
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS393_2-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS393_2-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    54       168 - 221         4.93    16.53
  LONGEST_CONTINUOUS_SEGMENT:    54       169 - 222         4.97    16.44
  LONGEST_CONTINUOUS_SEGMENT:    54       172 - 225         4.94    16.49
  LONGEST_CONTINUOUS_SEGMENT:    54       173 - 226         4.97    16.36
  LCS_AVERAGE:     22.65

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       206 - 220         1.84    20.24
  LCS_AVERAGE:      6.06

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    10       181 - 190         0.89    17.50
  LONGEST_CONTINUOUS_SEGMENT:    10       182 - 191         0.86    17.31
  LONGEST_CONTINUOUS_SEGMENT:    10       225 - 234         0.25    24.91
  LCS_AVERAGE:      3.72

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      3    4    6     3    3    3    3    4    4    6    8    9   10   12   14   17   21   27   32   35   39   47   50 
LCS_GDT     I      98     I      98      3    4   10     3    3    3    3    4    6    8   10   11   14   17   20   23   28   32   38   39   43   47   55 
LCS_GDT     F      99     F      99      3    4   14     3    3    3    3    4    5    8   10   11   14   18   21   24   29   32   39   41   46   50   55 
LCS_GDT     S     100     S     100      3    4   14     3    3    3    3    4    5    6    8   11   12   15   18   23   27   31   34   39   43   47   51 
LCS_GDT     D     101     D     101      3    4   14     3    3    4    4    5    6    6    9   11   12   12   14   18   22   27   33   36   41   47   50 
LCS_GDT     A     102     A     102      3    4   14     3    3    4    4    4    6    6    9   11   12   12   14   15   19   21   25   35   41   46   50 
LCS_GDT     N     110     N     110      5    6   14     3    4    5    5    6    6    6    9   11   12   12   14   17   22   27   33   36   41   47   50 
LCS_GDT     D     111     D     111      5    6   14     4    4    5    5    6    6    7    9   11   12   12   14   17   22   27   33   36   41   47   50 
LCS_GDT     P     112     P     112      5    6   14     4    4    5    5    6    7    7    9   11   12   12   14   17   22   27   33   36   41   47   50 
LCS_GDT     F     113     F     113      5    6   14     4    4    5    5    6    6    7    8    9   12   12   14   15   17   20   25   35   41   47   50 
LCS_GDT     I     114     I     114      5    6   14     4    4    5    5    6    6    7    9   11   12   12   13   15   18   26   33   36   41   47   50 
LCS_GDT     M     115     M     115      3    6   14     3    3    3    5    7    7    9    9   11   12   12   14   17   22   27   33   36   41   47   50 
LCS_GDT     S     116     S     116      3    5   14     3    3    3    4    5    7    9    9   11   12   12   13   15   17   21   24   29   41   47   50 
LCS_GDT     Q     117     Q     117      3    5   14     3    3    3    4    7    7    9    9   11   12   12   15   19   22   27   34   37   42   47   51 
LCS_GDT     N     118     N     118      3    6   14     3    3    3    4    5    7    8   11   15   16   16   18   23   25   30   38   39   46   50   55 
LCS_GDT     E     119     E     119      3    6   14     1    3    4    5    6    7   10   12   16   18   18   18   23   25   30   38   41   46   50   55 
LCS_GDT     V     120     V     120      3    6   14     3    3    4    5    5    7   10   12   16   18   19   22   27   32   37   41   48   51   58   66 
LCS_GDT     K     121     K     121      3    6   14     3    3    4    5    6    8   10   12   16   18   23   30   37   44   49   53   59   63   66   72 
LCS_GDT     G     122     G     122      5    7   16     3    4    6    8   10   14   19   23   24   27   32   37   41   46   52   58   64   71   77   83 
LCS_GDT     K     123     K     123      5    7   16     3    4    6    8   10   10   15   16   24   26   31   35   41   46   51   58   63   71   77   83 
LCS_GDT     K     124     K     124      5    7   16     3    4    6    8   10   10   15   16   21   21   29   32   38   43   51   57   61   71   77   83 
LCS_GDT     V     125     V     125      5    7   19     3    4    6    8   10   10   15   16   21   25   29   34   41   46   51   58   64   71   77   83 
LCS_GDT     G     126     G     126      5    7   21     3    3    6    8   10   10   15   17   21   25   30   37   41   48   54   62   66   71   77   83 
LCS_GDT     V     127     V     127      4    7   21     3    4    5    6   10   10   15   16   21   25   31   37   45   50   59   62   66   71   77   83 
LCS_GDT     V     128     V     128      4    7   21     3    4    5    5    6    8   10   13   16   16   23   34   39   42   50   62   66   71   77   83 
LCS_GDT     G     129     G     129      4    6   21     3    4    5    6    7    9   10   13   16   18   20   28   42   54   59   64   66   71   77   83 
LCS_GDT     H     130     H     130      4    6   21     3    4    5    5    7    9   10   11   14   15   19   47   51   56   60   64   66   71   77   83 
LCS_GDT     F     131     F     131      4    6   21     3    3    4    5    7    9   10   11   13   15   17   18   21   24   48   51   58   66   68   71 
LCS_GDT     P     132     P     132      4    6   21     3    4    5    5    7   17   22   26   29   36   41   45   51   54   57   61   64   67   74   75 
LCS_GDT     H     133     H     133      4    5   21     3    3    4    6    8   17   23   27   34   39   43   47   51   56   60   64   66   71   77   83 
