
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS393_5-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS393_5-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    52       174 - 225         4.99    17.01
  LCS_AVERAGE:     22.63

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       180 - 193         1.93    18.97
  LCS_AVERAGE:      5.94

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11       224 - 234         0.86    27.67
  LCS_AVERAGE:      3.67

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      3    3    6     3    3    3    3    3    4    5    6    8   11   11   11   17   18   22   26   31   33   40   44 
LCS_GDT     I      98     I      98      3    4    6     3    3    4    4    5    6    6    8   11   12   12   13   15   17   20   23   25   30   34   40 
LCS_GDT     F      99     F      99      3    4   14     3    3    4    4    5    6    6    8   11   12   12   13   15   18   23   28   30   33   37   40 
LCS_GDT     S     100     S     100      3    4   14     3    3    4    4    5    6    7    9   10   12   12   13   15   19   23   28   30   33   37   41 
LCS_GDT     D     101     D     101      3    4   14     3    3    4    4    5    6    8    9   11   12   12   12   13   14   14   17   17   19   22   25 
LCS_GDT     A     102     A     102      3    4   14     3    3    3    3    4    6    8    9   10   10   11   12   13   14   14   17   17   19   28   31 
LCS_GDT     N     110     N     110      6    7   17     3    5    6    7    7    9   10   14   16   17   19   22   25   30   34   39   41   43   45   48 
LCS_GDT     D     111     D     111      6    7   17     4    5    6    7    7    9   10   14   16   18   19   22   25   30   34   39   41   43   45   48 
LCS_GDT     P     112     P     112      6    7   17     4    5    6    7    7    9   10   14   16   17   19   20   25   30   34   39   41   43   45   48 
LCS_GDT     F     113     F     113      6    7   17     4    5    6    7    7    9   10   13   16   17   19   20   22   27   34   39   41   43   45   48 
LCS_GDT     I     114     I     114      6    7   17     4    5    6    7    7    9   10   14   16   18   19   22   25   30   34   39   41   43   45   48 
LCS_GDT     M     115     M     115      6    7   17     3    4    4    7    7    9   10   14   16   17   18   19   22   27   31   35   41   43   45   48 
LCS_GDT     S     116     S     116      4    7   17     3    4    6    7    7    9   10   11   14   17   18   19   21   24   26   27   35   39   45   48 
LCS_GDT     Q     117     Q     117      4    5   17     3    4    4    4    5    6    9   10   11   16   17   19   21   24   27   30   41   43   45   48 
LCS_GDT     N     118     N     118      4    5   17     3    4    4    5    6    7   10   12   16   18   20   23   25   30   34   39   42   53   62   70 
LCS_GDT     E     119     E     119      4    5   17     3    3    4    5    6    7   11   14   16   19   20   23   25   30   34   39   41   48   58   64 
LCS_GDT     V     120     V     120      4    5   17     3    3    4    5    6    6   10   14   16   19   20   23   25   30   35   47   56   71   74   79 
LCS_GDT     K     121     K     121      4    5   17     3    3    4    4    6    7   10   14   23   30   33   42   50   55   61   68   71   73   77   79 
LCS_GDT     G     122     G     122      4    8   17     3    3    6    7    9   11   15   19   23   29   32   40   50   55   61   64   68   73   77   79 
LCS_GDT     K     123     K     123      5    8   17     3    5    7    8    9   12   15   16   23   25   31   39   43   48   55   60   66   72   75   79 
LCS_GDT     K     124     K     124      5    8   17     3    5    7    8    9   12   15   16   18   25   31   32   40   42   50   55   63   68   75   79 
LCS_GDT     V     125     V     125      5    8   17     4    4    7    8    9   11   12   16   23   25   31   32   34   35   41   49   61   66   71   79 
LCS_GDT     G     126     G     126      5    8   24     4    5    7    8    9   11   12   14   23   23   31   32   34   35   41   47   54   59   66   73 
LCS_GDT     V     127     V     127      5    8   24     4    4    6    8    9   11   12   14   23   25   31   32   43   48   55   59   67   72   77   79 
LCS_GDT     V     128     V     128      4    8   24     4    4    6    8    9   11   12   14   15   22   31   32   34   47   53   59   63   72   77   79 
LCS_GDT     G     129     G     129      5    8   24     3    4    5    6    9   11   13   14   18   23   24   35   42   50   57   60   71   73   77   79 
LCS_GDT     H     130     H     130      5    8   24     3    4    5    8    9   15   22   29   33   37   41   45   50   56   61   68   71   73   77   79 
LCS_GDT     F     131     F     131      5    8   24     3    4    5    6    8   11   20   24   27   30   34   44   50   55   58   60   67   70   75   79 
LCS_GDT     P     132     P     132      5    8   24     3    4    5    6    8   14   20   26   29   34   40   45   50   55   58   60   67   70   75   79 
LCS_GDT     H     133     H     133      5    8   24     1    3    5    9   12   15   22   29   33   37   41   45   50   55   60   62   67   73   75   79 
LCS_GDT     L     134     L     134      3    8   24     3    3    4    4    6   11   13   22   26   33   41   45   49   56   61   68   71   73   77   79 
LCS_GDT     E     135     E     135      3    5   24     3    3    4    4    5    6   12   13   17   30   32   38   48   56   61   68   71   73   77   79 
