
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS393_3
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS393_3.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        83 - 110         4.80    19.11
  LCS_AVERAGE:     16.07

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        86 - 104         1.66    17.92
  LCS_AVERAGE:      7.23

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    18.18
  LCS_AVERAGE:      5.07

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      4    5   15     3    4    5    5    6    7    8   12   16   18   24   25   29   35   38   45   49   55   59   66 
LCS_GDT     K       2     K       2      4    5   15     3    4    5    5    5    7    9   12   15   19   24   25   29   35   38   45   49   55   59   66 
LCS_GDT     F       3     F       3      4    5   21     3    4    5    5    5    6   10   12   14   19   24   27   30   35   43   48   52   55   59   66 
LCS_GDT     L       4     L       4      4    5   21     3    4    7    9   13   17   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     T       5     T       5      3    5   21     3    3    5    6    9    9   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     T       6     T       6      4    5   21     3    3    5    5    7   12   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     N       7     N       7      4    5   21     3   12   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     F       8     F       8      4    5   21     3   12   16   17   17   19   21   22   24   27   30   34   38   43   48   50   55   59   63   66 
LCS_GDT     L       9     L       9      4    5   21     3    3    4    5   12   14   14   17   22   26   30   31   36   38   46   49   54   59   63   66 
LCS_GDT     K      10     K      10      4    5   21     3    3    4    5    9   10   10   14   19   21   22   26   33   35   41   43   51   55   61   66 
LCS_GDT     C      11     C      11      4    6   21     3    3    5    6    9   12   13   16   19   21   35   37   40   43   48   50   55   59   63   66 
LCS_GDT     S      12     S      12      4    6   21     3    3    4    5    7   10   10   14   19   21   25   29   35   43   46   49   51   59   63   66 
LCS_GDT     V      13     V      13      4    6   21     3    3    5    6    9   10   13   16   19   21   22   24   28   35   46   49   51   56   62   66 
LCS_GDT     K      14     K      14      3    6   21     3    3    5    6    9   10   11   16   19   21   22   24   28   35   41   41   43   54   56   59 
LCS_GDT     A      15     A      15      5    9   21     3    4    5    8   10   12   13   15   16   21   22   24   27   35   41   41   45   52   62   65 
LCS_GDT     C      16     C      16      7    9   21     4    5    7    8   10   12   13   16   19   21   22   24   28   35   41   51   55   59   63   66 
LCS_GDT     D      17     D      17      7    9   21     4    4    7    8   10   12   13   16   21   30   35   37   40   43   48   51   55   59   63   66 
LCS_GDT     T      18     T      18      7    9   21     4    5    7    8   10   12   13   15   16   18   20   25   29   34   41   49   54   59   63   66 
LCS_GDT     S      19     S      19      7    9   21     4    5    7    8   10   12   13   15   16   19   35   37   41   45   48   51   55   59   63   66 
LCS_GDT     N      20     N      20      7    9   21     3    5    7    8   10   12   13   20   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      21     D      21      7   10   21     4    5    7    8   10   17   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     N      22     N      22      7   10   21     4    5    7    8   10   15   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     F      23     F      23      6   10   21     4    4    6    8   10   15   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     P      24     P      24      6   10   21     3    4    6    8    9    9   13   21   25   30   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     L      25     L      25      6   10   18     4    4    6    8    9   11   17   21   26   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     Q      26     Q      26      6   10   18     4    4    6    6    9    9   13   19   26   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     Y      27     Y      27      5   10   18     3    4    6    8    9    9   12   21   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      28     D      28      5   10   18     3    4    6    8    9    9   11   12   25   32   35   40   42   45   48   51   55   59   63   66 
LCS_GDT     G      29     G      29      3   10   17     3    3    3    8    9    9   12   20   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     S      30     S      30      3   10   17     3    3    4    7    8   10   12   13   14   16   19   21   26   32   39   49   55   59   63   66 
