
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0332TS393_2-D1
# Molecule2: number of CA atoms  153 ( 1194),  selected  153 , name T0332_D1.pdb
# PARAMETERS: T0332TS393_2-D1.T0332_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   153         7 - 159         3.51     3.51
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    59        98 - 156         1.99     3.99
  LONGEST_CONTINUOUS_SEGMENT:    59        99 - 157         1.99     4.04
  LONGEST_CONTINUOUS_SEGMENT:    59       101 - 159         1.98     4.11
  LCS_AVERAGE:     24.71

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        14 - 36          0.97     3.74
  LCS_AVERAGE:      7.77

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     R       7     R       7      7   34  153     8   26   52   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L       8     L       8      7   34  153     6   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I       9     I       9      7   34  153     6   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      10     V      10      7   34  153     6   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      11     V      11      7   34  153     6   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     A      12     A      12      7   34  153    12   20   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S      13     S      13      7   34  153     4   20   37   54   83   98  116  127  133  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      14     L      14     23   34  153     5   21   53   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I      15     I      15     23   34  153    10   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     D      16     D      16     23   34  153     5   23   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     K      17     K      17     23   34  153     3    4   43   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     P      18     P      18     23   34  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     T      19     T      19     23   34  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     N      20     N      20     23   34  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      21     L      21     23   34  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G      22     G      22     23   34  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G      23     G      23     23   34  153    10   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      24     L      24     23   34  153    10   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     C      25     C      25     23   34  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     R      26     R      26     23   34  153    10   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     T      27     T      27     23   34  153    10   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     C      28     C      28     23   34  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E      29     E      29     23   34  153     8   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      30     V      30     23   34  153     8   25   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     F      31     F      31     23   34  153    11   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G      32     G      32     23   34  153     9   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     A      33     A      33     23   34  153     7   24   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S      34     S      34     23   34  153     3   10   23   73   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      35     V      35     23   34  153     7   24   50   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      36     L      36     23   34  153     3   25   50   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      37     V      37     21   34  153     3   16   45   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      38     V      38      4   34  153     0   20   44   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G      39     G      39      4   34  153     2   20   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S      40     S      40      4   34  153     0   15   29   47   66   88  111  126  133  138  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      41     L      41      3    6  153     3    3    6   10   15   22   33   40   44   86   94  117  131  138  143  148  151  152  153  153 
LCS_GDT     Q      42     Q      42      4    6  153     4   13   18   24   41   53   64   80  101  118  130  138  143  146  149  150  151  152  153  153 
LCS_GDT     C      43     C      43      4    6  153     3    7   19   40   60   99  116  126  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I      44     I      44      4    6  153     3    3    7   25   55   81  106  126  133  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S      45     S      45      4    6  153     4    9   27   43   61   89  112  124  133  138  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     D      46     D      46      3    9  153     3    5   21   40   79  100  116  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     K      47     K      47      8   12  153     7    9   20   26   34   51   67   82   97  127  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      48     Q      48      8   12  153     7    9   22   30   49   91  102  122  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     F      49     F      49      8   12  153     7   20   35   56   87  103  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      50     Q      50      8   12  153     7   18   24   31   59   77  102  122  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     H      51     H      51      8   12  153     7    9   22   28   43   65   92  110  130  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      