
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0318TS393_1-D1
# Molecule2: number of CA atoms  154 ( 1200),  selected  154 , name T0318_D1.pdb
# PARAMETERS: T0318TS393_1-D1.T0318_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38       117 - 154         4.96    28.53
  LONGEST_CONTINUOUS_SEGMENT:    38       118 - 155         4.97    28.59
  LCS_AVERAGE:     18.75

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       116 - 132         2.00    30.29
  LONGEST_CONTINUOUS_SEGMENT:    17       117 - 133         1.82    30.59
  LCS_AVERAGE:      6.27

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       117 - 131         0.94    30.40
  LCS_AVERAGE:      4.09

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     T       2     T       2      4    9   12     1    4    4    7    8    9   10   11   13   13   16   21   23   27   30   33   38   43   48   54 
LCS_GDT     Q       3     Q       3      4    9   12     0    4    4    6    8    9   10   11   13   15   17   21   23   27   30   33   36   42   47   54 
LCS_GDT     V       4     V       4      4    9   12     3    4    4    7    8    9   10   11   13   15   17   21   23   27   30   33   44   52   57   59 
LCS_GDT     L       5     L       5      4    9   12     4    4    5    7    8    9   10   11   19   26   33   41   43   48   51   52   54   56   59   61 
LCS_GDT     V       6     V       6      4    9   16     4    4    5    6    7    9   10   11   13   27   36   41   43   48   51   52   54   56   59   61 
LCS_GDT     R       7     R       7      4    9   16     4    4    5    9   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     N       8     N       8      4    9   16     4    4    7    9   11   15   18   23   26   31   37   41   43   47   51   52   54   56   59   61 
LCS_GDT     G       9     G       9      3    9   16     3    4    4    7    8   11   13   16   22   25   31   36   39   41   45   48   50   53   56   56 
LCS_GDT     I      10     I      10      4    9   16     3    4    4    7   10   11   14   15   17   21   29   36   39   41   45   46   47   48   49   51 
LCS_GDT     Q      11     Q      11      4    7   16     3    4    6    7   11   12   14   15   17   19   22   26   31   32   38   39   43   48   49   51 
LCS_GDT     A      12     A      12      6    7   16     3    6    6    7   10   11   12   13   16   19   20   22   28   34   36   37   41   48   49   51 
LCS_GDT     V      13     V      13      6    7   17     3    6    6    6    8   10   14   15   16   19   21   24   27   34   36   36   40   48   49   51 
LCS_GDT     G      14     G      14      6    7   18     3    6    6    7    8   10   14   15   16   19   21   24   28   34   36   36   40   48   49   51 
LCS_GDT     D      15     D      15      6    7   18     3    6    6    7    8   10   14   15   16   19   21   25   28   34   36   37   40   48   49   51 
LCS_GDT     G      16     G      16      6    9   18     3    6    6    8    9   10   14   15   16   19   21   24   27   34   36   36   40   44   49   51 
LCS_GDT     L      17     L      17      6    9   18     3    6    6    8    9    9   10   12   15   17   18   21   27   30   33   36   40   44   47   50 
LCS_GDT     T      18     T      18      4    9   18     3    4    5    8    9   10   14   15   16   17   21   24   27   30   33   36   40   44   47   50 
LCS_GDT     S      19     S      19      4    9   18     3    4    5    8    9   10   14   15   16   17   21   24   27   30   33   36   40   44   47   50 
LCS_GDT     L      20     L      20      5    9   18     3    4    6    8    9   10   10   15   16   18   21   26   29   30   32   38   43   46   47   51 
LCS_GDT     I      21     I      21      5    9   18     3    6    6    8    9   10   12   12   15   18   21   24   29   30   32   39   43   47   52   53 
LCS_GDT     I      22     I      22      5    9   20     4    6    6    8    9   10   12   12   15   16   20   24   28   32   38   42   46   50   52   54 
LCS_GDT     V      23     V      23      5    9   21     4    6    6    8    9   10   10   12   15   16   16   23   27   33   39   41   43   48   51   54 
LCS_GDT     G      24     G      24      5    9   28     4    6    6    8    9   10   10   12   15   19   24   28   30   35   39   41   45   49   51   54 
LCS_GDT     K      25     K      25      5    9   28     4    6    6    7    9   11   14   17   20   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     K      26     K      26      5    9   28     4    4    5    7    9   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     S      27     S      27      5    9   28     4    4    5    7    9   11   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     V      28     V      28      5   10   28     4    4    4    6    9   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     L      29     L      29      5   10   28     4    4    4    9   10   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     K      30     K      30      6   10   28     3    5    6    9   10   13   15   17   21   23   26   28   30   33   39   41   45   49   51   54 
LCS_GDT     N      31     N      31      6   10   28     3    5    6    9   10   11   15   17   21   23   26   28   30   33   39   41   43   46   51   54 
LCS_GDT     V      32     V      32      6   10   28     3    5    6    9   10   13   15   17   21   23   26   28   30   34   39   41   45   49   51   54 