LCS_GDT     S     136     S     136      3    5   24     3    3    4    5    7   11   19   29   33   37   41   45   50   56   61   68   71   73   77   79 
LCS_GDT     L     137     L     137      3    4   24     3    3    6    8   12   15   22   29   33   37   41   45   50   56   60   67   71   73   77   79 
LCS_GDT     L     138     L     138      3    6   24     3    3    4    5    6    9   12   22   31   37   41   45   52   56   61   68   71   73   77   79 
LCS_GDT     E     139     E     139      3    6   24     3    3    3    5    6    8   14   22   26   30   36   41   52   56   62   68   71   73   77   79 
LCS_GDT     P     140     P     140      4    6   24     3    4   11   13   14   15   18   23   29   35   41   48   52   56   62   68   71   73   77   79 
LCS_GDT     I     141     I     141      4    9   24     3    5    9   12   15   20   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     C     142     C     142      4    9   24     3    4    9   12   15   20   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     D     143     D     143      4    9   24     3    5    9   12   15   20   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     144     L     144      4    9   27     3    4    6    7   13   20   23   28   32   35   43   49   53   57   62   68   71   73   77   79 
LCS_GDT     S     145     S     145      4    9   28     3    4    8   10   13   20   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     I     146     I     146      4    9   28     3    4    6    7   13   19   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     147     L     147      4    9   28     3    4    8   10   11   16   20   26   29   35   44   48   53   57   62   68   71   73   77   79 
LCS_GDT     E     148     E     148      4    9   28     1    4    8   10   14   18   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     W     149     W     149      4    9   28     2    4    5    7   11   16   20   26   29   35   43   48   53   57   62   68   71   73   77   79 
LCS_GDT     S     150     S     150      4    8   28     1    3    8   10   11   16   20   23   26   28   36   42   51   56   59   63   68   72   77   79 
LCS_GDT     P     151     P     151      3    4   28     0    3    4    5    9   11   12   13   14   22   26   28   34   38   50   56   64   68   75   79 
LCS_GDT     E     152     E     152      4    6   28     4    4    5    8    9   12   16   19   22   23   26   31   34   42   50   54   64   68   75   79 
LCS_GDT     E     153     E     153      4    6   28     4    5    7    8    9   12   16   19   22   23   26   28   28   32   35   40   45   54   58   64 
LCS_GDT     G     154     G     154      4    6   28     4    4    7    8    9   12   16   19   22   23   26   28   28   32   35   41   51   56   61   69 
LCS_GDT     D     155     D     155      4    7   28     4    5    7    8    9   11   15   19   22   23   26   32   40   44   50   56   64   68   75   79 
LCS_GDT     Y     156     Y     156      6    9   28     3    4    6    7    9   13   16   19   22   23   28   35   42   49   55   59   66   69   75   79 
LCS_GDT     P     157     P     157      6    9   28     3    4    6    8   10   13   16   19   22   23   28   31   40   46   52   59   64   69   75   79 
LCS_GDT     L     158     L     158      6    9   28     4    4    6    8   11   13   16   19   22   23   26   31   39   44   51   55   62   69   72   76 
LCS_GDT     P     159     P     159      6    9   28     4    4    8   10   11   13   14   16   22   23   26   28   28   33   39   45   50   54   57   62 
LCS_GDT     A     160     A     160      6    9   28     5    5    8   10   11   13   16   19   22   23   26   31   37   43   46   53   58   65   71   76 
LCS_GDT     S     161     S     161      6    9   28     5    5    8   10   11   13   16   19   22   23   26   31   40   45   51   55   62   69   72   78 
LCS_GDT     E     162     E     162      6    9   28     5    5    8   10   11   13   16   19   22   23   26   28   28   33   41   47   50   54   57   62 
LCS_GDT     F     163     F     163      6    9   28     5    5    8   10   11   13   16   19   22   23   26   29   34   38   45   48   51   56   61   66 
LCS_GDT     I     164     I     164      6    9   28     5    5    8   10   10   11   15   18   22   25   29   36   44   47   53   59   63   69   75   78 
LCS_GDT     L     165     L     165      4    6   28     3    4    4    5    6   11   16   19   22   25   27   31   40   46   51   55   62   69   72   78 
LCS_GDT     P     166     P     166      4    6   28     3    4    5    6   11   13   16   19   22   25   27   31   40   45   51   55   62   69   72   76 
LCS_GDT     E     167     E     167      4    6   28     3    4    5    6   11   13   16   19   22   25   30   33   39   45   50   55   61   67   72   76 
LCS_GDT     C     168     C     168      4    6   50     3    4    5    9   11   13   19   24   28   34   44   49   53   56   62   68   71   73   77   79 
LCS_GDT     D     169     D     169      5    7   51     4    5    5    8    8   11   13   20   28   33   44   49   53   56   62   68   71   73   77   79 
