
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  142 , name T0322TS393_2
# Molecule2: number of CA atoms  142 ( 1089),  selected  142 , name T0322.pdb
# PARAMETERS: T0322TS393_2.T0322.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   133        21 - 153         4.94     8.55
  LCS_AVERAGE:     90.68

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51        59 - 109         2.00     9.09
  LONGEST_CONTINUOUS_SEGMENT:    51        60 - 110         1.99     9.05
  LCS_AVERAGE:     22.03

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        59 - 81          0.98     9.89
  LCS_AVERAGE:      6.77

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     A      12     A      12      3    6   15     0    3    4    5    6    9   10   10   10   11   12   13   15   15   15   16   27   32   34   61 
LCS_GDT     I      13     I      13      3    6   17     0    3    3    5    6    9   10   12   12   18   20   22   23   25   26   30   38   42   45   61 
LCS_GDT     P      14     P      14      5    8   17     3    5    6    7    7    9   10   13   14   15   19   22   24   25   26   37   38   42   45   46 
LCS_GDT     E      15     E      15      5    8   17     3    5    6    7    8   10   10   13   14   18   19   22   25   32   34   37   38   42   45   46 
LCS_GDT     G      16     G      16      5    8   17     3    5    6    7    8    9   10   11   12   13   14   14   16   21   24   26   29   34   35   41 
LCS_GDT     F      17     F      17      5    8  127     3    5    6    7    8    9   10   11   12   13   14   14   19   21   24   28   29   34   45   46 
LCS_GDT     S      18     S      18      5    8  128     3    4    6    7    8    9   10   11   12   13   14   15   18   22   26   32   52   54   70   83 
LCS_GDT     Q      19     Q      19      5    8  129     3    4    6    7    8    9   10   11   12   14   16   18   31   35   63   66   90  104  110  118 
LCS_GDT     L      20     L      20      5    8  129     3    4    6    7    8    9   10   11   12   13   16   18   19   25   33   47   52   83   90  112 
LCS_GDT     N      21     N      21      4    8  133     3    5    6    7    8    9   10   11   13   17   22   36   56   93  110  112  117  121  123  124 
LCS_GDT     W      22     W      22      4    7  133     3    4    4    5    6    9   10   14   51   85  106  112  117  119  122  124  125  126  126  127 
LCS_GDT     S      23     S      23      4   12  133     3   15   30   50   72   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R      24     R      24      7   13  133     3   14   37   61   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      25     G      25      7   13  133    13   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     F      26     F      26      7   13  133     4   17   37   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      27     G      27      7   13  133     4   14   37   61   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R      28     R      28      7   13  133     4   13   31   57   72   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     Q      29     Q      29      7   13  133     4   17   33   60   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     I      30     I      30      7   13  133     8   22   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      31     G      31      6   13  133     6   23   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     P      32     P      32      4   13  133     1    3    4   17   43   73   94  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L      33     L      33      4   13  133     2    8   22   48   69   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     F      34     F      34      4   13  133     4   22   41   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E      35     E      35      4   13  133     3   14   37   58   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     H      36     H      36      5   13  133     4   16   37   61   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R      37     R      37      5   10  133     3    4    6    7   17   24   47   59   73   97  106  116  122  124  125  125  125  126  126  127 
LCS_GDT     E      38     E      38      5   10  133     3    4    6    9   11   17   28   61   77   97  110  114  122  124  125  125  125  126  126  127 
LCS_GDT     G      39     G      39      5   10  133     3    6   14   34   57   74   85   98  107  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     P      40     P      40      5   42  133     3   11   29   52   67   83   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      41     G      41      3   42  133     3    3    9   16   32   41   61   87   99  106  114  120  121  124  125  125  125  126  126  127 
