
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  133 (  133),  selected  132 , name T0307TS599_4
# Molecule2: number of CA atoms  132 ( 1005),  selected  132 , name T0307.pdb
# PARAMETERS: T0307TS599_4.T0307.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        95 - 131         4.99    36.67
  LCS_AVERAGE:     24.27

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         6 - 29          1.55    25.42
  LCS_AVERAGE:     11.64

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        10 - 29          0.85    25.49
  LCS_AVERAGE:      9.00

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     M       1     M       1      4    6    8     3    3   16   16   16   16   17   18   18   19   20   22   24   26   29   31   32   34   34   35 
LCS_GDT     G       2     G       2      5    6    8     3    3    5    6    6    6    6    7    7    7    7    7    7   22   25   28   28   32   34   35 
LCS_GDT     L       3     L       3      5    6   30     3    4    5    6    6    6    6    7    7    7    7    7    8   10   12   18   23   25   26   27 
LCS_GDT     G       4     G       4      5    6   30     3    4    5    6    6    6    6    7    7    7    9   18   26   26   26   27   28   28   28   29 
LCS_GDT     R       5     R       5      5    6   30     3    4    5    6    6    6    6    7   18   25   25   25   26   27   27   27   30   31   32   33 
LCS_GDT     Q       6     Q       6      6   24   30     4    5    6    9   10   24   24   24   24   25   25   26   26   27   28   28   30   31   33   36 
LCS_GDT     S       7     S       7      8   24   30     4    5   16   21   22   24   24   24   24   25   25   26   26   27   28   28   30   31   33   38 
LCS_GDT     L       8     L       8      8   24   30     4    6    9   21   22   24   24   24   24   25   25   26   26   27   28   28   30   31   33   42 
LCS_GDT     N       9     N       9      8   24   30     4    5   16   21   22   24   24   24   24   25   25   26   26   27   28   29   33   36   39   42 
LCS_GDT     I      10     I      10     20   24   30    10   16   19   21   22   24   24   24   24   25   25   26   26   27   28   33   33   36   39   42 
LCS_GDT     M      11     M      11     20   24   30    11   17   19   21   22   24   24   24   24   25   25   26   26   27   28   33   33   36   39   42 
LCS_GDT     T      12     T      12     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   27   28   29   30   33   35   40 
LCS_GDT     F      13     F      13     20   24   30     7   11   18   19   22   24   24   24   24   25   25   26   26   27   28   29   30   33   35   38 
LCS_GDT     S      14     S      14     20   24   30     7   17   19   21   22   24   24   24   24   25   25   26   26   27   28   28   30   31   33   34 
LCS_GDT     G      15     G      15     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   27   28   28   30   31   33   34 
LCS_GDT     Q      16     Q      16     20   24   30    10   17   19   21   22   24   24   24   24   25   25   26   26   27   28   28   30   31   33   34 
LCS_GDT     E      17     E      17     20   24   30    12   17   19   21   22   24   24   24   24   25   25   26   26   27   28   29   30   33   35   38 
LCS_GDT     L      18     L      18     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   27   28   28   30   33   35   40 
LCS_GDT     T      19     T      19     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   27   28   28   30   31   33   34 
LCS_GDT     A      20     A      20     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   27   28   29   31   35   37   40 
LCS_GDT     I      21     I      21     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   28   30   33   33   36   39   42 
LCS_GDT     I      22     I      22     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   27   29   31   34   37   43   46 
LCS_GDT     K      23     K      23     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   26   27   29   31   35   39   44   47 
LCS_GDT     M      24     M      24     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   27   29   30   37   39   42   45   47 
LCS_GDT     A      25     A      25     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   28   31   35   37   39   42   45   47 
LCS_GDT     K      26     K      26     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   29   31   35   37   39   42   45   47 
LCS_GDT     S      27     S      27     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   29   31   35   37   39   42   45   47 
LCS_GDT     M      28     M      28     20   24   30    13   17   19   21   22   24   24   24   24   25   25   26   29   31   35   37   39   42   45   47 