LCS_GDT     L     134     L     134      4    4   21     3    3    4    6    7    9   12   12   14   20   34   43   47   56   60   64   66   71   77   83 
LCS_GDT     E     135     E     135      4    7   21     3    3    4    6    7    8   12   12   13   19   25   34   39   55   60   64   66   71   77   83 
LCS_GDT     S     136     S     136      6    7   21     4    5    6    6    7    9   12   12   16   38   43   47   51   56   60   64   66   71   77   83 
LCS_GDT     L     137     L     137      6    7   21     4    5    6    6    7   17   22   27   33   38   43   47   51   56   60   64   66   71   77   83 
LCS_GDT     L     138     L     138      6    7   21     4    5    6    6    7   10   13   22   33   39   43   47   51   56   60   64   68   71   77   83 
LCS_GDT     E     139     E     139      6    7   21     4    5    6    6    7    7   17   25   30   36   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     P     140     P     140      6    7   21     4    5    6    6   10   15   22   26   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     I     141     I     141      6    7   21     4    5    6    7   10   15   22   26   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     C     142     C     142      4    7   21     3    4    6    8   13   15   21   25   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     D     143     D     143      4    8   21     3    4    4    7    8   14   21   26   29   40   45   46   51   56   62   64   68   70   74   80 
LCS_GDT     L     144     L     144      6    8   21     4    5    5    7    8   10   13   26   30   40   45   46   51   56   62   64   68   70   74   83 
LCS_GDT     S     145     S     145      6    8   21     4    5    5    7    8   14   21   26   32   40   45   46   51   56   62   64   68   71   77   83 
LCS_GDT     I     146     I     146      6    8   21     4    5    5    7    8   12   19   26   29   37   43   46   51   56   62   64   68   70   77   83 
LCS_GDT     L     147     L     147      6    8   21     4    5    5    8   13   15   20   24   29   37   42   45   51   56   62   64   68   70   77   83 
LCS_GDT     E     148     E     148      6    8   21     3    5    5    8   12   13   19   24   29   37   42   45   51   56   62   64   68   70   77   83 
LCS_GDT     W     149     W     149      6    8   21     3    4    5    7    8   10   15   24   27   32   41   45   51   56   61   64   68   71   77   83 
LCS_GDT     S     150     S     150      5    8   21     3    4    5    6    7    8   11   14   21   24   28   33   38   44   52   58   63   67   71   75 
LCS_GDT     P     151     P     151      4    5   23     3    4    4    4    5    6    8   10   13   24   28   33   37   45   52   56   63   67   71   75 
LCS_GDT     E     152     E     152      4    5   23     3    4    4    6    6   10   11   16   17   20   27   33   37   44   52   56   62   67   71   75 
LCS_GDT     E     153     E     153      4    5   23     3    4    4    6    6    9   11   13   16   19   28   33   36   44   51   56   61   67   71   75 
LCS_GDT     G     154     G     154      3    5   23     3    3    3    5    6    9   10   12   15   19   26   32   34   44   51   55   60   65   68   74 
LCS_GDT     D     155     D     155      3    5   24     3    4    5    5    6    9   11   13   16   24   29   33   39   45   51   59   66   71   77   83 
LCS_GDT     Y     156     Y     156      3    5   25     3    3    3    6    6   15   19   24   29   37   42   45   51   56   62   64   68   71   77   83 
LCS_GDT     P     157     P     157      3    5   27     3    4    5    6    9   14   18   23   29   37   42   45   51   56   62   64   68   70   75   83 
LCS_GDT     L     158     L     158      4    8   27     4    4    6   10   13   15   20   23   27   32   35   42   47   55   60   62   66   70   72   75 
LCS_GDT     P     159     P     159      6    8   27     4    4    6   10   13   15   20   23   27   30   33   36   45   47   51   53   58   63   67   71 
LCS_GDT     A     160     A     160      6    8   27     5    5    6   10   13   15   20   23   27   30   33   37   45   51   55   59   63   67   70   75 
LCS_GDT     S     161     S     161      6    8   27     5    5    6   10   13   15   20   23   27   32   36   42   48   55   60   62   66   70   72   75 
LCS_GDT     E     162     E     162      6    8   27     5    5    6    9   13   15   20   23   27   30   35   38   45   50   54   58   61   67   70   75 
LCS_GDT     F     163     F     163      6    8   27     5    5    6    9   13   15   20   23   27   30   35   42   47   51   55   59   65   68   71   75 
LCS_GDT     I     164     I     164      6    8   27     5    5    6    8   13   14   20   23   29   37   42   45   51   56   62   64   68   70   74   78 
LCS_GDT     L     165     L     165      4    8   27     3    4    4    6   10   12   19   23   27   32   40   45   51   56   62   63   68   70   74   80 
LCS_GDT     P     166     P     166      4    8   27     3    4    4    5    8   12   15   20   25   31   36   42   47   51   57   62   66   70   72   75 
LCS_GDT     E     167     E     167      4    8   53     3    4    4    5   10   13   18   22   26   31   39   44   51   56   60   62   66   70   72   75 
