
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  142 , name T0322TS168_5
# Molecule2: number of CA atoms  142 ( 1089),  selected  142 , name T0322.pdb
# PARAMETERS: T0322TS168_5.T0322.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   134        20 - 153         4.97     6.34
  LCS_AVERAGE:     92.55

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        40 - 81          1.96     7.93
  LONGEST_CONTINUOUS_SEGMENT:    42        43 - 84          1.99     7.08
  LCS_AVERAGE:     19.47

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        61 - 81          0.90     9.74
  LCS_AVERAGE:      7.07

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     A      12     A      12      6    6   20     3    4    6    6    6   15   21   28   37   43   50   60   71   80   97  105  114  120  126  129 
LCS_GDT     I      13     I      13      6    6   20     3    4    6    6    6    6    7   10   13   13   27   48   71   80   93  106  116  121  124  127 
LCS_GDT     P      14     P      14      6    6   20     3    4    6    6    6    6    9   10   13   34   35   40   43   46   53   63   80   98  109  115 
LCS_GDT     E      15     E      15      6    6  127     3    4    6    6    6    6    7    9   13   25   29   31   54   58   64   72   78   82  106  114 
LCS_GDT     G      16     G      16      6    6  129     3    4    6    6    6    6   11   12   14   15   17   18   19   21   23   25   27   46   65   87 
LCS_GDT     F      17     F      17      6    7  130     3    4    6    6    6    8   11   13   14   16   18   18   20   26   26   35   41   48   61   87 
LCS_GDT     S      18     S      18      5    7  130     3    4    5    6    6    8   11   13   14   17   21   32   33   40   60   92  107  115  117  125 
LCS_GDT     Q      19     Q      19      5    7  130     3    4    5    6    6    8   11   13   14   15   18   18   25   31   38   63   90  115  118  127 
LCS_GDT     L      20     L      20      5    7  134     3    4    5    6    6    8   10   13   14   17   21   22   31   33   41   47   84  105  111  119 
LCS_GDT     N      21     N      21      5    7  134     3    4    5    6    6    8   11   14   15   17   29   32   63  100  109  117  120  125  125  127 
LCS_GDT     W      22     W      22      5    7  134     3    4    5    5    8   10   21   54   79   94  106  111  119  122  123  125  126  126  127  127 
LCS_GDT     S      23     S      23      5    8  134     3    4   10   19   47   73   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R      24     R      24      5   11  134     3   10   29   47   60   74   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      25     G      25      7   12  134     4   14   24   42   57   71   86   97  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     F      26     F      26      7   12  134     5   10   24   42   59   74   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      27     G      27      7   12  134     5   15   29   47   60   74   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R      28     R      28      7   12  134     5   16   33   47   60   75   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     Q      29     Q      29      7   12  134     6   20   35   48   63   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     I      30     I      30      7   12  134     5   17   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      31     G      31      7   12  134     4   12   35   48   63   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     P      32     P      32      5   12  134     3    4    6    7   19   55   73   90  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L      33     L      33      5   12  134     3   13   29   45   59   74   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     F      34     F      34      5   12  134     3    8   20   45   59   71   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E      35     E      35      6   12  134     2    5   10   23   43   68   76   91  103  110  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     H      36     H      36      6   12  134     3    7   20   45   60   73   86   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R      37     R      37      6    9  134     3    5    6    7   11   13   46   58   80   90   99  110  120  122  123  125  126  126  127  129 
LCS_GDT     E      38     E      38      6    9  134     3    5    6    7   11   33   46   58   73   83  101  110  114  119  123  124  126  126  127  127 
LCS_GDT     G      39     G      39      6    9  134     3    6   13   24   37   50   58   86  103  110  116  120  120  122  123  125  126  126  127  129 
LCS_GDT     P      40     P      40      6   42  134     5   16   21   38   49   71   84   93  102  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      41     G      41      3   42  134     3    3   15   20   26   35   51   55   89   96  105  116  120  122  123  125  126  126  127  129 