LCS_GDT     V      29     V      29     20   24   30    11   17   19   21   22   24   24   24   24   25   25   26   26   30   35   37   39   42   45   47 
LCS_GDT     M      30     M      30      5   22   30     4    5    5    7    9   11   15   21   23   25   25   26   26   30   33   36   37   38   45   45 
LCS_GDT     A      31     A      31      5    7   30     4    5    5    7    8    9   10   12   15   17   21   26   26   28   32   35   37   38   39   42 
LCS_GDT     D      32     D      32      5    7   31     4    5    5    7    8    9   10   12   15   17   19   23   28   31   33   36   37   38   39   41 
LCS_GDT     G      33     G      33      5    7   31     4    5    5    7    8    9   11   14   18   22   25   27   29   31   33   36   37   38   39   41 
LCS_GDT     K      34     K      34      6    7   31     4    6    6    7    8    9   11   14   18   22   25   27   29   31   33   36   37   38   39   41 
LCS_GDT     I      35     I      35      6    7   31     4    6    6    7    8    9   11   14   18   22   25   27   29   31   33   36   37   38   39   42 
LCS_GDT     K      36     K      36      6    7   31     4    6    6    6    6    8   11   13   15   21   25   27   29   31   33   36   37   42   45   47 
LCS_GDT     P      37     P      37      6    7   31     4    6    6    6    6    8   11   13   15   15   18   21   25   30   35   37   39   42   45   47 
LCS_GDT     A      38     A      38      6    7   31     4    6    6    6    6    8   11   13   15   19   23   26   29   31   33   37   39   42   44   47 
LCS_GDT     E      39     E      39      6    7   31     4    6    6    6    6    8   11   14   18   22   25   27   29   31   33   36   37   40   44   47 
LCS_GDT     I      40     I      40      3    7   31     3    3    3    4    6    8   11   15   18   22   25   27   29   31   33   36   37   41   44   47 
LCS_GDT     A      41     A      41      3    4   31     0    3    4    4    6   10   13   15   18   22   25   27   29   31   33   36   37   38   40   43 
LCS_GDT     V      42     V      42      3   10   31     3    3    4    5    9   13   15   16   18   22   25   27   29   31   33   36   37   38   39   42 
LCS_GDT     M      43     M      43      9   15   31     5    6   10   13   17   18   23   23   23   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     T      44     T      44      9   15   31     5    6   10   13   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     R      45     R      45      9   15   31     5    6   10   13   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     E      46     E      46      9   15   31     5    6   10   13   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     F      47     F      47      9   15   31     5    6   10   13   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     M      48     M      48      9   15   31     3    6   10   13   16   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     R      49     R      49      9   15   31     3    5   10   13   15   17   20   22   24   25   26   27   29   30   33   36   37   38   39   42 
LCS_GDT     F      50     F      50      9   15   31     3    5   10   13   15   17   20   22   23   25   26   27   29   31   33   36   37   38   39   41 
LCS_GDT     G      51     G      51      9   15   31     3    5   10   13   15   17   20   22   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     I      52     I      52      7   17   31     3    5    9   13   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     L      53     L      53     14   17   31     3   10   13   15   17   20   23   23   24   25   26   27   28   31   33   36   37   38   39   42 
LCS_GDT     Q      54     Q      54     14   17   31     4    8   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     D      55     D      55     14   17   31     4    8   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     Q      56     Q      56     14   17   31     4   12   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     V      57     V      57     14   17   31     8   12   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     D      58     D      58     14   17   31     8   12   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     L      59     L      59     14   17   31     8   12   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   40   45 
LCS_GDT     L      60     L      60     14   17   31     8   12   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   40   45 
LCS_GDT     L      61     L      61     14   17   31     8   12   13   15   17   20   23   23   24   25   26   27   29   31   33   36   37   38   42   47 
LCS_GDT     K      62     K      62     14   17   31     8   12   13   15   17   20   23   23   24   25   26   26   29   31   33   36   39   42   44   47 
