
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_5
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_5.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    49        23 - 71          4.87    20.23
  LONGEST_CONTINUOUS_SEGMENT:    49        24 - 72          4.80    20.24
  LONGEST_CONTINUOUS_SEGMENT:    49        25 - 73          4.95    20.24
  LCS_AVERAGE:     27.95

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35        36 - 70          1.97    21.41
  LCS_AVERAGE:     14.23

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        42 - 67          0.97    21.83
  LCS_AVERAGE:      9.28

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      0    3   22     0    0    0    3    4    4    8   10   11   13   15   20   22   32   38   41   47   51   54   58 
LCS_GDT     K       2     K       2      6    9   22     4    5    8    8   12   15   17   18   23   29   38   44   49   50   53   58   61   68   73   75 
LCS_GDT     F       3     F       3      7    9   22     4    5    8    8   12   15   17   21   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     L       4     L       4      7    9   22     4    6    8   10   13   18   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     T       5     T       5      7    9   22     5    6    8   12   17   19   21   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     T       6     T       6      7    9   22     5    6    8    8   12   15   17   19   25   30   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     N       7     N       7      7    9   22     5    6    8    8   12   15   17   20   24   30   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     F       8     F       8      7    9   22     5    6    8    8   12   17   18   24   27   32   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     L       9     L       9      7    9   22     5    6    8    8   12   15   17   18   20   29   34   39   49   50   53   58   62   68   73   75 
LCS_GDT     K      10     K      10      4    9   22     4    4    5    8   10   11   17   18   20   23   25   34   36   39   47   58   60   65   72   75 
LCS_GDT     C      11     C      11      4    5   22     4    4    4    5    7    9   16   17   19   23   28   31   40   48   51   58   62   68   73   75 
LCS_GDT     S      12     S      12      4    5   22     4    4    5    6    8   10   12   15   17   21   23   28   33   39   42   50   59   61   72   73 
LCS_GDT     V      13     V      13      4    5   22     4    4    5    5    7   10   16   17   17   22   25   31   34   42   47   58   62   68   73   75 
LCS_GDT     K      14     K      14      4    5   22     3    3    5    5    8   10   12   15   17   20   22   24   26   39   43   47   53   57   65   72 
LCS_GDT     A      15     A      15      4    5   22     3    3    5    7   10   11   16   17   17   22   24   28   33   39   48   55   62   68   73   75 
LCS_GDT     C      16     C      16      3    4   22     3    3    3    5    7    9   16   17   17   20   23   35   44   48   53   58   62   68   73   75 
LCS_GDT     D      17     D      17      3    6   22     3    3    5    5    6    7   16   17   17   27   33   39   44   49   53   58   62   68   73   75 
LCS_GDT     T      18     T      18      3    6   22     3    4    5    5    7    9   10   12   15   17   23   24   36   46   52   58   62   68   73   75 
LCS_GDT     S      19     S      19      3    6   23     3    3    4    7   12   17   19   25   32   34   38   44   49   50   53   58   61   68   73   75 
LCS_GDT     N      20     N      20      3    6   23     3    4    6    8   12   17   19   26   32   34   38   44   49   50   53   58   59   66   72   75 
LCS_GDT     D      21     D      21      4    6   23     3    4    5    5    6    7    8   11   14   24   31   34   37   43   47   53   55   60   65   68 
LCS_GDT     N      22     N      22      4    6   23     3    4    5    5    6   14   15   26   32   34   38   44   49   50   53   57   61   67   73   75 
LCS_GDT     F      23     F      23      6   11   49     3    4    6   10   14   19   24   29   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     P      24     P      24      6   11   49     3    5    6   12   17   22   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     L      25     L      25      6   11   49     4    7    9   12   17   22   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     Q      26     Q      26      6   11   49     4    7    9   12   17   22   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     Y      27     Y      27      6   11   49     4    7    9   12   17   22   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     D      28     D      28      6   11   49     5    6    9   12   17   22   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     G      29     G      29      6   11   49     5    7    9   12   17   22   24   28   33   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     S      30     S      30      6   11   49     5    7    9   12   17   20   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     K      31     K      31      6   11   49     5    5    6   12   17   19   24   27   32   34   38   44   49   50   53   58   61   67   73   75 