LCS_GDT     C     168     C     168      4    8   54     3    4    7    9   13   15   21   26   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     D     169     D     169      3    8   54     3    3    4    5   13   14   20   23   28   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     Y     170     Y     170      6    8   54     3    5    7   10   13   15   21   26   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     V     171     V     171      6    8   54     3    5    7   10   13   15   21   26   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     Y     172     Y     172      6    8   54     3    5    7    9   13   15   22   27   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     I     173     I     173      6    8   54     3    5    7   10   14   18   22   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     T     174     T     174      6    8   54     3    5    7   10   14   19   23   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     C     175     C     175      7    8   54     4    6    7   10   13   15   21   27   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     A     176     A     176      7    7   54     6    6    7   11   16   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     S     177     S     177      7    7   54     6    6    7   11   15   19   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     V     178     V     178      7    7   54     6    6    7   10   17   20   24   27   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     V     179     V     179      7   14   54     6    6    7    7   13   18   21   23   28   32   39   45   51   56   62   64   68   71   77   83 
LCS_GDT     D     180     D     180      7   14   54     6    6    7    7    7   10   12   15   18   26   33   38   47   54   57   62   68   71   77   83 
LCS_GDT     K     181     K     181     10   14   54     6    6   11   13   19   20   22   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     T     182     T     182     10   14   54     5    9   11   13   18   20   21   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     183     L     183     10   14   54     8    9   11   13   19   20   22   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     P     184     P     184     10   14   54     8    9   11   13   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     R     185     R     185     10   14   54     8    9   11   13   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     186     L     186     10   14   54     8    9   11   13   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     187     L     187     10   14   54     8    9   11   13   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     E     188     E     188     10   14   54     8    9   11   13   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     189     L     189     10   14   54     8    9   11   13   19   20   24   29   34   39   46   47   51   56   60   64   68   71   77   83 
LCS_GDT     S     190     S     190     10   14   54     8    9   11   12   19   20   24   27   33   38   43   47   51   56   60   64   66   71   77   83 
LCS_GDT     R     191     R     191     10   14   54     3    6   11   13   19   20   24   29   34   40   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     N     192     N     192      4   14   54     3    5   10   13   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     A     193     A     193      4   14   54     3    4    9   12   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     R     194     R     194      5   11   54     3    4    7   10   13   15   19   23   27   37   40   47   51   54   60   64   68   71   77   83 
LCS_GDT     R     195     R     195      5   11   54     4    6    8   11   15   19   24   27   34   39   44   47   51   56   62   64   68   71   77   83 
LCS_GDT     I     196     I     196      5   11   54     4    6    8   11   15   19   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     T     197     T     197      5   11   54     4    6    8   11   16   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     198     L     198      5   11   54     4    6    7   11   16   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     V     199     V     199      5   11   54     4    5    8   11   16   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     G     200     G     200      3   11   54     0    3    4   10   14   19   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     P     201     P     201      3   11   54     0    5    8   11   16   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     G     202     G     202      3   11   54     3    5    7   10   16   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     T     203     T     203      3   11   54     3    3    3    4    5   14   21   24   32   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     P     204     P     204      3   11   54     3    3    7   10   13   15   21   27   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     205     L     205      3   10   54     0    3    3    4   10   12   19   22   28   33   39   47   51   56   60   64   67   70   75   83 
LCS_GDT     A     206     A     206      8   15   54     3    4    8   12   15   20   24   26   30   39   43   47   51   56   62   64   68   71   77   83 
