
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS599_1-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS599_1-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    85       138 - 222         4.88    15.96
  LONGEST_CONTINUOUS_SEGMENT:    85       139 - 223         4.93    15.94
  LONGEST_CONTINUOUS_SEGMENT:    85       140 - 224         4.99    15.92
  LCS_AVERAGE:     43.82

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29       206 - 234         1.96    19.61
  LCS_AVERAGE:     11.80

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18       160 - 177         0.92    15.77
  LCS_AVERAGE:      6.25

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      3    5   13     3    3    8   11   14   17   19   22   24   28   32   37   38   41   45   58   58   61   63   66 
LCS_GDT     I      98     I      98      4    5   13     3    4    5    7    9   11   12   14   20   23   25   28   30   31   34   37   42   44   47   50 
LCS_GDT     F      99     F      99      4    5   15     3    4    5    5    5    5    5   10   11   16   19   23   27   29   30   37   42   44   45   47 
LCS_GDT     S     100     S     100      4    5   23     3    4    5    5    5    5    5    7    8   11   15   19   26   28   30   32   34   36   40   41 
LCS_GDT     D     101     D     101      4    5   23     3    4    5    5    5    6    8   11   13   16   19   23   26   28   30   32   34   36   40   41 
LCS_GDT     A     102     A     102      3    5   23     3    3    4    4    5    6    8    9   12   16   19   23   26   28   30   32   34   36   40   41 
LCS_GDT     N     110     N     110      3   11   23     3    3    5    7   12   16   18   19   19   22   23   26   27   31   36   38   41   44   48   51 
LCS_GDT     D     111     D     111      7   14   23     7    7    8   11   13   15   17   19   19   20   23   26   27   30   33   36   41   44   48   51 
LCS_GDT     P     112     P     112      7   14   23     7    7    9   11   13   15   18   19   19   19   23   26   27   29   32   35   41   44   48   52 
LCS_GDT     F     113     F     113      7   14   23     7    7    9   11   13   16   18   19   19   20   23   26   27   30   33   36   41   44   48   52 
LCS_GDT     I     114     I     114      7   14   23     7    7    9   11   13   16   18   19   19   20   23   26   27   29   31   35   41   44   47   49 
LCS_GDT     M     115     M     115      7   14   23     7    7    9   11   13   16   18   19   19   19   21   24   26   29   31   33   41   44   47   49 
LCS_GDT     S     116     S     116      7   14   23     7    7    9   11   13   16   18   19   19   19   21   24   26   29   31   34   41   44   47   49 
LCS_GDT     Q     117     Q     117      7   14   23     7    7    9   11   13   16   18   19   19   19   21   24   26   29   31   33   41   44   47   49 
LCS_GDT     N     118     N     118      5   14   23     5    5    9   11   13   16   18   19   19   19   20   23   26   28   30   32   34   39   40   41 
LCS_GDT     E     119     E     119      7   14   23     5    6    9   11   13   16   18   19   19   19   20   23   26   28   30   32   35   39   40   42 
LCS_GDT     V     120     V     120      7   14   23     5    6    7   11   13   16   18   19   19   19   20   23   26   28   30   32   35   39   41   49 
LCS_GDT     K     121     K     121      7   14   23     3    6    7    8   12   16   18   19   19   19   20   23   26   28   30   32   35   39   41   49 
LCS_GDT     G     122     G     122      8   14   23     3    6    8    9   12   16   18   19   19   19   20   23   26   28   30   32   35   39   41   49 
LCS_GDT     K     123     K     123      8   14   23     4    7    8    9   12   16   18   19   19   19   20   23   26   28   30   32   35   39   41   45 
LCS_GDT     K     124     K     124      8   14   23     4    7    8   11   13   16   18   19   19   19   20   23   26   28   30   32   35   39   40   45 
LCS_GDT     V     125     V     125      8   13   23     5    7    9   11   13   16   18   19   19   19   20   23   26   28   30   32   35   40   44   49 
LCS_GDT     G     126     G     126      8   13   23     5    7    8   11   13   16   18   19   19   19   20   21   25   28   30   32   34   36   40   49 
LCS_GDT     V     127     V     127      8   13   23     5    7    8    9   12   16   18   19   19   19   20   21   25   29   41   43   65   68   81   85 
LCS_GDT     V     128     V     128      8   13   23     5    7    8    9   12   16   18   19   19   23   29   34   38   41   47   50   58   67   73   79 
LCS_GDT     G     129     G     129      8   14   23     5    7    8    9   11   15   17   22   23   26   29   36   41   45   47   52   65   68   73   79 
LCS_GDT     H     130     H     130      5   15   23     4    4    5   11   14   17   19   21   23   25   29   31   38   41   47   49   53   54   58   63 
LCS_GDT     F     131     F     131      5   15   23     4    4    6   11   14   17   19   21   23   25   29   34   36   40   43   47   54   57   58   63 
LCS_GDT     P     132     P     132      5   15   22     4    4    5    9   14   17   19   21   23   25   29   34   36   40   45   48   54   57   60   64 
LCS_GDT     H     133     H     133      7   15   22     6    6    9   11   14   17   19   21   23   25   29   31   35   39   45   49   54   57   58   71 
LCS_GDT     L     134     L     134      7   15   35     6    6    9   11   14   17   19   21   23   25   34   36   40   52   58   66   69   72   77   78 