LCS_GDT     C      32     C      32      6   11   49     5    5    9   12   17   22   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     Q      33     Q      33      3   11   49     3    3    8   13   17   22   24   27   32   38   40   44   49   50   53   58   61   67   72   75 
LCS_GDT     L      34     L      34      3    3   49     3    3    4    8    9   19   27   32   35   38   40   41   42   45   48   50   52   56   60   67 
LCS_GDT     V      35     V      35      3   34   49     1    3    3    7   11   21   27   32   35   38   40   41   42   45   48   50   52   56   59   65 
LCS_GDT     Q      36     Q      36      3   35   49     3   13   19   28   31   31   33   34   36   38   40   41   42   45   48   50   52   55   58   64 
LCS_GDT     D      37     D      37      3   35   49     3    3    5    7   24   28   32   34   36   38   40   41   42   45   48   50   52   54   55   59 
LCS_GDT     E      38     E      38      3   35   49     3    3    5    5    7   30   33   34   36   38   40   41   42   45   48   50   52   54   55   56 
LCS_GDT     S      39     S      39     17   35   49     5   13   18   23   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   58 
LCS_GDT     I      40     I      40     17   35   49     5   13   22   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   58 
LCS_GDT     E      41     E      41     17   35   49     5   13   24   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   58 
LCS_GDT     F      42     F      42     26   35   49     5   13   25   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   56 
LCS_GDT     N      43     N      43     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   56 
LCS_GDT     P      44     P      44     26   35   49     9   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   56 
LCS_GDT     E      45     E      45     26   35   49    10   13   25   29   31   31   33   34   36   38   40   41   42   45   47   50   52   54   55   56 
LCS_GDT     F      46     F      46     26   35   49    10   13   25   29   31   31   33   34   36   38   40   41   42   45   47   50   52   54   55   56 
LCS_GDT     L      47     L      47     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   58 
LCS_GDT     L      48     L      48     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   58 
LCS_GDT     N      49     N      49     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   52   54   55   58 
LCS_GDT     I      50     I      50     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   52   55   61   65 
LCS_GDT     V      51     V      51     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   53   60   62   69 
LCS_GDT     D      52     D      52     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   48   50   55   60   63   69 
LCS_GDT     R      53     R      53     26   35   49    10   17   25   29   31   31   33   34   36   38   40   41   42   45   49   55   60   68   73   75 
LCS_GDT     V      54     V      54     26   35   49     8   15   25   29   31   31   33   34   36   38   40   41   44   49   53   57   62   68   73   75 
LCS_GDT     D      55     D      55     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     W      56     W      56     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     P      57     P      57     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     A      58     A      58     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     V      59     V      59     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     L      60     L      60     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     T      61     T      61     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     V      62     V      62     26   35   49    11   16   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     A      63     A      63     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     A      64     A      64     26   35   49    11   17   25   29   31   31   33   34   36   38   40   43   49   50   53   58   62   68   73   75 
LCS_GDT     E      65     E      65     26   35   49    11   17   25   29   31   31   33   34   36   38   40   41   49   50   53   58   62   68   73   75 
LCS_GDT     L      66     L      66     26   35   49    11   17   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     G      67     G      67     26   35   49     9   15   25   29   31   31   33   34   36   38   40   44   49   50   53   58   62   68   73   75 