LCS_GDT     P     207     P     207      8   15   54     3    4    8   12   15   19   24   27   33   40   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     V     208     V     208      8   15   54     3    6    8   12   15   17   22   26   30   37   42   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     209     L     209      8   15   54     4    6    8   12   15   20   24   26   33   39   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     F     210     F     210      8   15   54     4    6    8   11   15   20   24   27   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     E     211     E     211      8   15   54     4    6    8   12   17   20   24   27   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     H     212     H     212      8   15   54     4    6    8   12   17   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     G     213     G     213      8   15   54     3    6   10   13   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     214     L     214      7   15   54     3    4    8   12   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     Q     215     Q     215      5   15   54     3    4    7   12   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     E     216     E     216      5   15   54     3    5    8   12   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     L     217     L     217      5   15   54     3    6    8   12   19   20   24   29   34   41   46   47   51   56   62   64   68   71   77   83 
LCS_GDT     S     218     S     218      5   15   54     3    4   10   13   19   20   22   28   34   38   43   47   51   56   62   64   68   71   77   83 
LCS_GDT     G     219     G     219      5   15   54     0    4    8   11   19   20   22   27   33   38   43   47   51   56   60   64   68   71   77   83 
LCS_GDT     F     220     F     220      5   15   54     2    4    8   12   15   18   21   25   30   35   41   45   51   54   57   61   66   71   77   83 
LCS_GDT     M     221     M     221      5    8   54     3    4    5    6    7   16   17   18   26   34   37   42   50   54   57   60   64   67   74   75 
LCS_GDT     V     222     V     222      4    7   54     3    4    4    5    6   10   13   18   24   34   37   43   50   54   57   60   64   67   74   75 
LCS_GDT     K     223     K     223      4    7   54     3    4    4    5    7    9   15   18   20   27   37   40   42   50   55   60   62   66   68   71 
LCS_GDT     D     224     D     224      4   11   54     3    4    4    5   11   11   12   16   22   34   37   44   50   54   57   61   64   67   71   75 
LCS_GDT     N     225     N     225     10   11   54    10   10   10   10   11   16   22   26   32   37   43   47   51   56   58   64   66   69   74   78 
LCS_GDT     A     226     A     226     10   11   54    10   10   10   10   11   11   12   15   24   30   40   45   51   54   57   59   66   71   77   83 
LCS_GDT     R     227     R     227     10   11   47    10   10   10   10   11   11   12   12   16   18   18   22   25   28   34   52   59   67   77   83 
LCS_GDT     A     228     A     228     10   11   23    10   10   10   10   11   11   12   15   23   29   38   44   51   54   57   59   64   71   77   83 
LCS_GDT     F     229     F     229     10   11   20    10   10   10   10   11   12   14   19   22   24   29   36   43   47   51   55   60   66   74   80 
LCS_GDT     R     230     R     230     10   11   20    10   10   10   10   11   11   12   12   16   18   18   22   26   32   45   53   60   65   71   80 
LCS_GDT     I     231     I     231     10   11   20    10   10   10   10   11   11   12   12   16   18   18   21   24   28   40   45   55   63   68   76 
LCS_GDT     V     232     V     232     10   11   20    10   10   10   10   11   11   12   13   16   18   22   26   33   40   49   53   55   63   69   75 
LCS_GDT     A     233     A     233     10   11   20    10   10   10   10   11   11   12   12   16   18   18   20   24   32   36   44   52   57   65   70 
LCS_GDT     G     234     G     234     10   11   20    10   10   10   10   11   11   12   12   15   18   18   22   27   33   37   42   48   52   57   66 
LCS_GDT     A     235     A     235      4   11   20     3    4    4    4    5    5    6   10   12   14   18   19   20   23   23   29   37   41   45   50 
LCS_GDT     E     236     E     236      4    5   20     3    4    4    4    5    5    7    9   11   15   17   19   23   29   32   39   45   49   57   62 
LCS_GDT     K     237     K     237      4    5   20     3    4    4    4    5    6   10   12   16   18   20   25   31   33   37   43   48   52   56   60 
LCS_GDT     V     238     V     238      3    4   20     3    3    3    4    4    6    9   11   16   19   21   25   31   33   37   43   48   52   56   60 
LCS_GDT     K     239     K     239      4    4   20     3    4    4    4    7    8   11   13   16   19   22   26   33   36   41   47   53   56   63   66 
LCS_GDT     I     240     I     240      4    4   19     3    4    4    4    5    8   11   12   16   18   22   24   29   36   41   47   52   57   63   70 
LCS_GDT     Y     241     Y     241      4    4   16     3    4    4    4    4   10   11   14   16   19   22   25   31   33   41   47   52   57   64   72 
LCS_GDT     S     242     S     242      4    5   16     1    4    4    4    7    9   12   13   16   19   22   25   31   33   37   43   48   52   58   66 
LCS_GDT     A     243     A     243      3    9   16     0    3    3    6    8   10   11   12   15   19   21   25   31   33   37   43   48   52   57   66 
LCS_GDT     G     244     G     244      4    9   16     0    4    4    7    8   10   11   12   13   18   20   25   31   33   40   44   50   55   66   72 
LCS_GDT     Q     245     Q     245      4    9   16     3    4    4    7    8   10   11   12   15   19   26   32   35   44   51   55   60   65   71   80 