LCS_GDT     E     135     E     135      8   15   73     6    6    9   11   14   17   19   21   23   25   29   41   46   55   60   66   70   75   78   83 
LCS_GDT     S     136     S     136      8   15   75     6    6    9   11   14   17   19   21   23   29   39   48   49   55   62   68   70   75   83   86 
LCS_GDT     L     137     L     137      8   15   76     6    6    9   11   14   17   19   21   27   34   44   49   59   63   70   76   80   86   92   96 
LCS_GDT     L     138     L     138      8   15   85     6    6    9   11   16   21   27   30   45   53   60   66   72   77   82   85   87   91   94   97 
LCS_GDT     E     139     E     139      8   15   85     5    6    9   11   17   21   27   37   48   54   60   66   72   77   82   85   87   91   94   97 
LCS_GDT     P     140     P     140      8   15   85     5    6    9   11   17   21   28   37   51   54   60   67   72   77   82   85   87   91   94   97 
LCS_GDT     I     141     I     141      8   15   85     5    6    9   11   17   24   34   44   52   58   64   71   76   78   82   85   87   91   94   97 
LCS_GDT     C     142     C     142      9   15   85     5    7   21   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     D     143     D     143      9   15   85     5    7   11   16   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     144     L     144      9   15   85     4    7   11   13   23   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     S     145     S     145      9   13   85     5    7   11   14   23   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     I     146     I     146      9   12   85     5    7   11   14   25   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     147     L     147      9   12   85     5    7   11   14   18   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     E     148     E     148      9   12   85     5    7   11   14   25   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     W     149     W     149      9   12   85     5    7   11   14   18   32   40   45   53   61   67   71   76   78   82   85   87   90   94   97 
LCS_GDT     S     150     S     150      9   11   85     3    7   11   13   18   29   40   45   53   61   67   71   76   78   82   84   86   90   91   94 
LCS_GDT     P     151     P     151      4   11   85     3    4    9   21   23   29   37   45   53   61   67   71   76   78   82   84   86   90   91   94 
LCS_GDT     E     152     E     152      4   11   85     4    5    9   13   18   29   31   40   51   59   67   71   74   78   79   81   83   86   88   91 
LCS_GDT     E     153     E     153      4   11   85     4    4    4    7   10   20   24   34   41   46   52   56   65   70   73   77   80   82   85   87 
LCS_GDT     G     154     G     154      4   14   85     4    4    8   11   16   20   27   34   41   46   52   61   70   76   78   80   82   85   86   88 
LCS_GDT     D     155     D     155      7   23   85     4    6   12   21   25   29   36   45   53   61   67   71   76   78   80   83   85   89   91   93 
LCS_GDT     Y     156     Y     156      7   23   85     4   11   18   24   29   35   40   45   53   61   67   71   76   78   82   85   87   90   94   97 
LCS_GDT     P     157     P     157      7   23   85     4    6   13   23   29   33   39   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     158     L     158      7   23   85     4    6    9   15   20   31   38   42   52   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     P     159     P     159      7   23   85     4    6    9   14   25   31   38   42   51   54   63   69   76   78   82   85   87   91   94   97 
LCS_GDT     A     160     A     160     18   23   85     5   10   23   26   29   33   38   45   52   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     S     161     S     161     18   23   85     5    9   24   26   29   33   38   45   52   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     E     162     E     162     18   23   85     5    5   24   26   29   33   39   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     F     163     F     163     18   23   85     5   12   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     I     164     I     164     18   23   85     5   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     165     L     165     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     P     166     P     166     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     E     167     E     167     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     C     168     C     168     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     D     169     D     169     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     Y     170     Y     170     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     V     171     V     171     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     Y     172     Y     172     18   23   85     8   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     I     173     I     173     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     T     174     T     174     18   23   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     C     175     C     175     18   23   85     4   16   24   26   29   33   39   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     A     176     A     176     