LCS_GDT     Q      42     Q      42      3   42  134     3    3   14   28   42   64   80   91  102  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A      43     A      43      7   42  134     6   15   28   46   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R      44     R      44      7   42  134     6   14   28   46   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L      45     L      45     10   42  134     4   14   25   45   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A      46     A      46     10   42  134     3    7   20   38   61   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     F      47     F      47     10   42  134     3    7   14   36   61   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R      48     R      48     10   42  134     3   12   25   45   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     V      49     V      49     10   42  134     5   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E      50     E      50     10   42  134     7   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E      51     E      51     10   42  134     4   12   26   42   60   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     H      52     H      52     10   42  134     4   12   31   46   61   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     H      53     H      53     10   42  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     T      54     T      54     10   42  134     4   16   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     N      55     N      55      8   42  134     4    8   18   43   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      56     G      56      5   42  134     3    5   10   33   48   68   85   96  102  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L      57     L      57      6   42  134     4    9   26   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      58     G      58     11   42  134     4   12   23   36   60   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     N      59     N      59     13   42  134     4    9   23   36   59   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     C      60     C      60     20   42  134     4   14   30   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     H      61     H      61     21   42  134    11   16   21   36   60   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      62     G      62     21   42  134    11   16   25   44   62   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      63     G      63     21   42  134    11   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     M      64     M      64     21   42  134    11   16   32   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L      65     L      65     21   42  134    11   16   25   45   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     M      66     M      66     21   42  134    11   16   30   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     S      67     S      67     21   42  134    11   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     F      68     F      68     21   42  134    11   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A      69     A      69     21   42  134    11   16   25   45   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     D      70     D      70     21   42  134    11   16   25   44   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     M      71     M      71     21   42  134    11   16   31   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A      72     A      72     21   42  134     5   16   25   45   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     W      73     W      73     21   42  134     5   11   20   36   46   61   82   93  100  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      74     G      74     21   42  134     5   11   18   29   45   60   82   91  100  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R      75     R      75     21   42  134     9   16   25   43   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     I      76     I      76     21   42  134     6   16   25   43   63   77   87   96  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     I      77     I      77     21   42  134     6   10   25   38   61   77   86   96  103  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     S      78     S      78     21   42  134     6   16   25   44   64   77   87   97  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L      79     L      79     21   42  134     6   16   27   45   64   77   87   98  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     Q      80     Q      80     21   42  134     6   14   25   43   61   77   86   96  103  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     K      81     K      81     21   42  134     6   16   25   38   60   77   85   96  103  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     S      82     S      82      5   42  134     3    5   10   23   44   66   82   92  100  110  116  120  120  122  123  125  126  126  127  129 