LCS_GDT     Q      42     Q      42      3   42  133     3    4   17   25   32   60   82   93  107  113  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A      43     A      43      4   42  133    13   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R      44     R      44      4   42  133     2   12   32   52   72   85   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L      45     L      45      4   42  133     4   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A      46     A      46      4   42  133     4   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     F      47     F      47      9   42  133     3    7   11   44   69   85   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R      48     R      48      9   42  133     3    8   30   50   72   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     V      49     V      49      9   42  133    10   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E      50     E      50      9   42  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E      51     E      51      9   42  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     H      52     H      52      9   42  133     4   24   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     H      53     H      53      9   42  133     4   22   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     T      54     T      54      9   42  133    13   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     N      55     N      55      9   42  133    10   19   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      56     G      56     21   42  133     5    7   27   46   66   83   95  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L      57     L      57     21   42  133     5   14   24   46   66   83   98  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      58     G      58     21   42  133     5    6   16   29   43   65   82   92  103  113  115  119  122  124  125  125  125  126  126  127 
LCS_GDT     N      59     N      59     23   51  133     5   16   29   48   69   83   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     C      60     C      60     23   51  133    10   25   41   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     H      61     H      61     23   51  133     8   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      62     G      62     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      63     G      63     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     M      64     M      64     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L      65     L      65     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     M      66     M      66     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     S      67     S      67     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     F      68     F      68     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A      69     A      69     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     D      70     D      70     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     M      71     M      71     23   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A      72     A      72     23   51  133     8   25   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     W      73     W      73     23   51  133     5   19   36   58   73   85   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      74     G      74     23   51  133     5   19   34   57   73   85   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R      75     R      75     23   51  133    10   22   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     I      76     I      76     23   51  133     6   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     I      77     I      77     23   51  133     6   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     S      78     S      78     23   51  133    13   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L      79     L      79     23   51  133    13   25   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     Q      80     Q      80     23   51  133     4   19   40   58   73   85   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     K      81     K      81     23   51  133     4   19   40   58   73   84   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     S      82     S      82      7   51  133     3    6   11   18   31   49   79   97  107  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     Y      83     Y      83      7   51  133     3    9   19   44   65   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     S      84     S      84      7   51  133     3    6   22   34   63   85   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     W      85     W      85     13   51  133     3   16   38   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     V      86     V      86     13   51  133     3   12   37   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     T      87     T      87     13   51  