52     L      52      8   12  153     7    9   23   44   79   97  116  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S      53     S      53      8   12  153     7   16   43   72   89  106  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      54     V      54      8   12  153     7    9   25   50   79   97  116  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S      55     S      55      3   12  153     5   21   47   71   87  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     A      56     A      56      3   12  153     4   15   41   71   87  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E      57     E      57      4   12  153     5   17   41   71   86  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      58     Q      58      4   12  153     5    6   26   60   83  101  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     W      59     W      59      5    9  153     5   17   32   56   84  102  116  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      60     L      60      5   23  153     3   14   37   63   88  105  117  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     P      61     P      61      5   23  153     3   14   37   67   91  105  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      62     L      62      5   23  153     5   13   42   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      63     V      63      5   23  153     3    7   20   45   87  105  117  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E      64     E      64      5   23  153     3   19   47   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      65     V      65      5   23  153     8   24   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     K      66     K      66      5   23  153     4   24   47   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     P      67     P      67      4   23  153     3    4    5   11   18   36   94  122  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     P      68     P      68      4   23  153     3    7   23   51   77  103  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      69     Q      69     14   23  153     3    4   32   52   79  100  113  126  133  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      70     L      70     14   23  153    10   16   43   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I      71     I      71     14   23  153    10   13   30   62   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     D      72     D      72     14   23  153    10   25   50   72   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Y      73     Y      73     14   23  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      74     L      74     14   23  153    10   13   36   66   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      75     Q      75     14   23  153    10   13   33   52   82  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      76     Q      76     14   23  153    10   15   45   70   90  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     K      77     K      77     14   23  153    10   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     K      78     K      78     14   23  153    10   13   28   50   82  106  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     T      79     T      79     14   23  153    10   13   23   54   74   99  116  125  133  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E      80     E      80     14   23  153     4   13   33   65   87  106  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G      81     G      81     14   23  153    10   13   34   66   89  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Y      82     Y      82     14   23  153     6   18   34   67   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     T      83     T      83      3   16  153     3    4    8   19   29   62   77  103  121  128  138  144  147  148  149  150  151  152  153  153 
LCS_GDT     I      84     I      84      3   15  153     1    4    7   17   34   72   94  105  124  133  140  145  147  148  149  150  151  152  153  153 
LCS_GDT     I      85     I      85      3   11  153     3    3    5    9   12   29   39   80  105  118  135  144  147  148  149  150  151  152  153  153 
LCS_GDT     G      86     G      86      3    8  153     3    3   21   33   70   97  117  126  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V      87     V      87      3    8  153     3   13   25   38   66  104  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E      88     E      88      3    8  153     4   18   33   56   86  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      89     Q      89      4    8  153     3    3   10   22   37   78  104  123  131  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     T      90     T      90      4    8  153     3    3    5    6   11   18   31   49   73   95  124  137  143  146  149  150  151  152  153  153 
LCS_GDT     A      91     A      91      4    8  153     3    4    5    6    8   10   13   22   38   50   66   93  106  124  136  142  146  150  153  153 
LCS_GDT     K      92     K      92      4    7  153     3    4    9   13   21   37   39   56   73   84  106  114  118  134  139  143  147  152  153  153 
LCS_GDT     S      93     S      93      6    8  153     3   17   30   47   64   77   99  108  118  132  140  143  146  148  149  150  151  152  153  153 