LCS_GDT     Y      83     Y      83     12   42  134     3    9   22   41   61   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     S      84     S      84     15   42  134     3   15   32   46   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     W      85     W      85     15   38  134     8   20   34   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     V      86     V      86     15   38  134     3   17   32   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     T      87     T      87     16   38  134     5   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     V      88     V      88     16   38  134     5   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R      89     R      89     16   38  134     5   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L      90     L      90     16   38  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     M      91     M      91     16   38  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     C      92     C      92     16   37  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     D      93     D      93     16   37  134     6   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     F      94     F      94     16   37  134     6   16   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L      95     L      95     16   37  134     4   17   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     S      96     S      96     16   37  134     6   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G      97     G      97     16   37  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A      98     A      98     16   37  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     K      99     K      99     16   37  134     3   16   34   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L     100     L     100     16   32  134     3   18   34   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G     101     G     101     16   32  134     3   16   30   46   61   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     D     102     D     102     16   32  134     5   19   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     W     103     W     103      3   32  134     3    4   12   35   59   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     V     104     V     104      4   32  134     5   17   32   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E     105     E     105      4   32  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G     106     G     106      4   32  134     8   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E     107     E     107      4   32  134     6   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G     108     G     108      7   32  134     4   10   20   43   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E     109     E     109      7   32  134     5   14   26   46   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L     110     L     110      7   32  134     5   16   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     I     111     I     111      7   32  134     5   14   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     S     112     S     112      7   32  134     4    9   26   47   61   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E     113     E     113      7   32  134     3   11   31   47   60   76   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E     114     E     114      7   32  134     2    7   15   33   53   73   87   99  104  110  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     D     115     D     115      4   32  134     1    4   10   23   33   72   87   98  104  110  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     M     116     M     116      4   20  134     3    4    5   22   33   72   87   99  104  110  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L     117     L     117      5   24  134     3    5   10   19   26   61   74   94  104  108  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     F     118     F     118      5   24  134     4    7   13   27   45   66   85   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     T     119     T     119      5   24  134     4    8   13   27   52   68   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     V     120     V     120      5   24  134     4    5   12   21   39   64   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R     121     R     121      5   24  134     4    5   26   38   58   75   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G     122     G     122      5   24  134     4    5    9   34   58   74   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R     123     R     123      5   24  134     1    6   13   30   57   75   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     I     124     I     124      5   24  134     1    8   25   47   60   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     