LCS_GDT     A      63     A      63     14   17   31     8   12   13   15   17   20   23   23   24   25   26   26   29   31   35   37   39   42   45   47 
LCS_GDT     S      64     S      64     14   17   31     8   12   13   15   17   20   23   23   24   25   26   26   28   31   35   37   39   42   45   47 
LCS_GDT     D      65     D      65     14   17   31     7   12   13   15   17   20   23   23   24   25   26   26   29   31   35   37   39   42   45   47 
LCS_GDT     S      66     S      66     14   17   31     7   12   12   15   17   20   23   23   24   25   26   26   29   31   35   37   39   42   45   47 
LCS_GDT     I      67     I      67     13   17   31     4   12   12   15   17   20   23   23   24   25   26   26   29   31   35   37   39   42   45   47 
LCS_GDT     E      68     E      68     13   17   31     6   11   12   13   17   20   23   23   24   25   26   26   29   31   35   37   39   42   45   47 
LCS_GDT     A      69     A      69     12   15   31     7   11   12   12   13   15   16   21   23   24   25   26   29   31   35   37   39   42   45   47 
LCS_GDT     S      70     S      70     12   14   31     6   11   12   12   13   15   16   17   19   21   25   26   29   31   35   37   39   42   45   47 
LCS_GDT     Q      71     Q      71     12   14   31     6   11   12   12   13   15   17   20   23   24   25   26   29   31   35   37   39   42   45   47 
LCS_GDT     A      72     A      72     12   14   31     7   11   12   12   13   15   16   17   19   21   22   25   29   31   35   37   39   42   45   47 
LCS_GDT     V      73     V      73     12   14   31     7   11   12   12   13   15   16   17   19   21   22   25   29   31   35   37   39   42   45   47 
LCS_GDT     A      74     A      74     12   14   24     7   11   12   12   13   15   16   17   19   21   22   25   29   31   35   37   39   42   45   47 
LCS_GDT     L      75     L      75     12   14   24     7   11   12   12   13   15   16   17   19   21   22   25   29   31   35   37   39   42   45   47 
LCS_GDT     I      76     I      76     12   14   31     7   11   12   12   13   15   16   17   19   21   22   25   29   31   35   37   39   42   45   47 
LCS_GDT     A      77     A      77     12   14   31     7   11   12   12   13   15   16   17   19   21   22   25   31   33   35   37   39   42   45   47 
LCS_GDT     R      78     R      78     12   14   31     7   11   12   12   13   15   16   17   19   21   25   29   33   34   35   37   39   42   45   47 
LCS_GDT     M      79     M      79     12   16   31     6   11   12   12   13   15   16   17   20   25   30   32   33   34   35   37   39   42   45   47 
LCS_GDT     D      80     D      80     15   16   31    11   14   15   15   15   15   16   17   20   25   30   32   33   34   35   37   37   41   45   47 
LCS_GDT     E      81     E      81     15   16   31    13   14   15   15   15   15   16   17   20   25   30   32   33   34   35   37   39   42   45   47 
LCS_GDT     E      82     E      82     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   47 
LCS_GDT     R      83     R      83     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   47 
LCS_GDT     K      84     K      84     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   47 
LCS_GDT     K      85     K      85     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   47 
LCS_GDT     Y      86     Y      86     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   38   41   45   46 
LCS_GDT     V      87     V      87     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   41   43   46 
LCS_GDT     A      88     A      88     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   40   43   46 
LCS_GDT     S      89     S      89     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   41   43   46 
LCS_GDT     Y      90     Y      90     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   41   43   46 
LCS_GDT     L      91     L      91     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   39   40   45 
LCS_GDT     G      92     G      92     15   16   31    13   14   15   15   15   15   16   16   20   25   30   32   33   34   35   37   37   39   41   46 
LCS_GDT     V      93     V      93     15   16   31    13   14   15   15   15   15   16   16   19   23   26   29   33   34   35   37   37   40   43   46 
LCS_GDT     I      94     I      94     15   16   31     8   14   15   15   15   15   16   16   20   25   30   32   33   34   35   37   37   39   41   46 