133     3   18   43   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     V      88     V      88     13   51  133     3   22   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R      89     R      89     13   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L      90     L      90     13   51  133    14   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     M      91     M      91     13   51  133     6   20   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     C      92     C      92     13   51  133     6   13   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     D      93     D      93     13   51  133     6   18   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     F      94     F      94     13   51  133     6   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L      95     L      95     13   51  133     4   17   39   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     S      96     S      96     13   51  133     4   24   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G      97     G      97     13   51  133     4   22   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A      98     A      98     12   51  133     4   11   36   61   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     K      99     K      99      9   51  133     4   14   40   61   75   85   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L     100     L     100      6   51  133     3   17   37   56   73   84   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G     101     G     101      6   51  133     3   19   41   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     D     102     D     102      4   51  133     3   18   40   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     W     103     W     103      6   51  133     3    8   20   37   69   83   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     V     104     V     104      6   51  133     4   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E     105     E     105      6   51  133     4   13   40   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G     106     G     106      6   51  133     3   15   44   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E     107     E     107      6   51  133     3   26   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G     108     G     108      6   51  133     5   14   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E     109     E     109      6   51  133     5   12   26   57   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L     110     L     110      6   51  133     5    8   38   59   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     I     111     I     111      6   29  133     5    8   24   48   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     S     112     S     112      5   29  133     3   11   25   53   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E     113     E     113      5   29  133     4    9   29   47   70   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E     114     E     114      5   18  133     4    6   14   28   43   69   94  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     D     115     D     115      4   18  133     2    4   10   24   38   61   83  100  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     M     116     M     116      4   17  133     3    4   10   22   34   61   83  100  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L     117     L     117      5   12  133     3    4    6   13   38   70   94  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     F     118     F     118      5   12  133     3    5   10   24   61   83   98  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     T     119     T     119      5   12  133     3    3   10   22   34   60   94  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     V     120     V     120      5   20  133     0    4    6   19   44   82   97  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R     121     R     121      5   20  133     1    4    6   14   38   82   96  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G     122     G     122      5   20  133     0    4    9   35   68   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R     123     R     123      5   20  133     4    5   13   32   50   82   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     I     124     I     124      5   20  133     4    5    9   25   63   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     W     125     W     125      5   20  133     4    5   11   37   61   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A     126     A     126      5   20  133     4    8   15   43   72   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G     127     G     127      4   20  133     3    9   40   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     E     128     E     128      4   20  133     