LCS_GDT     K      31     K      31      3   10   17     3    3    5    8    8   10   12   13   14   18   20   21   21   23   28   30   37   41   50   63 
LCS_GDT     C      32     C      32      4   10   17     3    3    4    8    8   10   12   13   14   16   18   18   21   21   27   34   43   47   53   60 
LCS_GDT     Q      33     Q      33      4   10   17     3    3    4    5    8    9   12   12   14   16   18   18   21   24   29   34   37   39   43   53 
LCS_GDT     L      34     L      34      4   10   17     3    3    5    8    8   10   12   13   14   16   18   19   21   24   28   34   37   39   42   49 
LCS_GDT     V      35     V      35      4   10   17     3    4    5    8    8   10   12   13   14   16   18   19   21   25   28   32   37   39   43   47 
LCS_GDT     Q      36     Q      36      4   10   17     3    4    4    8    8   10   12   13   14   16   18   19   25   26   28   30   37   38   41   47 
LCS_GDT     D      37     D      37      4   10   18     3    4    5    8    8   10   12   13   14   16   19   23   25   26   28   32   37   39   40   47 
LCS_GDT     E      38     E      38      4   10   18     3    4    5    8    8   10   12   13   14   16   19   23   25   26   28   29   33   35   39   47 
LCS_GDT     S      39     S      39      3   10   18     3    3    4    7    8   10   12   13   14   16   18   23   25   26   28   29   33   35   39   47 
LCS_GDT     I      40     I      40      3   10   18     3    3    4    7    7   10   12   13   14   16   19   23   25   26   28   29   33   38   41   47 
LCS_GDT     E      41     E      41      4    5   19     3    4    4    5    6    8   11   13   14   16   19   23   25   26   28   29   33   38   39   47 
LCS_GDT     F      42     F      42      4    5   19     3    4    4    6    7    9   10   13   14   16   18   21   25   26   28   29   33   38   40   47 
LCS_GDT     N      43     N      43      4   12   21     3    4    4    6   10   11   11   13   16   16   19   23   25   26   28   29   34   41   45   51 
LCS_GDT     P      44     P      44     11   12   24    10   10   11   11   11   11   12   14   15   16   19   23   25   26   31   35   40   48   50   58 
LCS_GDT     E      45     E      45     11   12   24    10   10   11   11   11   11   12   14   16   16   21   24   28   29   35   41   46   51   59   63 
LCS_GDT     F      46     F      46     11   12   24    10   10   11   11   11   11   12   14   17   20   22   27   33   35   38   45   51   55   59   66 
LCS_GDT     L      47     L      47     11   12   24    10   10   11   11   11   11   12   14   16   16   22   25   31   33   38   42   47   54   59   66 
LCS_GDT     L      48     L      48     11   12   24    10   10   11   11   11   11   12   14   16   16   21   24   28   29   34   38   47   51   59   63 
LCS_GDT     N      49     N      49     11   12   24    10   10   11   16   17   19   21   23   24   28   30   37   41   44   47   51   55   59   63   66 
LCS_GDT     I      50     I      50     11   12   24    10   10   11   12   17   18   21   23   26   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     V      51     V      51     11   12   24    10   10   11   11   11   20   21   23   27   31   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      52     D      52     11   12   24    10   10   11   11   14   20   21   22   27   31   36   40   42   45   48   51   55   59   63   66 
LCS_GDT     R      53     R      53     11   12   24    10   10   11   11   15   17   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     V      54     V      54     11   12   24     4    8   11   11   11   12   17   22   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      55     D      55      3   13   24     3    3    5    5    8   10   13   19   19   22   23   24   33   36   43   49   51   59   61   66 
LCS_GDT     W      56     W      56     12   13   24    11   11   11   12   12   14   14   19   21   23   30   37   40   45   48   51   55   59   63   66 
LCS_GDT     P      57     P      57     12   13   24    11   11   11   12   12   14   16   19   21   23   25   34   42   45   48   51   55   59   63   66 
LCS_GDT     A      58     A      58     12   13   24    11   11   11   12   12   14   16   19   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     V      59     V      59     12   13   24    11   11   11   12   12   14   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     L      60     L      60     12   13   24    11   11   11   12   12   14   16   19   21   30   35   39   42   45   48   51   55   59   63   66 
LCS_GDT     T      61     T      61     12   13   24    11   11   11   12   12   14   16   19   21   27   35   37   42   44   48   51   55   59   63   66 
LCS_GDT     V      62     V      62     12   13   24    11   11   11   12   12   14   16   19   23   30   35   37   42   45   48   51   55   59   63   66 
