
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS393_2
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS393_2.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        78 - 109         4.97    18.46
  LONGEST_CONTINUOUS_SEGMENT:    32        79 - 110         5.00    18.34
  LCS_AVERAGE:     18.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        84 - 103         1.86    18.22
  LONGEST_CONTINUOUS_SEGMENT:    20        86 - 105         1.88    18.20
  LCS_AVERAGE:      8.05

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    18.69
  LCS_AVERAGE:      4.95

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      3    4   16     1    3    3    4    4    9   10   10   14   17   19   20   32   34   37   41   46   50   52   55 
LCS_GDT     K       2     K       2      3    4   16     0    3    3    4    4    6    9   12   12   17   19   20   24   26   35   41   46   50   52   56 
LCS_GDT     F       3     F       3      3    4   16     0    3    3    4    6    9   10   12   14   20   24   28   32   34   38   42   46   50   52   56 
LCS_GDT     L       4     L       4      3    4   16     3    3    3    4    5    8   10   12   13   17   29   32   34   39   40   45   46   50   56   59 
LCS_GDT     T       5     T       5      3    6   23     3    3    4    5   11   16   21   23   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     T       6     T       6      3    6   23     3    6   11   13   14   15   21   23   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     N       7     N       7      4    6   23     3    4    5    8   11   16   21   23   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     F       8     F       8      4    6   23     3    4    6    8    9   10   12   15   18   26   28   36   40   42   46   53   57   62   64   66 
LCS_GDT     L       9     L       9      4    6   23     3    3    6    8    9   10   12   19   21   25   28   35   40   42   46   53   57   62   64   66 
LCS_GDT     K      10     K      10      4    6   23     3    4    6    7    9   10   12   14   16   23   28   30   32   35   46   53   57   62   64   66 
LCS_GDT     C      11     C      11      3    6   23     3    3    4    6    9   10   17   19   21   25   28   30   32   33   40   52   57   62   64   66 
LCS_GDT     S      12     S      12      3    6   23     3    3    5    8    9   10   12   15   21   25   28   30   32   33   33   43   55   62   64   66 
LCS_GDT     V      13     V      13      3    6   23     3    3    4    4    6    9   11   15   16   23   24   26   27   32   32   35   38   44   54   55 
LCS_GDT     K      14     K      14      3    6   23     3    3    4    5    6    9   12   15   16   23   24   26   27   32   32   43   54   61   64   66 
LCS_GDT     A      15     A      15      3    6   23     3    3    4    4    6    7    8   10   12   18   20   24   27   32   32   34   41   44   54   55 
LCS_GDT     C      16     C      16      4    6   23     3    3    5    6    7    7    9   13   16   18   21   24   27   32   33   53   57   62   64   66 
LCS_GDT     D      17     D      17      4    6   23     3    3    5    6    7    7    9   13   14   22   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     T      18     T      18      4    6   23     3    3    5    6    7    7    9   13   13   16   18   24   26   37   42   50   55   59   62   65 
LCS_GDT     S      19     S      19      4    6   23     1    3    4    6    7    7    9   13   21   24   30   36   40   42   45   53   56   61   64   65 
LCS_GDT     N      20     N      20      4    6   23     3    3    4    7    7   15   18   24   25   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     D      21     D      21      4    6   23     3    3    5    6    7    9   12   14   20   26   30   35   40   42   46   53   57   62   64   66 
LCS_GDT     N      22     N      22      4    6   23     3    3    4    6    7    9   10   13   16   23   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     F      23     F      23      3    7   23     0    3    4    5    7    9   12   20   25   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     P      24     P      24      3    7   23     2    3    5    7   13   17   20   24   25   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L      25     L      25      3    7   23     1    3    5    7    7    9   15   22   23   24   27   32   39   42   46   53   57   62   64   66 
LCS_GDT     Q      26     Q      26      4    7   23     3    3    5    6    7   10   12   15   18   20   25   27   29   35   38   43   52   62   64   66 
LCS_GDT     Y      27     Y      27      4    7   23     3    3    5    6    9   11   13   15   18   20   23   25   30   35   38   41   47   52   63   66 
LCS_GDT     D      28     D      28      4    7   23     4    4    5    6    9   11   11   14   16   18   22   25   30   35   38   41   46   50   52   56 