LCS_GDT     M      95     M      95      3   16   37     3    3    5    7    9   14   17   20   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     A      96     A      96      4   10   37     3    4    5    8   11   13   16   19   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     S      97     S      97      4   10   37     3    4    4    7    9   12   14   18   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D      98     D      98      4   10   37     3    5    5    7   10   13   16   18   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     G      99     G      99      4   10   37     3    5    5    8   10   11   16   18   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D     100     D     100      6   10   37     6    6    6    7   10   11   14   16   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     I     101     I     101      6   10   37     6    6    6    8   11   13   16   18   21   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D     102     D     102      6   10   37     6    6    6    8   11   13   16   19   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D     103     D     103      6   10   37     6    6    6    8   10   11   14   17   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     N     104     N     104      6   10   37     6    6    6    8   10   11   12   16   20   25   30   32   33   34   35   37   38   38   41   46 
LCS_GDT     E     105     E     105      6    8   37     6    6    6    8   11   13   17   20   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     L     106     L     106      3   16   37     0    4    5    6    9   13   16   20   22   25   27   30   31   34   35   37   38   41   43   46 
LCS_GDT     A     107     A     107     15   16   37    14   15   16   16   16   17   17   18   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     108     L     108     15   16   37    14   15   16   16   16   17   17   18   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     W     109     W     109     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     T     110     T     110     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     111     L     111     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     I     112     I     112     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     S     113     S     113     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     T     114     T     114     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     115     L     115     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     C     116     C     116     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     G     117     G     117     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     118     L     118     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     P     119     P     119     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   36   39   42   45   47 
LCS_GDT     T     120     T     120     15   16   37    14   15   16   16   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   47 
LCS_GDT     M     121     M     121     15   16   37     4   15   16   16   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   47 
LCS_GDT     T     122     T     122     10   16   37    10   10   10   10   10   10   11   15   18   20   23   27   31   31   35   37   39   42   45   47 
LCS_GDT     V     123     V     123     10   11   37    10   10   10   10   10   10   11   12   15   20   23   27   31   31   35   37   39   42   45   47 
LCS_GDT     M     124     M     124     10   11   37    10   10   10   10   10   10   11   13   17   22   25   29   31   33   34   36   38   42   45   47 
LCS_GDT     E     125     E     125     10   11   37    10   10   10   12   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   47 
LCS_GDT     A     126     A     126     10   11   37    10   10   10   14   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   47 
LCS_GDT     I     127     I     127     10   11   37    10   10   10   10   10   13   16   20   22   25   30   32   33   34   35   37   38   41   45   46 
LCS_GDT     N     128     N     128     10   11   37    10   10   10   10   10   13   16   20   22   25   30   32   33   34   35   37   38   42   45   47 
LCS_GDT     N     129     N     129     10   11   37    10   10   10   10   11   14   17   20   22   25   30   32   33   34   35   37   39   42   45   47 
LCS_GDT     M     130     M     130     10   11   37    10   10   10   10   11   14   17   20   22   25   29   32   33   34   35   37   38   41   43   46 
LCS_GDT     K     131     K     131     10   11   37    10   10   10   10   10   10   15   18   21   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     N     132     N     132      0   11   34     0    0    1    3    4    8   13   18   19   20   29   32   33   34   35   37   38   40   45   46 