LCS_GDT     Y     170     Y     170      5    7   51     4    5    5    8    8   11   15   21   28   34   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     V     171     V     171      5    7   51     4    5    5    8    8   11   15   19   28   34   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     Y     172     Y     172      5    7   51     4    5    5    8    9   11   15   19   28   34   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     I     173     I     173      5    7   51     3    5    5    8    9   12   15   17   24   34   42   49   53   57   62   68   71   73   77   79 
LCS_GDT     T     174     T     174      4    7   52     3    3    5    6    9   12   19   23   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     C     175     C     175      7    7   52     4    6    8    8    8   11   13   17   22   30   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     A     176     A     176      7    7   52     6    6    8    8   10   19   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     S     177     S     177      7    7   52     6    6    8    8    8   10   15   18   30   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     V     178     V     178      7    7   52     6    6    8    8   11   15   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     V     179     V     179      7   12   52     6    6    8    8   12   16   20   26   31   37   43   48   53   57   62   68   71   73   77   79 
LCS_GDT     D     180     D     180      7   14   52     6    6    8    8   10   13   20   23   25   33   38   44   51   56   62   68   71   73   77   79 
LCS_GDT     K     181     K     181     10   14   52     6    6   10   13   15   19   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     T     182     T     182     10   14   52     4    9   11   13   14   16   20   28   32   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     183     L     183     10   14   52     8    9   11   13   15   17   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     P     184     P     184     10   14   52     8    9   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     R     185     R     185     10   14   52     8    9   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     186     L     186     10   14   52     8    9   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     187     L     187     10   14   52     8    9   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     E     188     E     188     10   14   52     8    9   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     189     L     189     10   14   52     8    9   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     S     190     S     190     10   14   52     8    9   10   11   14   20   23   29   33   37   43   49   53   57   62   68   71   73   77   79 
LCS_GDT     R     191     R     191      4   14   52     3    4    5    6   10   16   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     N     192     N     192      4   14   52     3    5   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     A     193     A     193      4   14   52     3    5    9   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     R     194     R     194      4    9   52     3    3    6    8   11   15   19   25   32   37   41   48   52   57   62   68   71   73   77   79 
LCS_GDT     R     195     R     195      5    9   52     3    5    7    8   12   15   21   29   33   37   43   48   52   57   62   68   71   73   77   79 
LCS_GDT     I     196     I     196      5    9   52     3    5    6    8   12   16   22   29   33   37   43   49   53   57   62   68   71   73   77   79 
LCS_GDT     T     197     T     197      5    9   52     3    5    6    8   12   16   22   29   33   37   43   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     198     L     198      5    9   52     3    5    6    8   12   16   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     V     199     V     199      5    9   52     3    4    6    8   12   16   21   27   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     G     200     G     200      4    9   52     3    4    5    6    9   20   23   28   32   36   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     P     201     P     201      4    9   52     3    4    6    8   12   16   23   28   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     G     202     G     202      4    9   52     3    4    9   12   15   20   23   28   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     T     203     T     203      4    6   52     3    4    4    7   15   20   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     P     204     P     204      3    6   52     3    3    5    6   11   20   23   28   32   36   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     205     L     205      3   10   52     3    3    5    6   11   15   15   17   20   28   34   41   50   55   62   68   71   73   77   79 
LCS_GDT     A     206     A     206      7   12   52     3    5    7   10   11   14   15   20   25   31   35   44   50   56   61   68   71   73   77   79 
LCS_GDT     P     207     P     207      7   12   52     3    4    7   10   11   14   19   22   30   37   41   47   53   57   62   68   71   73   77   79 
LCS_GDT     V     208     V     208      7   12   52     3    5    7   10   11   15   21   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     209     L     209      7   12   52     4    5    7   10   11   16   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     F     210     F     210      7   12   52     4    5    7   10   12   15   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     E     211     E     211      7   12   52     4    5    7   10   12   15   22   29   33   37   41   49   53   57   62   68   71   73   77   79 