LCS_GDT     G      29     G      29      4    7   18     4    4    5    6    7    9    9   13   14   16   20   25   28   33   38   40   45   49   52   56 
LCS_GDT     S      30     S      30      4   12   18     4    4    5    9   13   13   13   15   16   19   21   23   26   31   38   40   44   48   52   56 
LCS_GDT     K      31     K      31      4   12   18     4    4    8    9   13   13   13   15   16   19   21   23   24   29   36   40   44   47   52   56 
LCS_GDT     C      32     C      32      4   12   18     3    4    8    9   13   13   13   15   16   19   21   23   26   30   38   40   44   48   60   65 
LCS_GDT     Q      33     Q      33      6   12   18     3    5    9    9   13   13   13   15   16   19   21   23   26   29   37   45   57   62   64   66 
LCS_GDT     L      34     L      34      6   12   18     3    5    9    9   13   13   13   15   16   23   29   31   37   40   46   53   57   62   64   66 
LCS_GDT     V      35     V      35      6   12   18     3    5    9    9   13   13   13   15   16   19   21   23   28   32   37   40   44   49   56   65 
LCS_GDT     Q      36     Q      36      6   12   18     3    6    9    9   13   13   13   15   16   19   22   25   30   35   38   41   46   50   52   56 
LCS_GDT     D      37     D      37      6   12   20     3    6    9    9   13   13   13   15   16   20   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     E      38     E      38      6   12   20     4    6    9    9   13   13   13   15   16   20   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     S      39     S      39      6   12   20     4    6    9    9   13   13   13   15   18   20   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     I      40     I      40      6   12   20     4    6    9    9   13   13   13   15   18   20   25   27   29   35   38   41   46   50   52   56 
LCS_GDT     E      41     E      41      6   12   30     4    6    6    9   13   14   17   19   22   25   28   30   32   33   38   41   46   50   52   56 
LCS_GDT     F      42     F      42      5   10   30     3    3    6    7    8    9   17   19   22   25   28   30   32   35   38   41   46   50   52   56 
LCS_GDT     N      43     N      43      3   10   30     3    3    5    6    7    9   10   12   15   19   24   28   30   33   38   41   46   50   52   56 
LCS_GDT     P      44     P      44     10   12   30     9    9    9   10   11   11   12   14   16   18   21   24   27   31   35   40   45   49   52   55 
LCS_GDT     E      45     E      45     10   12   30     9    9    9   10   11   11   12   14   16   18   21   24   28   31   34   35   37   41   45   53 
LCS_GDT     F      46     F      46     10   12   30     9    9    9   10   11   11   12   14   15   18   21   24   27   31   34   35   37   39   45   53 
LCS_GDT     L      47     L      47     10   12   30     9    9    9   10   11   11   12   14   16   18   24   28   30   33   38   41   46   50   52   56 
LCS_GDT     L      48     L      48     10   12   30     9    9    9   10   11   11   12   14   21   24   26   28   32   33   38   41   46   50   52   56 
LCS_GDT     N      49     N      49     10   12   30     9    9    9   10   11   11   12   16   21   24   28   30   32   33   34   40   46   50   52   56 
LCS_GDT     I      50     I      50     10   12   30     9    9    9   10   11   11   12   17   22   25   28   30   32   33   38   41   46   50   52   56 
LCS_GDT     V      51     V      51     10   12   30     9    9    9   10   11   15   17   19   22   25   28   30   32   35   38   41   46   50   52   56 
LCS_GDT     D      52     D      52     10   16   30     9    9    9   10   14   15   17   19   22   25   28   30   32   35   38   41   46   50   52   56 
LCS_GDT     R      53     R      53     10   16   30     3    4    7   13   14   15   17   19   22   24   28   30   32   35   38   41   46   50   52   56 
LCS_GDT     V      54     V      54      5   16   30     3    4    6    9   14   15   17   19   22   24   28   30   32   35   38   41   46   50   52   56 
LCS_GDT     D      55     D      55      5   16   30     3    4    5    7   10   15   17   19   21   24   26   28   32   35   38   41   46   50   52   56 
LCS_GDT     W      56     W      56     12   16   30    11   11   11   13   14   15   17   19   22   25   28   30   32   35   38   41   46   50   52   56 
LCS_GDT     P      57     P      57     12   16   30    11   11   11   13   14   15   17   19   22   25   28   30   32   35   38   41   46   50   52   56 
LCS_GDT     A      58     A      58     12   16   30    11   11   11   13   14   15   17   19   22   25   28   30   32   35   38   41   46   50   62   65 
LCS_GDT     V      59     V      59     12   16   30    11   11   11   13   14   15   17   19   26   27   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L      60     L      60     12   16   30    11   11   11   13   14   15   17   19   22   26   29   36   40   42   46   53   57   62   64   66 