LCS_GDT     A      63     A      63     12   13   24    11   11   11   12   12   14   16   21   23   30   35   37   42   45   48   51   55   59   63   66 
LCS_GDT     A      64     A      64     12   13   24    11   11   11   12   12   14   16   19   21   30   35   37   40   43   48   50   55   59   63   66 
LCS_GDT     E      65     E      65     12   13   24    11   11   11   12   12   14   16   19   21   24   35   37   40   43   48   49   54   59   63   66 
LCS_GDT     L      66     L      66     12   13   24    11   11   11   12   12   14   16   19   21   30   35   37   40   43   48   50   54   59   63   66 
LCS_GDT     G      67     G      67     12   13   24     3    3    7   11   12   14   14   19   21   30   35   37   40   43   48   50   54   59   63   66 
LCS_GDT     N      68     N      68      3    5   24     3    3    4    6    7   10   12   13   14   18   20   21   26   35   41   41   44   49   56   58 
LCS_GDT     N      69     N      69      3    6   22     3    4    4    6    7   10   12   13   14   18   20   21   24   35   41   41   44   51   62   66 
LCS_GDT     A      70     A      70      4    6   20     3    4    4    5    5    8   12   13   14   18   20   21   21   25   28   34   39   49   53   57 
LCS_GDT     L      71     L      71      4    6   20     3    4    4    5    7   10   12   13   14   18   20   21   21   25   30   35   44   49   53   62 
LCS_GDT     P      72     P      72      4    6   20     3    4    4    5    7   10   12   13   14   18   20   21   24   26   30   36   44   50   55   63 
LCS_GDT     P      73     P      73      4    6   20     3    4    4    5    7    9   12   13   14   15   20   21   21   24   30   35   39   48   53   57 
LCS_GDT     T      74     T      74      4    6   20     3    4    4    6    7   10   12   13   14   18   20   21   21   25   30   35   43   48   53   57 
LCS_GDT     K      75     K      75      3    5   20     3    3    5    6    7    9   12   12   14   15   20   21   21   22   25   30   37   39   42   44 
LCS_GDT     P      76     P      76      4    5   20     3    4    5    5    7   10   11   13   14   18   20   21   21   25   27   30   37   39   42   48 
LCS_GDT     S      77     S      77      4    5   20     3    4    5    5    7    9   11   12   14   18   20   21   21   25   30   34   39   44   51   56 
LCS_GDT     F      78     F      78      4    5   20     3    4    5    5    5    8    9   12   13   14   16   21   23   29   37   42   48   55   59   66 
LCS_GDT     P      79     P      79      4    5   22     3    4    5    5    5    7    9   10   12   15   18   24   31   39   42   47   51   55   59   66 
LCS_GDT     S      80     S      80      4    5   26     3    3    4    4    6    8   10   12   15   16   19   26   31   35   40   45   48   55   59   64 
LCS_GDT     S      81     S      81      4    5   26     3    3    4    4    5    8   10   12   15   18   19   23   24   28   37   42   47   53   59   64 
LCS_GDT     I      82     I      82      4    5   26     3    3    4    5    7    8   10   12   13   17   18   21   24   28   35   41   47   53   58   64 
LCS_GDT     Q      83     Q      83      4    5   28     3    3    4    5    7    8   10   12   23   25   30   32   39   39   47   48   51   55   59   66 
LCS_GDT     E      84     E      84      3    5   28     3    3    4    5    7    8   13   15   19   22   30   34   39   44   47   50   52   55   59   66 
LCS_GDT     L      85     L      85      3   17   28     4    4    4    5    9   14   20   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     T      86     T      86     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      87     D      87     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      88     D      88     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      89     D      89     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     M      90     M      90     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     A      91     A      91     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     I      92     I      92     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     L      93     L      93     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     N      94     N      94     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     D      95     D      95     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     L      96     L      96     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     H      97     H      97     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     T      98     T      98     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     L      99     L      99     16   19   28    14   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     L     100     L     100     16   19   28     5   15   16   17   17   20   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     L     101     L     101     16   19   28     3    5   16   17   17   20   21   22   25   31   35   39   42   45   48   50   55   59   63   66 