W     125     W     125      5   24  134     3    7   18   38   61   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A     126     A     126      5   24  134     3   15   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G     127     G     127      5   24  134     4   16   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     E     128     E     128      5   24  134     6   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     R     129     R     129      5   24  134     3    7   24   45   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     T     130     T     130     11   24  134     7   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L     131     L     131     11   24  134     4   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     I     132     I     132     11   24  134     4   12   27   47   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     T     133     T     133     11   24  134     3   14   26   46   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G     134     G     134     11   24  134     5   15   31   47   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     T     135     T     135     11   24  134     6   20   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     G     136     G     136     11   24  134     4   18   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     V     137     V     137     11   24  134     4   16   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     F     138     F     138     11   24  134     4   15   35   48   64   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     K     139     K     139     11   24  134     4   15   35   48   62   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A     140     A     140     11   24  134     4   13   35   47   60   77   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     L     141     L     141      6   23  134     4    7   16   36   53   73   87   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     S     142     S     142      4   11  134     3    5   14   31   47   66   83   94  102  110  116  120  120  122  123  125  126  126  127  129 
LCS_GDT     A     143     A     143      4    9  134     3    4    5    8    9   11   15   45   72   85   94  106  116  121  123  125  126  126  127  129 
LCS_GDT     R     144     R     144      4    7  134     3    4    4    7    9   17   22   42   59   66   83   89  105  116  122  124  126  126  127  129 
LCS_GDT     K     145     K     145      4    7  134     3    3    4    6    7   10   15   25   31   36   50   59   74   89  102  112  118  124  126  129 
LCS_GDT     P     146     P     146      4    7  134     3    3    4    6    7   10   15   17   23   30   44   52   68   81   98  109  117  120  126  129 
LCS_GDT     R     147     R     147      4    7  134     3    3    4    6    7    8   10   14   14   16   22   24   35   49   52   61   77   90  104  117 
LCS_GDT     P     148     P     148      4    7  134     3    3    4    6    7    7   10   10   15   19   29   37   49   55   70   83   97  108  116  122 
LCS_GDT     G     149     G     149      4    7  134     3    4    4    6    7    7   10   15   24   37   47   62   75   91  105  112  118  121  126  129 
LCS_GDT     E     150     E     150      4    5  134     3    4    5   12   20   30   44   66   80   98  108  116  120  122  123  125  126  126  127  129 
LCS_GDT     L     151     L     151      4    5  134     3    4    4   30   42   64   76   92  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     A     152     A     152      4    5  134     3    4    4    4    5    7   17   62  103  110  117  120  120  122  123  125  126  126  127  129 
LCS_GDT     Y     153     Y     153      0    4  134     0    0    5    6    6   36   81   99  104  111  117  120  120  122  123  125  126  126  127  129 
LCS_AVERAGE  LCS_A:  39.70  (   7.07   19.47   92.55 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     20     35     48     64     77     87     99    104    111    117    120    120    122    123    125    126    126    127    129 
GDT PERCENT_CA   7.75  14.08  24.65  33.80  45.07  54.23  61.27  69.72  73.24  78.17  82.39  84.51  84.51  85.92  86.62  88.03  88.73  88.73  89.44  90.85
GDT RMS_LOCAL    0.17   0.70   1.06   1.35   1.74   1.96   2.18   2.48   2.62   2.85   3.03   3.15   3.15   3.28   3.35   3.50   3.58   3.58   3.70   4.30
GDT RMS_ALL_CA   9.67   6.53   6.75   6.68   6.48   6.55   6.52   6.66   6.60   6.58   6.58   6.53   6.53   6.51   6.53   6.49   6.52   6.52   6.48   6.34

#      Molecule1      Molecule2       DISTANCE
LGA    A      12      A      12         15.522
LGA    I      13      I      13         14.301
LGA    P      14      P      14         18.968
LGA    E      15      E      15         21.044
LGA    G      16      G      16         22.195
LGA    F      17      F      17         18.623
LGA    S      18      S      18         14.588
LGA    Q      19      Q      19         14.403