6   19   39   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     R     129     R     129      9   20  133     3   21   41   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     T     130     T     130      9   20  133     7   23   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L     131     L     131      9   20  133     6   22   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     I     132     I     132      9   20  133     4   12   27   55   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     T     133     T     133      9   20  133     4   12   24   51   72   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G     134     G     134      9   20  133     3   12   24   53   72   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     T     135     T     135      9   20  133     3   19   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     G     136     G     136      9   20  133     3   22   45   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     V     137     V     137      9   20  133     4   18   40   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     F     138     F     138      9   20  133     3    8   34   59   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     K     139     K     139      7   20  133     5   22   38   62   75   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A     140     A     140      7   20  133     3    9   29   50   71   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     L     141     L     141      5   20  133     1    6   22   39   65   86   99  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     S     142     S     142      4   12  133     3    3   17   31   52   75   92  105  112  114  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A     143     A     143      4    8  133     3    3    4   10   14   26   50   67   92  107  117  120  121  124  125  125  125  126  126  127 
LCS_GDT     R     144     R     144      5    7  133     3    4    6    6    6    7    9   17   22   25   35   50   57   71   82   90  112  120  124  127 
LCS_GDT     K     145     K     145      5    7  133     3    5    6    6    6    6    9   11   16   25   28   36   42   52   58   71   83   90  107  114 
LCS_GDT     P     146     P     146      5    7  133     3    5    6    6    6    6    7   13   19   25   32   38   48   57   66   78   95  105  111  124 
LCS_GDT     R     147     R     147      5    7  133     3    5    6    6    6    7    8    9   16   25   30   38   48   54   65   74   90  102  111  114 
LCS_GDT     P     148     P     148      5    7  133     3    5    6    6    6    7    8    9   13   17   32   36   44   54   60   71   83   93  104  114 
LCS_GDT     G     149     G     149      5    7  133     3    5    6    6    6    7    8    9   22   27   43   53   63   77   86  111  113  118  121  124 
LCS_GDT     E     150     E     150      4    5  133     3    4    5   14   23   29   41   56   84  100  108  116  121  124  125  125  125  126  126  127 
LCS_GDT     L     151     L     151      4    5  133     3    4   10   23   35   53   76   93  105  113  119  120  122  124  125  125  125  126  126  127 
LCS_GDT     A     152     A     152      4    5  133     3    4    4   19   23   61   83   91  103  111  119  119  122  124  125  125  125  126  126  127 
LCS_GDT     Y     153     Y     153      0    5  133     0    2    3   27   41   68   85  100  107  114  119  120  122  124  125  125  125  126  126  127 
LCS_AVERAGE  LCS_A:  39.83  (   6.77   22.03   90.68 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     26     45     62     75     86     99    105    112    114    119    120    122    124    125    125    125    126    126    127 
GDT PERCENT_CA   9.86  18.31  31.69  43.66  52.82  60.56  69.72  73.94  78.87  80.28  83.80  84.51  85.92  87.32  88.03  88.03  88.03  88.73  88.73  89.44
GDT RMS_LOCAL    0.35   0.67   1.02   1.33   1.59   1.93   2.15   2.29   2.59   2.67   2.87   2.97   3.07   3.22   3.29   3.29   3.29   3.39   3.39   3.63
GDT RMS_ALL_CA   9.14   9.11   9.13   9.16   9.23   8.99   8.98   8.99   8.85   8.90   8.90   8.81   8.98   8.86   8.91   8.91   8.91   8.85   8.85   8.78

#      Molecule1      Molecule2       DISTANCE
LGA    A      12      A      12         34.799
LGA    I      13      I      13         32.032
LGA    P      14      P      14         34.338
LGA    E      15      E      15         33.124
LGA    G      16      G      16         32.425
LGA    F      17      F      17         28.409
LGA    S      18      S      18         22.489
LGA    Q      19      Q      19         16.706
LGA    L      20      L      20         16.246
LGA    N      21      N      21         12.981
LGA    W      22      W      22          8.748
LGA    S      23      S      23          2.756
LGA    R      24      R      24          2.724
LGA    G      25      G      25          1.086