LCS_GDT     T      33     T      33      6   10   28     3    5    6    9   10   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     F      34     F      34      6   10   28     3    5    6    9   10   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     E      35     E      35      6   10   28     3    5    6    9   10   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     G      36     G      36      6   10   28     3    5    6    9   10   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     K      37     K      37      3   10   28     3    3    6    9   10   13   15   17   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     F      38     F      38      7   10   28     3    5    8    9    9   10   12   14   21   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     K      39     K      39      7   10   28     3    5    8    9    9   10   13   16   19   22   25   28   30   35   39   41   45   49   51   54 
LCS_GDT     E      40     E      40      7   10   28     3    5    8    9    9   10   12   13   15   18   21   25   29   35   39   41   45   49   51   54 
LCS_GDT     V      41     V      41      7   10   28     3    5    8    9    9   10   11   14   19   22   25   28   30   35   39   41   45   49   51   54 
LCS_GDT     A      42     A      42      7   10   28     4    5    8    9    9   11   13   16   19   22   25   28   30   35   39   41   45   49   51   54 
LCS_GDT     Q      43     Q      43      7   10   28     4    5    8    9    9   10   11   13   15   16   21   24   29   32   34   34   39   45   49   54 
LCS_GDT     K      44     K      44      7   10   28     4    5    8    9    9   10   11   12   15   16   19   23   25   28   32   34   36   37   40   45 
LCS_GDT     F      45     F      45      6   10   28     4    5    8    9    9   11   13   16   19   22   24   25   29   32   34   37   42   46   49   54 
LCS_GDT     V      46     V      46      5    6   28     3    5    5    6    8   11   13   16   19   22   24   25   29   35   39   41   45   49   51   54 
LCS_GDT     T      47     T      47      5    6   28     3    5    5    6    8   11   13   16   19   22   24   25   29   35   39   41   45   49   51   54 
LCS_GDT     D      48     D      48      5    6   28     3    5    5    6    8   11   13   16   19   22   24   25   29   35   39   41   45   49   51   54 
LCS_GDT     G      49     G      49      4    6   28     1    4    5    6    7    9   13   16   19   22   24   25   29   32   39   41   45   49   51   54 
LCS_GDT     D      50     D      50      4    6   28     3    4    4    6    7    9   13   16   19   22   24   25   29   32   34   36   42   46   51   54 
LCS_GDT     S      51     S      51      5    6   28     5    5    5    5    7    9   13   16   19   22   24   25   29   32   35   39   42   47   51   54 
LCS_GDT     W      52     W      52      5    6   28     5    5    5    5    6    7   10   13   15   17   21   25   29   33   38   42   46   50   52   54 
LCS_GDT     N      53     N      53      5    6   28     5    5    5    6    8    8   12   15   17   22   23   26   31   34   38   42   46   50   52   55 
LCS_GDT     S      54     S      54      5    6   25     5    5    5    8    9   11   12   15   17   19   21   26   29   34   38   42   46   50   52   55 
LCS_GDT     M      55     M      55      5    6   25     5    5    5    8    9   11   13   15   17   22   24   26   31   34   38   42   46   50   52   55 
LCS_GDT     I      56     I      56      3    6   25     1    3    3    4    8    9   12   14   17   22   23   26   31   34   38   42   46   50   52   55 
LCS_GDT     S      57     S      57      4   10   25     3    3    4    6    8   11   13   14   17   22   24   26   31   34   38   42   46   50   52   55 
LCS_GDT     R      58     R      58      6   11   25     4    4    7    9   11   12   14   15   19   22   24   26   31   34   38   42   46   50   52   55 
LCS_GDT     I      59     I      59      6   11   22     4    5    7    9   11   12   14   17   21   23   26   28   30   35   39   41   46   50   52   54 
LCS_GDT     P      60     P      60      6   11   22     4    6    7    9   11   12   14   15   20   23   26   28   30   35   39   41   45   49   51   54 
LCS_GDT     A      61     A      61      6   11   22     4    5    6    9   11   12   14   15   17   18   19   20   25   30   35   37   43   45   49   54 
LCS_GDT     S      62     S      62      6   11   22     1    5    7    9   11   12   14   15   17   18   19   20   22   23   27   31   32   35   37   42 
LCS_GDT     G      63     G      63      6   11   22     3    5    7    9   11   12   14   15   17   18   19   20   22   25   27   28   31   35   37   39 
LCS_GDT     R      64     R      64      4   11   22     3    4    7    9   11   12   14   15   17   18   19   20   23   26   29   31   33   37   41   47 
LCS_GDT     H      65     H      65      4   11   22     3    4    7    9   11   12   14   15   17   19   26   27   30   35   39   41   45   49   51   54 
LCS_GDT     P      66     P      66      4   11   22     3    4    5    8   11   12   14   15   17   21   26   27   29   32   34   41   45   49   51   54 
LCS_GDT     L      67     L      67      4   11   22     3    4    5    8   11   13   15   17   21   23   26   28   31   35   39   44   45   49   51   54 
LCS_GDT     H      68     H      68      3   11   22     3    3    4    8    9   13   15   17   22   25   31   36   39   41   45   46   47   49   51   54 
LCS_GDT     Y      69     Y      69      4    5   22     3    3    4    9   10   12   14   17   22   25   31   36   39   41   45   46   47   49   51   54 
LCS_GDT     E      70     E      70      4    5   22     3    3    4    4    8   11   13   17   21   25   31   36   39   41   45   46   47   49   51   54 
LCS_GDT     L      71     L      71      4    5   22     3    3    4    5    8   14   18   21   22   25   31   36   39   41   45   46   47   49   51   54 