18   23   85     8   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     S     177     S     177     18   23   85     5   18   24   26   29   33   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     V     178     V     178      7   23   85     5    7    8   12   18   32   35   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     V     179     V     179      7   23   85     5    7    8   13   20   32   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     D     180     D     180      7   23   85     5    7   18   24   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     K     181     K     181     11   23   85     5    9   19   24   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     T     182     T     182     11   19   85    10   10   10   13   19   29   34   44   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     183     L     183     11   13   85    10   10   10   12   14   17   29   42   51   59   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     P     184     P     184     11   13   85    10   10   20   25   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     R     185     R     185     11   13   85    10   10   10   15   22   29   39   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     186     L     186     11   13   85    10   10   10   11   19   23   28   41   52   60   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     187     L     187     11   13   85    10   10   11   12   15   22   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     E     188     E     188     11   13   85    10   13   18   24   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     189     L     189     11   13   85    10   10   10   14   17   25   34   44   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     S     190     S     190     11   13   85    10   10   10   11   14   23   28   38   47   57   64   71   76   78   82   85   87   91   94   97 
LCS_GDT     R     191     R     191     11   13   85    10   10   11   13   19   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     N     192     N     192      4   13   85     4    4   10   17   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     A     193     A     193      4   13   85     4    5   11   13   19   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     R     194     R     194      6   13   85     3    6    9   11   18   30   37   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     R     195     R     195      7   13   85     4    6   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     I     196     I     196      7   13   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     T     197     T     197      7   13   85     7   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     198     L     198      7   13   85     7   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     V     199     V     199      7   13   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     G     200     G     200      7   13   85     4    8   17   25   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     P     201     P     201      7   13   85    11   18   24   26   29   35   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     G     202     G     202      4   13   85     4    6    9   15   24   34   40   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     T     203     T     203      3    5   85     3    3    3    4    8   13   17   27   42   49   67   71   76   78   82   85   86   90   92   97 
LCS_GDT     P     204     P     204      3    5   85     3    3    5    9   15   26   38   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     205     L     205      3   12   85     3   12   24   26   29   33   39   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     A     206     A     206      8   29   85     3    7   19   24   27   28   33   44   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     P     207     P     207      8   29   85     3    7   19   24   27   28   31   41   53   60   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     V     208     V     208      8   29   85     3    7   19   24   27   28   33   44   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     209     L     209      8   29   85     5    7   19   24   27   28   34   44   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     F     210     F     210      8   29   85     5    7   11   22   27   28   30   38   47   56   64   71   76   78   82   85   87   91   94   97 
LCS_GDT     E     211     E     211      8   29   85     5    7   11   18   25   28   30   33   47   50   58   65   73   78   82   85   87   91   94   97 
LCS_GDT     H     212     H     212      8   29   85     5    7   14   24   27   28   30   33   47   50   59   68   74   78   80   85   87   91   94   97 
LCS_GDT     G     213     G     213      8   29   85     5    7   13   24   27   28   30   31   37   42   50   52   60   66   73   77   79   87   91   97 
LCS_GDT     L     214     L     214      8   29   85     5    7   14   24   27   28   30   35   47   50   60   71   76   78   82   85   87   91   94   97 