LGA    L      20      L      20         14.198
LGA    N      21      N      21         11.298
LGA    W      22      W      22          7.463
LGA    S      23      S      23          3.555
LGA    R      24      R      24          3.968
LGA    G      25      G      25          4.692
LGA    F      26      F      26          3.988
LGA    G      27      G      27          3.367
LGA    R      28      R      28          2.827
LGA    Q      29      Q      29          1.718
LGA    I      30      I      30          1.841
LGA    G      31      G      31          1.749
LGA    P      32      P      32          4.945
LGA    L      33      L      33          3.530
LGA    F      34      F      34          3.724
LGA    E      35      E      35          5.072
LGA    H      36      H      36          3.277
LGA    R      37      R      37          8.377
LGA    E      38      E      38          9.220
LGA    G      39      G      39          6.485
LGA    P      40      P      40          6.128
LGA    G      41      G      41          8.699
LGA    Q      42      Q      42          5.911
LGA    A      43      A      43          3.373
LGA    R      44      R      44          2.863
LGA    L      45      L      45          3.582
LGA    A      46      A      46          3.560
LGA    F      47      F      47          3.315
LGA    R      48      R      48          2.569
LGA    V      49      V      49          1.406
LGA    E      50      E      50          1.432
LGA    E      51      E      51          3.158
LGA    H      52      H      52          2.688
LGA    H      53      H      53          0.971
LGA    T      54      T      54          1.335
LGA    N      55      N      55          2.521
LGA    G      56      G      56          5.051
LGA    L      57      L      57          2.390
LGA    G      58      G      58          3.863
LGA    N      59      N      59          3.879
LGA    C      60      C      60          2.103
LGA    H      61      H      61          3.520
LGA    G      62      G      62          3.023
LGA    G      63      G      63          1.020
LGA    M      64      M      64          1.478
LGA    L      65      L      65          2.498
LGA    M      66      M      66          2.105
LGA    S      67      S      67          0.759
LGA    F      68      F      68          1.145
LGA    A      69      A      69          2.916
LGA    D      70      D      70          3.044
LGA    M      71      M      71          2.152
LGA    A      72      A      72          3.333
LGA    W      73      W      73          6.013
LGA    G      74      G      74          5.962
LGA    R      75      R      75          3.977
LGA    I      76      I      76          4.776
LGA    I      77      I      77          5.489
LGA    S      78      S      78          4.446
LGA    L      79      L      79          4.165
LGA    Q      80      Q      80          5.972
LGA    K      81      K      81          6.023
LGA    S      82      S      82          6.847
LGA    Y      83      Y      83          3.974
LGA    S      84      S      84          2.787
LGA    W      85      W      85          1.291
LGA    V      86      V      86          1.966
LGA    T      87      T      87          1.285
LGA    V      88      V      88          0.705
LGA    R      89      R      89          0.386
LGA    L      90      L      90          0.770
LGA    M      91      M      91          1.054
LGA    C      92      C      92          1.173
LGA    D      93      D      93          1.314
LGA    F      94      F      94          1.786
LGA    L      95      L      95          1.588
LGA    S      96      S      96          0.376
LGA    G      97      G      97          0.952
LGA    A      98      A      98          0.694
LGA    K      99      K      99          1.803
LGA    L     100      L     100          1.958
LGA    G     101      G     101          2.776
LGA    D     102      D     102          1.657
LGA    W     103      W     103          3.086
LGA    V     104      V     104          1.950
LGA    E     105      E     105          1.305
LGA    G     106      G     106          0.898
LGA    E     107      E     107          0.420
LGA    G     108      G     108          3.641
LGA    E     109      E     109          2.666
LGA    L     110      L     110          1.619
LGA    I     111      I     111          1.684
LGA    S     112      S     112          2.436
LGA    E     113      E     113          1.853
LGA    E     114      E     114          3.486
LGA    D     115      D     115          4.121
LGA    M     116      M     116          3.656
LGA    L     117      L     117          4.837
LGA    F     118      F     118          3.897
LGA    T     119      T     119          3.636
LGA    V     120      V     120          3.757
LGA    R     121      R     121          3.024
LGA    G     122      G     122          2.992
LGA    R     123      R     123          3.358
LGA    I     124      I     124          2.070
LGA    W     125      W     125          2.747