LCS_GDT     N      68     N      68     23   35   49     4   13   24   29   31   31   33   34   36   38   40   43   49   50   53   58   62   68   73   75 
LCS_GDT     N      69     N      69      7   35   49     3    6    9    9   11   16   32   34   36   38   40   40   44   49   53   57   62   68   73   75 
LCS_GDT     A      70     A      70      7   35   49     5    7    9   11   25   30   33   34   36   38   40   41   43   48   51   57   62   68   73   75 
LCS_GDT     L      71     L      71      7   32   49     5    7    9    9   13   17   26   33   36   38   40   40   44   49   53   57   62   68   73   75 
LCS_GDT     P      72     P      72      7   10   49     5    7    9    9   11   16   17   21   24   30   34   39   43   48   51   57   62   68   73   75 
LCS_GDT     P      73     P      73      7    9   49     5    7    9    9   11   16   17   20   23   27   32   34   39   45   51   57   59   63   73   75 
LCS_GDT     T      74     T      74      7    9   48     5    6    9    9   11   16   17   20   23   27   32   35   40   48   51   57   61   67   73   75 
LCS_GDT     K      75     K      75      7    9   47     3    4    7    8   10   16   16   20   25   30   36   38   44   50   53   58   62   68   73   75 
LCS_GDT     P      76     P      76      5   10   44     3    3    6    8    9   11   16   18   24   31   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     S      77     S      77      6   10   40     3    5    8   10   12   15   21   29   32   32   35   44   49   50   53   58   62   68   73   75 
LCS_GDT     F      78     F      78      6   10   40     3    5    8   10   15   21   24   29   32   32   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     P      79     P      79      7   10   40     3    5    8   10   15   19   24   29   32   32   35   44   49   50   53   58   61   68   73   75 
LCS_GDT     S      80     S      80      7   10   40     3    6    7   10   11   16   24   29   32   32   35   44   49   50   53   58   62   68   73   75 
LCS_GDT     S      81     S      81      7   10   40     5    6    8   10   13   21   24   29   32   32   37   44   49   50   53   58   61   66   73   75 
LCS_GDT     I      82     I      82      7   10   40     5    6    8   10   13   18   24   29   32   32   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     Q      83     Q      83      7   21   40     5    6    8   10   13   18   23   27   32   32   38   44   49   50   53   58   61   66   72   74 
LCS_GDT     E      84     E      84     14   22   40     5    6   14   18   20   22   24   29   32   32   35   38   45   50   53   58   61   66   72   74 
LCS_GDT     L      85     L      85     17   22   40     5   13   16   18   20   22   24   29   32   32   35   41   49   50   53   58   62   68   73   75 
LCS_GDT     T      86     T      86     17   22   40     8   15   16   18   20   22   24   29   32   32   37   39   44   50   53   58   62   68   73   75 
LCS_GDT     D      87     D      87     17   22   40    11   15   16   18   20   22   24   29   32   32   35   39   44   49   52   57   62   68   73   75 
LCS_GDT     D      88     D      88     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   62   68   73   75 
LCS_GDT     D      89     D      89     17   22   40    11   15   16   18   20   22   24   29   32   32   37   39   44   49   53   57   62   68   73   75 
LCS_GDT     M      90     M      90     17   22   40    11   15   16   18   20   22   24   29   32   32   35   39   44   49   53   57   62   68   73   75 
LCS_GDT     A      91     A      91     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   62   68   73   75 
LCS_GDT     I      92     I      92     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   62   68   73   75 
LCS_GDT     L      93     L      93     17   22   40    11   15   16   18   20   22   24   29   32   32   35   39   44   49   53   57   62   68   73   75 
LCS_GDT     N      94     N      94     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   59   64   73   75 
LCS_GDT     D      95     D      95     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   59   62   65   72 
LCS_GDT     L      96     L      96     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   62   68   73   75 
LCS_GDT     H      97     H      97     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   62   68   73   75 
LCS_GDT     T      98     T      98     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   59   60   65   72 
LCS_GDT     L      99     L      99     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   46   51   57   59   60   65   72 
LCS_GDT     L     100     L     100     17   22   40    11   15   16   18   20   22   24   29   32   32   35   38   43   48   51   57   61   68   73   75 