LCS_GDT     L      94     L      94      6   36  153     4   23   47   74   89  103  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     D      95     D      95      7   36  153     7   25   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L      96     L      96      7   36  153     4   23   47   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     T      97     T      97      7   36  153     4   13   35   66   90  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q      98     Q      98      7   59  153     4   12   33   66   90  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Y      99     Y      99      7   59  153     4   11   33   66   90  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     C     100     C     100      7   59  153     4   13   33   66   90  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     F     101     F     101      7   59  153     7   23   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     P     102     P     102      7   59  153     3    7   29   57   86  104  116  127  133  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E     103     E     103      3   59  153     3   11   21   50   85  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     K     104     K     104      6   59  153     4   20   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S     105     S     105      6   59  153     6   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     106     L     106      6   59  153     4   12   48   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     107     L     107      7   59  153     3    8   36   71   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     108     L     108      7   59  153     3    8   37   71   86  106  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     109     L     109      7   59  153     6   23   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G     110     G     110      7   59  153     6   23   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     N     111     N     111      7   59  153     4   16   36   71   88  106  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E     112     E     112      7   59  153     6   23   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     R     113     R     113      7   59  153     4   19   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E     114     E     114      7   59  153     5   21   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G     115     G     115     14   59  153     7   26   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I     116     I     116     14   59  153     5   26   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     P     117     P     117     14   59  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     A     118     A     118     14   59  153     6   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     N     119     N     119     14   59  153     5   23   52   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     120     L     120     14   59  153     5   19   50   73   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I     121     I     121     14   59  153     6   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q     122     Q     122     14   59  153     5   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q     123     Q     123     14   59  153     5   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     124     L     124     14   59  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     D     125     D     125     14   59  153     7   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V     126     V     126     14   59  153    10   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     C     127     C     127     14   59  153     5   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V     128     V     128     14   59  153     4   26   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E     129     E     129      7   59  153     7   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I     130     I     130      5   59  153     3    4    9   17   25   58   94  120  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     P     131     P     131      5   59  153     3    5   17   35   67   89  115  125  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q     132     Q     132      5   59  153     5   16   35   66   87  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q     133     Q     133     10   59  153     3   22   45   72   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G     134     G     134     10   59  153     3   21   45   71   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I     135     I     135     10   59  153     5   24   44   71   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I     136     I     136     12   59  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     R     137     R     137     20   59  153     8   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S     138     S     138     20   59  153     5   27   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     139     L     139     20   59  153    12   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     N     140     N     140     20   59  153     8   24   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V     141     V     141     20   59  153    14   24   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     H     142     H     142     20   59  153    14   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     V     143     V     143     20   59  153    14   21   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S     144     S     144     20   59  153    14   23   47   73   90  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     G     145     G     145     20   59  153    14   25   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     A     146     A     146     20   59  153    14   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     147     L     147     20   59  153    14   23   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     148     L     148     20   59  153    14   24   47   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     I     149     I     149     20   59  153    14   24   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     W     150     W     150     20   59  153    14   28   54   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     E     151     E     151     20   59  