LGA    F      26      F      26          2.570
LGA    G      27      G      27          2.370
LGA    R      28      R      28          3.496
LGA    Q      29      Q      29          3.207
LGA    I      30      I      30          2.036
LGA    G      31      G      31          2.008
LGA    P      32      P      32          3.978
LGA    L      33      L      33          3.589
LGA    F      34      F      34          1.774
LGA    E      35      E      35          3.114
LGA    H      36      H      36          2.858
LGA    R      37      R      37          8.475
LGA    E      38      E      38          9.474
LGA    G      39      G      39          6.089
LGA    P      40      P      40          3.709
LGA    G      41      G      41          7.359
LGA    Q      42      Q      42          5.884
LGA    A      43      A      43          1.522
LGA    R      44      R      44          3.033
LGA    L      45      L      45          0.808
LGA    A      46      A      46          0.813
LGA    F      47      F      47          2.752
LGA    R      48      R      48          2.334
LGA    V      49      V      49          0.696
LGA    E      50      E      50          0.583
LGA    E      51      E      51          1.094
LGA    H      52      H      52          1.762
LGA    H      53      H      53          1.512
LGA    T      54      T      54          0.717
LGA    N      55      N      55          1.793
LGA    G      56      G      56          3.667
LGA    L      57      L      57          3.686
LGA    G      58      G      58          5.417
LGA    N      59      N      59          3.303
LGA    C      60      C      60          1.327
LGA    H      61      H      61          0.600
LGA    G      62      G      62          0.609
LGA    G      63      G      63          0.657
LGA    M      64      M      64          0.588
LGA    L      65      L      65          0.625
LGA    M      66      M      66          0.746
LGA    S      67      S      67          0.835
LGA    F      68      F      68          0.805
LGA    A      69      A      69          1.008
LGA    D      70      D      70          1.155
LGA    M      71      M      71          1.183
LGA    A      72      A      72          1.518
LGA    W      73      W      73          2.826
LGA    G      74      G      74          3.156
LGA    R      75      R      75          2.037
LGA    I      76      I      76          1.531
LGA    I      77      I      77          1.188
LGA    S      78      S      78          1.072
LGA    L      79      L      79          1.010
LGA    Q      80      Q      80          3.067
LGA    K      81      K      81          3.270
LGA    S      82      S      82          5.902
LGA    Y      83      Y      83          3.513
LGA    S      84      S      84          3.598
LGA    W      85      W      85          1.959
LGA    V      86      V      86          2.098
LGA    T      87      T      87          2.513
LGA    V      88      V      88          2.656
LGA    R      89      R      89          1.917
LGA    L      90      L      90          1.300
LGA    M      91      M      91          2.194
LGA    C      92      C      92          2.416
LGA    D      93      D      93          2.619
LGA    F      94      F      94          1.059
LGA    L      95      L      95          2.211
LGA    S      96      S      96          0.723
LGA    G      97      G      97          1.026
LGA    A      98      A      98          2.027
LGA    K      99      K      99          2.036
LGA    L     100      L     100          2.917
LGA    G     101      G     101          2.211
LGA    D     102      D     102          1.975
LGA    W     103      W     103          3.124
LGA    V     104      V     104          0.885
LGA    E     105      E     105          1.776
LGA    G     106      G     106          1.787
LGA    E     107      E     107          1.279
LGA    G     108      G     108          2.054
LGA    E     109      E     109          2.593
LGA    L     110      L     110          2.581
LGA    I     111      I     111          2.801
LGA    S     112      S     112          2.785
LGA    E     113      E     113          3.501
LGA    E     114      E     114          5.667
LGA    D     115      D     115          6.637
LGA    M     116      M     116          6.108
LGA    L     117      L     117          4.765
LGA    F     118      F     118          3.899
LGA    T     119      T     119          4.730
LGA    V     120      V     120          4.491
LGA    R     121      R     121          4.660
LGA    G     122      G     122          3.423
LGA    R     123      R     123          3.649
LGA    I     124      I     124          3.225
LGA    W     125      W     125          3.288
LGA    A     126      A     126          2.817
LGA    G     127      G     127          1.660
LGA    E     128      E     128          1.565
LGA    R     129      R     129          1.871