LCS_GDT     T      61     T      61     12   16   30    11   11   11   13   14   15   17   19   22   25   28   30   32   35   38   41   47   62   64   66 
LCS_GDT     V      62     V      62     12   16   30    11   11   11   13   14   15   17   19   22   25   28   31   37   40   46   53   57   62   64   66 
LCS_GDT     A      63     A      63     12   16   30    11   11   11   13   14   15   17   19   22   25   28   31   37   40   46   53   57   62   64   66 
LCS_GDT     A      64     A      64     12   16   30    11   11   11   13   14   15   17   19   22   25   28   30   32   33   36   44   57   62   64   66 
LCS_GDT     E      65     E      65     12   16   30    11   11   11   13   14   15   17   19   22   25   28   30   32   33   34   39   41   45   52   56 
LCS_GDT     L      66     L      66     12   16   30    11   11   11   13   14   15   17   19   22   25   28   30   32   33   34   36   40   45   49   56 
LCS_GDT     G      67     G      67     12   16   30     3    4   10   13   14   15   17   19   22   25   28   30   32   33   34   36   40   45   48   56 
LCS_GDT     N      68     N      68      4   13   30     3    4    4    5    8   10   13   18   22   25   28   30   32   33   34   36   40   45   48   56 
LCS_GDT     N      69     N      69      4    8   30     3    4    4    5    8   10   12   18   22   25   28   30   32   33   34   36   40   45   53   63 
LCS_GDT     A      70     A      70      4    8   30     3    4    4    6    8   10   12   16   19   23   26   28   30   33   34   39   40   45   55   66 
LCS_GDT     L      71     L      71      5    8   27     3    4    5    6    8   10   12   15   17   19   20   22   24   26   32   35   39   43   49   60 
LCS_GDT     P      72     P      72      5    8   26     4    4    5    6    8   10   12   15   17   19   20   22   24   26   28   33   39   47   56   66 
LCS_GDT     P      73     P      73      5    8   26     4    4    5    6    8   10   11   12   13   15   18   22   24   26   28   33   39   43   47   58 
LCS_GDT     T      74     T      74      5    7   26     4    4    5    5    8   10   12   15   17   19   20   22   24   25   28   31   35   41   46   51 
LCS_GDT     K      75     K      75      5    9   26     4    4    5    7    8    9   10   15   17   19   20   21   23   25   26   26   29   32   35   37 
LCS_GDT     P      76     P      76      4    9   26     3    3    4    4    8   10   11   12   16   19   20   21   23   25   27   30   35   38   44   49 
LCS_GDT     S      77     S      77      4    9   26     3    3    4    7    8   10   11   15   17   19   20   22   24   25   27   31   37   42   45   56 
LCS_GDT     F      78     F      78      4    9   32     3    4    5    7    8    9   12   15   17   19   20   24   26   30   41   52   57   62   64   66 
LCS_GDT     P      79     P      79      4    9   32     3    4    5    7    8    9   10   15   17   19   20   24   38   42   46   53   57   62   64   66 
LCS_GDT     S      80     S      80      4    9   32     3    4    5    7    8   11   12   15   19   26   29   35   40   42   46   53   57   62   64   66 
LCS_GDT     S      81     S      81      4    9   32     3    4    5    7    9   11   15   19   25   27   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     I      82     I      82      4    9   32     3    4    5    7    9   11   15   21   26   27   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     Q      83     Q      83      4   17   32     3    5    5    7   11   16   20   23   26   27   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     E      84     E      84      4   20   32     3    6   12   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L      85     L      85      4   20   32     3    5    5    7   13   17   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     T      86     T      86     16   20   32    14   15   15   16   19   20   21   24   26   27   30   36   40   42   45   53   57   62   64   66 
LCS_GDT     D      87     D      87     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     D      88     D      88     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     D      89     D      89     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     M      90     M      90     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     A      91     A      91     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     I      92     I      92     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L      93     L      93     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     N      94     N      94     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     D      95     D      95     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L      96     L      96     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     H      97     H      97     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     T      98     T      98     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L      99     L      99     16   20   32    14   15   15   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L     100     L     100     16   20   32     4   15   15   16   19   20   21   24   25   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     L     101     L     101     16   20   32     3    6   15   16   19   20   21   24   25   28   30   36   38   42   45   53   57   62   64   66 