LCS_GDT     K     246     K     246      4    9   15     3    5    5    7    8   10   11   13   15   28   28   34   42   46   55   60   65   69   74   80 
LCS_GDT     V     247     V     247      4    9   15     3    5    6    9   12   15   19   24   30   37   42   46   51   56   62   64   68   71   77   83 
LCS_GDT     T     248     T     248      4    9   15     3    5    5    7    8   10   19   24   29   37   42   45   51   56   62   64   68   70   74   83 
LCS_GDT     I     249     I     249      4    9   15     3    4    5    7    8   10   11   12   13   13   21   25   42   51   57   62   66   70   74   77 
LCS_GDT     K     250     K     250      4    9   15     3    5    5    7    8   10   11   12   13   13   13   21   23   27   34   40   45   55   58   63 
LCS_GDT     K     251     K     251      4    9   15     3    5    5    7    8   10   11   12   13   13   13   13   16   18   21   23   31   31   31   37 
LCS_AVERAGE  LCS_A:  10.81  (   3.72    6.06   22.65 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     10     11     13     19     20     24     29     34     41     46     47     51     56     62     64     68     71     77     83 
GDT PERCENT_CA   6.76   6.76   7.43   8.78  12.84  13.51  16.22  19.59  22.97  27.70  31.08  31.76  34.46  37.84  41.89  43.24  45.95  47.97  52.03  56.08
GDT RMS_LOCAL    0.25   0.25   1.07   1.30   1.79   1.84   2.42   2.91   3.21   3.70   3.93   3.98   4.27   4.61   5.14   5.17   5.55   5.88   6.42   6.70
GDT RMS_ALL_CA  24.91  24.91  16.95  16.29  16.30  16.31  17.41  16.01  15.96  17.59  17.57  17.49  17.77  16.56  17.79  16.79  17.33  16.06  15.73  15.91

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         42.157
LGA    I      98      I      98         37.795
LGA    F      99      F      99         35.230
LGA    S     100      S     100         37.975
LGA    D     101      D     101         44.392
LGA    A     102      A     102         41.518
LGA    N     110      N     110         31.770
LGA    D     111      D     111         29.034
LGA    P     112      P     112         29.125
LGA    F     113      F     113         25.939
LGA    I     114      I     114         29.068
LGA    M     115      M     115         32.715
LGA    S     116      S     116         31.926
LGA    Q     117      Q     117         27.511
LGA    N     118      N     118         29.901
LGA    E     119      E     119         29.483
LGA    V     120      V     120         23.508
LGA    K     121      K     121         19.312
LGA    G     122      G     122         14.379
LGA    K     123      K     123         14.796
LGA    K     124      K     124         15.425
LGA    V     125      V     125         12.763
LGA    G     126      G     126         10.763
LGA    V     127      V     127          9.656
LGA    V     128      V     128         11.255
LGA    G     129      G     129          9.729
LGA    H     130      H     130          8.474
LGA    F     131      F     131         12.682
LGA    P     132      P     132         10.331
LGA    H     133      H     133          5.876
LGA    L     134      L     134          8.050
LGA    E     135      E     135          8.822
LGA    S     136      S     136          6.876
LGA    L     137      L     137          7.446
LGA    L     138      L     138          5.239
LGA    E     139      E     139          7.913
LGA    P     140      P     140          8.247
LGA    I     141      I     141          9.205
LGA    C     142      C     142          8.730
LGA    D     143      D     143         11.161
LGA    L     144      L     144          9.059
LGA    S     145      S     145          9.022
LGA    I     146      I     146         10.205
LGA    L     147      L     147         11.606
LGA    E     148      E     148         11.545
LGA    W     149      W     149         12.179
LGA    S     150      S     150         15.865
LGA    P     151      P     151         18.560
LGA    E     152      E     152         17.812
LGA    E     153      E     153         19.038
LGA    G     154      G     154         16.901
LGA    D     155      D     155         12.343
LGA    Y     156      Y     156         12.250
LGA    P     157      P     157         14.865
LGA    L     158      L     158         16.629
LGA    P     159      P     159         22.257
LGA    A     160      A     160         20.208
LGA    S     161      S     161         15.668
LGA    E     162      E     162         19.918
LGA    F     163      F     163         20.321
LGA    I     164      I     164         14.013
LGA    L     165      L     165         12.914
LGA    P     166      P     166         15.783
LGA    E     167      E     167         13.981
LGA    C     168      C     168          7.072
LGA    D     169      D     169          6.237
LGA    Y     170      Y     170          5.738
LGA    V     171      V     171          5.413
LGA    Y     172      Y     172          4.478
LGA    I     173      I     173          3.816
LGA    T     174      T     174          3.421
LGA    C     175      C     175          5.518
LGA    A     176      A     176          2.544
LGA    S     177      S     177          3.816
LGA    V     178      V     178          4.465
LGA    V     179      V     179          7.375
LGA    D     180      D     180          7.907
LGA    K     181      K     181          3.887
LGA    T     182      T     182          3.973
LGA    L     183      L     183          3.948
LGA    P     184      P     184          1.936