LGA    T     130      T     130          1.139
LGA    L     131      L     131          1.355
LGA    I     132      I     132          2.655
LGA    T     133      T     133          3.352
LGA    G     134      G     134          3.317
LGA    T     135      T     135          2.129
LGA    G     136      G     136          2.175
LGA    V     137      V     137          2.837
LGA    F     138      F     138          2.546
LGA    K     139      K     139          1.029
LGA    A     140      A     140          2.901
LGA    L     141      L     141          3.690
LGA    S     142      S     142          5.060
LGA    A     143      A     143          8.896
LGA    R     144      R     144         16.017
LGA    K     145      K     145         20.242
LGA    P     146      P     146         18.763
LGA    R     147      R     147         19.065
LGA    P     148      P     148         20.578
LGA    G     149      G     149         16.478
LGA    E     150      E     150         10.173
LGA    L     151      L     151          6.947
LGA    A     152      A     152          7.227
LGA    Y     153      Y     153          6.398

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  157  142    4.0    105    2.29    55.986    51.776     4.384

LGA_LOCAL      RMSD =  2.295  Number of atoms =  105  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  8.891  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  8.004  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.657269 * X  +  -0.391920 * Y  +   0.643736 * Z  +  10.339172
  Y_new =  -0.275570 * X  +  -0.919981 * Y  +  -0.278741 * Z  +  -5.535518
  Z_new =   0.701469 * X  +   0.005813 * Y  +  -0.712676 * Z  + -15.235462 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.133436   -0.008157  [ DEG:   179.5326     -0.4674 ]
  Theta =  -0.777456   -2.364136  [ DEG:   -44.5450   -135.4550 ]
  Phi   =  -0.397003    2.744590  [ DEG:   -22.7466    157.2534 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS393_2                                  
REMARK     2: T0322.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0322TS393_2.T0322.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  157  142   4.0  105   2.29  51.776     8.00
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS393_2
PFRMAT TS
TARGET T0322
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      20.999  16.673  -5.290  1.00 25.00           C
ATOM      2  CA  SER     2      24.636  15.811  -4.876  1.00 25.00           C
ATOM      3  CA  ASP     3      25.486  13.197  -7.565  1.00 25.00           C
ATOM      4  CA  ASP     4      27.086  10.584  -5.267  1.00 25.00           C
ATOM      5  CA  LEU     5      30.922  10.372  -5.474  1.00 25.00           C
ATOM      6  CA  THR     6      31.313  11.530  -1.902  1.00 25.00           C
ATOM      7  CA  ASP     7      33.469   9.006   0.066  1.00 25.00           C
ATOM      8  CA  ALA     8      30.102   8.092   1.645  1.00 25.00           C
ATOM      9  CA  GLN     9      29.278   5.852  -1.350  1.00 25.00           C
ATOM     10  CA  THR    10      32.688   4.136  -1.035  1.00 25.00           C
ATOM     11  CA  ALA    11      32.730   0.572   0.381  1.00 25.00           C
ATOM     12  CA  ALA    12      29.673   1.647   2.263  1.00 25.00           C
ATOM     13  CA  ILE    13      27.576   1.452   5.483  1.00 25.00           C
ATOM     14  CA  PRO    14      24.476   2.490   7.424  1.00 25.00           C
ATOM     15  CA  GLU    15      24.581  -0.754   9.408  1.00 25.00           C
ATOM     16  CA  GLY    16      21.877  -0.108  11.919  1.00 25.00           C
ATOM     17  CA  PHE    17      19.783   1.627   9.286  1.00 25.00           C
ATOM     18  CA  SER    18      16.532  -0.396   9.422  1.00 25.00           C
ATOM     19  CA  GLN    19      13.594  -1.975   7.556  1.00 25.00           C
ATOM     20  CA  LEU    20      12.052   1.348   6.337  1.00 25.00           C
ATOM     21  CA  ASN    21       9.144   3.088   4.590  1.00 25.00           C
ATOM     22  CA  TRP    22      10.701   4.138   1.279  1.00 25.00           C
ATOM     23  CA  SER    23      12.950   1.222   0.412  1.00 25.00           C
ATOM     24  CA  ARG    24      11.512  -0.019  -2.901  1.00 25.00           C
ATOM     25  CA  GLY    25       8.915   2.332  -4.348  1.00 25.00           C
ATOM     26  CA  PHE    26       8.138   0.188  -7.413  1.00 25.00           C
ATOM     27  CA  GLY    27       8.898  -3.295  -8.814  1.00 25.00           C
ATOM     28  CA  ARG    28       8.637  -4.793  -5.298  1.00 25.00           C
ATOM     29  CA  GLN    29       5.275  -3.034  -4.772  1.00 25.00           C
ATOM     30  CA  ILE    30       2.870  -5.312  -6.736  1.00 25.00           C
ATOM     31  CA  GLY    31       4.789  -8.033  -4.825  1.00 25.00           C
ATOM     32  CA  PRO    32       6.113  -9.192  -8.208  1.00 25.00           C
ATOM     33  CA  LEU    33       9.934  -9.389  -7.853  1.00 25.00           C