LCS_GDT     Q     102     Q     102      5   19   28     3    4    6    7   14   20   21   22   24   28   30   34   40   44   48   50   54   59   63   66 
LCS_GDT     T     103     T     103      5   19   28     3    4    6    7   16   20   21   22   25   31   34   39   42   44   47   50   54   59   63   66 
LCS_GDT     S     104     S     104      5   19   28     3    9   14   16   17   19   21   23   27   31   35   40   42   45   48   50   55   59   63   66 
LCS_GDT     I     105     I     105      5    9   28     4    7    9   12   15   19   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     A     106     A     106      5    9   28     3    4    5   10   14   17   21   23   27   32   37   40   42   45   48   51   55   59   63   66 
LCS_GDT     E     107     E     107      4    9   28     3    4    5    6    7   10   17   20   26   32   36   39   42   44   47   51   53   55   59   66 
LCS_GDT     G     108     G     108      4    9   28     3    4    5    5    7    8   11   13   16   20   26   34   39   44   47   50   52   55   59   66 
LCS_GDT     E     109     E     109      4    7   28     3    3    4    5    7    9   11   14   23   25   32   38   41   44   47   50   53   55   59   66 
LCS_GDT     M     110     M     110      4    7   28     3    3    6    8   10   10   11   13   15   18   24   31   39   44   47   51   53   55   59   66 
LCS_GDT     K     111     K     111      4    7   18     3    3    4    6   10   10   11   11   13   14   18   23   27   31   37   41   45   52   59   64 
LCS_GDT     C     112     C     112      4    7   18     3    3    6    8   10   10   11   11   14   16   19   23   25   26   28   31   35   42   45   52 
LCS_GDT     R     113     R     113      4    7   18     3    3    6    8   10   10   12   13   14   16   18   23   25   26   28   30   33   36   40   48 
LCS_GDT     N     114     N     114      4    7   18     3    3    6    7   10   10   11   11   13   15   18   21   24   26   28   29   33   35   39   43 
LCS_GDT     C     115     C     115      3    7   18     3    3    6    8   10   10   11   11   12   13   17   18   18   18   23   27   29   35   36   40 
LCS_GDT     G     116     G     116      4    6   18     3    4    4    5    8    8    8   11   12   14   17   18   21   21   23   27   29   32   36   40 
LCS_GDT     H     117     H     117      4    6   18     3    4    5    8   10   10   11   12   14   15   17   19   20   21   23   24   29   32   35   39 
LCS_GDT     I     118     I     118      4    6   18     3    4    5    8   10   12   13   15   16   18   20   21   22   23   28   31   35   37   44   47 
LCS_GDT     Y     119     Y     119      4    6   18     3    4    6    8   10   12   13   15   16   18   20   21   25   29   35   41   45   50   59   64 
LCS_GDT     Y     120     Y     120      4    5   18     0    4    5    8   10   10   11   15   16   18   20   23   29   33   37   44   51   55   59   66 
LCS_GDT     I     121     I     121      4    5   18     0    4    5    8   10   12   13   15   16   18   20   25   29   34   38   45   51   55   59   66 
LCS_GDT     K     122     K     122      4    5   18     1    4    5    8   10   12   13   15   16   18   20   25   29   33   37   44   51   55   59   64 
LCS_GDT     N     123     N     123      4    5   18     0    4    5    8   10   12   13   15   16   18   20   25   29   34   38   45   51   55   59   66 
LCS_GDT     G     124     G     124      3    5   18     0    3    3    4    6    8    8   12   13   15   17   18   29   32   37   43   51   55   59   64 
LCS_GDT     I     125     I     125      3    5   18     3    3    3    4    5    8    8   12   13   15   17   18   18   23   30   34   42   47   53   60 
LCS_GDT     P     126     P     126      3    5   16     3    3    4    4    6    8    8   12   13   15   17   18   18   23   23   24   26   28   37   40 
LCS_GDT     N     127     N     127      3    6   14     3    3    4    5    7    8    8   12   13   15   17   18   18   23   23   24   27   32   37   40 
LCS_GDT     L     128     L     128      4    6   14     3    3    5    5    7    7    8   10   11   14   17   17   17   23   23   24   26   30   37   38 
LCS_GDT     L     129     L     129      4    6   14     3    4    5    5    6    8    8   12   13   15   17   18   18   23   23   24   27   32   37   40 
LCS_GDT     L     130     L     130      4    6   14     3    4    5    5    7    8    8   12   13   15   17   18   18   23   23   32   36   39   40   54 
LCS_GDT     P     131     P     131      4    6   14     3    4    5    5    6    8    8   12   13   15   17   18   18   23   27   32   36   39   52   54 