LGA    R     185      R     185          1.129
LGA    L     186      L     186          2.863
LGA    L     187      L     187          2.812
LGA    E     188      E     188          2.278
LGA    L     189      L     189          3.109
LGA    S     190      S     190          5.321
LGA    R     191      R     191          3.444
LGA    N     192      N     192          2.741
LGA    A     193      A     193          2.718
LGA    R     194      R     194          7.820
LGA    R     195      R     195          5.095
LGA    I     196      I     196          3.848
LGA    T     197      T     197          3.039
LGA    L     198      L     198          1.844
LGA    V     199      V     199          2.397
LGA    G     200      G     200          3.885
LGA    P     201      P     201          3.112
LGA    G     202      G     202          1.856
LGA    T     203      T     203          7.087
LGA    P     204      P     204          6.258
LGA    L     205      L     205          8.889
LGA    A     206      A     206          6.995
LGA    P     207      P     207          6.552
LGA    V     208      V     208          8.023
LGA    L     209      L     209          5.886
LGA    F     210      F     210          4.272
LGA    E     211      E     211          4.574
LGA    H     212      H     212          3.521
LGA    G     213      G     213          1.018
LGA    L     214      L     214          3.321
LGA    Q     215      Q     215          3.682
LGA    E     216      E     216          3.053
LGA    L     217      L     217          2.972
LGA    S     218      S     218          4.976
LGA    G     219      G     219          6.902
LGA    F     220      F     220          9.438
LGA    M     221      M     221         11.587
LGA    V     222      V     222         11.086
LGA    K     223      K     223         13.213
LGA    D     224      D     224         10.940
LGA    N     225      N     225          7.924
LGA    A     226      A     226          9.590
LGA    R     227      R     227         11.173
LGA    A     228      A     228          9.608
LGA    F     229      F     229         14.343
LGA    R     230      R     230         17.821
LGA    I     231      I     231         17.371
LGA    V     232      V     232         18.241
LGA    A     233      A     233         24.163
LGA    G     234      G     234         26.524
LGA    A     235      A     235         27.957
LGA    E     236      E     236         25.554
LGA    K     237      K     237         28.063
LGA    V     238      V     238         26.002
LGA    K     239      K     239         22.634
LGA    I     240      I     240         23.599
LGA    Y     241      Y     241         22.263
LGA    S     242      S     242         25.418
LGA    A     243      A     243         25.307
LGA    G     244      G     244         21.023
LGA    Q     245      Q     245         17.259
LGA    K     246      K     246         13.285
LGA    V     247      V     247          7.658
LGA    T     248      T     248          9.801
LGA    I     249      I     249         10.716
LGA    K     250      K     250         15.749
LGA    K     251      K     251         19.613

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     29    2.91    19.595    16.499     0.964

LGA_LOCAL      RMSD =  2.908  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.377  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 13.544  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.053296 * X  +   0.835122 * Y  +  -0.547477 * Z  +  15.572328
  Y_new =  -0.997956 * X  +  -0.063909 * Y  +  -0.000338 * Z  +  42.174500
  Z_new =  -0.035271 * X  +   0.546340 * Y  +   0.836821 * Z  +  64.674232 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.578394   -2.563199  [ DEG:    33.1395   -146.8605 ]
  Theta =   0.035278    3.106314  [ DEG:     2.0213    177.9787 ]
  Phi   =  -1.624151    1.517442  [ DEG:   -93.0570     86.9430 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS393_2-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS393_2-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   29   2.91  16.499    13.54
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS393_2-D2
PFRMAT TS
TARGET T0321
MODEL 2
PARENT N/A
ATOM     97  CA  VAL    97      36.325  28.999  78.706  1.00 25.00           C
ATOM     98  CA  ILE    98      32.834  30.311  79.452  1.00 25.00           C
ATOM     99  CA  PHE    99      30.248  33.008  78.742  1.00 25.00           C
ATOM    100  CA  SER   100      32.592  35.188  80.846  1.00 25.00           C
ATOM    101  CA  ASP   101      35.352  34.797  78.219  1.00 25.00           C
ATOM    102  CA  ALA   102      32.895  35.787  75.454  1.00 25.00           C
ATOM    103  CA  LYS   103      31.834  38.868  77.465  1.00 25.00           C
ATOM    104  CA  ARG   104      35.505  39.841  77.958  1.00 25.00           C
ATOM    105  CA  VAL   105      36.137  39.456  74.200  1.00 25.00           C
ATOM    106  CA  GLU   106      33.092  41.650  73.439  1.00 25.00           C
ATOM    107  CA  ASP   107      34.363  44.307  75.886  1.00 25.00           C
ATOM    108  CA  ARG   108      37.812  44.224  74.223  1.00 25.00           C
ATOM    109  CA  MET   109      37.201  43.478  70.575  1.00 25.00           C
ATOM    110  CA  ASN   110      37.793  46.603  68.569  1.00 25.00           C
ATOM    111  CA  ASP   111      36.686  45.739  64.983  1.00 25.00           C
ATOM    112  CA  PRO   112      37.923  42.177  65.651  1.00 25.00           C