ATOM     34  CA  PHE    34      10.244 -12.924  -9.223  1.00 25.00           C
ATOM     35  CA  GLU    35      10.371 -16.036 -11.420  1.00 25.00           C
ATOM     36  CA  HIS    36      11.544 -17.628 -14.636  1.00 25.00           C
ATOM     37  CA  ARG    37      11.560 -17.068 -18.357  1.00 25.00           C
ATOM     38  CA  GLU    38      13.291 -19.422 -20.770  1.00 25.00           C
ATOM     39  CA  GLY    39      16.694 -20.436 -22.039  1.00 25.00           C
ATOM     40  CA  PRO    40      18.116 -17.910 -19.514  1.00 25.00           C
ATOM     41  CA  GLY    41      18.246 -15.075 -22.097  1.00 25.00           C
ATOM     42  CA  GLN    42      15.857 -12.355 -20.930  1.00 25.00           C
ATOM     43  CA  ALA    43      14.375 -12.620 -17.406  1.00 25.00           C
ATOM     44  CA  ARG    44      11.319 -11.857 -15.262  1.00 25.00           C
ATOM     45  CA  LEU    45       7.898 -12.298 -13.727  1.00 25.00           C
ATOM     46  CA  ALA    46       4.866 -13.572 -11.718  1.00 25.00           C
ATOM     47  CA  PHE    47       2.644 -10.493 -11.656  1.00 25.00           C
ATOM     48  CA  ARG    48       1.128 -11.993  -8.501  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.687 -11.557  -8.161  1.00 25.00           C
ATOM     50  CA  GLU    50      -3.827 -11.081  -4.557  1.00 25.00           C
ATOM     51  CA  GLU    51      -7.193  -9.496  -3.850  1.00 25.00           C
ATOM     52  CA  HIS    52      -5.610  -6.155  -2.850  1.00 25.00           C
ATOM     53  CA  HIS    53      -4.378  -5.636  -6.439  1.00 25.00           C
ATOM     54  CA  THR    54      -7.575  -6.753  -8.142  1.00 25.00           C
ATOM     55  CA  ASN    55     -11.037  -6.406  -9.650  1.00 25.00           C
ATOM     56  CA  GLY    56     -14.011  -8.265  -8.238  1.00 25.00           C
ATOM     57  CA  LEU    57     -15.711  -7.479 -11.560  1.00 25.00           C
ATOM     58  CA  GLY    58     -13.929 -10.403 -13.153  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.462  -9.521 -14.584  1.00 25.00           C
ATOM     60  CA  CYS    60      -7.101  -8.291 -13.338  1.00 25.00           C
ATOM     61  CA  HIS    61      -7.166  -4.449 -13.356  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.496  -4.438 -16.819  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.439  -1.643 -15.199  1.00 25.00           C
ATOM     64  CA  MET    64      -1.701  -4.199 -12.937  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.911  -6.389 -15.978  1.00 25.00           C
ATOM     66  CA  MET    66       0.530  -3.355 -17.819  1.00 25.00           C
ATOM     67  CA  SER    67       2.690  -2.501 -14.774  1.00 25.00           C
ATOM     68  CA  PHE    68       3.952  -6.115 -14.626  1.00 25.00           C
ATOM     69  CA  ALA    69       4.805  -5.996 -18.358  1.00 25.00           C
ATOM     70  CA  ASP    70       6.698  -2.708 -17.845  1.00 25.00           C
ATOM     71  CA  MET    71       8.639  -4.251 -14.927  1.00 25.00           C
ATOM     72  CA  ALA    72       9.523  -7.286 -17.088  1.00 25.00           C
ATOM     73  CA  TRP    73      10.726  -4.971 -19.891  1.00 25.00           C
ATOM     74  CA  GLY    74      12.877  -3.023 -17.392  1.00 25.00           C
ATOM     75  CA  ARG    75      14.377  -6.297 -16.092  1.00 25.00           C
ATOM     76  CA  ILE    76      15.158  -7.391 -19.679  1.00 25.00           C
ATOM     77  CA  ILE    77      16.837  -4.020 -20.368  1.00 25.00           C
ATOM     78  CA  SER    78      18.926  -4.380 -17.177  1.00 25.00           C
ATOM     79  CA  LEU    79      19.972  -7.909 -18.232  1.00 25.00           C
ATOM     80  CA  GLN    80      23.240  -6.496 -19.474  1.00 25.00           C
ATOM     81  CA  LYS    81      24.508  -3.292 -17.797  1.00 25.00           C
ATOM     82  CA  SER    82      25.905  -1.853 -20.990  1.00 25.00           C
ATOM     83  CA  TYR    83      22.614  -0.009 -21.307  1.00 25.00           C
ATOM     84  CA  SER    84      21.010   2.839 -19.328  1.00 25.00           C
ATOM     85  CA  TRP    85      17.580   1.124 -19.243  1.00 25.00           C
ATOM     86  CA  VAL    86      14.805   3.701 -19.813  1.00 25.00           C
ATOM     87  CA  THR    87      11.359   2.130 -20.212  1.00 25.00           C
ATOM     88  CA  VAL    88       9.702   4.639 -22.569  1.00 25.00           C
ATOM     89  CA  ARG    89       6.799   3.706 -24.937  1.00 25.00           C
ATOM     90  CA  LEU    90       4.094   1.095 -24.262  1.00 25.00           C
ATOM     91  CA  MET    91       0.714  -0.328 -25.339  1.00 25.00           C
ATOM     92  CA  CYS    92      -0.975  -3.090 -23.342  1.00 25.00           C
ATOM     93  CA  ASP    93      -4.016  -4.233 -25.321  1.00 25.00           C
ATOM     94  CA  PHE    94      -6.204  -7.109 -24.237  1.00 25.00           C
ATOM     95  CA  LEU    95      -8.530 -10.056 -24.025  1.00 25.00           C