153    14   24   48   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Y     152     Y     152     20   59  153    14   24   47   74   90  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     T     153     T     153     20   59  153    14   24   49   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     R     154     R     154     20   59  153    13   24   51   74   91  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q     155     Q     155     20   59  153    12   24   47   71   88  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     Q     156     Q     156     20   59  153    14   24   46   70   87  107  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     157     L     157     18   59  153     3    7   16   43   72   89  109  125  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     L     158     L     158      4   59  153     3    7   18   32   61   84  105  125  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_GDT     S     159     S     159      4   59  153     3   13   23   47   74  106  118  127  134  141  143  145  147  148  149  150  151  152  153  153 
LCS_AVERAGE  LCS_A:  44.16  (   7.77   24.71  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     28     54     74     91    107    118    127    134    141    143    145    147    148    149    150    151    152    153    153 
GDT PERCENT_CA   9.15  18.30  35.29  48.37  59.48  69.93  77.12  83.01  87.58  92.16  93.46  94.77  96.08  96.73  97.39  98.04  98.69  99.35 100.00 100.00
GDT RMS_LOCAL    0.22   0.67   1.07   1.35   1.59   1.87   2.05   2.26   2.51   2.68   2.74   2.83   2.92   2.97   3.04   3.12   3.22   3.37   3.51   3.51
GDT RMS_ALL_CA   6.50   3.57   3.60   3.55   3.56   3.61   3.60   3.54   3.57   3.55   3.54   3.54   3.54   3.53   3.53   3.52   3.52   3.51   3.51   3.51

#      Molecule1      Molecule2       DISTANCE
LGA    R       7      R       7          0.948
LGA    L       8      L       8          0.787
LGA    I       9      I       9          0.767
LGA    V      10      V      10          1.380
LGA    V      11      V      11          1.367
LGA    A      12      A      12          1.753
LGA    S      13      S      13          3.840
LGA    L      14      L      14          2.041
LGA    I      15      I      15          1.505
LGA    D      16      D      16          2.406
LGA    K      17      K      17          2.070
LGA    P      18      P      18          0.911
LGA    T      19      T      19          0.711
LGA    N      20      N      20          0.635
LGA    L      21      L      21          0.621
LGA    G      22      G      22          1.124
LGA    G      23      G      23          1.267
LGA    L      24      L      24          0.706
LGA    C      25      C      25          0.741
LGA    R      26      R      26          1.507
LGA    T      27      T      27          1.222
LGA    C      28      C      28          0.382
LGA    E      29      E      29          1.659
LGA    V      30      V      30          1.908
LGA    F      31      F      31          0.679
LGA    G      32      G      32          0.842
LGA    A      33      A      33          1.711
LGA    S      34      S      34          2.616
LGA    V      35      V      35          1.345
LGA    L      36      L      36          1.295
LGA    V      37      V      37          1.330
LGA    V      38      V      38          2.047
LGA    G      39      G      39          2.457
LGA    S      40      S      40          4.971
LGA    L      41      L      41         10.552
LGA    Q      42      Q      42          8.565
LGA    C      43      C      43          4.270
LGA    I      44      I      44          5.160
LGA    S      45      S      45          5.636
LGA    D      46      D      46          3.686
LGA    K      47      K      47          6.973
LGA    Q      48      Q      48          5.017
LGA    F      49      F      49          2.651
LGA    Q      50      Q      50          4.934
LGA    H      51      H      51          5.931
LGA    L      52      L      52          3.760
LGA    S      53      S      53          2.016
LGA    V      54      V      54          3.906
LGA    S      55      S      55          3.590
LGA    A      56      A      56          3.512
LGA    E      57      E      57          3.781
LGA    Q      58      Q      58          3.892
LGA    W      59      W      59          3.428
LGA    L      60      L      60          2.846
LGA    P      61      P      61          2.633
LGA    L      62      L      62          2.593
LGA    V      63      V      63          3.791
LGA    E      64      E      64          2.247
LGA    V      65      V      65          2.199
LGA    K      66      K      66          1.837
LGA    P      67      P      67          5.389
LGA    P      68      P      68          3.486
LGA    Q      69      Q      69          4.349
LGA    L      70      L      70          1.637
LGA    I      71      I      71          2.333
LGA    D      72      D      72          2.196
LGA    Y      73      Y      73          0.893
LGA    L      74      L      74          2.069
LGA    Q      75      Q      75          3.698
LGA    Q      76      Q      76          3.256
LGA    K      77      K      77          1.601
LGA    K      78      K      78          3.808
LGA    T      79      T      79          4.875
LGA    E      80      E      80          3.711
LGA    G      81      G      81          3.533
LGA    Y      82      Y      82          2.728
LGA    T      83      T      83          6.866
LGA    I      84      I      84          5.986
LGA    I      85      I      85          7.190
LGA    G      86      G      86          4.210
LGA    V      87      V      87          3.821
LGA    E      88      E      88          2.956
LGA    Q      89      Q      89          4.670
LGA    T      90      T      90          8.918
LGA    A      91      A      91         12.689
LGA    K      92      K      92         12.434
LGA    S      93      S      93          6.591