ATOM    113  CA  PHE   113      36.788  41.100  62.155  1.00 25.00           C
ATOM    114  CA  ILE   114      38.618  44.090  60.613  1.00 25.00           C
ATOM    115  CA  MET   115      39.731  47.668  60.949  1.00 25.00           C
ATOM    116  CA  SER   116      41.546  50.345  62.942  1.00 25.00           C
ATOM    117  CA  GLN   117      39.123  53.173  63.789  1.00 25.00           C
ATOM    118  CA  ASN   118      37.222  52.607  60.622  1.00 25.00           C
ATOM    119  CA  GLU   119      34.108  51.295  58.932  1.00 25.00           C
ATOM    120  CA  VAL   120      33.159  47.635  59.030  1.00 25.00           C
ATOM    121  CA  LYS   121      32.319  44.250  60.623  1.00 25.00           C
ATOM    122  CA  GLY   122      29.029  43.308  62.256  1.00 25.00           C
ATOM    123  CA  LYS   123      25.681  44.249  60.712  1.00 25.00           C
ATOM    124  CA  LYS   124      25.288  47.874  59.842  1.00 25.00           C
ATOM    125  CA  VAL   125      21.823  48.662  61.057  1.00 25.00           C
ATOM    126  CA  GLY   126      18.212  49.308  60.056  1.00 25.00           C
ATOM    127  CA  VAL   127      14.908  50.826  58.948  1.00 25.00           C
ATOM    128  CA  VAL   128      15.731  53.913  56.866  1.00 25.00           C
ATOM    129  CA  GLY   129      18.732  54.381  59.059  1.00 25.00           C
ATOM    130  CA  HIS   130      21.388  54.261  61.767  1.00 25.00           C
ATOM    131  CA  PHE   131      24.854  52.886  60.843  1.00 25.00           C
ATOM    132  CA  PRO   132      24.936  51.052  64.225  1.00 25.00           C
ATOM    133  CA  HIS   133      23.680  53.784  66.552  1.00 25.00           C
ATOM    134  CA  LEU   134      26.008  52.537  69.285  1.00 25.00           C
ATOM    135  CA  GLU   135      29.333  53.263  70.919  1.00 25.00           C
ATOM    136  CA  SER   136      30.384  49.616  70.896  1.00 25.00           C
ATOM    137  CA  LEU   137      27.620  47.121  70.127  1.00 25.00           C
ATOM    138  CA  LEU   138      26.139  46.439  73.549  1.00 25.00           C
ATOM    139  CA  GLU   139      26.798  49.809  75.161  1.00 25.00           C
ATOM    140  CA  PRO   140      23.526  51.284  73.775  1.00 25.00           C
ATOM    141  CA  ILE   141      22.030  49.151  76.545  1.00 25.00           C
ATOM    142  CA  CYS   142      20.914  45.545  75.999  1.00 25.00           C
ATOM    143  CA  ASP   143      17.934  43.446  74.983  1.00 25.00           C
ATOM    144  CA  LEU   144      15.568  41.650  72.564  1.00 25.00           C
ATOM    145  CA  SER   145      16.148  44.517  70.132  1.00 25.00           C
ATOM    146  CA  ILE   146      13.436  47.101  70.736  1.00 25.00           C
ATOM    147  CA  LEU   147      12.198  49.918  68.610  1.00 25.00           C
ATOM    148  CA  GLU   148       9.471  52.152  67.217  1.00 25.00           C
ATOM    149  CA  TRP   149       7.642  53.996  64.488  1.00 25.00           C
ATOM    150  CA  SER   150       3.894  53.356  65.189  1.00 25.00           C
ATOM    151  CA  PRO   151       3.977  57.007  66.132  1.00 25.00           C
ATOM    152  CA  GLU   152       5.074  59.202  63.299  1.00 25.00           C
ATOM    153  CA  GLU   153       8.599  60.735  63.480  1.00 25.00           C
ATOM    154  CA  GLY   154      10.905  57.779  62.763  1.00 25.00           C
ATOM    155  CA  ASP   155      11.626  54.742  60.515  1.00 25.00           C
ATOM    156  CA  TYR   156      14.811  54.392  62.485  1.00 25.00           C
ATOM    157  CA  PRO   157      17.372  55.700  64.904  1.00 25.00           C
ATOM    158  CA  LEU   158      16.138  53.450  67.768  1.00 25.00           C
ATOM    159  CA  PRO   159      19.439  53.179  69.689  1.00 25.00           C
ATOM    160  CA  ALA   160      18.252  49.923  71.319  1.00 25.00           C
ATOM    161  CA  SER   161      17.284  48.529  67.886  1.00 25.00           C
ATOM    162  CA  GLU   162      20.728  49.474  66.504  1.00 25.00           C
ATOM    163  CA  PHE   163      22.421  47.744  69.473  1.00 25.00           C
ATOM    164  CA  ILE   164      20.308  44.605  68.879  1.00 25.00           C
ATOM    165  CA  LEU   165      20.120  41.110  70.393  1.00 25.00           C
ATOM    166  CA  PRO   166      20.255  38.233  72.876  1.00 25.00           C
ATOM    167  CA  GLU   167      17.022  36.874  74.310  1.00 25.00           C
ATOM    168  CA  CYS   168      15.832  36.685  70.696  1.00 25.00           C
ATOM    169  CA  ASP   169      12.774  37.477  68.655  1.00 25.00           C
ATOM    170  CA  TYR   170      10.355  38.945  71.113  1.00 25.00           C
ATOM    171  CA  VAL   171      11.368  42.276  69.600  1.00 25.00           C
ATOM    172  CA  TYR   172       9.648  45.492  68.377  1.00 25.00           C
ATOM    173  CA  ILE   173       9.139  46.840  64.875  1.00 25.00           C
ATOM    174  CA  THR   174       7.411  49.791  63.189  1.00 25.00           C
ATOM    175  CA  CYS   175       4.676  51.095  60.893  1.00 25.00           C
ATOM    176  CA  ALA   176       2.635  48.728  63.107  1.00 25.00           C
ATOM    177  CA  SER   177       0.946  47.245  60.007  1.00 25.00           C
ATOM    178  CA  VAL   178       4.365  46.734  58.357  1.00 25.00           C
ATOM    179  CA  VAL   179       5.659  45.003  61.519  1.00 25.00           C
ATOM    180  CA  ASP   180       2.582  42.722  61.558  1.00 25.00           C
ATOM    181  CA  LYS   181       3.149  41.853  57.872  1.00 25.00           C
ATOM    182  CA  THR   182       6.820  41.043  58.601  1.00 25.00           C