LGA    A     126      A     126          1.220
LGA    G     127      G     127          1.195
LGA    E     128      E     128          0.295
LGA    R     129      R     129          3.209
LGA    T     130      T     130          1.373
LGA    L     131      L     131          0.665
LGA    I     132      I     132          1.971
LGA    T     133      T     133          2.239
LGA    G     134      G     134          2.193
LGA    T     135      T     135          1.234
LGA    G     136      G     136          1.476
LGA    V     137      V     137          1.852
LGA    F     138      F     138          1.996
LGA    K     139      K     139          1.333
LGA    A     140      A     140          1.808
LGA    L     141      L     141          3.223
LGA    S     142      S     142          6.307
LGA    A     143      A     143         10.815
LGA    R     144      R     144         11.945
LGA    K     145      K     145         15.851
LGA    P     146      P     146         16.451
LGA    R     147      R     147         20.059
LGA    P     148      P     148         19.212
LGA    G     149      G     149         15.693
LGA    E     150      E     150          8.769
LGA    L     151      L     151          5.229
LGA    A     152      A     152          4.795
LGA    Y     153      Y     153          3.770

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  157  142    4.0     99    2.48    51.408    47.464     3.842

LGA_LOCAL      RMSD =  2.477  Number of atoms =   99  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.631  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  6.177  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.751735 * X  +  -0.605794 * Y  +   0.260592 * Z  +   9.861655
  Y_new =  -0.513005 * X  +  -0.288882 * Y  +   0.808315 * Z  +  -8.485504
  Z_new =  -0.414392 * X  +  -0.741324 * Y  +  -0.527938 * Z  + -15.094845 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.189634    0.951959  [ DEG:  -125.4568     54.5432 ]
  Theta =   0.427275    2.714318  [ DEG:    24.4811    155.5190 ]
  Phi   =  -0.598835    2.542758  [ DEG:   -34.3107    145.6893 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS168_5                                  
REMARK     2: T0322.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0322TS168_5.T0322.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  157  142   4.0   99   2.48  47.464     6.18
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS168_5
PFRMAT TS
TARGET T0322
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      29.788 -29.577 -13.184  1.00 25.00           C
ATOM      2  CA  SER     2      27.958 -31.644 -10.542  1.00 25.00           C
ATOM      3  CA  ASP     3      24.343 -30.535  -9.857  1.00 25.00           C
ATOM      4  CA  ASP     4      21.948 -31.629  -7.070  1.00 25.00           C
ATOM      5  CA  LEU     5      22.854 -28.243  -5.650  1.00 25.00           C
ATOM      6  CA  THR     6      20.793 -29.157  -2.579  1.00 25.00           C
ATOM      7  CA  ASP     7      23.682 -28.349  -0.202  1.00 25.00           C
ATOM      8  CA  ALA     8      26.236 -26.443   1.924  1.00 25.00           C
ATOM      9  CA  GLN     9      26.056 -23.470  -0.483  1.00 25.00           C
ATOM     10  CA  THR    10      22.231 -23.508  -0.284  1.00 25.00           C
ATOM     11  CA  ALA    11      22.210 -22.699   3.427  1.00 25.00           C
ATOM     12  CA  ALA    12      18.754 -24.370   3.546  1.00 25.00           C
ATOM     13  CA  ILE    13      16.687 -21.398   4.761  1.00 25.00           C
ATOM     14  CA  PRO    14      18.678 -18.257   5.546  1.00 25.00           C
ATOM     15  CA  GLU    15      19.888 -15.043   7.068  1.00 25.00           C
ATOM     16  CA  GLY    16      17.502 -14.065   9.814  1.00 25.00           C
ATOM     17  CA  PHE    17      13.887 -15.068   9.171  1.00 25.00           C
ATOM     18  CA  SER    18      12.688 -11.684   7.910  1.00 25.00           C
ATOM     19  CA  GLN    19      15.218  -8.945   8.354  1.00 25.00           C
ATOM     20  CA  LEU    20      12.169  -6.604   8.215  1.00 25.00           C
ATOM     21  CA  ASN    21      12.422  -2.834   7.593  1.00 25.00           C
ATOM     22  CA  TRP    22      10.585  -2.178   4.277  1.00 25.00           C
ATOM     23  CA  SER    23      13.317   0.006   2.853  1.00 25.00           C
ATOM     24  CA  ARG    24      12.224  -1.171  -0.657  1.00 25.00           C
ATOM     25  CA  GLY    25       8.660  -0.362  -1.818  1.00 25.00           C
ATOM     26  CA  PHE    26       8.369  -0.878  -5.519  1.00 25.00           C
ATOM     27  CA  GLY    27       8.314  -4.687  -5.910  1.00 25.00           C
ATOM     28  CA  ARG    28       6.048  -4.994  -2.837  1.00 25.00           C
ATOM     29  CA  GLN    29       3.693  -2.341  -4.278  1.00 25.00           C
ATOM     30  CA  ILE    30       3.777  -3.633  -7.901  1.00 25.00           C
ATOM     31  CA  GLY    31       4.203  -7.328  -7.113  1.00 25.00           C