LCS_GDT     Q     215     Q     215      8   29   85     3    7   11   18   21   24   29   38   47   59   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     E     216     E     216      8   29   85     5    6   11   18   21   25   29   38   53   60   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     L     217     L     217      7   29   85     5   11   18   24   27   28   30   39   53   60   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     S     218     S     218      7   29   85     5    6   15   23   27   29   34   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     G     219     G     219     16   29   85     5   11   19   24   27   28   34   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     F     220     F     220     16   29   85     3   11   19   24   27   28   34   45   53   61   67   71   76   78   82   85   87   91   94   97 
LCS_GDT     M     221     M     221     16   29   85    11   12   19   24   27   28   30   37   47   58   65   71   76   78   82   85   87   91   94   97 
LCS_GDT     V     222     V     222     16   29   85     3   12   19   24   27   28   30   32   39   53   63   69   75   78   82   85   87   91   94   97 
LCS_GDT     K     223     K     223     16   29   85     3    7   19   24   27   28   30   31   36   43   50   61   68   75   78   85   87   91   94   97 
LCS_GDT     D     224     D     224     16   29   85     5   12   17   23   27   28   30   31   33   43   48   56   64   70   78   82   87   91   94   97 
LCS_GDT     N     225     N     225     16   29   72    11   12   19   24   27   28   30   31   33   35   42   51   57   65   70   76   83   91   94   97 
LCS_GDT     A     226     A     226     16   29   66    11   12   17   24   27   28   30   31   33   34   40   47   55   63   70   73   77   83   91   97 
LCS_GDT     R     227     R     227     16   29   66    11   12   19   24   27   28   30   31   36   43   49   55   63   70   76   82   87   91   94   97 
LCS_GDT     A     228     A     228     16   29   66    11   12   19   24   27   28   30   31   38   43   49   55   63   70   78   85   87   91   94   97 
LCS_GDT     F     229     F     229     16   29   65    11   12   19   24   27   28   30   31   33   35   47   53   59   65   70   77   83   91   94   97 
LCS_GDT     R     230     R     230     16   29   64    11   12   19   24   27   28   30   31   33   40   47   53   59   65   70   77   83   91   94   97 
LCS_GDT     I     231     I     231     16   29   64    11   12   19   24   27   28   30   31   38   43   49   54   63   70   77   85   87   91   94   97 
LCS_GDT     V     232     V     232     16   29   48    11   12   19   24   27   28   30   31   33   34   47   53   60   65   70   77   84   91   94   97 
LCS_GDT     A     233     A     233     16   29   48    11   12   19   24   27   28   30   31   33   34   37   45   56   63   70   73   74   82   88   91 
LCS_GDT     G     234     G     234     16   29   48    11   12   19   24   27   28   30   31   33   37   47   53   60   65   70   77   83   91   94   97 
LCS_GDT     A     235     A     235      4   20   48     3    3    4    5    6   12   16   22   30   34   36   36   49   53   60   68   70   74   77   84 
LCS_GDT     E     236     E     236      4   20   48     3    3    5   15   25   28   30   31   33   34   47   53   60   65   70   77   83   91   94   97 
LCS_GDT     K     237     K     237      4    6   48     3    3    4    5    8   11   16   21   30   34   38   60   68   70   78   85   87   91   94   97 
LCS_GDT     V     238     V     238      3    8   48     3    3    9   16   25   27   30   31   33   42   52   61   68   75   82   85   87   91   94   97 
LCS_GDT     K     239     K     239      5    8   48     4    4    9   13   25   27   30   36   45   55   63   69   76   77   82   85   87   91   94   97 
LCS_GDT     I     240     I     240      5    9   48     4    9   19   24   27   28   30   33   38   47   55   63   73   77   82   85   87   91   94   97 
LCS_GDT     Y     241     Y     241      5   10   48     4    5   11   11   16   19   26   31   38   43   49   54   63   71   78   85   87   91   94   97 
LCS_GDT     S     242     S     242      5   10   48     4    5    5    7    9   12   13   15   22   33   43   53   59   65   70   77   84   91   94   97 
LCS_GDT     A     243     A     243      5   10   48     4    5    5    7    9   12   13   14   16   18   20   27   34   41   47   67   73   76   85   92 
LCS_GDT     G     244     G     244      7   10   48     4    5    7    8    9   12   13   15   16   18   19   27   36   50   61   67   71   75   84   92 
LCS_GDT     Q     245     Q     245      7   10   43     3    6    7    7    9   12   13   15   16   18   19   27   36   50   59   64   69   74   83   91 
LCS_GDT     K     246     K     246      7   10   26     4    6    7    7    9   12   13   15   16   18   19   26   36   39   47   62   69   73   79   91 
LCS_GDT     V     247     V     247      7   10   26     3    6    7    8    9   12   13   15   16   18   19   21   24   26   27   28   35   49   56   60 
LCS_GDT     T     248     T     248      7   10   26     4    6    7    8    9   12   13   15   16   18   19   21   24   26   27   28   32   35   36   50 
LCS_GDT     I     249     I     249      7   10   26     4    6    7    8    9   12   13   15   16   18   19   21   23   26   27   28   32   35   36   39 
LCS_GDT     K     250     K     250      7   10   26     4    6    7    8    9   12   13   15   16   18   19   21   23   24   25   28   32   35   36   39 
LCS_GDT     K     251     K     251      0    3   24     0    0    0    3    3    3    3    3    3    6    6   10   15   19   25   25   26   26   28   36 