LCS_GDT     Q     102     Q     102      5   20   32     4    6    8   15   19   20   21   24   25   28   30   33   37   42   44   51   56   62   64   66 
LCS_GDT     T     103     T     103      5   20   32     4    6   11   16   19   20   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     S     104     S     104      4   20   32     3    4    5    8   11   14   19   23   26   28   30   32   37   39   44   53   57   62   64   66 
LCS_GDT     I     105     I     105      4   20   32     4    6   10   14   19   20   21   24   26   28   30   34   40   42   46   53   57   62   64   66 
LCS_GDT     A     106     A     106      4    5   32     3    4    4    8   13   18   21   24   26   28   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     E     107     E     107      4    5   32     1    4    6    8   14   17   19   22   25   27   30   36   40   42   46   53   57   62   64   66 
LCS_GDT     G     108     G     108      3    5   32     3    3    6    7    9   10   15   19   22   24   29   35   40   42   46   52   57   62   64   66 
LCS_GDT     E     109     E     109      3    5   32     3    3    6    7    9   10   12   15   18   23   25   29   39   42   46   53   57   62   64   66 
LCS_GDT     M     110     M     110      3    6   32     3    3    6    7    9   10   10   12   18   20   25   27   30   35   38   53   57   62   64   66 
LCS_GDT     K     111     K     111      3    6   28     3    3    5    7    9   10   10   12   14   20   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     C     112     C     112      3    6   19     3    3    4    5    6    6   10   12   17   20   25   27   29   31   34   40   46   50   52   59 
LCS_GDT     R     113     R     113      3    6   19     3    3    4    5    6    7   10   12   18   20   25   27   29   31   34   37   46   50   52   54 
LCS_GDT     N     114     N     114      4    6   19     1    4    4    5    6    7   10   13   16   19   22   24   29   31   34   36   45   48   52   54 
LCS_GDT     C     115     C     115      4    6   19     3    4    4    5    9   10   14   16   19   21   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     G     116     G     116      4    5   19     3    4    4    4    5    7   11   14   18   20   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     H     117     H     117      4    5   19     3    4    4    4    6    7   11   15   18   20   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     I     118     I     118      4    5   19     3    3    4    6    8    9   10   13   14   20   25   27   29   35   38   40   46   50   52   56 
LCS_GDT     Y     119     Y     119      4    5   19     0    3    6    7    9   10   12   15   18   20   25   27   30   35   38   41   46   50   52   56 
LCS_GDT     Y     120     Y     120      4    5   19     2    4    6    7    9   10   12   15   18   20   25   27   30   35   38   41   52   62   64   66 
LCS_GDT     I     121     I     121      4    5   19     2    5    6    7    9   10   11   15   17   20   25   27   30   41   46   53   57   62   64   66 
LCS_GDT     K     122     K     122      4    5   19     2    4    5    5    6    9   11   14   16   19   21   25   28   31   44   53   57   62   64   66 
LCS_GDT     N     123     N     123      4    5   13     0    4    5    5    6    9   10   10   14   17   21   24   27   41   46   53   57   62   64   66 
LCS_GDT     G     124     G     124      4    6   13     3    3    5    7    7    9   10   10   11   11   14   16   27   31   32   35   39   43   51   62 
LCS_GDT     I     125     I     125      4    8   13     3    3    5    6    6    9   10   10   11   11   12   14   19   24   29   33   36   38   41   45 
LCS_GDT     P     126     P     126      4    8   13     3    3    5    6    6    9   10   10   11   11   13   13   14   19   21   23   26   30   33   43 
LCS_GDT     N     127     N     127      4    8   13     3    3    5    6    7    9   10   10   11   11   13   14   16   23   27   32   36   37   42   50 
LCS_GDT     L     128     L     128      5    8   13     4    4    5    7    8    9   10   10   11   11   13   14   16   21   23   30   33   36   41   45 
LCS_GDT     L     129     L     129      5    8   13     4    4    5    7    8    9   10   10   11   11   15   19   21   23   28   33   37   45   48   50 
LCS_GDT     L     130     L     130      5    8   13     4    4    5    7    8    9   10   10   11   11   13   13   17   21   25   27   32   35   39   47 