LCS_GDT     L     101     L     101     17   22   40     4    8   16   18   20   22   24   29   32   32   35   38   43   48   51   57   59   62   68   75 
LCS_GDT     Q     102     Q     102      7   22   40     3    5    8   17   20   22   24   29   32   32   35   38   43   48   51   57   59   60   65   70 
LCS_GDT     T     103     T     103      7   22   40     3    5    8   17   20   22   24   29   32   32   35   38   43   48   51   57   59   60   65   70 
LCS_GDT     S     104     S     104      7   22   40     3    5    7   16   20   22   23   26   32   32   35   38   43   48   51   57   59   60   65   70 
LCS_GDT     I     105     I     105      7   22   40     3    5   10   16   20   22   22   26   29   32   35   38   43   48   51   57   59   60   65   70 
LCS_GDT     A     106     A     106      6   16   40     3    5    8   10   14   18   20   24   27   30   35   38   43   48   51   57   59   60   65   72 
LCS_GDT     E     107     E     107      6   18   40     3    5    8   10   14   18   20   24   26   30   33   38   43   48   51   57   59   60   65   72 
LCS_GDT     G     108     G     108     16   18   40     3   10   15   17   18   19   21   24   27   30   33   38   43   46   50   54   58   60   65   72 
LCS_GDT     E     109     E     109     16   18   40     5   13   15   17   18   19   21   21   22   24   25   29   31   39   41   48   51   54   56   58 
LCS_GDT     M     110     M     110     16   18   37     5   13   15   17   18   19   21   21   22   24   25   26   30   32   33   38   42   47   49   53 
LCS_GDT     K     111     K     111     16   18   30     3   12   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     C     112     C     112     16   18   26     7   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     R     113     R     113     16   18   26     7   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     N     114     N     114     16   18   26     7   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     C     115     C     115     16   18   26     6   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     G     116     G     116     16   18   26     7   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     H     117     H     117     16   18   26     7   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     I     118     I     118     16   18   26     7   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     Y     119     Y     119     16   18   26     7   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   37   40   41   43 
LCS_GDT     Y     120     Y     120     16   18   26     5   13   15   17   18   19   21   21   22   24   25   26   30   32   33   35   40   47   53   56 
LCS_GDT     I     121     I     121     16   18   26     5   13   15   17   18   19   21   21   22   24   25   30   33   38   48   53   58   65   72   75 
LCS_GDT     K     122     K     122     16   18   26     3   12   15   17   18   19   21   21   22   24   25   30   36   43   48   55   61   68   73   75 
LCS_GDT     N     123     N     123     16   18   26     3   13   15   17   18   19   21   21   25   30   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     G     124     G     124     16   18   26     3    9   15   17   18   19   23   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     I     125     I     125      4   18   26     3    4   12   14   16   17   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     P     126     P     126      4    5   26     3    4    5    7   12   17   24   27   32   34   38   44   49   50   53   58   62   68   73   75 
LCS_GDT     N     127     N     127      3    7   26     3    3    5    7    7   14   16   18   23   29   34   39   42   48   52   58   60   65   72   75 
LCS_GDT     L     128     L     128      3    7   26     3    3    5    6    7   17   17   18   23   25   29   33   35   43   51   51   57   65   67   73 
LCS_GDT     L     129     L     129      5    7   26     5    5    5    6   12   15   17   18   23   25   29   33   35   38   41   45   47   56   58   62 
LCS_GDT     L     130     L     130      5    7   26     5    5    5    6    9   15   17   18   23   25   31   33   36   43   44   48   57   57   64   68 
LCS_GDT     P     131     P     131      5    7   26     5    5    5    6    7    8   11   15   23   25   29   33   35   38   41   45   50   55   58   60 
LCS_GDT     P     132     P     132      5    7   15     5    5    5    6    8    8   11   15   23   25   29   33   35   43   43   46   51   55   58   62 
LCS_GDT     H     133     H     133      5    7   15     5    5    5    6    8   10   11   15   23   25   31   33   36   43   44   48   51   55   58   60 
LCS_GDT     L     134     L     134      3    3   15     0    3    3    4    8   10   11   17   23   25   31   34   37   43   44   48   51   55   58   61 