LCS_AVERAGE  LCS_A:  20.62  (   6.25   11.80   43.82 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     18     24     26     29     35     40     45     53     61     67     71     76     78     82     85     87     91     94     97 
GDT PERCENT_CA   7.43  12.16  16.22  17.57  19.59  23.65  27.03  30.41  35.81  41.22  45.27  47.97  51.35  52.70  55.41  57.43  58.78  61.49  63.51  65.54
GDT RMS_LOCAL    0.38   0.60   0.91   1.03   1.42   2.21   2.43   2.49   3.00   3.39   3.65   3.83   4.13   4.27   4.68   5.06   5.30   5.81   5.95   6.13
GDT RMS_ALL_CA  15.87  15.86  15.80  15.77  15.81  15.91  16.04  15.83  15.97  15.93  15.94  16.02  15.92  15.94  15.84  15.78  15.73  15.75  15.76  15.77

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         20.252
LGA    I      98      I      98         26.170
LGA    F      99      F      99         30.789
LGA    S     100      S     100         37.267
LGA    D     101      D     101         39.441
LGA    A     102      A     102         38.370
LGA    N     110      N     110         25.509
LGA    D     111      D     111         25.631
LGA    P     112      P     112         22.738
LGA    F     113      F     113         21.560
LGA    I     114      I     114         26.210
LGA    M     115      M     115         28.156
LGA    S     116      S     116         26.205
LGA    Q     117      Q     117         26.874
LGA    N     118      N     118         33.675
LGA    E     119      E     119         33.945
LGA    V     120      V     120         30.157
LGA    K     121      K     121         33.445
LGA    G     122      G     122         35.304
LGA    K     123      K     123         31.782
LGA    K     124      K     124         28.450
LGA    V     125      V     125         21.355
LGA    G     126      G     126         18.731
LGA    V     127      V     127         12.493
LGA    V     128      V     128         13.780
LGA    G     129      G     129         14.377
LGA    H     130      H     130         18.946
LGA    F     131      F     131         19.539
LGA    P     132      P     132         20.754
LGA    H     133      H     133         21.548
LGA    L     134      L     134         17.239
LGA    E     135      E     135         14.964
LGA    S     136      S     136         14.883
LGA    L     137      L     137         13.543
LGA    L     138      L     138          8.850
LGA    E     139      E     139          7.733
LGA    P     140      P     140          8.156
LGA    I     141      I     141          6.026
LGA    C     142      C     142          1.536
LGA    D     143      D     143          2.466
LGA    L     144      L     144          3.064
LGA    S     145      S     145          3.251
LGA    I     146      I     146          2.831
LGA    L     147      L     147          3.670
LGA    E     148      E     148          3.228
LGA    W     149      W     149          4.403
LGA    S     150      S     150          4.763
LGA    P     151      P     151          5.418
LGA    E     152      E     152          7.151
LGA    E     153      E     153          8.840
LGA    G     154      G     154          7.709
LGA    D     155      D     155          5.333
LGA    Y     156      Y     156          2.233
LGA    P     157      P     157          3.724
LGA    L     158      L     158          4.837
LGA    P     159      P     159          5.236
LGA    A     160      A     160          3.710
LGA    S     161      S     161          3.908
LGA    E     162      E     162          2.922
LGA    F     163      F     163          2.111
LGA    I     164      I     164          2.115
LGA    L     165      L     165          1.416
LGA    P     166      P     166          2.208
LGA    E     167      E     167          1.707
LGA    C     168      C     168          1.740
LGA    D     169      D     169          1.379
LGA    Y     170      Y     170          1.404
LGA    V     171      V     171          1.458
LGA    Y     172      Y     172          1.736
LGA    I     173      I     173          1.372
LGA    T     174      T     174          1.766
LGA    C     175      C     175          3.178
LGA    A     176      A     176          1.726
LGA    S     177      S     177          2.395
LGA    V     178      V     178          4.316
LGA    V     179      V     179          3.716
LGA    D     180      D     180          2.409
LGA    K     181      K     181          2.251
LGA    T     182      T     182          5.834
LGA    L     183      L     183          5.241
LGA    P     184      P     184          1.092
LGA    R     185      R     185          4.326
LGA    L     186      L     186          6.656
LGA    L     187      L     187          4.384
LGA    E     188      E     188          1.685
LGA    L     189      L     189          6.364
LGA    S     190      S     190          7.336
LGA    R     191      R     191          3.743
LGA    N     192      N     192          2.340
LGA    A     193      A     193          3.616
LGA    R     194      R     194          3.933
LGA    R     195      R     195          2.086
LGA    I     196      I     196          1.556
LGA    T     197      T     197          1.888
LGA    L     198      L     198          1.552
LGA    V     199      V     199          1.262
LGA    G     200      G     200          1.843
LGA    P     201      P     201          1.548