ATOM    183  CA  LEU   183       5.770  38.800  61.523  1.00 25.00           C
ATOM    184  CA  PRO   184       3.255  36.997  59.267  1.00 25.00           C
ATOM    185  CA  ARG   185       5.970  36.474  56.617  1.00 25.00           C
ATOM    186  CA  LEU   186       8.334  35.066  59.282  1.00 25.00           C
ATOM    187  CA  LEU   187       5.589  32.687  60.495  1.00 25.00           C
ATOM    188  CA  GLU   188       4.970  31.527  56.897  1.00 25.00           C
ATOM    189  CA  LEU   189       8.721  30.918  56.422  1.00 25.00           C
ATOM    190  CA  SER   190       8.829  28.896  59.673  1.00 25.00           C
ATOM    191  CA  ARG   191       7.103  27.251  62.638  1.00 25.00           C
ATOM    192  CA  ASN   192      10.435  25.896  63.694  1.00 25.00           C
ATOM    193  CA  ALA   193      11.052  29.309  65.268  1.00 25.00           C
ATOM    194  CA  ARG   194      11.681  32.237  62.849  1.00 25.00           C
ATOM    195  CA  ARG   195      11.023  34.622  65.682  1.00 25.00           C
ATOM    196  CA  ILE   196       9.529  38.008  64.893  1.00 25.00           C
ATOM    197  CA  THR   197       8.063  40.897  66.882  1.00 25.00           C
ATOM    198  CA  LEU   198       5.437  43.574  66.404  1.00 25.00           C
ATOM    199  CA  VAL   199       5.307  47.144  67.489  1.00 25.00           C
ATOM    200  CA  GLY   200       3.046  46.884  70.499  1.00 25.00           C
ATOM    201  CA  PRO   201       0.755  49.634  69.210  1.00 25.00           C
ATOM    202  CA  GLY   202      -0.973  50.829  66.011  1.00 25.00           C
ATOM    203  CA  THR   203      -4.014  49.731  63.929  1.00 25.00           C
ATOM    204  CA  PRO   204      -4.624  46.021  63.364  1.00 25.00           C
ATOM    205  CA  LEU   205      -0.992  45.370  64.295  1.00 25.00           C
ATOM    206  CA  ALA   206       0.159  43.995  67.679  1.00 25.00           C
ATOM    207  CA  PRO   207      -2.820  41.587  67.740  1.00 25.00           C
ATOM    208  CA  VAL   208      -1.976  40.415  64.194  1.00 25.00           C
ATOM    209  CA  LEU   209       1.669  39.844  65.222  1.00 25.00           C
ATOM    210  CA  PHE   210       0.519  37.831  68.270  1.00 25.00           C
ATOM    211  CA  GLU   211      -1.766  35.716  66.042  1.00 25.00           C
ATOM    212  CA  HIS   212       1.137  35.079  63.627  1.00 25.00           C
ATOM    213  CA  GLY   213       2.462  32.396  65.965  1.00 25.00           C
ATOM    214  CA  LEU   214       5.778  34.242  66.440  1.00 25.00           C
ATOM    215  CA  GLN   215       6.806  32.846  69.792  1.00 25.00           C
ATOM    216  CA  GLU   216       5.409  36.139  71.053  1.00 25.00           C
ATOM    217  CA  LEU   217       4.990  39.917  71.305  1.00 25.00           C
ATOM    218  CA  SER   218       7.263  40.783  74.277  1.00 25.00           C
ATOM    219  CA  GLY   219       7.977  43.890  72.272  1.00 25.00           C
ATOM    220  CA  PHE   220       9.572  46.809  74.106  1.00 25.00           C
ATOM    221  CA  MET   221       8.220  49.424  71.638  1.00 25.00           C
ATOM    222  CA  VAL   222       5.319  51.502  70.323  1.00 25.00           C
ATOM    223  CA  LYS   223       6.609  54.656  72.067  1.00 25.00           C
ATOM    224  CA  ASP   224       3.719  57.125  72.218  1.00 25.00           C
ATOM    225  CA  ASN   225       0.592  58.415  73.986  1.00 25.00           C
ATOM    226  CA  ALA   226      -1.090  57.149  77.185  1.00 25.00           C
ATOM    227  CA  ARG   227      -1.430  53.655  75.653  1.00 25.00           C
ATOM    228  CA  ALA   228       2.271  53.697  74.673  1.00 25.00           C
ATOM    229  CA  PHE   229       3.227  54.739  78.232  1.00 25.00           C
ATOM    230  CA  ARG   230       1.094  51.898  79.663  1.00 25.00           C
ATOM    231  CA  ILE   231       2.780  49.406  77.293  1.00 25.00           C
ATOM    232  CA  VAL   232       6.229  50.676  78.372  1.00 25.00           C
ATOM    233  CA  ALA   233       5.246  50.289  82.052  1.00 25.00           C
ATOM    234  CA  GLY   234       4.040  46.717  81.382  1.00 25.00           C
ATOM    235  CA  ALA   235       7.343  45.907  79.620  1.00 25.00           C
ATOM    236  CA  GLU   236       9.303  47.323  82.589  1.00 25.00           C
ATOM    237  CA  LYS   237       7.221  45.205  85.007  1.00 25.00           C
ATOM    238  CA  VAL   238       7.885  42.087  82.884  1.00 25.00           C
ATOM    239  CA  LYS   239      11.637  42.851  82.890  1.00 25.00           C
ATOM    240  CA  ILE   240      11.572  43.267  86.697  1.00 25.00           C
ATOM    241  CA  TYR   241       9.743  39.921  87.055  1.00 25.00           C
ATOM    242  CA  SER   242      10.444  37.492  84.269  1.00 25.00           C
ATOM    243  CA  ALA   243       8.740  36.753  80.975  1.00 25.00           C
ATOM    244  CA  GLY   244       6.273  36.594  78.045  1.00 25.00           C
ATOM    245  CA  GLN   245       3.157  36.478  80.110  1.00 25.00           C
ATOM    246  CA  LYS   246       0.749  38.000  77.599  1.00 25.00           C
ATOM    247  CA  VAL   247      -1.442  40.913  78.643  1.00 25.00           C
ATOM    248  CA  THR   248      -4.933  39.637  79.506  1.00 25.00           C
ATOM    249  CA  ILE   249      -8.578  39.872  80.523  1.00 25.00           C
ATOM    250  CA  LYS   250     -10.704  42.410  82.386  1.00 25.00           C
ATOM    251  CA  LYS   251     -14.038  44.160  82.104  1.00 25.00           C
TER
END