LCS_GDT     H     212     H     212      7   12   52     4    5    7   10   12   16   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     G     213     G     213      4   12   52     3    5   11   13   15   20   23   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     L     214     L     214      4   12   52     3    5    7   10   11   16   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     Q     215     Q     215      4   12   52     3    5    7   10   12   16   22   29   33   37   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     E     216     E     216      4   12   52     3    5    7   10   11   15   17   26   33   37   41   45   52   57   62   68   71   73   77   79 
LCS_GDT     L     217     L     217      4   12   52     3    4    5    6   10   15   15   20   32   36   41   45   50   55   61   68   71   73   77   79 
LCS_GDT     S     218     S     218      4   10   52     3    3    5    7   10   15   15   22   32   37   41   47   52   57   62   68   71   73   77   79 
LCS_GDT     G     219     G     219      4   10   52     3    4    5    7    9   15   15   18   32   37   41   48   52   57   62   68   71   73   77   79 
LCS_GDT     F     220     F     220      4   10   52     3    4    5    7    9   12   15   22   32   37   41   45   50   56   61   68   71   73   77   79 
LCS_GDT     M     221     M     221      4   10   52     3    3    5    7    9   12   15   17   20   28   36   45   50   55   58   59   61   66   74   79 
LCS_GDT     V     222     V     222      4   10   52     3    3    5    7   10   11   14   17   21   28   34   45   50   55   58   59   61   65   74   79 
LCS_GDT     K     223     K     223      3   12   52     3    3    4   10   11   11   12   18   21   28   36   44   50   54   58   59   64   69   75   79 
LCS_GDT     D     224     D     224     11   12   52     3    4    6   11   11   12   15   17   20   27   34   45   50   55   58   59   61   65   72   77 
LCS_GDT     N     225     N     225     11   12   52    10   10   10   11   11   12   15   17   29   36   39   45   50   55   58   59   64   67   72   79 
LCS_GDT     A     226     A     226     11   12   49    10   10   10   11   11   11   12   13   16   23   33   42   46   53   56   59   64   67   70   76 
LCS_GDT     R     227     R     227     11   12   22    10   10   10   11   11   11   12   13   14   17   17   17   20   22   31   50   60   63   68   76 
LCS_GDT     A     228     A     228     11   12   21    10   10   10   11   11   11   12   13   16   23   33   42   46   51   56   59   64   67   70   76 
LCS_GDT     F     229     F     229     11   12   20    10   10   10   11   11   11   12   13   14   17   20   24   27   34   45   51   58   63   69   72 
LCS_GDT     R     230     R     230     11   12   20    10   10   10   11   11   11   12   13   14   17   17   18   20   22   25   32   39   49   56   62 
LCS_GDT     I     231     I     231     11   12   20    10   10   10   11   11   11   12   13   14   17   17   18   20   22   25   34   41   50   56   62 
LCS_GDT     V     232     V     232     11   12   20    10   10   10   11   11   11   12   13   14   17   17   18   23   27   31   34   41   50   56   62 
LCS_GDT     A     233     A     233     11   12   20    10   10   10   11   11   11   12   13   14   17   17   18   20   22   28   32   37   40   44   47 
LCS_GDT     G     234     G     234     11   12   20    10   10   10   11   11   11   12   13   14   17   17   18   20   22   28   30   37   40   44   47 
LCS_GDT     A     235     A     235      4   11   20     3    4    4    4    5    5    6   13   14   17   17   17   20   21   24   27   29   32   38   44 
LCS_GDT     E     236     E     236      4    5   20     3    4    4    4    5    5    6    7   11   13   15   17   20   22   28   32   37   40   44   47 
LCS_GDT     K     237     K     237      4    5   20     3    4    4    4    6    9   11   12   13   14   15   17   20   21   28   30   37   40   44   47 
LCS_GDT     V     238     V     238      3    4   20     3    3    3    4    4    6    9   11   13   14   15   17   19   21   24   30   37   40   44   47 
LCS_GDT     K     239     K     239      3    4   20     3    3    7    8    9   10   12   12   12   14   15   16   21   25   28   33   37   40   46   50 
LCS_GDT     I     240     I     240      3    4   16     3    3    3    4    4    5   12   12   12   13   13   13   14   15   23   30   37   40   44   47 
LCS_GDT     Y     241     Y     241      3    4   16     3    3    3    3    4    5    6    7    8   10   13   13   14   15   17   22   29   34   44   47 
LCS_GDT     S     242     S     242      4    9   16     3    3    4    7    8    9   12   12   12   13   13   16   19   20   24   32   32   40   44   47 
LCS_GDT     A     243     A     243      4    9   16     3    6    7    8    9   10   12   12   12   13   13   14   17   22   28   32   37   40   44   47 
LCS_GDT     G     244     G     244      4    9   16     3    6    7    8    9   10   12   12   12   13   13   16   34   35   36   38   41   55   61   68 
LCS_GDT     Q     245     Q     245      4    9   16     3    4    7    8    9   10   12   16   23   23   27   32   37   47   53   57   65   71   74   79 
LCS_GDT     K     246     K     246      4    9   16     3    6    7    8    9   15   15   26   30   35   43   48   52   57   62   68   71   73   77   79 