LCS_GDT     P     131     P     131      5    8   13     4    4    5    6    8    9   10   10   11   15   17   19   21   23   28   33   38   45   48   52 
LCS_GDT     P     132     P     132      5    8   13     4    4    5    7    8    9   11   11   12   15   17   19   23   26   29   35   42   46   51   54 
LCS_GDT     H     133     H     133      5    8   13     4    4    5    7    9    9    9   10   13   14   16   19   21   23   25   27   38   45   49   52 
LCS_GDT     L     134     L     134      5    8   13     4    4    5    7    8    8    9    9    9   10   11   15   16   17   19   25   26   30   32   36 
LCS_GDT     V     135     V     135      5    8   13     0    3    5    7    8    8    9    9    9   13   14   15   16   17   18   22   24   24   25   26 
LCS_AVERAGE  LCS_A:  10.53  (   4.95    8.05   18.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     15     16     19     20     21     24     26     28     30     36     40     42     46     53     57     62     64     66 
GDT PERCENT_CA  10.37  11.11  11.11  11.85  14.07  14.81  15.56  17.78  19.26  20.74  22.22  26.67  29.63  31.11  34.07  39.26  42.22  45.93  47.41  48.89
GDT RMS_LOCAL    0.17   0.32   0.32   0.66   1.50   1.70   1.96   2.42   2.94   3.27   3.62   4.45   4.83   4.95   5.72   6.15   6.55   6.86   6.91   7.32
GDT RMS_ALL_CA  18.72  18.73  18.73  18.69  18.29  18.21  18.21  18.12  19.22  18.09  18.28  18.18  18.30  18.24  18.11  17.79  17.84  17.83  17.85  17.78

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          7.536
LGA    K       2      K       2          9.180
LGA    F       3      F       3          6.874
LGA    L       4      L       4          6.715
LGA    T       5      T       5          5.901
LGA    T       6      T       6          7.137
LGA    N       7      N       7          7.082
LGA    F       8      F       8          9.181
LGA    L       9      L       9          9.992
LGA    K      10      K      10         12.950
LGA    C      11      C      11         13.869
LGA    S      12      S      12         15.613
LGA    V      13      V      13         19.208
LGA    K      14      K      14         14.843
LGA    A      15      A      15         15.919
LGA    C      16      C      16         12.608
LGA    D      17      D      17          7.410
LGA    T      18      T      18          9.941
LGA    S      19      S      19          7.488
LGA    N      20      N      20          3.782
LGA    D      21      D      21          7.684
LGA    N      22      N      22          8.578
LGA    F      23      F      23          5.959
LGA    P      24      P      24          3.876
LGA    L      25      L      25          7.780
LGA    Q      26      Q      26         13.222
LGA    Y      27      Y      27         15.402
LGA    D      28      D      28         21.519
LGA    G      29      G      29         23.886
LGA    S      30      S      30         26.564
LGA    K      31      K      31         22.716
LGA    C      32      C      32         16.064
LGA    Q      33      Q      33         12.743
LGA    L      34      L      34          9.099
LGA    V      35      V      35         12.287
LGA    Q      36      Q      36         15.820
LGA    D      37      D      37         20.317
LGA    E      38      E      38         26.545
LGA    S      39      S      39         31.899
LGA    I      40      I      40         29.792
LGA    E      41      E      41         35.075
LGA    F      42      F      42         31.761
LGA    N      43      N      43         33.204
LGA    P      44      P      44         29.255
LGA    E      45      E      45         31.165
LGA    F      46      F      46         25.434
LGA    L      47      L      47         21.671
LGA    L      48      L      48         25.234
LGA    N      49      N      49         25.206
LGA    I      50      I      50         18.836
LGA    V      51      V      51         19.369
LGA    D      52      D      52         25.012
LGA    R      53      R      53         26.312
LGA    V      54      V      54         20.054
LGA    D      55      D      55         20.995
LGA    W      56      W      56         14.634
LGA    P      57      P      57         15.425
LGA    A      58      A      58         12.138
LGA    V      59      V      59          7.890
LGA    L      60      L      60          9.089
LGA    T      61      T      61         12.810
LGA    V      62      V      62         10.927
LGA    A      63      A      63         10.495
LGA    A      64      A      64         13.952
LGA    E      65      E      65         17.846
LGA    L      66      L      66         18.011
LGA    G      67      G      67         19.877
LGA    N      68      N      68         20.142
LGA    N      69      N      69         16.707
LGA    A      70      A      70         16.628
LGA    L      71      L      71         16.622
LGA    P      72      P      72         16.101