LCS_AVERAGE  LCS_A:  14.97  (   9.00   11.64   24.27 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     17     19     21     22     24     24     24     24     25     30     32     33     34     35     37     39     42     45     47 
GDT PERCENT_CA  10.61  12.88  14.39  15.91  16.67  18.18  18.18  18.18  18.18  18.94  22.73  24.24  25.00  25.76  26.52  28.03  29.55  31.82  34.09  35.61
GDT RMS_LOCAL    0.28   0.45   0.70   1.04   1.15   1.55   1.55   1.55   1.55   2.72   3.93   4.14   4.25   4.41   4.62   5.00   6.00   6.26   6.42   6.84
GDT RMS_ALL_CA  32.52  25.33  25.45  25.21  25.28  25.42  25.42  25.42  25.42  33.79  29.33  29.44  29.53  29.29  29.08  28.59  23.95  24.13  24.93  23.89

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         27.227
LGA    G       2      G       2         22.843
LGA    L       3      L       3         15.172
LGA    G       4      G       4         11.438
LGA    R       5      R       5          8.051
LGA    Q       6      Q       6          3.686
LGA    S       7      S       7          2.137
LGA    L       8      L       8          2.266
LGA    N       9      N       9          2.432
LGA    I      10      I      10          0.408
LGA    M      11      M      11          1.862
LGA    T      12      T      12          1.752
LGA    F      13      F      13          2.803
LGA    S      14      S      14          1.392
LGA    G      15      G      15          0.753
LGA    Q      16      Q      16          1.398
LGA    E      17      E      17          0.995
LGA    L      18      L      18          0.261
LGA    T      19      T      19          0.978
LGA    A      20      A      20          0.914
LGA    I      21      I      21          0.195
LGA    I      22      I      22          0.893
LGA    K      23      K      23          0.979
LGA    M      24      M      24          0.732
LGA    A      25      A      25          0.456
LGA    K      26      K      26          0.491
LGA    S      27      S      27          0.996
LGA    M      28      M      28          1.140
LGA    V      29      V      29          1.166
LGA    M      30      M      30          8.406
LGA    A      31      A      31         11.865
LGA    D      32      D      32         14.625
LGA    G      33      G      33         16.950
LGA    K      34      K      34         16.085
LGA    I      35      I      35         13.482
LGA    K      36      K      36         12.837
LGA    P      37      P      37         12.447
LGA    A      38      A      38         15.475
LGA    E      39      E      39         13.426
LGA    I      40      I      40         15.430
LGA    A      41      A      41         18.169
LGA    V      42      V      42         19.201
LGA    M      43      M      43         20.374
LGA    T      44      T      44         22.845
LGA    R      45      R      45         25.985
LGA    E      46      E      46         22.539
LGA    F      47      F      47         20.255
LGA    M      48      M      48         23.136
LGA    R      49      R      49         22.270
LGA    F      50      F      50         19.298
LGA    G      51      G      51         20.569
LGA    I      52      I      52         22.209
LGA    L      53      L      53         27.514
LGA    Q      54      Q      54         30.394
LGA    D      55      D      55         33.788
LGA    Q      56      Q      56         29.147
LGA    V      57      V      57         25.255
LGA    D      58      D      58         28.447
LGA    L      59      L      59         29.638
LGA    L      60      L      60         23.904
LGA    L      61      L      61         21.881
LGA    K      62      K      62         26.085
LGA    A      63      A      63         25.634
LGA    S      64      S      64         20.427
LGA    D      65      D      65         21.219
LGA    S      66      S      66         25.288
LGA    I      67      I      67         24.158
LGA    E      68      E      68         20.478
LGA    A      69      A      69         14.973
LGA    S      70      S      70         18.917
LGA    Q      71      Q      71         22.125
LGA    A      72      A      72         16.605
LGA    V      73      V      73         15.730
LGA    A      74      A      74         22.848
LGA    L      75      L      75         23.854
LGA    I      76      I      76         20.737
LGA    A      77      A      77         23.721
LGA    R      78      R      78         29.829
LGA    M      79      M      79         29.764
LGA    D      80      D      80         32.596
LGA    E      81      E      81         32.298
LGA    E      82      E      82         33.395
LGA    R      83      R      83         32.984
LGA    K      84      K      84         32.468
LGA    K      85      K      85         32.991
LGA    Y      86      Y      86         33.384