LCS_GDT     V     247     V     247      5    9   16     3    4    5    9   15   20   23   28   32   35   44   49   53   57   62   68   71   73   77   79 
LCS_GDT     T     248     T     248      5    9   16     3    4    7    8    9   12   16   20   28   33   42   48   53   55   57   63   68   73   75   78 
LCS_GDT     I     249     I     249      5    9   16     3    6    7    8    9   10   12   12   12   13   27   32   38   40   51   56   60   63   66   72 
LCS_GDT     K     250     K     250      5    9   16     3    6    7    8    9   10   12   12   12   13   13   13   14   16   17   18   22   24   53   56 
LCS_GDT     K     251     K     251      5    9   16     3    6    7    8    9   10   12   12   12   13   13   13   14   15   16   17   18   22   25   28 
LCS_AVERAGE  LCS_A:  10.75  (   3.67    5.94   22.63 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     10     11     13     15     20     23     29     33     37     44     49     53     57     62     68     71     73     77     79 
GDT PERCENT_CA   6.76   6.76   7.43   8.78  10.14  13.51  15.54  19.59  22.30  25.00  29.73  33.11  35.81  38.51  41.89  45.95  47.97  49.32  52.03  53.38
GDT RMS_LOCAL    0.25   0.25   1.10   1.27   1.78   2.23   2.38   2.92   3.23   3.56   4.16   4.38   4.55   4.85   5.07   5.42   5.62   5.75   6.07   6.27
GDT RMS_ALL_CA  26.97  26.97  17.30  17.25  17.57  18.08  18.07  16.96  16.86  16.79  17.99  17.80  17.92  17.35  17.43  17.17  17.01  16.95  16.90  16.95

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         42.950
LGA    I      98      I      98         39.402
LGA    F      99      F      99         34.640
LGA    S     100      S     100         37.775
LGA    D     101      D     101         36.423
LGA    A     102      A     102         33.005
LGA    N     110      N     110         28.178
LGA    D     111      D     111         21.527
LGA    P     112      P     112         22.236
LGA    F     113      F     113         16.553
LGA    I     114      I     114         17.375
LGA    M     115      M     115         21.654
LGA    S     116      S     116         20.915
LGA    Q     117      Q     117         17.171
LGA    N     118      N     118         14.045
LGA    E     119      E     119         15.620
LGA    V     120      V     120         13.570
LGA    K     121      K     121         11.984
LGA    G     122      G     122         14.990
LGA    K     123      K     123         15.816
LGA    K     124      K     124         19.319
LGA    V     125      V     125         17.029
LGA    G     126      G     126         17.739
LGA    V     127      V     127         12.690
LGA    V     128      V     128         12.339
LGA    G     129      G     129          8.812
LGA    H     130      H     130          3.074
LGA    F     131      F     131          6.699
LGA    P     132      P     132          5.897
LGA    H     133      H     133          3.337
LGA    L     134      L     134          5.412
LGA    E     135      E     135          8.633
LGA    S     136      S     136          3.962
LGA    L     137      L     137          2.008
LGA    L     138      L     138          5.068
LGA    E     139      E     139         10.291
LGA    P     140      P     140         10.677
LGA    I     141      I     141         10.643
LGA    C     142      C     142         10.936
LGA    D     143      D     143         10.543
LGA    L     144      L     144          9.614
LGA    S     145      S     145          9.660
LGA    I     146      I     146         10.877
LGA    L     147      L     147         12.049
LGA    E     148      E     148         10.289
LGA    W     149      W     149         11.493
LGA    S     150      S     150         15.489
LGA    P     151      P     151         19.317
LGA    E     152      E     152         21.662
LGA    E     153      E     153         26.993
LGA    G     154      G     154         25.373
LGA    D     155      D     155         21.938
LGA    Y     156      Y     156         20.229
LGA    P     157      P     157         22.251
LGA    L     158      L     158         21.423
LGA    P     159      P     159         26.810
LGA    A     160      A     160         22.941
LGA    S     161      S     161         20.172
LGA    E     162      E     162         27.102
LGA    F     163      F     163         26.644
LGA    I     164      I     164         19.661
LGA    L     165      L     165         17.970
LGA    P     166      P     166         18.592
LGA    E     167      E     167         18.019
LGA    C     168      C     168         10.858
LGA    D     169      D     169         11.023
LGA    Y     170      Y     170         11.048
LGA    V     171      V     171         10.749
LGA    Y     172      Y     172         10.033
LGA    I     173      I     173          8.866
LGA    T     174      T     174          7.578
LGA    C     175      C     175          7.399
LGA    A     176      A     176          7.171
LGA    S     177      S     177          7.053
LGA    V     178      V     178          3.264
LGA    V     179      V     179          4.896
LGA    D     180      D     180          7.421
LGA    K     181      K     181          3.014
LGA    T     182      T     182          5.246
LGA    L     183      L     183          3.978
LGA    P     184      P     184          1.869
LGA    R     185      R     185          3.603
LGA    L     186      L     186          3.948
LGA    L     187      L     187          2.263