LGA    P      73      P      73         17.426
LGA    T      74      T      74         18.340
LGA    K      75      K      75         21.776
LGA    P      76      P      76         19.833
LGA    S      77      S      77         17.714
LGA    F      78      F      78         13.618
LGA    P      79      P      79         12.221
LGA    S      80      S      80         11.290
LGA    S      81      S      81         10.528
LGA    I      82      I      82          9.088
LGA    Q      83      Q      83          7.448
LGA    E      84      E      84          0.751
LGA    L      85      L      85          3.981
LGA    T      86      T      86          3.290
LGA    D      87      D      87          2.803
LGA    D      88      D      88          2.172
LGA    D      89      D      89          2.320
LGA    M      90      M      90          2.071
LGA    A      91      A      91          1.443
LGA    I      92      I      92          1.193
LGA    L      93      L      93          1.442
LGA    N      94      N      94          1.119
LGA    D      95      D      95          0.754
LGA    L      96      L      96          1.083
LGA    H      97      H      97          0.788
LGA    T      98      T      98          1.402
LGA    L      99      L      99          1.978
LGA    L     100      L     100          2.992
LGA    L     101      L     101          3.958
LGA    Q     102      Q     102          3.576
LGA    T     103      T     103          2.448
LGA    S     104      S     104          5.432
LGA    I     105      I     105          2.732
LGA    A     106      A     106          3.256
LGA    E     107      E     107          5.593
LGA    G     108      G     108          9.928
LGA    E     109      E     109         11.383
LGA    M     110      M     110         12.780
LGA    K     111      K     111         18.243
LGA    C     112      C     112         18.775
LGA    R     113      R     113         24.144
LGA    N     114      N     114         29.400
LGA    C     115      C     115         31.732
LGA    G     116      G     116         33.706
LGA    H     117      H     117         30.106
LGA    I     118      I     118         25.433
LGA    Y     119      Y     119         19.913
LGA    Y     120      Y     120         14.827
LGA    I     121      I     121         12.319
LGA    K     122      K     122         13.900
LGA    N     123      N     123         12.863
LGA    G     124      G     124         13.648
LGA    I     125      I     125         19.055
LGA    P     126      P     126         23.470
LGA    N     127      N     127         23.215
LGA    L     128      L     128         27.277
LGA    L     129      L     129         30.636
LGA    L     130      L     130         30.840
LGA    P     131      P     131         35.272
LGA    P     132      P     132         38.141
LGA    H     133      H     133         37.325
LGA    L     134      L     134         36.972
LGA    V     135      V     135         38.680

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     24    2.42    20.000    16.192     0.954

LGA_LOCAL      RMSD =  2.417  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.223  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 15.702  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.163055 * X  +   0.875861 * Y  +   0.454182 * Z  +  24.668999
  Y_new =  -0.965396 * X  +   0.046674 * Y  +   0.256577 * Z  +  -1.360245
  Z_new =   0.203527 * X  +  -0.480302 * Y  +   0.853163 * Z  +   9.596283 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.512743    2.628849  [ DEG:   -29.3780    150.6220 ]
  Theta =  -0.204959   -2.936634  [ DEG:   -11.7433   -168.2567 ]
  Phi   =  -1.403476    1.738117  [ DEG:   -80.4133     99.5867 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS393_2                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS393_2.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   24   2.42  16.192    15.70
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS393_2
PFRMAT TS
TARGET T0319
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      13.712  11.819  16.622  1.00 25.00           C
ATOM      2  CA  LYS     2      14.631   9.284  13.996  1.00 25.00           C
ATOM      3  CA  PHE     3      15.723   6.230  12.041  1.00 25.00           C
ATOM      4  CA  LEU     4      17.240   3.067  10.647  1.00 25.00           C
ATOM      5  CA  THR     5      18.985  -0.350  10.778  1.00 25.00           C
ATOM      6  CA  THR     6      19.799  -0.688   7.021  1.00 25.00           C
ATOM      7  CA  ASN     7      18.556  -4.222   6.162  1.00 25.00           C
ATOM      8  CA  PHE     8      20.137  -5.249   9.499  1.00 25.00           C
ATOM      9  CA  LEU     9      17.015  -6.943  10.799  1.00 25.00           C
ATOM     10  CA  LYS    10      17.093  -9.533  13.592  1.00 25.00           C
ATOM     11  CA  CYS    11      15.037  -7.048  15.655  1.00 25.00           C