LCS_GDT     A      72     A      72      4    5   22     3    4    4    5   10   14   18   21   22   25   31   36   39   41   45   46   47   49   51   54 
LCS_GDT     H      73     H      73      4    5   22     3    4    4    6   10   14   18   21   22   25   31   36   39   41   45   46   47   49   51   54 
LCS_GDT     L      74     L      74      4    5   21     3    4    4    4    8   11   11   13   17   22   27   30   38   41   45   46   47   49   51   54 
LCS_GDT     I      75     I      75      4    5   27     3    4    4    5    8   11   11   13   14   20   21   26   32   35   38   44   45   49   52   55 
LCS_GDT     T      76     T      76      4    6   27     3    4    4    4    6    8    9   13   14   20   21   25   29   34   38   42   46   50   52   55 
LCS_GDT     V      77     V      77      4    6   27     3    4    4    6    8    9   12   12   13   15   20   23   30   34   38   42   46   50   52   55 
LCS_GDT     P      78     P      78      4    6   27     3    3    4    6    8   12   17   21   24   26   28   30   34   36   38   42   46   50   52   55 
LCS_GDT     D      79     D      79      4    6   27     3    3    4    6    8   12   17   21   24   26   28   30   34   36   38   42   46   50   52   55 
LCS_GDT     A      80     A      80      4    6   27     3    3    4    6    8   12   17   21   24   26   28   30   34   36   38   42   46   50   52   55 
LCS_GDT     S      81     S      81      4    6   27     3    3    4    6    8   12   16   21   24   26   28   30   34   36   38   42   46   50   52   54 
LCS_GDT     S      82     S      82      4    6   27     3    3    4    6    9   12   16   21   24   26   28   30   34   35   38   42   46   50   52   54 
LCS_GDT     R      83     R      83      4    6   27     3    3    4    5   11   14   16   21   24   26   28   30   34   36   37   42   46   50   52   53 
LCS_GDT     G      84     G      84      4    5   27     4   10   12   14   16   17   17   20   22   26   28   30   34   36   37   41   44   48   51   55 
LCS_GDT     N      85     N      85      4    5   27     4   10   13   14   16   17   17   20   24   26   28   30   34   36   38   42   46   50   52   55 
LCS_GDT     T      86     T      86      4    5   27     4    4    7   11   16   17   17   21   24   26   28   30   34   36   38   42   46   50   52   55 
LCS_GDT     P      87     P      87      4    5   27     3    3    4    6    7   17   17   19   21   26   28   30   34   36   38   42   46   50   52   55 
LCS_GDT     T      88     T      88      3   14   27     3    3    4    5   13   14   17   21   24   26   28   30   34   36   38   42   46   50   52   55 
LCS_GDT     N      89     N      89     12   14   27     4    9   12   14   16   17   17   20   24   26   28   30   34   36   45   46   47   50   52   55 
LCS_GDT     A      90     A      90     12   14   27     7   10   13   14   16   17   18   21   24   26   31   36   39   41   45   46   47   50   52   55 
LCS_GDT     H      91     H      91     12   14   27     7   10   13   14   16   17   18   21   24   26   31   36   39   41   45   46   47   50   52   55 
LCS_GDT     S      92     S      92     12   14   27     7   10   13   14   16   17   17   21   24   26   28   36   39   41   45   46   47   50   52   55 
LCS_GDT     I      93     I      93     12   14   27     6   10   13   14   16   17   17   21   24   26   31   36   39   42   45   52   54   54   56   57 
LCS_GDT     Y      94     Y      94     12   14   27     7   10   13   14   16   17   17   21   24   26   31   36   39   41   45   46   47   50   54   56 
LCS_GDT     K      95     K      95     12   14   27     7   10   13   14   16   17   17   21   24   26   28   36   39   41   45   46   47   50   52   55 
LCS_GDT     E      96     E      96     12   14   27     7   10   13   14   16   17   17   21   24   26   28   30   34   44   51   52   54   56   58   61 
LCS_GDT     L      97     L      97     12   14   27     7   10   13   14   16   17   17   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     K      98     K      98     12   14   27     5   10   13   14   16   17   17   21   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     P      99     P      99     12   14   27     5    8   13   14   16   17   17   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     I     100     I     100     12   14   36     5   10   13   14   16   17   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     N     101     N     101     12   14   36     5    6   13   14   16   17   17   21   24   26   28   36   43   43   48   52   54   56   59   61 
LCS_GDT     Y     102     Y     102      3   13   36     3    3    5    9   12   16   17   18   22   26   28   32   40   42   46   49   54   56   59   61 
LCS_GDT     P     103     P     103      3    5   36     3    3    4    5    7   10   14   18   21   26   28   36   43   43   48   52   54   56   59   61 
LCS_GDT     E     104     E     104      3    5   36     3    3    4    4    5    8   13   16   17   26   27   32   35   40   45   49   54   56   59   61 
LCS_GDT     D     105     D     105      3    5   36     3    3    4    5    6    8   13   16   21   26   28   32   35   41   45   49   54   56   59   61 
LCS_GDT     T     106     T     106      4    5   36     3    4    4    5    6    8   13   16   21   26   28   32   40   42   46   49   54   56   59   61 
LCS_GDT     K     107     K     107      4    5   36     3    4    4    5    6    7   11   14   15   16   25   28   33   35   38   40   45   48   52   55 