LGA    E     188      E     188          1.164
LGA    L     189      L     189          2.097
LGA    S     190      S     190          3.585
LGA    R     191      R     191          3.229
LGA    N     192      N     192          1.596
LGA    A     193      A     193          3.251
LGA    R     194      R     194          5.460
LGA    R     195      R     195          3.984
LGA    I     196      I     196          3.371
LGA    T     197      T     197          2.472
LGA    L     198      L     198          1.868
LGA    V     199      V     199          4.238
LGA    G     200      G     200          6.789
LGA    P     201      P     201          4.166
LGA    G     202      G     202          4.764
LGA    T     203      T     203          7.610
LGA    P     204      P     204          6.707
LGA    L     205      L     205          9.908
LGA    A     206      A     206          6.827
LGA    P     207      P     207          4.962
LGA    V     208      V     208          3.546
LGA    L     209      L     209          3.091
LGA    F     210      F     210          2.858
LGA    E     211      E     211          3.262
LGA    H     212      H     212          2.967
LGA    G     213      G     213          2.081
LGA    L     214      L     214          3.301
LGA    Q     215      Q     215          2.045
LGA    E     216      E     216          5.047
LGA    L     217      L     217          6.594
LGA    S     218      S     218          5.861
LGA    G     219      G     219          6.268
LGA    F     220      F     220          5.829
LGA    M     221      M     221          7.368
LGA    V     222      V     222          7.461
LGA    K     223      K     223          7.663
LGA    D     224      D     224          7.855
LGA    N     225      N     225          8.134
LGA    A     226      A     226         12.692
LGA    R     227      R     227         13.961
LGA    A     228      A     228         12.695
LGA    F     229      F     229         18.584
LGA    R     230      R     230         22.134
LGA    I     231      I     231         20.998
LGA    V     232      V     232         23.109
LGA    A     233      A     233         28.972
LGA    G     234      G     234         30.697
LGA    A     235      A     235         32.122
LGA    E     236      E     236         31.740
LGA    K     237      K     237         34.650
LGA    V     238      V     238         31.170
LGA    K     239      K     239         28.529
LGA    I     240      I     240         29.319
LGA    Y     241      Y     241         27.780
LGA    S     242      S     242         29.326
LGA    A     243      A     243         26.631
LGA    G     244      G     244         21.527
LGA    Q     245      Q     245         15.821
LGA    K     246      K     246         13.139
LGA    V     247      V     247         11.606
LGA    T     248      T     248         15.092
LGA    I     249      I     249         16.680
LGA    K     250      K     250         23.153
LGA    K     251      K     251         26.726

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     29    2.92    20.270    16.241     0.961

LGA_LOCAL      RMSD =  2.918  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.855  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 15.737  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.410917 * X  +   0.041715 * Y  +  -0.910718 * Z  +  11.983230
  Y_new =  -0.521968 * X  +   0.829784 * Y  +  -0.197505 * Z  +  44.495472
  Z_new =   0.747460 * X  +   0.556524 * Y  +   0.362746 * Z  +  66.656006 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.993152   -2.148440  [ DEG:    56.9034   -123.0966 ]
  Theta =  -0.844231   -2.297362  [ DEG:   -48.3708   -131.6292 ]
  Phi   =  -0.903881    2.237711  [ DEG:   -51.7886    128.2114 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS393_5-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS393_5-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   29   2.92  16.241    15.74
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS393_5-D2
PFRMAT TS
TARGET T0321
MODEL 5
PARENT N/A
ATOM     97  CA  VAL    97      27.721  65.666  61.367  1.00 25.00           C
ATOM     98  CA  ILE    98      24.850  63.186  61.696  1.00 25.00           C
ATOM     99  CA  PHE    99      23.940  62.987  65.437  1.00 25.00           C
ATOM    100  CA  SER   100      27.730  63.176  65.955  1.00 25.00           C
ATOM    101  CA  ASP   101      27.429  61.033  69.115  1.00 25.00           C
ATOM    102  CA  ALA   102      25.334  58.462  67.202  1.00 25.00           C
ATOM    103  CA  LYS   103      27.953  58.369  64.409  1.00 25.00           C
ATOM    104  CA  ARG   104      30.728  57.846  66.996  1.00 25.00           C
ATOM    105  CA  VAL   105      28.736  54.992  68.593  1.00 25.00           C
ATOM    106  CA  GLU   106      28.242  53.379  65.155  1.00 25.00           C
ATOM    107  CA  ASP   107      31.996  53.666  64.454  1.00 25.00           C
ATOM    108  CA  ARG   108      32.775  52.052  67.839  1.00 25.00           C
ATOM    109  CA  MET   109      35.842  49.812  68.157  1.00 25.00           C
ATOM    110  CA  ASN   110      35.079  48.355  71.569  1.00 25.00           C
ATOM    111  CA  ASP   111      31.556  47.732  72.820  1.00 25.00           C
ATOM    112  CA  PRO   112      32.557  48.262  76.478  1.00 25.00           C
ATOM    113  CA  PHE   113      30.563  45.155  77.500  1.00 25.00           C