LCS_GDT     V     135     V     135      3    3   15     0    3    3    4    8   10   11   12   13   13   26   31   36   43   44   48   51   53   55   59 
LCS_AVERAGE  LCS_A:  17.15  (   9.28   14.23   27.95 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     17     25     29     31     31     33     34     36     38     40     44     49     50     53     58     62     68     73     75 
GDT PERCENT_CA   8.15  12.59  18.52  21.48  22.96  22.96  24.44  25.19  26.67  28.15  29.63  32.59  36.30  37.04  39.26  42.96  45.93  50.37  54.07  55.56
GDT RMS_LOCAL    0.29   0.68   0.92   1.17   1.35   1.35   1.65   1.77   2.19   2.64   2.96   4.18   4.49   4.54   4.81   5.51   6.07   6.42   6.69   6.76
GDT RMS_ALL_CA  21.23  21.94  21.83  21.57  21.37  21.37  21.45  21.41  21.40  21.17  21.07  15.25  15.17  15.17  15.05  15.28  14.74  14.68  14.65  14.68

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         21.549
LGA    K       2      K       2         18.504
LGA    F       3      F       3         12.386
LGA    L       4      L       4         11.747
LGA    T       5      T       5         15.810
LGA    T       6      T       6         14.025
LGA    N       7      N       7          9.837
LGA    F       8      F       8         13.426
LGA    L       9      L       9         18.645
LGA    K      10      K      10         19.855
LGA    C      11      C      11         19.590
LGA    S      12      S      12         20.196
LGA    V      13      V      13         22.014
LGA    K      14      K      14         20.707
LGA    A      15      A      15         21.352
LGA    C      16      C      16         16.048
LGA    D      17      D      17         13.705
LGA    T      18      T      18         14.799
LGA    S      19      S      19         15.162
LGA    N      20      N      20         14.209
LGA    D      21      D      21         19.643
LGA    N      22      N      22         18.531
LGA    F      23      F      23         14.357
LGA    P      24      P      24         10.777
LGA    L      25      L      25         13.164
LGA    Q      26      Q      26         12.587
LGA    Y      27      Y      27         10.204
LGA    D      28      D      28         10.320
LGA    G      29      G      29          8.027
LGA    S      30      S      30         12.210
LGA    K      31      K      31         13.363
LGA    C      32      C      32         10.285
LGA    Q      33      Q      33          7.841
LGA    L      34      L      34          7.282
LGA    V      35      V      35          6.304
LGA    Q      36      Q      36          2.761
LGA    D      37      D      37          3.962
LGA    E      38      E      38          3.191
LGA    S      39      S      39          3.130
LGA    I      40      I      40          1.581
LGA    E      41      E      41          1.143
LGA    F      42      F      42          1.823
LGA    N      43      N      43          1.747
LGA    P      44      P      44          2.240
LGA    E      45      E      45          2.397
LGA    F      46      F      46          1.589
LGA    L      47      L      47          0.825
LGA    L      48      L      48          1.491
LGA    N      49      N      49          1.090
LGA    I      50      I      50          1.064
LGA    V      51      V      51          1.437
LGA    D      52      D      52          1.617
LGA    R      53      R      53          1.690
LGA    V      54      V      54          2.040
LGA    D      55      D      55          1.215
LGA    W      56      W      56          0.703
LGA    P      57      P      57          0.927
LGA    A      58      A      58          1.168
LGA    V      59      V      59          0.685
LGA    L      60      L      60          0.831
LGA    T      61      T      61          1.075
LGA    V      62      V      62          1.234
LGA    A      63      A      63          0.764
LGA    A      64      A      64          1.188
LGA    E      65      E      65          1.055
LGA    L      66      L      66          0.471
LGA    G      67      G      67          1.350
LGA    N      68      N      68          1.190
LGA    N      69      N      69          4.950
LGA    A      70      A      70          3.804
LGA    L      71      L      71          5.987
LGA    P      72      P      72          9.518
LGA    P      73      P      73         12.484
LGA    T      74      T      74         14.546
LGA    K      75      K      75         13.796
LGA    P      76      P      76         17.710
LGA    S      77      S      77         19.047
LGA    F      78      F      78         22.234
LGA    P      79      P      79         27.403
LGA    S      80      S      80         27.577
LGA    S      81      S      81         33.093
LGA    I      82      I      82         32.410
LGA    Q      83      Q      83         36.584
LGA    E      84      E      84         33.242