LCS_GDT     P     132     P     132      4    6   14     3    4    5    5    7    8    8   10   13   15   17   18   18   23   33   35   40   46   52   54 
LCS_GDT     H     133     H     133      4    6   14     3    3    5    5    7    7    8    8   10   11   15   15   17   18   19   22   36   39   40   54 
LCS_GDT     L     134     L     134      4    6   14     3    3    5    5    7    7    7    8   10   10   11   11   13   14   14   15   26   28   29   30 
LCS_GDT     V     135     V     135      4    6   14     0    3    5    5    7    7    7    8   10   12   13   14   15   17   20   24   26   28   29   30 
LCS_AVERAGE  LCS_A:   9.46  (   5.07    7.23   16.07 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     17     17     20     21     23     27     32     37     40     42     45     48     51     55     59     63     66 
GDT PERCENT_CA  10.37  11.11  11.85  12.59  12.59  14.81  15.56  17.04  20.00  23.70  27.41  29.63  31.11  33.33  35.56  37.78  40.74  43.70  46.67  48.89
GDT RMS_LOCAL    0.17   0.32   0.57   0.74   0.74   1.45   1.71   2.29   3.07   3.59   3.94   4.10   4.23   4.53   4.87   5.35   5.64   5.99   6.31   6.53
GDT RMS_ALL_CA  18.09  18.02  18.19  18.36  18.36  17.95  18.30  16.42  16.51  16.01  15.78  15.87  16.04  16.00  16.02  15.47  16.08  17.55  16.75  17.19

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.881
LGA    K       2      K       2         10.064
LGA    F       3      F       3         11.104
LGA    L       4      L       4          4.639
LGA    T       5      T       5          3.651
LGA    T       6      T       6          4.226
LGA    N       7      N       7          2.370
LGA    F       8      F       8          6.251
LGA    L       9      L       9          8.866
LGA    K      10      K      10         11.550
LGA    C      11      C      11         10.846
LGA    S      12      S      12         11.460
LGA    V      13      V      13         13.951
LGA    K      14      K      14         16.946
LGA    A      15      A      15         16.041
LGA    C      16      C      16         13.382
LGA    D      17      D      17         11.724
LGA    T      18      T      18         12.989
LGA    S      19      S      19          9.456
LGA    N      20      N      20          9.164
LGA    D      21      D      21         10.645
LGA    N      22      N      22         10.198
LGA    F      23      F      23          9.235
LGA    P      24      P      24         11.187
LGA    L      25      L      25          9.611
LGA    Q      26      Q      26          9.119
LGA    Y      27      Y      27          6.499
LGA    D      28      D      28          7.129
LGA    G      29      G      29          5.801
LGA    S      30      S      30         12.342
LGA    K      31      K      31         14.900
LGA    C      32      C      32         14.479
LGA    Q      33      Q      33         18.407
LGA    L      34      L      34         17.436
LGA    V      35      V      35         18.788
LGA    Q      36      Q      36         21.973
LGA    D      37      D      37         24.085
LGA    E      38      E      38         29.155
LGA    S      39      S      39         32.221
LGA    I      40      I      40         27.210
LGA    E      41      E      41         29.906
LGA    F      42      F      42         25.766
LGA    N      43      N      43         22.663
LGA    P      44      P      44         17.248
LGA    E      45      E      45         13.890
LGA    F      46      F      46         11.234
LGA    L      47      L      47          9.430
LGA    L      48      L      48          8.367
LGA    N      49      N      49          2.887
LGA    I      50      I      50          2.426
LGA    V      51      V      51          3.956
LGA    D      52      D      52          7.148
LGA    R      53      R      53          8.195
LGA    V      54      V      54          9.320
LGA    D      55      D      55         12.762
LGA    W      56      W      56          9.779
LGA    P      57      P      57         11.118
LGA    A      58      A      58          7.217
LGA    V      59      V      59          4.633
LGA    L      60      L      60          8.209
LGA    T      61      T      61         10.534
LGA    V      62      V      62          8.641
LGA    A      63      A      63          8.488
LGA    A      64      A      64         12.649
LGA    E      65      E      65         14.667
LGA    L      66      L      66         14.123
LGA    G      67      G      67         15.608
LGA    N      68      N      68         15.879
LGA    N      69      N      69         15.293
LGA    A      70      A      70         17.432
LGA    L      71      L      71         14.480
LGA    P      72      P      72         13.010
LGA    P      73      P      73         15.251
LGA    T      74      T      74         14.892
LGA    K      75      K      75         20.120