ATOM    114  CA  ILE   114      32.283  43.118  74.751  1.00 25.00           C
ATOM    115  CA  MET   115      34.725  42.157  77.488  1.00 25.00           C
ATOM    116  CA  SER   116      35.217  43.068  81.126  1.00 25.00           C
ATOM    117  CA  GLN   117      33.996  45.703  83.597  1.00 25.00           C
ATOM    118  CA  ASN   118      30.262  45.837  84.145  1.00 25.00           C
ATOM    119  CA  GLU   119      26.472  46.278  84.674  1.00 25.00           C
ATOM    120  CA  VAL   120      23.043  44.683  84.423  1.00 25.00           C
ATOM    121  CA  LYS   121      21.617  46.902  81.630  1.00 25.00           C
ATOM    122  CA  GLY   122      19.694  47.774  78.417  1.00 25.00           C
ATOM    123  CA  LYS   123      18.284  48.882  75.099  1.00 25.00           C
ATOM    124  CA  LYS   124      16.893  52.431  74.718  1.00 25.00           C
ATOM    125  CA  VAL   125      16.181  54.320  71.533  1.00 25.00           C
ATOM    126  CA  GLY   126      15.025  56.650  68.780  1.00 25.00           C
ATOM    127  CA  VAL   127      12.002  55.091  67.039  1.00 25.00           C
ATOM    128  CA  VAL   128      10.918  56.487  63.634  1.00 25.00           C
ATOM    129  CA  GLY   129      13.308  56.722  60.651  1.00 25.00           C
ATOM    130  CA  HIS   130      15.031  53.758  62.307  1.00 25.00           C
ATOM    131  CA  PHE   131      18.687  52.693  62.613  1.00 25.00           C
ATOM    132  CA  PRO   132      20.776  51.926  65.769  1.00 25.00           C
ATOM    133  CA  HIS   133      21.634  50.847  69.331  1.00 25.00           C
ATOM    134  CA  LEU   134      21.705  52.957  72.518  1.00 25.00           C
ATOM    135  CA  GLU   135      24.441  54.150  74.875  1.00 25.00           C
ATOM    136  CA  SER   136      25.619  50.548  75.189  1.00 25.00           C
ATOM    137  CA  LEU   137      23.154  47.733  74.699  1.00 25.00           C
ATOM    138  CA  LEU   138      23.455  44.567  76.706  1.00 25.00           C
ATOM    139  CA  GLU   139      23.788  42.399  79.871  1.00 25.00           C
ATOM    140  CA  PRO   140      20.735  40.264  80.391  1.00 25.00           C
ATOM    141  CA  ILE   141      17.842  42.434  81.558  1.00 25.00           C
ATOM    142  CA  CYS   142      16.146  41.918  78.175  1.00 25.00           C
ATOM    143  CA  ASP   143      17.198  40.954  74.721  1.00 25.00           C
ATOM    144  CA  LEU   144      14.461  40.550  72.147  1.00 25.00           C
ATOM    145  CA  SER   145      13.182  42.198  68.992  1.00 25.00           C
ATOM    146  CA  ILE   146      11.036  45.177  70.097  1.00 25.00           C
ATOM    147  CA  LEU   147       9.962  48.490  68.595  1.00 25.00           C
ATOM    148  CA  GLU   148       9.103  51.037  65.904  1.00 25.00           C
ATOM    149  CA  TRP   149       7.290  53.463  63.693  1.00 25.00           C
ATOM    150  CA  SER   150       4.000  55.140  64.377  1.00 25.00           C
ATOM    151  CA  PRO   151       1.622  57.718  62.909  1.00 25.00           C
ATOM    152  CA  GLU   152       1.998  60.199  65.763  1.00 25.00           C
ATOM    153  CA  GLU   153       0.041  57.531  67.660  1.00 25.00           C
ATOM    154  CA  GLY   154       2.268  55.042  69.358  1.00 25.00           C
ATOM    155  CA  ASP   155       4.955  57.701  69.024  1.00 25.00           C
ATOM    156  CA  TYR   156       7.298  54.660  68.895  1.00 25.00           C
ATOM    157  CA  PRO   157       9.272  56.720  71.476  1.00 25.00           C
ATOM    158  CA  LEU   158      11.365  53.956  73.038  1.00 25.00           C
ATOM    159  CA  PRO   159       9.076  52.124  75.500  1.00 25.00           C
ATOM    160  CA  ALA   160       9.216  48.975  73.324  1.00 25.00           C
ATOM    161  CA  SER   161      13.039  49.191  73.214  1.00 25.00           C
ATOM    162  CA  GLU   162      13.152  49.554  77.025  1.00 25.00           C
ATOM    163  CA  PHE   163      10.872  46.501  77.409  1.00 25.00           C
ATOM    164  CA  ILE   164      13.132  44.488  75.062  1.00 25.00           C
ATOM    165  CA  LEU   165      11.015  41.648  76.435  1.00 25.00           C
ATOM    166  CA  PRO   166      12.861  38.383  76.854  1.00 25.00           C
ATOM    167  CA  GLU   167       9.536  36.603  76.433  1.00 25.00           C
ATOM    168  CA  CYS   168      10.497  36.106  72.788  1.00 25.00           C
ATOM    169  CA  ASP   169       9.086  39.567  72.160  1.00 25.00           C
ATOM    170  CA  TYR   170       7.085  42.630  73.162  1.00 25.00           C
ATOM    171  CA  VAL   171       5.912  45.326  70.679  1.00 25.00           C
ATOM    172  CA  TYR   172       5.097  48.972  69.972  1.00 25.00           C
ATOM    173  CA  ILE   173       4.522  50.511  66.529  1.00 25.00           C
ATOM    174  CA  THR   174       1.340  50.865  64.512  1.00 25.00           C
ATOM    175  CA  CYS   175      -0.356  52.271  61.377  1.00 25.00           C
ATOM    176  CA  ALA   176      -2.826  49.421  62.048  1.00 25.00           C
ATOM    177  CA  SER   177      -2.188  48.012  58.544  1.00 25.00           C
ATOM    178  CA  VAL   178       1.592  48.181  59.137  1.00 25.00           C
ATOM    179  CA  VAL   179       1.173  46.362  62.481  1.00 25.00           C
ATOM    180  CA  ASP   180      -0.930  43.655  60.773  1.00 25.00           C
ATOM    181  CA  LYS   181       1.751  43.244  58.069  1.00 25.00           C
ATOM    182  CA  THR   182       4.455  42.924  60.763  1.00 25.00           C