LCS_GDT     N     108     N     108      5    8   36     3    4    5    6    8   10   11   14   19   26   28   30   34   36   37   41   44   48   51   55 
LCS_GDT     V     109     V     109      5    8   36     1    4    5    6    8   10   12   18   22   26   28   30   34   36   38   43   47   54   57   59 
LCS_GDT     H     110     H     110      5    8   36     3    4    6    6    8    9   12   18   19   24   28   32   35   40   42   49   54   56   59   61 
LCS_GDT     F     111     F     111      5    8   36     3    4    6    6    8   10   13   18   21   26   29   36   43   44   48   52   54   56   59   61 
LCS_GDT     V     112     V     112      5    8   36     3    4    6    6    8   10   14   18   24   26   33   41   43   48   51   52   54   56   59   61 
LCS_GDT     L     113     L     113      4    8   36     3    4    6   10   12   14   17   20   24   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     F     114     F     114      3    8   36     3    4    5    6    8   10   14   19   22   29   35   40   43   48   51   52   54   56   59   61 
LCS_GDT     A     115     A     115      3    8   36     3    4    5   10   13   14   18   21   24   26   33   39   43   48   51   52   54   56   59   61 
LCS_GDT     E     116     E     116      3   17   36     3    4    5    9   12   16   18   21   22   27   31   39   43   48   51   52   54   56   58   61 
LCS_GDT     Y     117     Y     117     15   17   38     4    8   14   15   16   16   18   21   22   27   31   36   43   48   51   52   54   56   59   61 
LCS_GDT     P     118     P     118     15   17   38     4    4    7   15   16   16   17   19   22   27   30   35   43   48   51   52   54   56   59   61 
LCS_GDT     D     119     D     119     15   17   38     5   12   14   15   16   16   17   19   25   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     V     120     V     120     15   17   38     5   12   14   15   16   16   18   21   22   27   31   39   43   48   51   52   54   56   59   61 
LCS_GDT     L     121     L     121     15   17   38     9   12   14   15   16   16   17   21   22   27   31   36   43   48   51   52   54   56   59   61 
LCS_GDT     S     122     S     122     15   17   38     9   12   14   15   16   16   17   19   24   30   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     H     123     H     123     15   17   38     9   12   14   15   16   16   17   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     V     124     V     124     15   17   38     9   12   14   15   16   16   18   21   24   30   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     A     125     A     125     15   17   38     9   12   14   15   16   16   18   21   24   30   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     A     126     A     126     15   17   38     9   12   14   15   16   16   17   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     I     127     I     127     15   17   38     9   12   14   15   16   16   17   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     A     128     A     128     15   17   38     9   12   14   15   16   16   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     R     129     R     129     15   17   38     9   12   14   15   16   16   17   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     T     130     T     130     15   17   38     3   12   14   15   16   16   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     F     131     F     131     15   17   38     3   12   14   15   16   16   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     C     132     C     132     14   17   38     3    4   14   15   16   16   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     K     133     K     133      4   17   38     3    4    6    8   10   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     F     134     F     134      4    6   38     3    4    5    8   10   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     S     135     S     135      4    6   38     3    4    5    8   10   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     M     136     M     136      4    7   38     3    4    4    5    7    7   10   10   14   22   29   35   42   46   50   52   54   56   59   61 
LCS_GDT     K     137     K     137      4    7   38     3    4    5    8   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     T     138     T     138      4    7   38     3    4    5    6    7    8   16   19   25   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     S     139     S     139      4    7   38     3    4    5    5    7   12   16   19   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     G     140     G     140      4    8   38     3    4    5    8   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     I     141     I     141      3    8   38     3    3    4    6    9   11   12   19   23   29   36   41   43   48   51   52   54   56   59   61 
LCS_GDT     R     142     R     142      4    9   38     3    3    5    7    9   11   17   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     E     143     E     143      4    9   38     3    3    5    6    9   11   14   18   25   29   36   41   43   48   51   52   54   56   59   61 
LCS_GDT     L     144     L     144      4    9   38     1    3    5    8   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     N     145     N     145      5    9   38     3    4    7    9   11   12   15   19   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     V     146     V     146      5    9   38     3    4    7    9   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     N     147     N     147      5    9   38     3    4    7    9   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     I     148     I     148      5    9   38     2    4    7    9   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     D     149     D     149      5    9   38     3    4    7    8   11   15   18   23   26   31   37   41   43   47   51   52   54   56   59   61 