LGA    V      87      V      87         32.817
LGA    A      88      A      88         32.869
LGA    S      89      S      89         33.665
LGA    Y      90      Y      90         33.309
LGA    L      91      L      91         32.646
LGA    G      92      G      92         33.286
LGA    V      93      V      93         33.702
LGA    I      94      I      94         32.566
LGA    M      95      M      95         29.975
LGA    A      96      A      96         32.860
LGA    S      97      S      97         31.034
LGA    D      98      D      98         35.694
LGA    G      99      G      99         37.982
LGA    D     100      D     100         38.767
LGA    I     101      I     101         35.732
LGA    D     102      D     102         33.686
LGA    D     103      D     103         32.149
LGA    N     104      N     104         29.447
LGA    E     105      E     105         31.593
LGA    L     106      L     106         34.724
LGA    A     107      A     107         32.664
LGA    L     108      L     108         33.117
LGA    W     109      W     109         32.095
LGA    T     110      T     110         33.449
LGA    L     111      L     111         35.747
LGA    I     112      I     112         35.393
LGA    S     113      S     113         34.562
LGA    T     114      T     114         36.667
LGA    L     115      L     115         38.175
LGA    C     116      C     116         37.187
LGA    G     117      G     117         36.944
LGA    L     118      L     118         34.818
LGA    P     119      P     119         33.591
LGA    T     120      T     120         32.318
LGA    M     121      M     121         28.641
LGA    T     122      T     122         28.213
LGA    V     123      V     123         28.495
LGA    M     124      M     124         29.463
LGA    E     125      E     125         30.142
LGA    A     126      A     126         30.637
LGA    I     127      I     127         31.497
LGA    N     128      N     128         32.855
LGA    N     129      N     129         34.139
LGA    M     130      M     130         35.163
LGA    K     131      K     131         36.405
LGA    N     132      N     132         39.811

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  133  132    4.0     24    1.55    18.750    17.116     1.456

LGA_LOCAL      RMSD =  1.548  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 25.419  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 19.046  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.214823 * X  +   0.729905 * Y  +  -0.648914 * Z  +  20.612663
  Y_new =  -0.659263 * X  +   0.598586 * Y  +   0.455046 * Z  +  10.584964
  Z_new =   0.720571 * X  +   0.330051 * Y  +   0.609790 * Z  +  18.951704 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.496103   -2.645489  [ DEG:    28.4246   -151.5754 ]
  Theta =  -0.804626   -2.336967  [ DEG:   -46.1017   -133.8983 ]
  Phi   =  -1.255792    1.885800  [ DEG:   -71.9516    108.0484 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_4                                  
REMARK     2: T0307.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_4.T0307.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  133  132   4.0   24   1.55  17.116    19.05
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_4
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       7.598  20.776  38.149  1.00  0.00              
ATOM      2  CA  GLY     2       5.733  21.933  40.993  1.00  0.00              
ATOM      3  CA  LEU     3       1.912  20.600  41.454  1.00  0.00              
ATOM      4  CA  GLY     4      -0.153  20.719  44.704  1.00  0.00              
ATOM      5  CA  ARG     5       0.185  17.981  47.321  1.00  0.00              
ATOM      6  CA  GLN     6      -2.956  16.058  46.218  1.00  0.00              
ATOM      7  CA  SER     7      -1.733  16.179  42.579  1.00  0.00              
ATOM      8  CA  LEU     8       2.010  15.860  42.770  1.00  0.00              
ATOM      9  CA  ASN     9       4.205  16.464  39.809  1.00  0.00              
ATOM     10  CA  ILE    10       7.695  17.349  40.883  1.00  0.00              
ATOM     11  CA  MET    11      10.865  16.485  38.895  1.00  0.00              
ATOM     12  CA  THR    12      14.159  17.310  40.505  1.00  0.00              
ATOM     13  CA  PHE    13      17.410  17.470  38.635  1.00  0.00              
ATOM     14  CA  SER    14      20.069  16.811  41.207  1.00  0.00              
ATOM     15  CA  GLY    15      23.654  16.622  40.085  1.00  0.00              
ATOM     16  CA  GLN    16      23.940  12.820  40.228  1.00  0.00              
ATOM     17  CA  GLU    17      20.786  12.068  38.235  1.00  0.00              
ATOM     18  CA  LEU    18      21.775  14.490  35.480  1.00  0.00              