ATOM    183  CA  LEU   183       2.367  40.276  62.578  1.00 25.00           C
ATOM    184  CA  PRO   184       1.920  38.345  59.300  1.00 25.00           C
ATOM    185  CA  ARG   185       5.694  38.494  58.670  1.00 25.00           C
ATOM    186  CA  LEU   186       6.362  37.202  62.213  1.00 25.00           C
ATOM    187  CA  LEU   187       3.887  34.332  61.659  1.00 25.00           C
ATOM    188  CA  GLU   188       5.611  33.451  58.355  1.00 25.00           C
ATOM    189  CA  LEU   189       9.018  33.457  60.103  1.00 25.00           C
ATOM    190  CA  SER   190       7.643  31.166  62.847  1.00 25.00           C
ATOM    191  CA  ARG   191      10.818  29.127  62.365  1.00 25.00           C
ATOM    192  CA  ASN   192      10.521  27.911  65.946  1.00 25.00           C
ATOM    193  CA  ALA   193       9.120  30.904  67.700  1.00 25.00           C
ATOM    194  CA  ARG   194      11.433  33.132  65.687  1.00 25.00           C
ATOM    195  CA  ARG   195      11.668  36.163  67.910  1.00 25.00           C
ATOM    196  CA  ILE   196       9.503  38.789  66.078  1.00 25.00           C
ATOM    197  CA  THR   197       8.218  41.635  68.195  1.00 25.00           C
ATOM    198  CA  LEU   198       5.339  42.817  66.108  1.00 25.00           C
ATOM    199  CA  VAL   199       3.365  46.113  66.341  1.00 25.00           C
ATOM    200  CA  GLY   200      -0.310  46.606  67.250  1.00 25.00           C
ATOM    201  CA  PRO   201      -0.879  49.898  69.155  1.00 25.00           C
ATOM    202  CA  GLY   202      -4.258  49.740  67.510  1.00 25.00           C
ATOM    203  CA  THR   203      -6.771  47.116  66.555  1.00 25.00           C
ATOM    204  CA  PRO   204      -6.722  44.225  64.021  1.00 25.00           C
ATOM    205  CA  LEU   205      -4.501  41.179  63.451  1.00 25.00           C
ATOM    206  CA  ALA   206      -1.382  41.553  65.642  1.00 25.00           C
ATOM    207  CA  PRO   207      -3.334  40.282  68.682  1.00 25.00           C
ATOM    208  CA  VAL   208      -4.572  37.275  66.660  1.00 25.00           C
ATOM    209  CA  LEU   209      -0.987  36.517  65.547  1.00 25.00           C
ATOM    210  CA  PHE   210       0.208  36.713  69.179  1.00 25.00           C
ATOM    211  CA  GLU   211      -2.588  34.329  70.255  1.00 25.00           C
ATOM    212  CA  HIS   212      -1.610  31.886  67.472  1.00 25.00           C
ATOM    213  CA  GLY   213       0.894  31.362  64.657  1.00 25.00           C
ATOM    214  CA  LEU   214       3.988  32.799  66.303  1.00 25.00           C
ATOM    215  CA  GLN   215       4.293  33.405  70.052  1.00 25.00           C
ATOM    216  CA  GLU   216       6.731  36.063  68.987  1.00 25.00           C
ATOM    217  CA  LEU   217       4.214  38.025  67.021  1.00 25.00           C
ATOM    218  CA  SER   218       3.787  40.202  70.102  1.00 25.00           C
ATOM    219  CA  GLY   219       0.762  42.530  70.589  1.00 25.00           C
ATOM    220  CA  PHE   220       1.289  45.690  72.611  1.00 25.00           C
ATOM    221  CA  MET   221       3.733  47.756  74.684  1.00 25.00           C
ATOM    222  CA  VAL   222       1.800  50.788  73.452  1.00 25.00           C
ATOM    223  CA  LYS   223       0.223  54.202  74.032  1.00 25.00           C
ATOM    224  CA  ASP   224       1.176  55.359  77.469  1.00 25.00           C
ATOM    225  CA  ASN   225      -1.890  55.577  79.720  1.00 25.00           C
ATOM    226  CA  ALA   226      -4.661  52.951  80.021  1.00 25.00           C
ATOM    227  CA  ARG   227      -3.019  50.866  77.259  1.00 25.00           C
ATOM    228  CA  ALA   228       0.355  51.098  79.056  1.00 25.00           C
ATOM    229  CA  PHE   229      -1.286  49.983  82.333  1.00 25.00           C
ATOM    230  CA  ARG   230      -2.917  47.020  80.538  1.00 25.00           C
ATOM    231  CA  ILE   231       0.463  46.045  79.023  1.00 25.00           C
ATOM    232  CA  VAL   232       2.093  46.229  82.484  1.00 25.00           C
ATOM    233  CA  ALA   233      -0.680  44.022  83.935  1.00 25.00           C
ATOM    234  CA  GLY   234      -0.174  41.487  81.109  1.00 25.00           C
ATOM    235  CA  ALA   235       3.597  41.456  81.779  1.00 25.00           C
ATOM    236  CA  GLU   236       2.954  40.884  85.511  1.00 25.00           C
ATOM    237  CA  LYS   237       0.580  37.994  84.684  1.00 25.00           C
ATOM    238  CA  VAL   238       3.220  36.452  82.378  1.00 25.00           C
ATOM    239  CA  LYS   239       5.851  36.759  85.145  1.00 25.00           C
ATOM    240  CA  ILE   240       3.469  35.077  87.629  1.00 25.00           C
ATOM    241  CA  TYR   241       2.839  32.236  85.139  1.00 25.00           C
ATOM    242  CA  SER   242       1.041  32.309  81.736  1.00 25.00           C
ATOM    243  CA  ALA   243       1.112  33.745  78.260  1.00 25.00           C
ATOM    244  CA  GLY   244      -2.135  35.534  77.497  1.00 25.00           C
ATOM    245  CA  GLN   245      -3.359  39.117  77.816  1.00 25.00           C
ATOM    246  CA  LYS   246      -5.434  42.008  76.540  1.00 25.00           C
ATOM    247  CA  VAL   247      -8.002  44.131  74.853  1.00 25.00           C
ATOM    248  CA  THR   248     -11.389  44.915  76.319  1.00 25.00           C
ATOM    249  CA  ILE   249     -13.995  46.451  78.628  1.00 25.00           C
ATOM    250  CA  LYS   250     -16.828  48.979  78.161  1.00 25.00           C
ATOM    251  CA  LYS   251     -19.700  49.637  80.558  1.00 25.00           C
TER
END