ATOM     12  CA  SER    12      12.717  -9.666  17.138  1.00 25.00           C
ATOM     13  CA  VAL    13      12.569 -11.649  13.853  1.00 25.00           C
ATOM     14  CA  LYS    14       8.864 -10.726  13.895  1.00 25.00           C
ATOM     15  CA  ALA    15       9.789  -8.965  10.656  1.00 25.00           C
ATOM     16  CA  CYS    16      11.224  -5.626  11.606  1.00 25.00           C
ATOM     17  CA  ASP    17       7.886  -4.352  12.796  1.00 25.00           C
ATOM     18  CA  THR    18       7.396  -1.443  10.390  1.00 25.00           C
ATOM     19  CA  SER    19       7.665  -1.963   6.631  1.00 25.00           C
ATOM     20  CA  ASN    20       7.673  -5.715   6.806  1.00 25.00           C
ATOM     21  CA  ASP    21      10.696  -7.871   5.803  1.00 25.00           C
ATOM     22  CA  ASN    22      12.599  -4.548   5.903  1.00 25.00           C
ATOM     23  CA  PHE    23      14.332  -1.340   7.127  1.00 25.00           C
ATOM     24  CA  PRO    24      14.103  -1.561  10.890  1.00 25.00           C
ATOM     25  CA  LEU    25      13.895  -0.171  14.484  1.00 25.00           C
ATOM     26  CA  GLN    26      17.054  -2.291  14.971  1.00 25.00           C
ATOM     27  CA  TYR    27      19.695  -4.911  14.515  1.00 25.00           C
ATOM     28  CA  ASP    28      20.916  -5.091  18.158  1.00 25.00           C
ATOM     29  CA  GLY    29      23.991  -6.751  19.656  1.00 25.00           C
ATOM     30  CA  SER    30      25.135  -7.836  16.194  1.00 25.00           C
ATOM     31  CA  LYS    31      25.162  -4.641  14.238  1.00 25.00           C
ATOM     32  CA  CYS    32      24.063  -2.343  11.437  1.00 25.00           C
ATOM     33  CA  GLN    33      23.808   1.466  11.113  1.00 25.00           C
ATOM     34  CA  LEU    34      23.728   2.972   7.602  1.00 25.00           C
ATOM     35  CA  VAL    35      20.415   4.397   6.223  1.00 25.00           C
ATOM     36  CA  GLN    36      18.184   6.820   4.305  1.00 25.00           C
ATOM     37  CA  ASP    37      18.073  10.091   2.363  1.00 25.00           C
ATOM     38  CA  GLU    38      15.445  10.221  -0.354  1.00 25.00           C
ATOM     39  CA  SER    39      15.932  12.549  -3.341  1.00 25.00           C
ATOM     40  CA  ILE    40      19.254  10.785  -3.799  1.00 25.00           C
ATOM     41  CA  GLU    41      17.725   9.117  -6.878  1.00 25.00           C
ATOM     42  CA  PHE    42      20.956   7.029  -6.684  1.00 25.00           C
ATOM     43  CA  ASN    43      20.193   3.290  -7.100  1.00 25.00           C
ATOM     44  CA  PRO    44      19.094   1.154  -4.138  1.00 25.00           C
ATOM     45  CA  GLU    45      19.032   4.556  -2.380  1.00 25.00           C
ATOM     46  CA  PHE    46      19.837   2.870   0.963  1.00 25.00           C
ATOM     47  CA  LEU    47      22.754   0.993  -0.659  1.00 25.00           C
ATOM     48  CA  LEU    48      24.072   4.269  -2.140  1.00 25.00           C
ATOM     49  CA  ASN    49      23.832   5.948   1.293  1.00 25.00           C
ATOM     50  CA  ILE    50      25.733   3.027   2.881  1.00 25.00           C
ATOM     51  CA  VAL    51      28.449   3.302   0.194  1.00 25.00           C
ATOM     52  CA  ASP    52      28.739   7.065   0.838  1.00 25.00           C
ATOM     53  CA  ARG    53      31.079   9.063   3.139  1.00 25.00           C
ATOM     54  CA  VAL    54      30.418   6.779   6.109  1.00 25.00           C
ATOM     55  CA  ASP    55      32.318   4.279   3.950  1.00 25.00           C
ATOM     56  CA  TRP    56      30.330   1.192   4.825  1.00 25.00           C
ATOM     57  CA  PRO    57      31.668  -2.217   5.945  1.00 25.00           C
ATOM     58  CA  ALA    58      28.186  -3.201   7.198  1.00 25.00           C
ATOM     59  CA  VAL    59      26.655  -2.137   3.852  1.00 25.00           C
ATOM     60  CA  LEU    60      29.267  -4.211   1.971  1.00 25.00           C
ATOM     61  CA  THR    61      28.489  -7.242   4.179  1.00 25.00           C
ATOM     62  CA  VAL    62      24.745  -6.803   3.504  1.00 25.00           C
ATOM     63  CA  ALA    63      25.422  -6.614  -0.261  1.00 25.00           C
ATOM     64  CA  ALA    64      27.528  -9.806  -0.068  1.00 25.00           C
ATOM     65  CA  GLU    65      24.718 -11.576   1.839  1.00 25.00           C
ATOM     66  CA  LEU    66      22.185 -10.456  -0.807  1.00 25.00           C
ATOM     67  CA  GLY    67      22.221 -12.391  -4.034  1.00 25.00           C
ATOM     68  CA  ASN    68      24.362 -14.886  -5.920  1.00 25.00           C
ATOM     69  CA  ASN    69      26.992 -13.637  -8.315  1.00 25.00           C
ATOM     70  CA  ALA    70      29.190 -16.161  -6.424  1.00 25.00           C
ATOM     71  CA  LEU    71      27.198 -18.920  -4.650  1.00 25.00           C
ATOM     72  CA  PRO    72      28.812 -22.359  -4.850  1.00 25.00           C
ATOM     73  CA  PRO    73      27.888 -25.504  -2.865  1.00 25.00           C