LCS_GDT     V     150     V     150      4    9   38     3    4    7    9   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     V     151     V     151      4    9   38     3    4    7    9   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     C     152     C     152      4    9   38     3    4    7    9   11   15   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     D     153     D     153      4    9   38     3    4    7    8   13   14   18   23   26   31   37   41   43   48   51   52   54   56   59   61 
LCS_GDT     K     154     K     154      4    7   38     3    4    4    6    9   10   12   16   23   26   35   41   43   48   51   52   54   56   59   61 
LCS_GDT     L     155     L     155      4    7   38     3    4    4    6    8   10   10   13   16   21   27   35   39   43   46   52   54   56   59   61 
LCS_AVERAGE  LCS_A:   9.70  (   4.09    6.27   18.75 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     12     14     15     16     17     18     23     26     31     37     41     43     48     51     52     54     56     59     61 
GDT PERCENT_CA   5.84   7.79   9.09   9.74  10.39  11.04  11.69  14.94  16.88  20.13  24.03  26.62  27.92  31.17  33.12  33.77  35.06  36.36  38.31  39.61
GDT RMS_LOCAL    0.18   0.51   0.73   0.89   1.08   1.63   2.50   3.02   3.20   3.59   4.09   4.40   4.55   5.01   5.13   5.19   5.35   5.66   6.15   6.29
GDT RMS_ALL_CA  30.33  30.37  30.42  30.38  30.34  29.23  22.35  27.65  27.61  27.48  27.82  28.27  28.24  28.60  28.34  28.39  28.34  28.75  29.20  29.17

#      Molecule1      Molecule2       DISTANCE
LGA    T       2      T       2         22.218
LGA    Q       3      Q       3         18.000
LGA    V       4      V       4         12.748
LGA    L       5      L       5          7.246
LGA    V       6      V       6          6.183
LGA    R       7      R       7          2.171
LGA    N       8      N       8          3.406
LGA    G       9      G       9          8.843
LGA    I      10      I      10         13.617
LGA    Q      11      Q      11         15.903
LGA    A      12      A      12         22.763
LGA    V      13      V      13         26.647
LGA    G      14      G      14         31.905
LGA    D      15      D      15         36.891
LGA    G      16      G      16         37.738
LGA    L      17      L      17         36.006
LGA    T      18      T      18         34.533
LGA    S      19      S      19         30.622
LGA    L      20      L      20         26.307
LGA    I      21      I      21         24.439
LGA    I      22      I      22         25.075
LGA    V      23      V      23         25.394
LGA    G      24      G      24         29.478
LGA    K      25      K      25         34.616
LGA    K      26      K      26         40.950
LGA    S      27      S      27         44.526
LGA    V      28      V      28         43.615
LGA    L      29      L      29         45.876
LGA    K      30      K      30         52.808
LGA    N      31      N      31         55.740
LGA    V      32      V      32         51.311
LGA    T      33      T      33         54.425
LGA    F      34      F      34         50.297
LGA    E      35      E      35         50.038
LGA    G      36      G      36         46.219
LGA    K      37      K      37         40.104
LGA    F      38      F      38         36.829
LGA    K      39      K      39         39.084
LGA    E      40      E      40         38.216
LGA    V      41      V      41         32.727
LGA    A      42      A      42         31.928
LGA    Q      43      Q      43         35.956
LGA    K      44      K      44         35.227
LGA    F      45      F      45         32.205
LGA    V      46      V      46         35.402
LGA    T      47      T      47         40.411
LGA    D      48      D      48         44.147
LGA    G      49      G      49         46.056
LGA    D      50      D      50         48.315
LGA    S      51      S      51         44.297
LGA    W      52      W      52         41.985
LGA    N      53      N      53         41.871
LGA    S      54      S      54         41.415
LGA    M      55      M      55         38.583
LGA    I      56      I      56         37.925
LGA    S      57      S      57         44.772
LGA    R      58      R      58         48.445
LGA    I      59      I      59         47.130
LGA    P      60      P      60         49.431
LGA    A      61      A      61         48.460
LGA    S      62      S      62         46.891
LGA    G      63      G      63         46.910
LGA    R      64      R      64         42.857
LGA    H      65      H      65         41.071
LGA    P      66      P      66         41.235
LGA    L      67      L      67         37.247
LGA    H      68      H      68         37.450
LGA    Y      69      Y      69         35.579
LGA    E      70      E      70         30.671
LGA    L      71      L      71         29.225
LGA    A      72      A      72         27.831
LGA    H      73      H      73         25.412
LGA    L      74      L      74         25.101
LGA    I      75      I      75         22.430
LGA    T      76      T      76         27.377
LGA    V      77      V      77         25.634
LGA    P      78      P      78         28.446
LGA    D      79      D      79         31.813
LGA    A      80      A      80         37.368