LGA    P      76      P      76         18.350
LGA    S      77      S      77         16.764
LGA    F      78      F      78         14.171
LGA    P      79      P      79         12.837
LGA    S      80      S      80         15.610
LGA    S      81      S      81         17.373
LGA    I      82      I      82         17.669
LGA    Q      83      Q      83         13.131
LGA    E      84      E      84          9.557
LGA    L      85      L      85          4.832
LGA    T      86      T      86          3.101
LGA    D      87      D      87          2.088
LGA    D      88      D      88          1.755
LGA    D      89      D      89          1.624
LGA    M      90      M      90          1.452
LGA    A      91      A      91          0.564
LGA    I      92      I      92          0.343
LGA    L      93      L      93          0.941
LGA    N      94      N      94          1.227
LGA    D      95      D      95          1.359
LGA    L      96      L      96          1.698
LGA    H      97      H      97          2.574
LGA    T      98      T      98          2.845
LGA    L      99      L      99          3.209
LGA    L     100      L     100          3.325
LGA    L     101      L     101          6.289
LGA    Q     102      Q     102          8.666
LGA    T     103      T     103          5.681
LGA    S     104      S     104          3.118
LGA    I     105      I     105          1.326
LGA    A     106      A     106          2.480
LGA    E     107      E     107          7.744
LGA    G     108      G     108         12.666
LGA    E     109      E     109         11.521
LGA    M     110      M     110         13.109
LGA    K     111      K     111         19.324
LGA    C     112      C     112         22.376
LGA    R     113      R     113         25.948
LGA    N     114      N     114         30.798
LGA    C     115      C     115         32.243
LGA    G     116      G     116         32.305
LGA    H     117      H     117         28.949
LGA    I     118      I     118         23.274
LGA    Y     119      Y     119         18.914
LGA    Y     120      Y     120         16.174
LGA    I     121      I     121         16.331
LGA    K     122      K     122         19.233
LGA    N     123      N     123         19.670
LGA    G     124      G     124         20.373
LGA    I     125      I     125         25.664
LGA    P     126      P     126         28.575
LGA    N     127      N     127         31.497
LGA    L     128      L     128         33.513
LGA    L     129      L     129         32.314
LGA    L     130      L     130         27.179
LGA    P     131      P     131         25.588
LGA    P     132      P     132         24.571
LGA    H     133      H     133         25.593
LGA    L     134      L     134         28.385
LGA    V     135      V     135         27.703

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     23    2.29    19.630    16.499     0.964

LGA_LOCAL      RMSD =  2.287  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.054  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 13.770  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.118989 * X  +   0.071848 * Y  +   0.990293 * Z  +  24.444124
  Y_new =   0.921085 * X  +   0.380395 * Y  +   0.083075 * Z  +  -4.629582
  Z_new =  -0.370733 * X  +   0.922029 * Y  +  -0.111441 * Z  +  13.240327 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.691078   -1.450515  [ DEG:    96.8916    -83.1084 ]
  Theta =   0.379799    2.761794  [ DEG:    21.7609    158.2392 ]
  Phi   =   1.699269   -1.442324  [ DEG:    97.3609    -82.6391 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS393_3                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS393_3.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   23   2.29  16.499    13.77
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS393_3
PFRMAT TS
TARGET T0319
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      18.197  -0.040  27.559  1.00 25.00           C
ATOM      2  CA  LYS     2      19.120  -1.938  24.448  1.00 25.00           C
ATOM      3  CA  PHE     3      22.539  -2.798  22.951  1.00 25.00           C
ATOM      4  CA  LEU     4      21.820  -2.123  19.290  1.00 25.00           C
ATOM      5  CA  THR     5      20.833  -0.588  15.964  1.00 25.00           C
ATOM      6  CA  THR     6      20.111   0.085  12.325  1.00 25.00           C
ATOM      7  CA  ASN     7      16.368  -0.212  12.856  1.00 25.00           C
ATOM      8  CA  PHE     8      13.686   0.753  10.259  1.00 25.00           C
ATOM      9  CA  LEU     9      15.104  -0.214   6.832  1.00 25.00           C
ATOM     10  CA  LYS    10      14.771   2.656   4.414  1.00 25.00           C
ATOM     11  CA  CYS    11      13.937   4.866   7.408  1.00 25.00           C
ATOM     12  CA  SER    12      10.304   3.826   7.048  1.00 25.00           C
