  1.00  0.00              
ATOM     45  CA  ALA    45      32.077  15.713  35.259  1.00  0.00              
ATOM     46  CA  ASP    46      30.310  12.449  36.201  1.00  0.00              
ATOM     47  CA  ARG    47      29.099  11.213  32.845  1.00  0.00              
ATOM     48  CA  ALA    48      32.403  11.507  31.052  1.00  0.00              
ATOM     49  CA  GLY    49      34.422  10.085  33.977  1.00  0.00              
ATOM     50  CA  ILE    50      36.407  13.077  35.168  1.00  0.00              
ATOM     51  CA  ARG    51      39.892  11.489  34.774  1.00  0.00              
ATOM     52  CA  GLY    52      38.955  10.315  31.335  1.00  0.00              
ATOM     53  CA  LEU    53      37.407  13.126  29.401  1.00  0.00              
ATOM     54  CA  PHE    54      40.453  15.015  28.239  1.00  0.00              
ATOM     55  CA  SER    55      42.573  13.760  25.442  1.00  0.00              
ATOM     56  CA  ASP    56      45.984  12.333  26.330  1.00  0.00              
ATOM     57  CA  ALA    57      47.825  15.301  24.809  1.00  0.00              
ATOM     58  CA  ASP    58      45.840  17.721  26.966  1.00  0.00              
ATOM     59  CA  ALA    59      46.650  15.678  30.057  1.00  0.00              
ATOM     60  CA  TYR    60      50.375  15.860  29.267  1.00  0.00              
ATOM     61  CA  HIS    61      50.146  19.624  28.791  1.00  0.00              
ATOM     62  CA  LEU    62      48.244  20.143  32.059  1.00  0.00              
ATOM     63  CA  ASP    63      50.623  17.917  34.019  1.00  0.00              
ATOM     64  CA  GLN    64      53.585  19.869  32.798  1.00  0.00              
ATOM     65  CA  ALA    65      52.036  23.161  33.713  1.00  0.00              
ATOM     66  CA  PHE    66      50.706  22.213  37.177  1.00  0.00              
ATOM     67  CA  PRO    67      53.986  21.042  38.559  1.00  0.00              
ATOM     68  CA  LEU    68      55.642  24.271  37.364  1.00  0.00              
ATOM     69  CA  LEU    69      52.871  26.384  38.887  1.00  0.00              
ATOM     70  CA  MET    70      53.062  24.595  42.267  1.00  0.00              
ATOM     71  CA  LYS    71      56.800  25.063  42.294  1.00  0.00              
ATOM     72  CA  GLN    72      56.373  28.778  41.587  1.00  0.00              
ATOM     73  CA  LEU    73      53.829  29.117  44.422  1.00  0.00              
ATOM     74  CA  GLU    74      56.169  27.302  46.820  1.00  0.00              
ATOM     75  CA  LEU    75      59.002  29.614  45.831  1.00  0.00              
ATOM     76  CA  MET    76      56.818  32.697  46.373  1.00  0.00              
ATOM     77  CA  LEU    77      55.690  31.668  49.784  1.00  0.00              
ATOM     78  CA  THR    78      59.226  30.885  51.019  1.00  0.00              
ATOM     79  CA  SER    79      60.689  34.058  49.658  1.00  0.00              
ATOM     80  CA  GLY    80      58.378  36.671  51.005  1.00  0.00              
ATOM     81  CA  GLU    81      56.951  37.636  47.606  1.00  0.00              
ATOM     82  CA  LEU    82      53.474  37.327  48.951  1.00  0.00              
ATOM     83  CA  ASN    83      53.200  39.525  51.985  1.00  0.00              
ATOM     84  CA  PRO    84      52.595  38.918  55.637  1.00  0.00              
ATOM     85  CA  ARG    85      48.818  39.119  55.497  1.00  0.00              
ATOM     86  CA  HIS    86      48.849  36.501  52.701  1.00  0.00              
ATOM     87  CA  GLN    87      51.132  33.906  54.378  1.00  0.00              
ATOM     88  CA  HIS    88      48.520  31.160  53.761  1.00  0.00              
ATOM     89  CA  THR    89      48.421  32.026  50.002  1.00  0.00              
ATOM     90  CA  VAL    90      46.688  29.821  47.669  1.00  0.00              
ATOM     91  CA  THR    91      47.777  29.534  44.075  1.00  0.00              
ATOM     92  CA  LEU    92      45.310  28.486  41.433  1.00  0.00              
ATOM     93  CA  TYR    93      46.635  27.409  38.102  1.00  0.00              
ATOM     94  CA  ALA    94      44.781  25.785  35.372  1.00  0.00              
ATOM     95  CA  LYS    95      41.605  27.812  35.403  1.00  0.00              
ATOM     96  CA  GLY    96      43.043  31.206  36.122  1.00  0.00              
ATOM     97  CA  LEU    97      41.441  32.009  39.421  1.00  0.00              
ATOM     98  CA  THR    98      42.039  35.487  40.862  1.00  0.00              
ATOM     99  CA  CYS    99      41.147  36.334  44.351  1.00  0.00              
ATOM    100  CA  LYS   100      40.085  39.693  45.358  1.00  0.00              
ATOM    101  CA  ALA   101      41.631  41.403  48.308  1.00  0.00              
ATOM    102  CA  ASP   102      38.544  41.909  50.452  1.00  0.00              
ATOM    103  CA  THR   103      37.186  38.317  50.276  1.00  0.00              
ATOM    104  CA  LEU   104      40.543  36.620  50.682  1.00  0.00              
ATOM    105  CA  SER   105      41.302  38.828  53.694  1.00  0.00              
ATOM    106  CA  SER   106      38.121  38.442  55.741  1.00  0.00              
ATOM    107  CA  CYS   107      38.450  34.664  55.964  1.00  0.00              
ATOM    108  CA  ASP   108      42.286  34.658  56.049  1.00  0.00              
ATOM    109  CA  TYR   109      43.164  33.281  52.670  1.00  0.00              
ATOM    110  CA  VAL   110      44.786  34.966  49.667  1.00  0.00              
ATOM    111  CA  TYR   111      44.071  33.513  46.290  1.00  0.00              
ATOM    112  CA  LEU   112      46.417  34.074  43.410  1.00  0.00              
ATOM    113  CA  ALA   113      45.392  33.153  40.025  1.00  0.00              
ATOM    114  CA  VAL   114      48.022  31.988  37.469  1.00  0.00              
ATOM    115  CA  TYR   115      46.747  30.457  34.260  1.00  0.00              
ATOM    116  CA  PRO   116      48.667  28.268  31.895  1.00  0.00              
ATOM    117  CA  THR   117      48.912  29.761  28.422  1.00  0.00              
TER                                                                             
END