LGA    L      85      L      85         27.330
LGA    T      86      T      86         25.626
LGA    D      87      D      87         24.388
LGA    D      88      D      88         17.598
LGA    D      89      D      89         17.326
LGA    M      90      M      90         20.694
LGA    A      91      A      91         18.282
LGA    I      92      I      92         12.473
LGA    L      93      L      93         14.502
LGA    N      94      N      94         18.578
LGA    D      95      D      95         16.014
LGA    L      96      L      96         11.854
LGA    H      97      H      97         15.407
LGA    T      98      T      98         19.962
LGA    L      99      L      99         17.672
LGA    L     100      L     100         14.227
LGA    L     101      L     101         18.135
LGA    Q     102      Q     102         22.860
LGA    T     103      T     103         22.374
LGA    S     104      S     104         26.556
LGA    I     105      I     105         27.967
LGA    A     106      A     106         32.232
LGA    E     107      E     107         34.106
LGA    G     108      G     108         33.269
LGA    E     109      E     109         37.442
LGA    M     110      M     110         35.136
LGA    K     111      K     111         39.532
LGA    C     112      C     112         38.220
LGA    R     113      R     113         39.309
LGA    N     114      N     114         40.717
LGA    C     115      C     115         45.321
LGA    G     116      G     116         46.745
LGA    H     117      H     117         45.734
LGA    I     118      I     118         44.655
LGA    Y     119      Y     119         39.692
LGA    Y     120      Y     120         38.605
LGA    I     121      I     121         32.512
LGA    K     122      K     122         33.677
LGA    N     123      N     123         28.781
LGA    G     124      G     124         23.752
LGA    I     125      I     125         25.652
LGA    P     126      P     126         23.591
LGA    N     127      N     127         27.315
LGA    L     128      L     128         29.287
LGA    L     129      L     129         32.598
LGA    L     130      L     130         31.684
LGA    P     131      P     131         34.344
LGA    P     132      P     132         35.521
LGA    H     133      H     133         35.002
LGA    L     134      L     134         28.717
LGA    V     135      V     135         25.570

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     34    1.77    25.556    22.902     1.817

LGA_LOCAL      RMSD =  1.771  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.396  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 14.298  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.914455 * X  +   0.386765 * Y  +   0.119103 * Z  +  27.500719
  Y_new =   0.401145 * X  +  -0.905163 * Y  +  -0.140583 * Z  +  -6.153583
  Z_new =   0.053435 * X  +   0.176334 * Y  +  -0.982879 * Z  +   9.355919 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.964076   -0.177517  [ DEG:   169.8290    -10.1710 ]
  Theta =  -0.053461   -3.088132  [ DEG:    -3.0631   -176.9369 ]
  Phi   =   0.413393   -2.728200  [ DEG:    23.6857   -156.3143 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_5                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_5.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   34   1.77  22.902    14.30
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_5
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      26.145  -6.184   2.286  1.00  0.00              
ATOM      2  CA  LYS     2      29.354  -4.569   2.517  1.00  0.00              
ATOM      3  CA  PHE     3      26.146  -3.100   3.517  1.00  0.00              
ATOM      4  CA  LEU     4      25.890  -6.087   6.006  1.00  0.00              
ATOM      5  CA  THR     5      29.160  -5.404   7.696  1.00  0.00              
ATOM      6  CA  THR     6      28.928  -1.616   7.962  1.00  0.00              
ATOM      7  CA  ASN     7      25.421  -1.724   9.465  1.00  0.00              
ATOM      8  CA  PHE     8      26.357  -4.474  11.846  1.00  0.00              
ATOM      9  CA  LEU     9      29.536  -2.819  13.208  1.00  0.00              
ATOM     10  CA  LYS    10      27.662   0.431  13.732  1.00  0.00              
ATOM     11  CA  CYS    11      24.174  -0.261  15.130  1.00  0.00              
ATOM     12  CA  SER    12      23.188   2.665  17.277  1.00  0.00              
ATOM     13  CA  VAL    13      20.814   1.503  19.964  1.00  0.00              
ATOM     14  CA  LYS    14      17.664   3.530  20.052  1.00  0.00              
ATOM     15  CA  ALA    15      15.167   1.023  21.276  1.00  0.00              
ATOM     16  CA  CYS    16      13.295  -0.062  18.210  1.00  0.00              
ATOM     17  CA  ASP    17      12.587  -3.731  18.749  1.00  0.00              