ATOM     13  CA  VAL    13       9.767   7.481   6.049  1.00 25.00           C
ATOM     14  CA  LYS    14       8.843  10.225   8.419  1.00 25.00           C
ATOM     15  CA  ALA    15       9.224   8.032  11.442  1.00 25.00           C
ATOM     16  CA  CYS    16      10.995   4.888  12.592  1.00 25.00           C
ATOM     17  CA  ASP    17       7.812   4.408  14.616  1.00 25.00           C
ATOM     18  CA  THR    18       6.138   3.936  11.220  1.00 25.00           C
ATOM     19  CA  SER    19       7.495   0.457  10.593  1.00 25.00           C
ATOM     20  CA  ASN    20       4.892  -1.138  12.861  1.00 25.00           C
ATOM     21  CA  ASP    21       7.754  -2.205  15.071  1.00 25.00           C
ATOM     22  CA  ASN    22       9.294   0.248  17.511  1.00 25.00           C
ATOM     23  CA  PHE    23      12.901  -0.616  16.806  1.00 25.00           C
ATOM     24  CA  PRO    24      16.368   0.376  18.122  1.00 25.00           C
ATOM     25  CA  LEU    25      15.619   3.560  16.074  1.00 25.00           C
ATOM     26  CA  GLN    26      16.723   4.755  12.592  1.00 25.00           C
ATOM     27  CA  TYR    27      18.867   3.801   9.560  1.00 25.00           C
ATOM     28  CA  ASP    28      19.403   5.354   6.153  1.00 25.00           C
ATOM     29  CA  GLY    29      22.574   6.519   4.391  1.00 25.00           C
ATOM     30  CA  SER    30      23.634   2.915   3.654  1.00 25.00           C
ATOM     31  CA  LYS    31      22.044   0.921   6.468  1.00 25.00           C
ATOM     32  CA  CYS    32      19.753  -1.896   7.718  1.00 25.00           C
ATOM     33  CA  GLN    33      17.493  -3.876  10.074  1.00 25.00           C
ATOM     34  CA  LEU    34      18.146  -4.809  13.701  1.00 25.00           C
ATOM     35  CA  VAL    35      17.618  -4.524  17.410  1.00 25.00           C
ATOM     36  CA  GLN    36      15.031  -7.256  17.236  1.00 25.00           C
ATOM     37  CA  ASP    37      13.892  -9.815  19.812  1.00 25.00           C
ATOM     38  CA  GLU    38      11.847 -12.983  20.331  1.00 25.00           C
ATOM     39  CA  SER    39      10.554 -16.459  19.742  1.00 25.00           C
ATOM     40  CA  ILE    40      13.203 -16.670  16.962  1.00 25.00           C
ATOM     41  CA  GLU    41      11.642 -17.705  13.622  1.00 25.00           C
ATOM     42  CA  PHE    42      13.603 -15.295  11.353  1.00 25.00           C
ATOM     43  CA  ASN    43      16.487 -17.680  11.843  1.00 25.00           C
ATOM     44  CA  PRO    44      20.235 -16.979  11.246  1.00 25.00           C
ATOM     45  CA  GLU    45      20.652 -17.728  14.979  1.00 25.00           C
ATOM     46  CA  PHE    46      24.174 -16.224  14.912  1.00 25.00           C
ATOM     47  CA  LEU    47      22.829 -13.091  13.168  1.00 25.00           C
ATOM     48  CA  LEU    48      20.070 -12.776  15.805  1.00 25.00           C
ATOM     49  CA  ASN    49      22.669 -13.113  18.599  1.00 25.00           C
ATOM     50  CA  ILE    50      24.822 -10.404  16.956  1.00 25.00           C
ATOM     51  CA  VAL    51      21.771  -8.101  16.699  1.00 25.00           C
ATOM     52  CA  ASP    52      20.974  -8.703  20.395  1.00 25.00           C
ATOM     53  CA  ARG    53      24.531  -7.699  21.422  1.00 25.00           C
ATOM     54  CA  VAL    54      26.154  -5.824  18.612  1.00 25.00           C
ATOM     55  CA  ASP    55      28.227  -6.773  15.514  1.00 25.00           C
ATOM     56  CA  TRP    56      25.866  -4.550  13.527  1.00 25.00           C
ATOM     57  CA  PRO    57      24.709  -8.039  12.453  1.00 25.00           C
ATOM     58  CA  ALA    58      21.766  -6.501  10.545  1.00 25.00           C
ATOM     59  CA  VAL    59      24.142  -4.054   8.803  1.00 25.00           C
ATOM     60  CA  LEU    60      26.455  -6.949   7.838  1.00 25.00           C
ATOM     61  CA  THR    61      23.472  -8.899   6.436  1.00 25.00           C
ATOM     62  CA  VAL    62      22.390  -5.834   4.409  1.00 25.00           C
ATOM     63  CA  ALA    63      25.945  -5.457   3.036  1.00 25.00           C
ATOM     64  CA  ALA    64      25.989  -9.161   2.061  1.00 25.00           C
ATOM     65  CA  GLU    65      22.615  -8.760   0.294  1.00 25.00           C
ATOM     66  CA  LEU    66      23.939  -5.704  -1.596  1.00 25.00           C
ATOM     67  CA  GLY    67      24.754  -7.567  -4.811  1.00 25.00           C
ATOM     68  CA  ASN    68      23.194  -7.978  -8.192  1.00 25.00           C
ATOM     69  CA  ASN    69      22.272 -11.648  -8.078  1.00 25.00           C
ATOM     70  CA  ALA    70      22.078 -15.259  -6.813  1.00 25.00           C
ATOM     71  CA  LEU    71      25.889 -15.001  -6.669  1.00 25.00           C
ATOM     72  CA  PRO    72      29.207 -16.024  -8.358  1.00 25.00           C
ATOM     73  CA  PRO    73      28.765 -19.679  -9.349  1.00 25.00           C
ATOM     74  CA  THR    74      30.089 -21.914  -6.568  1.00 25.00           C