LGA    G     202      G     202          3.246
LGA    T     203      T     203          7.067
LGA    P     204      P     204          5.076
LGA    L     205      L     205          3.595
LGA    A     206      A     206          8.116
LGA    P     207      P     207          9.385
LGA    V     208      V     208          8.700
LGA    L     209      L     209          8.235
LGA    F     210      F     210         11.196
LGA    E     211      E     211         13.430
LGA    H     212      H     212         12.086
LGA    G     213      G     213         14.072
LGA    L     214      L     214          9.479
LGA    Q     215      Q     215          8.996
LGA    E     216      E     216          8.112
LGA    L     217      L     217          7.807
LGA    S     218      S     218          5.994
LGA    G     219      G     219          6.797
LGA    F     220      F     220          7.238
LGA    M     221      M     221         10.804
LGA    V     222      V     222         11.334
LGA    K     223      K     223         15.900
LGA    D     224      D     224         16.364
LGA    N     225      N     225         17.930
LGA    A     226      A     226         20.746
LGA    R     227      R     227         18.521
LGA    A     228      A     228         16.608
LGA    F     229      F     229         19.279
LGA    R     230      R     230         20.890
LGA    I     231      I     231         18.110
LGA    V     232      V     232         18.735
LGA    A     233      A     233         22.464
LGA    G     234      G     234         21.749
LGA    A     235      A     235         26.023
LGA    E     236      E     236         21.393
LGA    K     237      K     237         14.587
LGA    V     238      V     238         14.203
LGA    K     239      K     239         10.108
LGA    I     240      I     240         12.487
LGA    Y     241      Y     241         15.510
LGA    S     242      S     242         17.537
LGA    A     243      A     243         18.006
LGA    G     244      G     244         19.159
LGA    Q     245      Q     245         20.886
LGA    K     246      K     246         19.752
LGA    V     247      V     247         23.443
LGA    T     248      T     248         23.918
LGA    I     249      I     249         26.637
LGA    K     250      K     250         28.446
LGA    K     251      K     251         28.850

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     45    2.49    29.392    26.017     1.737

LGA_LOCAL      RMSD =  2.491  Number of atoms =   45  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 15.911  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 15.087  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.632036 * X  +  -0.745683 * Y  +   0.210919 * Z  +   9.361371
  Y_new =   0.126561 * X  +  -0.367846 * Y  +  -0.921234 * Z  +  35.339558
  Z_new =   0.764534 * X  +  -0.555559 * Y  +   0.326866 * Z  +  70.526093 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.038983    2.102609  [ DEG:   -59.5294    120.4706 ]
  Theta =  -0.870318   -2.271275  [ DEG:   -49.8656   -130.1344 ]
  Phi   =   2.943964   -0.197629  [ DEG:   168.6767    -11.3233 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS599_1-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS599_1-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   45   2.49  26.017    15.09
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS599_1-D2
PFRMAT TS                                                                       
TARGET T0321                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM     97  CA  VAL    97      -9.917  29.871  66.428  1.00  0.00              
ATOM     98  CA  ILE    98      -7.905  28.188  64.011  1.00  0.00              
ATOM     99  CA  PHE    99      -7.408  29.778  60.301  1.00  0.00              
ATOM    100  CA  SER   100      -6.494  27.509  58.245  1.00  0.00              
ATOM    101  CA  ASP   101      -3.828  29.081  56.080  1.00  0.00              
ATOM    102  CA  ALA   102      -4.314  32.598  57.323  1.00  0.00              
ATOM    103  CA  LYS   103      -3.828  34.958  54.450  1.00  0.00              
ATOM    104  CA  ARG   104      -7.124  36.883  54.303  1.00  0.00              
ATOM    105  CA  VAL   105      -6.388  40.535  55.125  1.00  0.00              
ATOM    106  CA  GLU   106      -8.910  41.605  57.706  1.00  0.00              
ATOM    107  CA  ASP   107     -10.067  45.141  56.783  1.00  0.00              
ATOM    108  CA  ARG   108     -10.494  46.487  60.344  1.00  0.00              
ATOM    109  CA  MET   109      -6.915  46.142  61.478  1.00  0.00              
ATOM    110  CA  ASN   110      -4.844  47.779  58.754  1.00  0.00              
ATOM    111  CA  ASP   111      -6.694  51.134  58.661  1.00  0.00              
ATOM    112  CA  PRO   112      -6.527  51.525  62.476  1.00  0.00              
ATOM    113  CA  PHE   113      -2.791  50.837  62.761  1.00  0.00              
ATOM    114  CA  ILE   114      -1.970  53.260  59.973  1.00  0.00              
ATOM    115  CA  MET   115      -4.173  56.007  61.555  1.00  0.00              
ATOM    116  CA  SER   116      -2.535  55.502  64.939  1.00  0.00              
ATOM    117  CA  GLN   117       0.968  55.774  63.460  1.00  0.00              
ATOM    118  CA  ASN   118       0.161  58.981  61.523  1.00  0.00              
ATOM    119  CA  GLU   119      -1.384  60.855  64.462  1.00  0.00              