LGA    S      81      S      81         34.374
LGA    S      82      S      82         39.397
LGA    R      83      R      83         42.416
LGA    G      84      G      84         40.608
LGA    N      85      N      85         34.654
LGA    T      86      T      86         32.217
LGA    P      87      P      87         29.596
LGA    T      88      T      88         23.430
LGA    N      89      N      89         20.709
LGA    A      90      A      90         19.543
LGA    H      91      H      91         20.499
LGA    S      92      S      92         16.661
LGA    I      93      I      93         11.482
LGA    Y      94      Y      94         13.631
LGA    K      95      K      95         13.607
LGA    E      96      E      96          8.470
LGA    L      97      L      97          5.720
LGA    K      98      K      98          7.153
LGA    P      99      P      99          4.021
LGA    I     100      I     100          2.924
LGA    N     101      N     101          8.654
LGA    Y     102      Y     102         11.110
LGA    P     103      P     103         10.029
LGA    E     104      E     104         12.702
LGA    D     105      D     105         13.717
LGA    T     106      T     106         11.934
LGA    K     107      K     107         18.489
LGA    N     108      N     108         19.943
LGA    V     109      V     109         15.229
LGA    H     110      H     110         12.788
LGA    F     111      F     111          8.007
LGA    V     112      V     112          6.856
LGA    L     113      L     113          7.134
LGA    F     114      F     114          8.297
LGA    A     115      A     115          9.248
LGA    E     116      E     116         11.659
LGA    Y     117      Y     117         11.860
LGA    P     118      P     118         11.153
LGA    D     119      D     119          7.140
LGA    V     120      V     120          9.607
LGA    L     121      L     121         10.463
LGA    S     122      S     122          7.125
LGA    H     123      H     123          5.130
LGA    V     124      V     124          6.980
LGA    A     125      A     125          6.161
LGA    A     126      A     126          3.674
LGA    I     127      I     127          3.992
LGA    A     128      A     128          4.270
LGA    R     129      R     129          3.982
LGA    T     130      T     130          3.756
LGA    F     131      F     131          2.753
LGA    C     132      C     132          3.432
LGA    K     133      K     133          3.975
LGA    F     134      F     134          3.295
LGA    S     135      S     135          2.986
LGA    M     136      M     136          6.636
LGA    K     137      K     137          2.392
LGA    T     138      T     138          5.700
LGA    S     139      S     139          5.206
LGA    G     140      G     140          1.409
LGA    I     141      I     141          5.078
LGA    R     142      R     142          3.659
LGA    E     143      E     143          4.990
LGA    L     144      L     144          2.705
LGA    N     145      N     145          4.557
LGA    V     146      V     146          3.809
LGA    N     147      N     147          3.502
LGA    I     148      I     148          3.019
LGA    D     149      D     149          3.640
LGA    V     150      V     150          2.226
LGA    V     151      V     151          3.501
LGA    C     152      C     152          2.824
LGA    D     153      D     153          5.317
LGA    K     154      K     154          9.053
LGA    L     155      L     155          9.454

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     23    3.02    16.558    13.881     0.737

LGA_LOCAL      RMSD =  3.021  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 28.119  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 16.788  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.060538 * X  +  -0.371465 * Y  +  -0.926471 * Z  +   7.392315
  Y_new =   0.857795 * X  +   0.493985 * Y  +  -0.142011 * Z  +  46.315212
  Z_new =   0.510415 * X  +  -0.786125 * Y  +   0.348545 * Z  +  21.051203 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.153469    1.988124  [ DEG:   -66.0889    113.9111 ]
  Theta =  -0.535667   -2.605926  [ DEG:   -30.6915   -149.3085 ]
  Phi   =   1.500340   -1.641253  [ DEG:    85.9631    -94.0369 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0318TS393_1-D1                               
REMARK     2: T0318_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0318TS393_1-D1.T0318_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   23   3.02  13.881    16.79
REMARK  ---------------------------------------------------------- 
MOLECULE T0318TS393_1-D1
PFRMAT TS
TARGET T0318
MODEL 1
PARENT N/A
ATOM      2  CA  THR     2      45.921  36.728  17.919  1.00 25.00           C
ATOM      3  CA  GLN     3      42.172  36.342  17.444  1.00 25.00           C
ATOM      4  CA  VAL     4      38.512  37.414  16.986  1.00 25.00           C
ATOM      5  CA  LEU     5      35.001  37.448  15.485  1.00 25.00           C
ATOM      6  CA  VAL     6      33.990  34.360  13.514  1.00 25.00           C
ATOM      7  CA  ARG     7      30.380  33.757  14.360  1.00 25.00           C
ATOM      8  CA  ASN     8      29.072  30.261  13.855  1.00 25.00           C
ATOM      9  CA  GLY     9      28.470  26.534  14.338  1.00 25.00           C
ATOM     10  CA  ILE    10      30.184  25.475  11.111  1.00 25.00           C
ATOM     11  CA  GLN    11      31.689  22.065  10.649  1.00 25.00           C
ATOM     12  CA  ALA    12      30.325  18.493  11.061  1.00 25.00           C
ATOM     13  CA  VAL    13      26.595  18.686  11.912  1.00 25.00           C