ATOM     18  CA  THR    18      12.655  -5.920  15.629  1.00  0.00              
ATOM     19  CA  SER    19      11.654  -9.451  16.687  1.00  0.00              
ATOM     20  CA  ASN    20      13.956 -11.577  14.510  1.00  0.00              
ATOM     21  CA  ASP    21      15.924 -13.371  17.265  1.00  0.00              
ATOM     22  CA  ASN    22      16.200 -10.810  19.994  1.00  0.00              
ATOM     23  CA  PHE    23      16.808  -7.285  19.522  1.00  0.00              
ATOM     24  CA  PRO    24      16.364  -4.610  17.103  1.00  0.00              
ATOM     25  CA  LEU    25      18.768  -1.603  17.315  1.00  0.00              
ATOM     26  CA  GLN    26      17.609   1.550  15.709  1.00  0.00              
ATOM     27  CA  TYR    27      20.152   3.671  13.950  1.00  0.00              
ATOM     28  CA  ASP    28      19.306   7.258  13.118  1.00  0.00              
ATOM     29  CA  GLY    29      21.842   9.211  11.088  1.00  0.00              
ATOM     30  CA  SER    30      22.628  11.801  13.802  1.00  0.00              
ATOM     31  CA  LYS    31      23.201   8.895  16.261  1.00  0.00              
ATOM     32  CA  CYS    32      25.618   7.122  13.911  1.00  0.00              
ATOM     33  CA  GLN    33      27.730  10.315  13.706  1.00  0.00              
ATOM     34  CA  LEU    34      27.788  10.710  17.511  1.00  0.00              
ATOM     35  CA  VAL    35      28.833   7.078  17.972  1.00  0.00              
ATOM     36  CA  GLN    36      31.671   7.352  15.463  1.00  0.00              
ATOM     37  CA  ASP    37      33.022  10.270  17.536  1.00  0.00              
ATOM     38  CA  GLU    38      33.009   8.865  21.063  1.00  0.00              
ATOM     39  CA  SER    39      34.848   5.660  20.025  1.00  0.00              
ATOM     40  CA  ILE    40      32.259   3.136  21.034  1.00  0.00              
ATOM     41  CA  GLU    41      34.267   0.024  21.941  1.00  0.00              
ATOM     42  CA  PHE    42      32.360  -2.918  20.557  1.00  0.00              
ATOM     43  CA  ASN    43      31.858  -5.665  23.147  1.00  0.00              
ATOM     44  CA  PRO    44      32.340  -9.119  21.544  1.00  0.00              
ATOM     45  CA  GLU    45      29.386 -10.641  23.298  1.00  0.00              
ATOM     46  CA  PHE    46      26.876  -7.942  22.331  1.00  0.00              
ATOM     47  CA  LEU    47      27.956  -8.096  18.749  1.00  0.00              
ATOM     48  CA  LEU    48      27.687 -11.827  18.588  1.00  0.00              
ATOM     49  CA  ASN    49      24.223 -11.970  20.027  1.00  0.00              
ATOM     50  CA  ILE    50      23.049  -9.277  17.701  1.00  0.00              
ATOM     51  CA  VAL    51      24.549 -10.875  14.598  1.00  0.00              
ATOM     52  CA  ASP    52      23.041 -14.306  15.223  1.00  0.00              
ATOM     53  CA  ARG    53      19.646 -12.560  15.407  1.00  0.00              
ATOM     54  CA  VAL    54      19.986 -10.178  12.528  1.00  0.00              
ATOM     55  CA  ASP    55      17.287  -9.814   9.974  1.00  0.00              
ATOM     56  CA  TRP    56      19.386  -9.035   6.948  1.00  0.00              
ATOM     57  CA  PRO    57      16.544  -7.577   4.925  1.00  0.00              
ATOM     58  CA  ALA    58      15.819  -4.918   7.591  1.00  0.00              
ATOM     59  CA  VAL    59      19.495  -3.978   7.746  1.00  0.00              
ATOM     60  CA  LEU    60      19.735  -3.676   3.939  1.00  0.00              
ATOM     61  CA  THR    61      16.874  -1.245   3.939  1.00  0.00              
ATOM     62  CA  VAL    62      18.514   0.868   6.689  1.00  0.00              
ATOM     63  CA  ALA    63      21.759   0.919   4.787  1.00  0.00              
ATOM     64  CA  ALA    64      20.038   1.988   1.595  1.00  0.00              
ATOM     65  CA  GLU    65      18.229   4.757   3.361  1.00  0.00              
ATOM     66  CA  LEU    66      21.487   6.229   4.672  1.00  0.00              
ATOM     67  CA  GLY    67      22.998   6.094   1.133  1.00  0.00              
ATOM     68  CA  ASN    68      25.990   3.904   1.733  1.00  0.00              
ATOM     69  CA  ASN    69      28.441   5.250  -0.894  1.00  0.00              
ATOM     70  CA  ALA    70      30.397   1.984  -1.051  1.00  0.00              
ATOM     71  CA  LEU    71      27.194   0.015  -1.895  1.00  0.00              
ATOM     72  CA  PRO    72      26.847  -0.958  -5.500  1.00  0.00              
ATOM     73  CA  PRO    73      24.372   0.915  -7.613  1.00  0.00              
ATOM     74  CA  THR    74      22.056  -2.044  -8.049  1.00  0.00              
ATOM     75  CA  LYS    75      21.543  -3.378  -4.483  1.00  0.00              
ATOM     76  CA  PRO    76      17.796  -3.205  -3.974  1.00  0.00              
ATOM     77  CA  SER    77      16.653  -6.658  -3.104  1.00  0.00              