ATOM     75  CA  LYS    75      33.301 -21.683  -8.555  1.00 25.00           C
ATOM     76  CA  PRO    76      36.409 -21.323  -6.366  1.00 25.00           C
ATOM     77  CA  SER    77      37.073 -23.379  -3.254  1.00 25.00           C
ATOM     78  CA  PHE    78      34.684 -23.174  -0.279  1.00 25.00           C
ATOM     79  CA  PRO    79      35.849 -25.401   2.640  1.00 25.00           C
ATOM     80  CA  SER    80      38.978 -23.437   3.684  1.00 25.00           C
ATOM     81  CA  SER    81      41.292 -20.431   3.298  1.00 25.00           C
ATOM     82  CA  ILE    82      43.537 -17.314   3.190  1.00 25.00           C
ATOM     83  CA  GLN    83      44.413 -17.873   6.849  1.00 25.00           C
ATOM     84  CA  GLU    84      45.320 -15.863   9.958  1.00 25.00           C
ATOM     85  CA  LEU    85      41.933 -15.643  11.611  1.00 25.00           C
ATOM     86  CA  THR    86      39.690 -13.915  14.090  1.00 25.00           C
ATOM     87  CA  ASP    87      41.271 -10.737  12.653  1.00 25.00           C
ATOM     88  CA  ASP    88      39.077 -11.029   9.528  1.00 25.00           C
ATOM     89  CA  ASP    89      35.967 -11.453  11.722  1.00 25.00           C
ATOM     90  CA  MET    90      36.949  -8.361  13.756  1.00 25.00           C
ATOM     91  CA  ALA    91      37.426  -6.358  10.528  1.00 25.00           C
ATOM     92  CA  ILE    92      33.986  -7.492   9.286  1.00 25.00           C
ATOM     93  CA  LEU    93      32.412  -6.449  12.618  1.00 25.00           C
ATOM     94  CA  ASN    94      34.108  -3.023  12.374  1.00 25.00           C
ATOM     95  CA  ASP    95      32.801  -2.604   8.799  1.00 25.00           C
ATOM     96  CA  LEU    96      29.268  -3.522   9.955  1.00 25.00           C
ATOM     97  CA  HIS    97      29.510  -0.970  12.801  1.00 25.00           C
ATOM     98  CA  THR    98      30.668   1.715  10.328  1.00 25.00           C
ATOM     99  CA  LEU    99      27.731   0.883   8.012  1.00 25.00           C
ATOM    100  CA  LEU   100      25.302   1.140  10.962  1.00 25.00           C
ATOM    101  CA  LEU   101      26.791   4.536  11.924  1.00 25.00           C
ATOM    102  CA  GLN   102      26.412   5.753   8.312  1.00 25.00           C
ATOM    103  CA  THR   103      22.983   6.800   9.543  1.00 25.00           C
ATOM    104  CA  SER   104      21.460   6.805  12.993  1.00 25.00           C
ATOM    105  CA  ILE   105      20.247   9.934  14.867  1.00 25.00           C
ATOM    106  CA  ALA   106      22.823  12.090  16.725  1.00 25.00           C
ATOM    107  CA  GLU   107      21.302  12.240  20.208  1.00 25.00           C
ATOM    108  CA  GLY   108      20.396   8.933  21.921  1.00 25.00           C
ATOM    109  CA  GLU   109      17.657   8.676  19.284  1.00 25.00           C
ATOM    110  CA  MET   110      19.882   5.964  17.888  1.00 25.00           C
ATOM    111  CA  LYS   111      23.617   6.824  18.290  1.00 25.00           C
ATOM    112  CA  CYS   112      25.916   8.222  15.610  1.00 25.00           C
ATOM    113  CA  ARG   113      27.667  11.316  14.245  1.00 25.00           C
ATOM    114  CA  ASN   114      30.294  11.147  11.429  1.00 25.00           C
ATOM    115  CA  CYS   115      31.308   7.819  12.985  1.00 25.00           C
ATOM    116  CA  GLY   116      32.922   6.202  16.005  1.00 25.00           C
ATOM    117  CA  HIS   117      30.258   3.512  15.822  1.00 25.00           C
ATOM    118  CA  ILE   118      26.538   2.797  15.663  1.00 25.00           C
ATOM    119  CA  TYR   119      23.964   2.507  18.417  1.00 25.00           C
ATOM    120  CA  TYR   120      21.462   2.992  21.254  1.00 25.00           C
ATOM    121  CA  ILE   121      24.513   2.390  23.398  1.00 25.00           C
ATOM    122  CA  LYS   122      27.407   2.978  25.870  1.00 25.00           C
ATOM    123  CA  ASN   123      30.089   2.435  28.494  1.00 25.00           C
ATOM    124  CA  GLY   124      32.541   3.354  31.305  1.00 25.00           C
ATOM    125  CA  ILE   125      35.352   2.423  33.758  1.00 25.00           C
ATOM    126  CA  PRO   126      32.922   2.242  36.636  1.00 25.00           C
ATOM    127  CA  ASN   127      31.207  -1.015  37.701  1.00 25.00           C
ATOM    128  CA  LEU   128      33.814  -3.565  36.739  1.00 25.00           C
ATOM    129  CA  LEU   129      32.911  -6.574  38.853  1.00 25.00           C
ATOM    130  CA  LEU   130      30.080  -8.907  37.783  1.00 25.00           C
ATOM    131  CA  PRO   131      28.002 -12.065  38.425  1.00 25.00           C
ATOM    132  CA  PRO   132      30.574 -14.659  37.274  1.00 25.00           C
ATOM    133  CA  HIS   133      33.692 -16.722  36.550  1.00 25.00           C
ATOM    134  CA  LEU   134      37.065 -14.934  36.689  1.00 25.00           C
ATOM    135  CA  VAL   135      37.314 -15.497  32.973  1.00 25.00           C
TER
END