ATOM     32  CA  PRO    32       7.170  -9.068  -8.739  1.00 25.00           C
ATOM     33  CA  LEU    33       7.574 -12.747  -9.324  1.00 25.00           C
ATOM     34  CA  PHE    34      10.420 -13.965 -11.505  1.00 25.00           C
ATOM     35  CA  GLU    35       9.571 -17.565 -12.500  1.00 25.00           C
ATOM     36  CA  HIS    36      11.873 -16.866 -15.470  1.00 25.00           C
ATOM     37  CA  ARG    37      13.295 -15.987 -18.950  1.00 25.00           C
ATOM     38  CA  GLU    38      14.080 -19.017 -21.128  1.00 25.00           C
ATOM     39  CA  GLY    39      17.550 -18.513 -22.608  1.00 25.00           C
ATOM     40  CA  PRO    40      19.604 -16.174 -20.458  1.00 25.00           C
ATOM     41  CA  GLY    41      18.299 -13.544 -22.900  1.00 25.00           C
ATOM     42  CA  GLN    42      16.170 -11.743 -20.334  1.00 25.00           C
ATOM     43  CA  ALA    43      14.814 -10.664 -16.929  1.00 25.00           C
ATOM     44  CA  ARG    44      11.247 -11.726 -15.934  1.00 25.00           C
ATOM     45  CA  LEU    45       9.791  -8.984 -13.677  1.00 25.00           C
ATOM     46  CA  ALA    46       6.212 -10.289 -13.511  1.00 25.00           C
ATOM     47  CA  PHE    47       2.919  -9.714 -11.615  1.00 25.00           C
ATOM     48  CA  ARG    48       1.098 -12.318  -9.523  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.577 -11.334  -9.309  1.00 25.00           C
ATOM     50  CA  GLU    50      -3.204 -11.444  -5.587  1.00 25.00           C
ATOM     51  CA  GLU    51      -6.940 -10.994  -5.563  1.00 25.00           C
ATOM     52  CA  HIS    52      -6.536  -7.398  -4.307  1.00 25.00           C
ATOM     53  CA  HIS    53      -4.051  -6.666  -7.127  1.00 25.00           C
ATOM     54  CA  THR    54      -7.118  -6.050  -9.268  1.00 25.00           C
ATOM     55  CA  ASN    55      -9.155  -2.963 -10.003  1.00 25.00           C
ATOM     56  CA  GLY    56     -12.886  -3.160 -10.906  1.00 25.00           C
ATOM     57  CA  LEU    57     -14.323  -6.537  -9.781  1.00 25.00           C
ATOM     58  CA  GLY    58     -12.617  -9.430 -11.567  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.734  -7.907 -14.537  1.00 25.00           C
ATOM     60  CA  CYS    60      -6.962  -8.262 -14.121  1.00 25.00           C
ATOM     61  CA  HIS    61      -6.689  -5.448 -16.623  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.013  -3.123 -19.199  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.619  -1.047 -16.297  1.00 25.00           C
ATOM     64  CA  MET    64      -2.091  -4.197 -14.745  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.496  -5.109 -18.105  1.00 25.00           C
ATOM     66  CA  MET    66       0.941  -1.572 -18.411  1.00 25.00           C
ATOM     67  CA  SER    67       2.366  -1.820 -14.864  1.00 25.00           C
ATOM     68  CA  PHE    68       3.953  -5.200 -15.711  1.00 25.00           C
ATOM     69  CA  ALA    69       5.496  -3.709 -18.883  1.00 25.00           C
ATOM     70  CA  ASP    70       6.892  -0.776 -16.854  1.00 25.00           C
ATOM     71  CA  MET    71       8.383  -3.216 -14.307  1.00 25.00           C
ATOM     72  CA  ALA    72       9.989  -5.232 -17.140  1.00 25.00           C
ATOM     73  CA  TRP    73      11.460  -2.022 -18.624  1.00 25.00           C
ATOM     74  CA  GLY    74      12.864  -1.051 -15.195  1.00 25.00           C
ATOM     75  CA  ARG    75      14.425  -4.528 -14.822  1.00 25.00           C
ATOM     76  CA  ILE    76      15.998  -4.222 -18.300  1.00 25.00           C
ATOM     77  CA  ILE    77      17.410  -0.781 -17.386  1.00 25.00           C
ATOM     78  CA  SER    78      18.865  -2.212 -14.144  1.00 25.00           C
ATOM     79  CA  LEU    79      20.467  -5.086 -16.105  1.00 25.00           C
ATOM     80  CA  GLN    80      22.013  -2.750 -18.671  1.00 25.00           C
ATOM     81  CA  LYS    81      23.496  -0.850 -15.722  1.00 25.00           C
ATOM     82  CA  SER    82      23.224   2.992 -15.563  1.00 25.00           C
ATOM     83  CA  TYR    83      21.963   3.489 -19.125  1.00 25.00           C
ATOM     84  CA  SER    84      18.797   4.657 -17.406  1.00 25.00           C
ATOM     85  CA  TRP    85      15.737   3.515 -19.328  1.00 25.00           C
ATOM     86  CA  VAL    86      13.095   5.633 -21.032  1.00 25.00           C
ATOM     87  CA  THR    87       9.797   3.787 -20.931  1.00 25.00           C
ATOM     88  CA  VAL    88       9.562   4.443 -24.681  1.00 25.00           C
ATOM     89  CA  ARG    89       6.576   2.917 -26.417  1.00 25.00           C
ATOM     90  CA  LEU    90       3.720   0.747 -25.012  1.00 25.00           C
ATOM     91  CA  MET    91       0.754  -0.792 -26.801  1.00 25.00           C
ATOM     92  CA  CYS    92      -1.344  -3.425 -24.951  1.00 25.00           C
ATOM     93  CA  ASP    93      -4.288  -5.791 -25.670  1.00 25.00           C
ATOM     94  CA  PHE    94      -5.852  -7.049 -22.477  1.00 25.00           C