ATOM     78  CA  PHE    78      18.925  -8.644  -5.444  1.00  0.00              
ATOM     79  CA  PRO    79      17.154 -11.056  -7.777  1.00  0.00              
ATOM     80  CA  SER    80      18.304 -14.522  -6.892  1.00  0.00              
ATOM     81  CA  SER    81      19.106 -15.617 -10.412  1.00  0.00              
ATOM     82  CA  ILE    82      22.851 -15.809 -10.522  1.00  0.00              
ATOM     83  CA  GLN    83      23.005 -13.533 -13.613  1.00  0.00              
ATOM     84  CA  GLU    84      21.196 -10.672 -11.843  1.00  0.00              
ATOM     85  CA  LEU    85      23.693 -10.619  -8.940  1.00  0.00              
ATOM     86  CA  THR    86      27.005 -11.053 -10.659  1.00  0.00              
ATOM     87  CA  ASP    87      28.253 -14.476  -9.538  1.00  0.00              
ATOM     88  CA  ASP    88      31.352 -13.033  -7.870  1.00  0.00              
ATOM     89  CA  ASP    89      29.195 -10.752  -5.674  1.00  0.00              
ATOM     90  CA  MET    90      26.973 -13.607  -4.631  1.00  0.00              
ATOM     91  CA  ALA    91      29.905 -15.866  -3.653  1.00  0.00              
ATOM     92  CA  ILE    92      31.501 -13.153  -1.616  1.00  0.00              
ATOM     93  CA  LEU    93      28.277 -12.284   0.115  1.00  0.00              
ATOM     94  CA  ASN    94      27.562 -15.938   1.105  1.00  0.00              
ATOM     95  CA  ASP    95      31.043 -16.316   2.473  1.00  0.00              
ATOM     96  CA  LEU    96      30.722 -13.126   4.547  1.00  0.00              
ATOM     97  CA  HIS    97      27.406 -14.205   5.969  1.00  0.00              
ATOM     98  CA  THR    98      28.756 -17.587   6.919  1.00  0.00              
ATOM     99  CA  LEU    99      31.854 -16.096   8.629  1.00  0.00              
ATOM    100  CA  LEU   100      29.762 -13.637  10.670  1.00  0.00              
ATOM    101  CA  LEU   101      27.365 -16.381  11.898  1.00  0.00              
ATOM    102  CA  GLN   102      30.252 -18.552  13.220  1.00  0.00              
ATOM    103  CA  THR   103      32.418 -15.973  14.861  1.00  0.00              
ATOM    104  CA  SER   104      34.434 -16.493  18.076  1.00  0.00              
ATOM    105  CA  ILE   105      35.591 -13.329  19.684  1.00  0.00              
ATOM    106  CA  ALA   106      38.678 -13.192  21.694  1.00  0.00              
ATOM    107  CA  GLU   107      39.959  -9.810  22.963  1.00  0.00              
ATOM    108  CA  GLY   108      39.891  -7.931  19.650  1.00  0.00              
ATOM    109  CA  GLU   109      40.787 -11.123  17.717  1.00  0.00              
ATOM    110  CA  MET   110      38.130 -12.697  15.516  1.00  0.00              
ATOM    111  CA  LYS   111      38.396 -16.469  15.011  1.00  0.00              
ATOM    112  CA  CYS   112      36.094 -18.216  12.573  1.00  0.00              
ATOM    113  CA  ARG   113      34.940 -21.631  13.847  1.00  0.00              
ATOM    114  CA  ASN   114      34.122 -23.096  10.465  1.00  0.00              
ATOM    115  CA  CYS   115      36.936 -22.008   8.238  1.00  0.00              
ATOM    116  CA  GLY   116      39.533 -20.882  10.700  1.00  0.00              
ATOM    117  CA  HIS   117      40.298 -17.606   9.191  1.00  0.00              
ATOM    118  CA  ILE   118      41.816 -15.368  11.611  1.00  0.00              
ATOM    119  CA  TYR   119      40.913 -11.642  11.541  1.00  0.00              
ATOM    120  CA  TYR   120      42.751  -9.129  13.642  1.00  0.00              
ATOM    121  CA  ILE   121      41.135  -5.843  14.402  1.00  0.00              
ATOM    122  CA  LYS   122      43.135  -3.379  16.410  1.00  0.00              
ATOM    123  CA  ASN   123      42.436   0.210  15.401  1.00  0.00              
ATOM    124  CA  GLY   124      38.876  -0.167  14.252  1.00  0.00              
ATOM    125  CA  ILE   125      37.335  -1.991  17.180  1.00  0.00              
ATOM    126  CA  PRO   126      34.110  -0.099  17.733  1.00  0.00              
ATOM    127  CA  ASN   127      33.544  -0.400  14.004  1.00  0.00              
ATOM    128  CA  LEU   128      34.539  -3.857  12.768  1.00  0.00              
ATOM    129  CA  LEU   129      37.593  -3.845  10.483  1.00  0.00              
ATOM    130  CA  LEU   130      38.920  -7.314   9.582  1.00  0.00              
ATOM    131  CA  PRO   131      40.551  -7.550   6.128  1.00  0.00              
ATOM    132  CA  PRO   132      39.079  -9.998   3.597  1.00  0.00              
ATOM    133  CA  HIS   133      41.825 -12.293   3.467  1.00  0.00              
ATOM    134  CA  LEU   134      37.788 -11.136   3.278  1.00  0.00              
ATOM    135  CA  VAL   135      34.619  -8.421   3.747  1.00  0.00              
TER                                                                             
END