ATOM     14  CA  GLY    14      23.766  17.485   9.598  1.00 25.00           C
ATOM     15  CA  ASP    15      21.192  18.098   6.904  1.00 25.00           C
ATOM     16  CA  GLY    16      19.607  21.168   8.623  1.00 25.00           C
ATOM     17  CA  LEU    17      19.873  24.767   9.926  1.00 25.00           C
ATOM     18  CA  THR    18      16.460  26.313  10.026  1.00 25.00           C
ATOM     19  CA  SER    19      17.552  29.742  11.388  1.00 25.00           C
ATOM     20  CA  LEU    20      17.931  33.257  12.785  1.00 25.00           C
ATOM     21  CA  ILE    21      16.060  36.565  12.978  1.00 25.00           C
ATOM     22  CA  ILE    22      15.395  39.849  11.301  1.00 25.00           C
ATOM     23  CA  VAL    23      13.298  42.749  10.068  1.00 25.00           C
ATOM     24  CA  GLY    24      12.328  45.268   7.350  1.00 25.00           C
ATOM     25  CA  LYS    25      10.535  46.653   4.272  1.00 25.00           C
ATOM     26  CA  LYS    26      11.505  48.891   1.279  1.00 25.00           C
ATOM     27  CA  SER    27      11.064  52.620   0.629  1.00 25.00           C
ATOM     28  CA  VAL    28      13.759  53.175  -2.000  1.00 25.00           C
ATOM     29  CA  LEU    29      11.812  50.753  -4.157  1.00 25.00           C
ATOM     30  CA  LYS    30       9.840  53.639  -5.695  1.00 25.00           C
ATOM     31  CA  ASN    31      10.585  55.561  -8.875  1.00 25.00           C
ATOM     32  CA  VAL    32      14.262  55.700  -7.846  1.00 25.00           C
ATOM     33  CA  THR    33      16.973  56.228 -10.530  1.00 25.00           C
ATOM     34  CA  PHE    34      18.663  53.266  -8.767  1.00 25.00           C
ATOM     35  CA  GLU    35      21.897  53.713 -10.740  1.00 25.00           C
ATOM     36  CA  GLY    36      23.986  56.041  -8.510  1.00 25.00           C
ATOM     37  CA  LYS    37      27.672  55.736  -7.621  1.00 25.00           C
ATOM     38  CA  PHE    38      28.696  53.851  -4.470  1.00 25.00           C
ATOM     39  CA  LYS    39      26.077  55.053  -2.032  1.00 25.00           C
ATOM     40  CA  GLU    40      22.479  53.773  -1.738  1.00 25.00           C
ATOM     41  CA  VAL    41      23.761  50.180  -1.386  1.00 25.00           C
ATOM     42  CA  ALA    42      26.205  51.295   1.344  1.00 25.00           C
ATOM     43  CA  GLN    43      23.366  53.086   3.189  1.00 25.00           C
ATOM     44  CA  LYS    44      21.200  49.936   2.964  1.00 25.00           C
ATOM     45  CA  PHE    45      24.083  47.825   4.344  1.00 25.00           C
ATOM     46  CA  VAL    46      25.817  45.995   1.550  1.00 25.00           C
ATOM     47  CA  THR    47      27.454  46.169  -1.863  1.00 25.00           C
ATOM     48  CA  ASP    48      26.133  44.240  -4.822  1.00 25.00           C
ATOM     49  CA  GLY    49      22.367  43.535  -4.520  1.00 25.00           C
ATOM     50  CA  ASP    50      19.979  41.662  -2.169  1.00 25.00           C
ATOM     51  CA  SER    51      20.179  39.666   1.063  1.00 25.00           C
ATOM     52  CA  TRP    52      16.605  39.276   2.381  1.00 25.00           C
ATOM     53  CA  ASN    53      17.454  35.791   3.724  1.00 25.00           C
ATOM     54  CA  SER    54      20.573  37.189   5.450  1.00 25.00           C
ATOM     55  CA  MET    55      18.480  39.987   7.020  1.00 25.00           C
ATOM     56  CA  ILE    56      17.198  43.544   6.405  1.00 25.00           C
ATOM     57  CA  SER    57      16.599  44.523   2.771  1.00 25.00           C
ATOM     58  CA  ARG    58      13.460  43.948   0.755  1.00 25.00           C
ATOM     59  CA  ILE    59      14.700  41.876  -2.248  1.00 25.00           C
ATOM     60  CA  PRO    60      12.022  39.649  -3.760  1.00 25.00           C
ATOM     61  CA  ALA    61      12.046  36.009  -4.878  1.00 25.00           C
ATOM     62  CA  SER    62      14.685  33.679  -6.448  1.00 25.00           C
ATOM     63  CA  GLY    63      17.551  35.446  -8.233  1.00 25.00           C
ATOM     64  CA  ARG    64      19.956  34.452  -5.483  1.00 25.00           C
ATOM     65  CA  HIS    65      21.478  36.725  -2.859  1.00 25.00           C
ATOM     66  CA  PRO    66      23.767  38.738  -5.113  1.00 25.00           C
ATOM     67  CA  LEU    67      25.308  40.099  -1.939  1.00 25.00           C
ATOM     68  CA  HIS    68      28.456  38.081  -2.767  1.00 25.00           C
ATOM     69  CA  TYR    69      30.631  40.720  -1.043  1.00 25.00           C
ATOM     70  CA  GLU    70      28.372  40.598   2.048  1.00 25.00           C
ATOM     71  CA  LEU    71      28.626  36.777   2.112  1.00 25.00           C
ATOM     72  CA  ALA    72      32.441  37.001   1.861  1.00 25.00           C
ATOM     73  CA  HIS    73      32.508  39.520   4.746  1.00 25.00           C
ATOM     74  CA  LEU    74      30.314  37.197   6.857  1.00 25.00           C
ATOM     75  CA  ILE    75      28.515  39.843   8.930  1.00 25.00           C
ATOM     76  CA  THR    76      25.640  39.102   6.596  1.00 25.00           C
ATOM     77  CA  VAL    77      24.340  42.645   7.369  1.00 25.00           C
ATOM     78  CA  PRO    78      26.703  45.532   8.036  1.00 25.00           C
ATOM     79  CA  ASP    79      29.447  43.862   5.927  1.00 25.00           C
ATOM     80  CA  ALA    80      31.451  46.384   3.829  1.00 25.00           C
ATOM     81  CA  SER    81      31.598  48.260   7.097  1.00 25.00           C
ATOM     82  CA  SER    82      35.306  48.951   6.421  1.00 25.00           C
ATOM     83  CA  ARG    83      37.556  46.417   4.767  1.00 25.00           C
ATOM     84  CA  GLY    84      37.079  42.662   4.725  1.00 25.00           C