ATOM    120  CA  VAL   120       1.505  60.133  66.700  1.00  0.00              
ATOM    121  CA  LYS   121       2.867  62.888  68.865  1.00  0.00              
ATOM    122  CA  GLY   122       2.143  61.875  72.511  1.00  0.00              
ATOM    123  CA  LYS   123       1.244  58.359  71.749  1.00  0.00              
ATOM    124  CA  LYS   124       2.290  55.588  73.957  1.00  0.00              
ATOM    125  CA  VAL   125       3.507  52.489  72.198  1.00  0.00              
ATOM    126  CA  GLY   126       3.744  49.121  74.129  1.00  0.00              
ATOM    127  CA  VAL   127       6.337  46.674  73.005  1.00  0.00              
ATOM    128  CA  VAL   128       5.848  43.042  73.877  1.00  0.00              
ATOM    129  CA  GLY   129       8.961  41.116  74.309  1.00  0.00              
ATOM    130  CA  HIS   130       8.827  37.635  75.647  1.00  0.00              
ATOM    131  CA  PHE   131       9.726  36.332  78.959  1.00  0.00              
ATOM    132  CA  PRO   132      12.534  37.739  80.898  1.00  0.00              
ATOM    133  CA  HIS   133      14.907  34.735  80.967  1.00  0.00              
ATOM    134  CA  LEU   134      14.551  34.252  77.173  1.00  0.00              
ATOM    135  CA  GLU   135      15.247  37.914  76.334  1.00  0.00              
ATOM    136  CA  SER   136      18.247  37.809  78.535  1.00  0.00              
ATOM    137  CA  LEU   137      19.607  34.614  76.833  1.00  0.00              
ATOM    138  CA  LEU   138      19.226  36.066  73.361  1.00  0.00              
ATOM    139  CA  GLU   139      21.077  39.218  74.332  1.00  0.00              
ATOM    140  CA  PRO   140      23.873  37.297  76.089  1.00  0.00              
ATOM    141  CA  ILE   141      24.578  34.972  73.209  1.00  0.00              
ATOM    142  CA  CYS   142      24.115  37.597  70.478  1.00  0.00              
ATOM    143  CA  ASP   143      22.139  37.111  67.686  1.00  0.00              
ATOM    144  CA  LEU   144      19.258  40.002  67.020  1.00  0.00              
ATOM    145  CA  SER   145      17.763  40.571  63.929  1.00  0.00              
ATOM    146  CA  ILE   146      16.254  43.649  63.453  1.00  0.00              
ATOM    147  CA  LEU   147      12.991  44.231  60.533  1.00  0.00              
ATOM    148  CA  GLU   148      12.231  47.418  59.862  1.00  0.00              
ATOM    149  CA  TRP   149       9.438  48.282  57.121  1.00  0.00              
ATOM    150  CA  SER   150      10.873  51.457  55.773  1.00  0.00              
ATOM    151  CA  PRO   151      13.739  50.850  53.297  1.00  0.00              
ATOM    152  CA  GLU   152      15.373  54.229  53.782  1.00  0.00              
ATOM    153  CA  GLU   153      15.934  54.131  57.543  1.00  0.00              
ATOM    154  CA  GLY   154      17.677  50.721  57.811  1.00  0.00              
ATOM    155  CA  ASP   155      19.387  49.889  54.519  1.00  0.00              
ATOM    156  CA  TYR   156      19.176  46.222  54.371  1.00  0.00              
ATOM    157  CA  PRO   157      19.318  44.496  50.998  1.00  0.00              
ATOM    158  CA  LEU   158      16.510  41.945  50.742  1.00  0.00              
ATOM    159  CA  PRO   159      18.773  38.896  50.437  1.00  0.00              
ATOM    160  CA  ALA   160      20.816  39.870  53.529  1.00  0.00              
ATOM    161  CA  SER   161      17.836  40.450  55.589  1.00  0.00              
ATOM    162  CA  GLU   162      16.302  37.275  54.777  1.00  0.00              
ATOM    163  CA  PHE   163      19.464  35.354  55.524  1.00  0.00              
ATOM    164  CA  ILE   164      19.695  37.101  58.886  1.00  0.00              
ATOM    165  CA  LEU   165      16.056  36.242  59.700  1.00  0.00              
ATOM    166  CA  PRO   166      16.698  32.552  59.073  1.00  0.00              
ATOM    167  CA  GLU   167      19.548  32.495  61.480  1.00  0.00              
ATOM    168  CA  CYS   168      18.461  34.305  63.853  1.00  0.00              
ATOM    169  CA  ASP   169      17.139  33.386  67.503  1.00  0.00              
ATOM    170  CA  TYR   170      15.216  36.511  68.182  1.00  0.00              
ATOM    171  CA  VAL   171      13.763  38.518  65.889  1.00  0.00              
ATOM    172  CA  TYR   172      12.121  42.463  66.226  1.00  0.00              
ATOM    173  CA  ILE   173       9.938  43.909  64.432  1.00  0.00              
ATOM    174  CA  THR   174       9.115  47.472  64.241  1.00  0.00              
ATOM    175  CA  CYS   175       6.000  49.141  63.709  1.00  0.00              
ATOM    176  CA  ALA   176       5.353  49.499  59.931  1.00  0.00              
ATOM    177  CA  SER   177       6.620  46.031  59.093  1.00  0.00              
ATOM    178  CA  VAL   178       4.483  44.300  61.742  1.00  0.00              
ATOM    179  CA  VAL   179       1.216  46.061  60.810  1.00  0.00              
ATOM    180  CA  ASP   180       1.471  46.005  57.002  1.00  0.00              
ATOM    181  CA  LYS   181       2.344  42.390  56.454  1.00  0.00              
ATOM    182  CA  THR   182       0.475  41.303  59.474  1.00  0.00              
ATOM    183  CA  LEU   183      -0.692  37.872  58.432  1.00  0.00              
ATOM    184  CA  PRO   184       2.464  36.718  56.909  1.00  0.00              
ATOM    185  CA  ARG   185       4.662  37.695  59.789  1.00  0.00              