ATOM     19  CA  THR    19      25.298  12.992  35.181  1.00  0.00              
ATOM     20  CA  ALA    20      23.904   9.448  34.980  1.00  0.00              
ATOM     21  CA  ILE    21      21.444  10.507  32.248  1.00  0.00              
ATOM     22  CA  ILE    22      24.305  12.167  30.292  1.00  0.00              
ATOM     23  CA  LYS    23      26.468   9.085  30.551  1.00  0.00              
ATOM     24  CA  MET    24      23.526   6.983  29.268  1.00  0.00              
ATOM     25  CA  ALA    25      22.883   9.358  26.346  1.00  0.00              
ATOM     26  CA  LYS    26      26.466   9.347  25.191  1.00  0.00              
ATOM     27  CA  SER    27      26.808   5.508  25.247  1.00  0.00              
ATOM     28  CA  MET    28      23.542   5.288  23.205  1.00  0.00              
ATOM     29  CA  VAL    29      24.253   7.944  20.536  1.00  0.00              
ATOM     30  CA  MET    30      21.411  10.168  19.360  1.00  0.00              
ATOM     31  CA  ALA    31      21.365  11.175  15.626  1.00  0.00              
ATOM     32  CA  ASP    32      17.674  12.091  15.108  1.00  0.00              
ATOM     33  CA  GLY    33      17.772  14.438  18.109  1.00  0.00              
ATOM     34  CA  LYS    34      16.139  12.199  20.670  1.00  0.00              
ATOM     35  CA  ILE    35      18.691  12.566  23.453  1.00  0.00              
ATOM     36  CA  LYS    36      19.978  15.961  24.479  1.00  0.00              
ATOM     37  CA  PRO    37      23.094  16.285  26.626  1.00  0.00              
ATOM     38  CA  ALA    38      21.256  18.034  29.465  1.00  0.00              
ATOM     39  CA  GLU    39      18.421  15.578  29.893  1.00  0.00              
ATOM     40  CA  ILE    40      18.142  15.370  33.704  1.00  0.00              
ATOM     41  CA  ALA    41      14.875  14.700  35.635  1.00  0.00              
ATOM     42  CA  VAL    42      14.847  12.299  38.566  1.00  0.00              
ATOM     43  CA  MET    43      12.846  12.873  41.789  1.00  0.00              
ATOM     44  CA  THR    44      11.074   9.756  42.967  1.00  0.00              
ATOM     45  CA  ARG    45      11.707  10.038  46.699  1.00  0.00              
ATOM     46  CA  GLU    46      10.556  13.635  46.760  1.00  0.00              
ATOM     47  CA  PHE    47       7.323  12.873  44.890  1.00  0.00              
ATOM     48  CA  MET    48       6.526   9.968  47.282  1.00  0.00              
ATOM     49  CA  ARG    49       7.305  12.253  50.229  1.00  0.00              
ATOM     50  CA  PHE    50       4.693  14.835  49.028  1.00  0.00              
ATOM     51  CA  GLY    51       2.102  12.140  48.630  1.00  0.00              
ATOM     52  CA  ILE    52       1.088  12.459  45.035  1.00  0.00              
ATOM     53  CA  LEU    53       0.381   8.747  44.437  1.00  0.00              
ATOM     54  CA  GLN    54       3.446   6.968  45.872  1.00  0.00              
ATOM     55  CA  ASP    55       2.978   3.872  43.671  1.00  0.00              
ATOM     56  CA  GLN    56       2.316   6.275  40.781  1.00  0.00              
ATOM     57  CA  VAL    57       5.617   8.207  41.097  1.00  0.00              
ATOM     58  CA  ASP    58       8.296   5.488  41.387  1.00  0.00              
ATOM     59  CA  LEU    59       6.402   3.597  38.610  1.00  0.00              
ATOM     60  CA  LEU    60       6.432   6.572  36.174  1.00  0.00              
ATOM     61  CA  LEU    61      10.173   6.978  36.819  1.00  0.00              
ATOM     62  CA  LYS    62      10.969   3.286  36.210  1.00  0.00              
ATOM     63  CA  ALA    63       8.933   3.454  32.984  1.00  0.00              
ATOM     64  CA  SER    64      10.710   6.604  31.751  1.00  0.00              
ATOM     65  CA  ASP    65      14.076   4.837  31.887  1.00  0.00              
ATOM     66  CA  SER    66      12.668   1.855  29.942  1.00  0.00              
ATOM     67  CA  ILE    67      11.025   3.617  27.004  1.00  0.00              
ATOM     68  CA  GLU    68      14.060   5.861  26.535  1.00  0.00              
ATOM     69  CA  ALA    69      16.585   3.018  26.348  1.00  0.00              
ATOM     70  CA  SER    70      14.738   1.000  23.787  1.00  0.00              
ATOM     71  CA  GLN    71      14.153   3.960  21.457  1.00  0.00              
ATOM     72  CA  ALA    72      17.754   5.119  21.505  1.00  0.00              
ATOM     73  CA  VAL    73      19.606   1.931  20.567  1.00  0.00              
ATOM     74  CA  ALA    74      17.135   1.420  17.733  1.00  0.00              
ATOM     75  CA  LEU    75      17.543   4.958  16.426  1.00  0.00              
ATOM     76  CA  ILE    76      21.333   4.747  16.374  1.00  0.00              