ATOM     85  CA  ASN    85      37.513  42.997   8.506  1.00 25.00           C
ATOM     86  CA  THR    86      39.357  45.681  10.531  1.00 25.00           C
ATOM     87  CA  PRO    87      39.350  43.242  13.484  1.00 25.00           C
ATOM     88  CA  THR    88      35.560  43.649  13.104  1.00 25.00           C
ATOM     89  CA  ASN    89      35.069  42.742  16.792  1.00 25.00           C
ATOM     90  CA  ALA    90      37.729  45.307  17.802  1.00 25.00           C
ATOM     91  CA  HIS    91      35.997  47.978  15.675  1.00 25.00           C
ATOM     92  CA  SER    92      32.639  47.142  17.315  1.00 25.00           C
ATOM     93  CA  ILE    93      34.238  47.416  20.785  1.00 25.00           C
ATOM     94  CA  TYR    94      35.741  50.813  19.851  1.00 25.00           C
ATOM     95  CA  LYS    95      32.321  52.016  18.618  1.00 25.00           C
ATOM     96  CA  GLU    96      30.705  50.857  21.891  1.00 25.00           C
ATOM     97  CA  LEU    97      33.387  52.712  23.899  1.00 25.00           C
ATOM     98  CA  LYS    98      32.771  55.882  21.841  1.00 25.00           C
ATOM     99  CA  PRO    99      29.003  55.582  22.459  1.00 25.00           C
ATOM    100  CA  ILE   100      29.628  55.172  26.215  1.00 25.00           C
ATOM    101  CA  ASN   101      28.084  57.712  28.595  1.00 25.00           C
ATOM    102  CA  TYR   102      28.698  60.145  25.716  1.00 25.00           C
ATOM    103  CA  PRO   103      31.895  61.130  23.788  1.00 25.00           C
ATOM    104  CA  GLU   104      33.463  60.684  27.242  1.00 25.00           C
ATOM    105  CA  ASP   105      37.249  60.352  26.838  1.00 25.00           C
ATOM    106  CA  THR   106      36.363  56.703  26.236  1.00 25.00           C
ATOM    107  CA  LYS   107      36.463  56.216  30.007  1.00 25.00           C
ATOM    108  CA  ASN   108      33.006  56.378  31.513  1.00 25.00           C
ATOM    109  CA  VAL   109      31.172  53.463  30.003  1.00 25.00           C
ATOM    110  CA  HIS   110      31.417  50.280  27.849  1.00 25.00           C
ATOM    111  CA  PHE   111      30.731  47.045  26.055  1.00 25.00           C
ATOM    112  CA  VAL   112      33.965  45.184  25.342  1.00 25.00           C
ATOM    113  CA  LEU   113      36.257  43.164  23.050  1.00 25.00           C
ATOM    114  CA  PHE   114      35.878  39.906  21.259  1.00 25.00           C
ATOM    115  CA  ALA   115      34.659  36.367  20.739  1.00 25.00           C
ATOM    116  CA  GLU   116      35.980  35.449  24.160  1.00 25.00           C
ATOM    117  CA  TYR   117      32.951  36.581  26.222  1.00 25.00           C
ATOM    118  CA  PRO   118      30.171  36.146  23.681  1.00 25.00           C
ATOM    119  CA  ASP   119      28.046  38.624  25.682  1.00 25.00           C
ATOM    120  CA  VAL   120      30.715  41.330  25.211  1.00 25.00           C
ATOM    121  CA  LEU   121      30.790  40.636  21.446  1.00 25.00           C
ATOM    122  CA  SER   122      26.972  40.895  21.298  1.00 25.00           C
ATOM    123  CA  HIS   123      27.100  44.224  23.187  1.00 25.00           C
ATOM    124  CA  VAL   124      29.750  45.532  20.751  1.00 25.00           C
ATOM    125  CA  ALA   125      27.577  44.473  17.781  1.00 25.00           C
ATOM    126  CA  ALA   126      24.558  46.256  19.321  1.00 25.00           C
ATOM    127  CA  ILE   127      26.655  49.420  19.829  1.00 25.00           C
ATOM    128  CA  ALA   128      27.822  49.262  16.185  1.00 25.00           C
ATOM    129  CA  ARG   129      24.196  48.877  15.015  1.00 25.00           C
ATOM    130  CA  THR   130      23.165  51.893  17.138  1.00 25.00           C
ATOM    131  CA  PHE   131      26.026  53.955  15.644  1.00 25.00           C
ATOM    132  CA  CYS   132      24.940  52.947  12.112  1.00 25.00           C
ATOM    133  CA  LYS   133      21.333  53.959  12.906  1.00 25.00           C
ATOM    134  CA  PHE   134      22.547  57.339  14.234  1.00 25.00           C
ATOM    135  CA  SER   135      25.843  58.921  13.183  1.00 25.00           C
ATOM    136  CA  MET   136      28.996  60.815  13.909  1.00 25.00           C
ATOM    137  CA  LYS   137      27.796  63.827  12.014  1.00 25.00           C
ATOM    138  CA  THR   138      28.320  62.697   8.422  1.00 25.00           C
ATOM    139  CA  SER   139      31.917  62.125   9.508  1.00 25.00           C
ATOM    140  CA  GLY   140      34.737  62.731  12.004  1.00 25.00           C
ATOM    141  CA  ILE   141      38.335  61.684  11.938  1.00 25.00           C
ATOM    142  CA  ARG   142      37.823  58.344  13.664  1.00 25.00           C
ATOM    143  CA  GLU   143      35.626  55.281  14.407  1.00 25.00           C
ATOM    144  CA  LEU   144      33.278  52.442  13.301  1.00 25.00           C
ATOM    145  CA  ASN   145      31.580  49.092  12.705  1.00 25.00           C
ATOM    146  CA  VAL   146      29.879  45.712  13.054  1.00 25.00           C
ATOM    147  CA  ASN   147      30.498  42.227  14.366  1.00 25.00           C
ATOM    148  CA  ILE   148      29.160  39.263  16.322  1.00 25.00           C
ATOM    149  CA  ASP   149      29.865  36.357  18.671  1.00 25.00           C
ATOM    150  CA  VAL   150      30.621  32.860  19.925  1.00 25.00           C
ATOM    151  CA  VAL   151      33.434  30.330  19.647  1.00 25.00           C
ATOM    152  CA  CYS   152      31.672  28.015  22.166  1.00 25.00           C
ATOM    153  CA  ASP   153      34.004  27.339  25.092  1.00 25.00           C
ATOM    154  CA  LYS   154      32.200  25.023  27.527  1.00 25.00           C
ATOM    155  CA  LEU   155      28.574  24.375  26.480  1.00 25.00           C
TER
END