ATOM    186  CA  LEU   186       2.473  36.278  62.501  1.00  0.00              
ATOM    187  CA  LEU   187       2.020  33.067  60.824  1.00  0.00              
ATOM    188  CA  GLU   188       5.685  32.519  60.207  1.00  0.00              
ATOM    189  CA  LEU   189       6.683  33.394  63.709  1.00  0.00              
ATOM    190  CA  SER   190       4.209  31.111  65.408  1.00  0.00              
ATOM    191  CA  ARG   191       5.165  28.126  63.318  1.00  0.00              
ATOM    192  CA  ASN   192       8.893  28.256  63.249  1.00  0.00              
ATOM    193  CA  ALA   193       9.596  28.783  66.894  1.00  0.00              
ATOM    194  CA  ARG   194      11.878  31.921  66.797  1.00  0.00              
ATOM    195  CA  ARG   195      11.023  34.061  68.860  1.00  0.00              
ATOM    196  CA  ILE   196       9.150  37.672  67.660  1.00  0.00              
ATOM    197  CA  THR   197       9.102  40.507  69.525  1.00  0.00              
ATOM    198  CA  LEU   198       6.524  43.507  68.221  1.00  0.00              
ATOM    199  CA  VAL   199       7.075  46.914  68.667  1.00  0.00              
ATOM    200  CA  GLY   200       4.727  49.407  67.486  1.00  0.00              
ATOM    201  CA  PRO   201       3.874  52.884  69.651  1.00  0.00              
ATOM    202  CA  GLY   202      -0.095  52.614  69.583  1.00  0.00              
ATOM    203  CA  THR   203      -1.602  52.165  72.860  1.00  0.00              
ATOM    204  CA  PRO   204      -4.290  49.645  72.092  1.00  0.00              
ATOM    205  CA  LEU   205      -2.064  46.843  70.803  1.00  0.00              
ATOM    206  CA  ALA   206       0.047  46.935  73.925  1.00  0.00              
ATOM    207  CA  PRO   207      -2.696  46.312  76.360  1.00  0.00              
ATOM    208  CA  VAL   208      -3.795  43.347  74.238  1.00  0.00              
ATOM    209  CA  LEU   209      -0.207  41.876  74.276  1.00  0.00              
ATOM    210  CA  PHE   210       0.042  42.236  78.095  1.00  0.00              
ATOM    211  CA  GLU   211      -3.437  40.535  78.425  1.00  0.00              
ATOM    212  CA  HIS   212      -2.049  37.614  76.335  1.00  0.00              
ATOM    213  CA  GLY   213       0.728  36.846  78.699  1.00  0.00              
ATOM    214  CA  LEU   214       3.610  38.427  76.879  1.00  0.00              
ATOM    215  CA  GLN   215       6.524  39.015  79.117  1.00  0.00              
ATOM    216  CA  GLU   216       8.448  42.082  78.901  1.00  0.00              
ATOM    217  CA  LEU   217       7.062  45.275  77.889  1.00  0.00              
ATOM    218  CA  SER   218       9.014  47.848  76.349  1.00  0.00              
ATOM    219  CA  GLY   219       7.535  51.200  76.338  1.00  0.00              
ATOM    220  CA  PHE   220       8.050  53.230  73.549  1.00  0.00              
ATOM    221  CA  MET   221       7.071  57.416  73.510  1.00  0.00              
ATOM    222  CA  VAL   222       6.414  58.657  70.669  1.00  0.00              
ATOM    223  CA  LYS   223       7.513  62.536  69.950  1.00  0.00              
ATOM    224  CA  ASP   224       6.809  63.906  67.033  1.00  0.00              
ATOM    225  CA  ASN   225       6.999  61.296  64.289  1.00  0.00              
ATOM    226  CA  ALA   226       8.736  63.326  61.699  1.00  0.00              
ATOM    227  CA  ARG   227      11.512  64.364  63.995  1.00  0.00              
ATOM    228  CA  ALA   228      12.129  60.828  65.224  1.00  0.00              
ATOM    229  CA  PHE   229      12.138  59.383  61.842  1.00  0.00              
ATOM    230  CA  ARG   230      14.656  61.918  60.534  1.00  0.00              
ATOM    231  CA  ILE   231      16.884  61.307  63.528  1.00  0.00              
ATOM    232  CA  VAL   232      16.716  57.526  63.149  1.00  0.00              
ATOM    233  CA  ALA   233      17.477  57.511  59.402  1.00  0.00              
ATOM    234  CA  GLY   234      20.405  59.824  60.014  1.00  0.00              
ATOM    235  CA  ALA   235      22.001  58.010  62.957  1.00  0.00              
ATOM    236  CA  GLU   236      21.424  60.582  65.602  1.00  0.00              
ATOM    237  CA  LYS   237      18.460  61.115  67.961  1.00  0.00              
ATOM    238  CA  VAL   238      19.432  59.782  71.278  1.00  0.00              
ATOM    239  CA  LYS   239      16.174  58.290  72.436  1.00  0.00              
ATOM    240  CA  ILE   240      15.232  56.734  69.101  1.00  0.00              
ATOM    241  CA  TYR   241      18.605  55.024  68.441  1.00  0.00              
ATOM    242  CA  SER   242      18.978  53.311  71.807  1.00  0.00              
ATOM    243  CA  ALA   243      15.483  51.780  71.758  1.00  0.00              
ATOM    244  CA  GLY   244      15.558  50.568  68.177  1.00  0.00              
ATOM    245  CA  GLN   245      19.157  49.070  67.824  1.00  0.00              
ATOM    246  CA  LYS   246      19.320  46.706  65.707  1.00  0.00              
ATOM    247  CA  VAL   247      21.983  43.547  65.742  1.00  0.00              
ATOM    248  CA  THR   248      22.421  41.548  62.735  1.00  0.00              
ATOM    249  CA  ILE   249      24.026  38.250  63.084  1.00  0.00              
ATOM    250  CA  LYS   250      26.144  36.768  60.152  1.00  0.00              
ATOM    251  CA  LYS   251      25.370  40.251  60.657  1.00  0.00              
TER                                                                             
END