ATOM     96  CA  SER    96      -8.948 -13.243 -21.902  1.00 25.00           C
ATOM     97  CA  GLY    97      -8.379 -12.973 -18.194  1.00 25.00           C
ATOM     98  CA  ALA    98      -7.903 -14.984 -15.006  1.00 25.00           C
ATOM     99  CA  LYS    99     -10.516 -14.416 -12.280  1.00 25.00           C
ATOM    100  CA  LEU   100      -7.895 -15.638  -9.914  1.00 25.00           C
ATOM    101  CA  GLY   101      -5.884 -18.139  -7.920  1.00 25.00           C
ATOM    102  CA  ASP   102      -3.036 -18.546 -10.374  1.00 25.00           C
ATOM    103  CA  TRP   103      -2.440 -15.144 -12.042  1.00 25.00           C
ATOM    104  CA  VAL   104       0.355 -14.088 -14.377  1.00 25.00           C
ATOM    105  CA  GLU   105       3.208 -13.471 -16.817  1.00 25.00           C
ATOM    106  CA  GLY   106       5.235 -10.664 -18.254  1.00 25.00           C
ATOM    107  CA  GLU   107       8.386 -12.358 -19.396  1.00 25.00           C
ATOM    108  CA  GLY   108       9.622  -9.689 -21.805  1.00 25.00           C
ATOM    109  CA  GLU   109      11.497 -12.142 -24.022  1.00 25.00           C
ATOM    110  CA  LEU   110      14.570 -10.424 -25.492  1.00 25.00           C
ATOM    111  CA  ILE   111      13.570 -10.208 -29.097  1.00 25.00           C
ATOM    112  CA  SER   112      13.851  -7.119 -31.283  1.00 25.00           C
ATOM    113  CA  GLU   113      16.417  -5.059 -33.265  1.00 25.00           C
ATOM    114  CA  GLU   114      15.743  -2.917 -36.390  1.00 25.00           C
ATOM    115  CA  ASP   115      15.658   0.241 -34.273  1.00 25.00           C
ATOM    116  CA  MET   116      14.863  -0.304 -30.597  1.00 25.00           C
ATOM    117  CA  LEU   117      15.930  -3.291 -28.549  1.00 25.00           C
ATOM    118  CA  PHE   118      13.746  -5.347 -26.226  1.00 25.00           C
ATOM    119  CA  THR   119      10.286  -6.908 -26.459  1.00 25.00           C
ATOM    120  CA  VAL   120       7.188  -9.069 -26.139  1.00 25.00           C
ATOM    121  CA  ARG   121       4.061 -11.081 -26.889  1.00 25.00           C
ATOM    122  CA  GLY   122       3.943 -11.506 -23.067  1.00 25.00           C
ATOM    123  CA  ARG   123       4.635 -15.071 -21.940  1.00 25.00           C
ATOM    124  CA  ILE   124       0.996 -15.543 -20.899  1.00 25.00           C
ATOM    125  CA  TRP   125       1.714 -18.199 -18.301  1.00 25.00           C
ATOM    126  CA  ALA   126      -0.459 -19.865 -15.621  1.00 25.00           C
ATOM    127  CA  GLY   127      -1.189 -22.907 -17.784  1.00 25.00           C
ATOM    128  CA  GLU   128      -4.018 -22.325 -20.245  1.00 25.00           C
ATOM    129  CA  ARG   129      -3.231 -19.429 -22.479  1.00 25.00           C
ATOM    130  CA  THR   130      -3.703 -15.679 -22.758  1.00 25.00           C
ATOM    131  CA  LEU   131      -3.604 -13.190 -19.932  1.00 25.00           C
ATOM    132  CA  ILE   132      -1.789  -9.846 -20.612  1.00 25.00           C
ATOM    133  CA  THR   133      -0.755  -8.212 -23.852  1.00 25.00           C
ATOM    134  CA  GLY   134       2.696  -6.772 -24.097  1.00 25.00           C
ATOM    135  CA  THR   135       5.101  -4.457 -26.014  1.00 25.00           C
ATOM    136  CA  GLY   136       7.551  -2.546 -23.794  1.00 25.00           C
ATOM    137  CA  VAL   137      10.936  -0.824 -24.394  1.00 25.00           C
ATOM    138  CA  PHE   138      14.665  -0.706 -23.912  1.00 25.00           C
ATOM    139  CA  LYS   139      15.961   2.641 -25.024  1.00 25.00           C
ATOM    140  CA  ALA   140      19.441   1.007 -25.057  1.00 25.00           C
ATOM    141  CA  LEU   141      20.556   4.592 -24.391  1.00 25.00           C
ATOM    142  CA  SER   142      22.777   7.400 -23.106  1.00 25.00           C
ATOM    143  CA  ALA   143      26.442   7.227 -24.048  1.00 25.00           C
ATOM    144  CA  ARG   144      28.116   9.604 -26.509  1.00 25.00           C
ATOM    145  CA  LYS   145      27.293   7.018 -29.113  1.00 25.00           C
ATOM    146  CA  PRO   146      25.907   3.568 -28.648  1.00 25.00           C
ATOM    147  CA  ARG   147      27.860   1.758 -25.942  1.00 25.00           C
ATOM    148  CA  PRO   148      27.404  -1.831 -27.250  1.00 25.00           C
ATOM    149  CA  GLY   149      25.336  -4.866 -26.326  1.00 25.00           C
ATOM    150  CA  GLU   150      24.593  -8.202 -24.634  1.00 25.00           C
ATOM    151  CA  LEU   151      21.207  -9.252 -23.263  1.00 25.00           C
ATOM    152  CA  ALA   152      23.301 -11.465 -20.983  1.00 25.00           C
ATOM    153  CA  TYR   153      24.468 -12.246 -17.506  1.00 25.00           C
ATOM    154  CA  LYS   154      27.114 -11.112 -15.012  1.00 25.00           C
ATOM    155  CA  GLU   155      27.108 -12.360 -11.371  1.00 25.00           C
ATOM    156  CA  GLU   156      24.755 -11.030  -8.756  1.00 25.00           C
ATOM    157  CA  ALA   157      22.761  -7.837  -9.128  1.00 25.00           C
TER
END