ATOM     95  CA  LEU    95      -7.337 -10.196 -24.080  1.00 25.00           C
ATOM     96  CA  SER    96      -8.700 -12.850 -21.773  1.00 25.00           C
ATOM     97  CA  GLY    97      -7.882 -12.614 -18.083  1.00 25.00           C
ATOM     98  CA  ALA    98      -6.360 -13.591 -14.719  1.00 25.00           C
ATOM     99  CA  LYS    99      -9.114 -15.217 -12.601  1.00 25.00           C
ATOM    100  CA  LEU   100      -7.450 -14.955  -9.162  1.00 25.00           C
ATOM    101  CA  GLY   101      -5.777 -18.346  -8.714  1.00 25.00           C
ATOM    102  CA  ASP   102      -4.013 -17.666 -12.033  1.00 25.00           C
ATOM    103  CA  TRP   103      -1.378 -15.001 -12.962  1.00 25.00           C
ATOM    104  CA  VAL   104       1.645 -13.585 -14.819  1.00 25.00           C
ATOM    105  CA  GLU   105       4.905 -14.780 -16.417  1.00 25.00           C
ATOM    106  CA  GLY   106       5.421 -11.563 -18.380  1.00 25.00           C
ATOM    107  CA  GLU   107       8.499 -12.210 -20.519  1.00 25.00           C
ATOM    108  CA  GLY   108      11.490  -9.910 -20.597  1.00 25.00           C
ATOM    109  CA  GLU   109      12.240 -11.451 -23.943  1.00 25.00           C
ATOM    110  CA  LEU   110      14.550  -9.270 -26.121  1.00 25.00           C
ATOM    111  CA  ILE   111      14.075  -9.196 -29.852  1.00 25.00           C
ATOM    112  CA  SER   112      17.191  -7.342 -30.986  1.00 25.00           C
ATOM    113  CA  GLU   113      17.367  -3.849 -32.519  1.00 25.00           C
ATOM    114  CA  GLU   114      17.162  -1.476 -35.398  1.00 25.00           C
ATOM    115  CA  ASP   115      17.501   1.170 -32.722  1.00 25.00           C
ATOM    116  CA  MET   116      16.934   0.127 -29.132  1.00 25.00           C
ATOM    117  CA  LEU   117      16.808  -3.056 -26.996  1.00 25.00           C
ATOM    118  CA  PHE   118      13.900  -4.389 -24.958  1.00 25.00           C
ATOM    119  CA  THR   119      10.841  -5.806 -26.718  1.00 25.00           C
ATOM    120  CA  VAL   120       8.481  -7.649 -24.460  1.00 25.00           C
ATOM    121  CA  ARG   121       6.600 -10.411 -26.173  1.00 25.00           C
ATOM    122  CA  GLY   122       4.284 -11.346 -23.308  1.00 25.00           C
ATOM    123  CA  ARG   123       4.307 -14.960 -22.130  1.00 25.00           C
ATOM    124  CA  ILE   124       1.172 -14.423 -20.025  1.00 25.00           C
ATOM    125  CA  TRP   125       1.343 -17.781 -18.370  1.00 25.00           C
ATOM    126  CA  ALA   126      -1.995 -18.806 -16.883  1.00 25.00           C
ATOM    127  CA  GLY   127      -0.773 -22.423 -17.311  1.00 25.00           C
ATOM    128  CA  GLU   128      -2.282 -22.336 -20.850  1.00 25.00           C
ATOM    129  CA  ARG   129      -1.631 -19.104 -22.743  1.00 25.00           C
ATOM    130  CA  THR   130      -2.123 -15.600 -24.132  1.00 25.00           C
ATOM    131  CA  LEU   131      -3.709 -13.376 -21.528  1.00 25.00           C
ATOM    132  CA  ILE   132      -1.724 -10.150 -21.274  1.00 25.00           C
ATOM    133  CA  THR   133      -0.323  -8.950 -24.598  1.00 25.00           C
ATOM    134  CA  GLY   134       2.732  -6.809 -25.266  1.00 25.00           C
ATOM    135  CA  THR   135       5.155  -4.444 -26.976  1.00 25.00           C
ATOM    136  CA  GLY   136       7.439  -2.601 -24.485  1.00 25.00           C
ATOM    137  CA  VAL   137      10.556  -0.573 -25.280  1.00 25.00           C
ATOM    138  CA  PHE   138      13.139   0.046 -22.542  1.00 25.00           C
ATOM    139  CA  LYS   139      15.855   1.957 -24.358  1.00 25.00           C
ATOM    140  CA  ALA   140      19.590   1.364 -23.750  1.00 25.00           C
ATOM    141  CA  LEU   141      20.902   4.933 -23.866  1.00 25.00           C
ATOM    142  CA  SER   142      21.664   8.630 -23.489  1.00 25.00           C
ATOM    143  CA  ALA   143      23.066  11.491 -21.526  1.00 25.00           C
ATOM    144  CA  ARG   144      26.396  11.083 -19.765  1.00 25.00           C
ATOM    145  CA  LYS   145      27.490   8.967 -22.683  1.00 25.00           C
ATOM    146  CA  PRO   146      28.471   5.514 -24.117  1.00 25.00           C
ATOM    147  CA  ARG   147      27.463   2.887 -26.630  1.00 25.00           C
ATOM    148  CA  PRO   148      28.150   0.165 -24.146  1.00 25.00           C
ATOM    149  CA  GLY   149      26.360  -3.230 -23.861  1.00 25.00           C
ATOM    150  CA  GLU   150      26.540  -6.310 -21.611  1.00 25.00           C
ATOM    151  CA  LEU   151      22.867  -7.305 -21.063  1.00 25.00           C
ATOM    152  CA  ALA   152      23.014  -9.298 -17.878  1.00 25.00           C
ATOM    153  CA  TYR   153      23.757  -9.780 -14.226  1.00 25.00           C
ATOM    154  CA  LYS   154      26.911 -11.772 -15.157  1.00 25.00           C
ATOM    155  CA  GLU   155      28.545 -10.548 -11.936  1.00 25.00           C
ATOM    156  CA  GLU   156      26.068  -9.295  -9.335  1.00 25.00           C
ATOM    157  CA  ALA   157      22.559 -10.684  -9.324  1.00 25.00           C
TER
END