ATOM     77  CA  ALA    77      21.265   1.490  14.526  1.00  0.00              
ATOM     78  CA  ARG    78      18.900   2.906  11.837  1.00  0.00              
ATOM     79  CA  MET    79      20.949   6.083  11.212  1.00  0.00              
ATOM     80  CA  ASP    80      24.173   4.031  10.821  1.00  0.00              
ATOM     81  CA  GLU    81      22.561   1.565   8.364  1.00  0.00              
ATOM     82  CA  GLU    82      21.217   4.455   6.237  1.00  0.00              
ATOM     83  CA  ARG    83      24.670   6.094   6.211  1.00  0.00              
ATOM     84  CA  LYS    84      26.229   2.754   5.151  1.00  0.00              
ATOM     85  CA  LYS    85      23.754   2.265   2.321  1.00  0.00              
ATOM     86  CA  TYR    86      24.392   5.818   1.042  1.00  0.00              
ATOM     87  CA  VAL    87      28.151   5.302   1.200  1.00  0.00              
ATOM     88  CA  ALA    88      28.067   1.981  -0.769  1.00  0.00              
ATOM     89  CA  SER    89      25.930   3.572  -3.454  1.00  0.00              
ATOM     90  CA  TYR    90      28.238   6.565  -3.734  1.00  0.00              
ATOM     91  CA  LEU    91      31.467   4.486  -3.903  1.00  0.00              
ATOM     92  CA  GLY    92      29.811   2.247  -6.465  1.00  0.00              
ATOM     93  CA  VAL    93      29.080   5.376  -8.571  1.00  0.00              
ATOM     94  CA  ILE    94      32.145   7.637  -8.287  1.00  0.00              
ATOM     95  CA  MET    95      31.378  11.288  -8.714  1.00  0.00              
ATOM     96  CA  ALA    96      34.064  13.867  -9.191  1.00  0.00              
ATOM     97  CA  SER    97      33.148  17.505  -9.954  1.00  0.00              
ATOM     98  CA  ASP    98      33.938  17.837 -13.686  1.00  0.00              
ATOM     99  CA  GLY    99      32.022  14.719 -14.638  1.00  0.00              
ATOM    100  CA  ASP   100      34.924  12.607 -15.910  1.00  0.00              
ATOM    101  CA  ILE   101      34.557   9.725 -13.587  1.00  0.00              
ATOM    102  CA  ASP   102      34.386   6.172 -14.757  1.00  0.00              
ATOM    103  CA  ASP   103      31.453   4.176 -13.440  1.00  0.00              
ATOM    104  CA  ASN   104      33.482   2.190 -10.840  1.00  0.00              
ATOM    105  CA  GLU   105      35.631   5.056  -9.723  1.00  0.00              
ATOM    106  CA  LEU   106      36.308   8.395  -8.334  1.00  0.00              
ATOM    107  CA  ALA   107      34.268  10.231  -5.779  1.00  0.00              
ATOM    108  CA  LEU   108      35.152  13.897  -5.125  1.00  0.00              
ATOM    109  CA  TRP   109      33.494  14.603  -1.770  1.00  0.00              
ATOM    110  CA  THR   110      34.759  11.143  -0.796  1.00  0.00              
ATOM    111  CA  LEU   111      38.359  12.167  -1.491  1.00  0.00              
ATOM    112  CA  ILE   112      38.030  15.438   0.431  1.00  0.00              
ATOM    113  CA  SER   113      36.192  13.692   3.257  1.00  0.00              
ATOM    114  CA  THR   114      38.993  11.224   3.622  1.00  0.00              
ATOM    115  CA  LEU   115      41.686  13.842   3.749  1.00  0.00              
ATOM    116  CA  CYS   116      39.702  16.099   6.136  1.00  0.00              
ATOM    117  CA  GLY   117      38.334  13.422   8.367  1.00  0.00              
ATOM    118  CA  LEU   118      34.691  14.082   7.333  1.00  0.00              
ATOM    119  CA  PRO   119      32.649  11.057   8.142  1.00  0.00              
ATOM    120  CA  THR   120      31.251   9.232   5.197  1.00  0.00              
ATOM    121  CA  MET   121      27.481   9.484   6.060  1.00  0.00              
ATOM    122  CA  THR   122      27.933  13.285   6.255  1.00  0.00              
ATOM    123  CA  VAL   123      29.965  13.691   3.035  1.00  0.00              
ATOM    124  CA  MET   124      27.533  11.608   1.036  1.00  0.00              
ATOM    125  CA  GLU   125      24.652  13.797   2.305  1.00  0.00              
ATOM    126  CA  ALA   126      26.507  16.943   1.348  1.00  0.00              
ATOM    127  CA  ILE   127      27.248  15.726  -2.171  1.00  0.00              
ATOM    128  CA  ASN   128      23.590  14.755  -2.636  1.00  0.00              
ATOM    129  CA  ASN   129      22.435  18.159  -1.554  1.00  0.00              
ATOM    130  CA  MET   130      24.810  20.024  -3.942  1.00  0.00              
ATOM    131  CA  LYS   131      23.345  17.499  -6.990  1.00  0.00              
ATOM    132  CA  ASN   132      24.401  20.638  -5.622  1.00  0.00              
ATOM    133  CA  LEU   133      25.469  23.202  -3.343  1.00  0.00              
TER                                                                             
END