ATOM     74  CA  THR    74      30.769 -27.311  -4.586  1.00 25.00           C
ATOM     75  CA  LYS    75      34.512 -27.069  -5.010  1.00 25.00           C
ATOM     76  CA  PRO    76      35.275 -28.510  -1.518  1.00 25.00           C
ATOM     77  CA  SER    77      37.872 -28.566   1.252  1.00 25.00           C
ATOM     78  CA  PHE    78      36.565 -25.784   3.498  1.00 25.00           C
ATOM     79  CA  PRO    79      35.671 -28.526   6.057  1.00 25.00           C
ATOM     80  CA  SER    80      33.170 -28.322   8.924  1.00 25.00           C
ATOM     81  CA  SER    81      35.042 -25.546  10.692  1.00 25.00           C
ATOM     82  CA  ILE    82      34.970 -23.102  13.587  1.00 25.00           C
ATOM     83  CA  GLN    83      38.731 -22.852  13.171  1.00 25.00           C
ATOM     84  CA  GLU    84      38.691 -19.451  14.824  1.00 25.00           C
ATOM     85  CA  LEU    85      39.988 -17.957  11.563  1.00 25.00           C
ATOM     86  CA  THR    86      36.984 -15.826  10.730  1.00 25.00           C
ATOM     87  CA  ASP    87      39.234 -12.742  10.422  1.00 25.00           C
ATOM     88  CA  ASP    88      36.963 -11.328   7.681  1.00 25.00           C
ATOM     89  CA  ASP    89      33.890 -11.921   9.889  1.00 25.00           C
ATOM     90  CA  MET    90      35.616 -10.145  12.810  1.00 25.00           C
ATOM     91  CA  ALA    91      36.477  -7.186  10.536  1.00 25.00           C
ATOM     92  CA  ILE    92      32.840  -7.006   9.352  1.00 25.00           C
ATOM     93  CA  LEU    93      31.629  -7.043  12.985  1.00 25.00           C
ATOM     94  CA  ASN    94      34.075  -4.228  13.854  1.00 25.00           C
ATOM     95  CA  ASP    95      32.824  -2.185  10.866  1.00 25.00           C
ATOM     96  CA  LEU    96      29.200  -2.727  11.982  1.00 25.00           C
ATOM     97  CA  HIS    97      30.098  -1.599  15.530  1.00 25.00           C
ATOM     98  CA  THR    98      31.797   1.535  14.130  1.00 25.00           C
ATOM     99  CA  LEU    99      28.697   2.302  12.015  1.00 25.00           C
ATOM    100  CA  LEU   100      26.463   1.885  15.098  1.00 25.00           C
ATOM    101  CA  LEU   101      28.727   4.246  17.089  1.00 25.00           C
ATOM    102  CA  GLN   102      28.563   6.826  14.263  1.00 25.00           C
ATOM    103  CA  THR   103      25.574   6.663  11.839  1.00 25.00           C
ATOM    104  CA  SER   104      22.452   7.499   9.858  1.00 25.00           C
ATOM    105  CA  ILE   105      19.477   9.476  11.272  1.00 25.00           C
ATOM    106  CA  ALA   106      20.417   9.726  14.992  1.00 25.00           C
ATOM    107  CA  GLU   107      18.563  11.083  17.982  1.00 25.00           C
ATOM    108  CA  GLY   108      17.777   7.421  18.788  1.00 25.00           C
ATOM    109  CA  GLU   109      18.369   4.795  16.147  1.00 25.00           C
ATOM    110  CA  MET   110      20.779   2.565  14.261  1.00 25.00           C
ATOM    111  CA  LYS   111      21.835  -0.863  15.575  1.00 25.00           C
ATOM    112  CA  CYS   112      19.848  -0.126  18.772  1.00 25.00           C
ATOM    113  CA  ARG   113      20.849  -1.640  22.145  1.00 25.00           C
ATOM    114  CA  ASN   114      22.181  -2.917  25.476  1.00 25.00           C
ATOM    115  CA  CYS   115      25.279  -3.641  23.361  1.00 25.00           C
ATOM    116  CA  GLY   116      28.890  -2.363  23.850  1.00 25.00           C
ATOM    117  CA  HIS   117      28.889  -0.611  20.455  1.00 25.00           C
ATOM    118  CA  ILE   118      25.681  -1.774  18.732  1.00 25.00           C
ATOM    119  CA  TYR   119      24.551   1.839  19.104  1.00 25.00           C
ATOM    120  CA  TYR   120      22.693   5.079  18.383  1.00 25.00           C
ATOM    121  CA  ILE   121      25.165   7.926  18.550  1.00 25.00           C
ATOM    122  CA  LYS   122      27.297   9.730  21.068  1.00 25.00           C
ATOM    123  CA  ASN   123      30.114  11.693  22.812  1.00 25.00           C
ATOM    124  CA  GLY   124      30.129  14.001  25.783  1.00 25.00           C
ATOM    125  CA  ILE   125      32.263  17.139  25.595  1.00 25.00           C
ATOM    126  CA  PRO   126      30.812  19.702  28.025  1.00 25.00           C
ATOM    127  CA  ASN   127      27.408  21.060  27.302  1.00 25.00           C
ATOM    128  CA  LEU   128      28.308  23.339  24.425  1.00 25.00           C
ATOM    129  CA  LEU   129      31.138  24.227  22.080  1.00 25.00           C
ATOM    130  CA  LEU   130      30.455  26.452  19.033  1.00 25.00           C
ATOM    131  CA  PRO   131      32.575  25.805  15.956  1.00 25.00           C
ATOM    132  CA  PRO   132      32.893  26.877  12.321  1.00 25.00           C
ATOM    133  CA  HIS   133      29.156  27.099  12.110  1.00 25.00           C
ATOM    134  CA  LEU   134      26.428  28.795  14.057  1.00 25.00           C
ATOM    135  CA  VAL   135      23.642  27.646  11.806  1.00 25.00           C
TER
END