LGA    L      94      L      94          2.791
LGA    D      95      D      95          1.500
LGA    L      96      L      96          1.962
LGA    T      97      T      97          3.185
LGA    Q      98      Q      98          3.387
LGA    Y      99      Y      99          3.085
LGA    C     100      C     100          2.982
LGA    F     101      F     101          1.838
LGA    P     102      P     102          3.711
LGA    E     103      E     103          3.177
LGA    K     104      K     104          1.160
LGA    S     105      S     105          1.173
LGA    L     106      L     106          1.765
LGA    L     107      L     107          2.458
LGA    L     108      L     108          3.114
LGA    L     109      L     109          1.999
LGA    G     110      G     110          1.812
LGA    N     111      N     111          3.091
LGA    E     112      E     112          2.202
LGA    R     113      R     113          2.151
LGA    E     114      E     114          2.736
LGA    G     115      G     115          0.974
LGA    I     116      I     116          1.333
LGA    P     117      P     117          0.600
LGA    A     118      A     118          1.060
LGA    N     119      N     119          2.017
LGA    L     120      L     120          2.269
LGA    I     121      I     121          1.557
LGA    Q     122      Q     122          1.574
LGA    Q     123      Q     123          1.659
LGA    L     124      L     124          1.071
LGA    D     125      D     125          0.737
LGA    V     126      V     126          0.489
LGA    C     127      C     127          1.140
LGA    V     128      V     128          1.243
LGA    E     129      E     129          1.299
LGA    I     130      I     130          5.911
LGA    P     131      P     131          5.040
LGA    Q     132      Q     132          2.991
LGA    Q     133      Q     133          2.031
LGA    G     134      G     134          2.761
LGA    I     135      I     135          2.492
LGA    I     136      I     136          0.962
LGA    R     137      R     137          0.444
LGA    S     138      S     138          1.311
LGA    L     139      L     139          0.377
LGA    N     140      N     140          1.857
LGA    V     141      V     141          2.107
LGA    H     142      H     142          0.718
LGA    V     143      V     143          1.823
LGA    S     144      S     144          2.625
LGA    G     145      G     145          1.735
LGA    A     146      A     146          0.718
LGA    L     147      L     147          2.101
LGA    L     148      L     148          2.567
LGA    I     149      I     149          1.844
LGA    W     150      W     150          1.318
LGA    E     151      E     151          2.393
LGA    Y     152      Y     152          2.796
LGA    T     153      T     153          2.170
LGA    R     154      R     154          2.110
LGA    Q     155      Q     155          3.037
LGA    Q     156      Q     156          3.229
LGA    L     157      L     157          5.151
LGA    L     158      L     158          5.538
LGA    S     159      S     159          3.834

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0    127    2.26    61.928    57.863     5.381

LGA_LOCAL      RMSD =  2.260  Number of atoms =  127  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.517  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  3.509  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.613814 * X  +   0.700740 * Y  +   0.363588 * Z  +  27.303850
  Y_new =  -0.607243 * X  +   0.124786 * Y  +   0.784656 * Z  +  42.741940
  Z_new =   0.504469 * X  +  -0.702419 * Y  +   0.502115 * Z  +  30.696598 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.950182    2.191411  [ DEG:   -54.4414    125.5586 ]
  Theta =  -0.528767   -2.612826  [ DEG:   -30.2961   -149.7039 ]
  Phi   =  -0.780017    2.361576  [ DEG:   -44.6917    135.3083 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0332TS393_2-D1                               
REMARK     2: T0332_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0332TS393_2-D1.T0332_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0  127   2.26  57.863     3.51
REMARK  ---------------------------------------------------------- 
MOLECULE T0332TS393_2-D1
PFRMAT TS
TARGET T0332
MODEL 2
PARENT N/A
ATOM      7  CA  ARG     7      22.335  38.412  41.363  1.00 25.00           C
ATOM      8  CA  LEU     8      22.403  38.167  37.557  1.00 25.00           C
ATOM      9  CA  ILE     9      24.397  41.339  37.011  1.00 25.00           C
ATOM     10  CA  VAL    10      24.383  42.690  33.455  1.00 25.00           C
ATOM     11  CA  VAL    11      26.952  45.447  33.414  1.00 25.00           C
ATOM     12  CA  ALA    12      28.578  46.774  30.263  1.00 25.00           C
ATOM     13  CA  SER    13      31.785  48.688  29.709  1.00 25.00           C
ATOM     14  CA  LEU    14      32.192  51.272  26.899  1.00 25.00           C
ATOM     15  CA  ILE    15      28.765  50.785  25.192  1.00 25.00           C
ATOM     16  CA  ASP    16      28.990  53.047  22.093  1.00 25.00           C
ATOM     17  CA  LYS    17      26.609  55.088  19.888  1.00 25.00           C
ATOM     18  CA  PRO    18      23.319  54.402  21.623  1.00 25.00           C
ATOM     19  CA  THR    19      22.145  51.494  19.424  1.00 25.00           C
ATOM     20  CA  ASN    20      24.475  49.103  21.301  1.00 25.00           C
ATOM     21  CA  LEU    21      23.109  50.361  24.650  1.00 25.00           C
ATOM     22  CA  GLY    22      19.523  49.835  23.413  1.00 25.00           C
ATOM     23  CA  GLY    23      20.403  46.279  22.295  1.00 25.00           C
ATOM     24  CA  LEU    24      21.952  45.560  25.723  1.00 25.00           C
ATOM     25  CA  CYS    25      18.803  46.885  27.452  1.00 25.00           C
ATOM     26  CA  ARG    26      16.616  44.664  25.226  1.00 25.00           C
ATOM     27  CA  THR    27      18.794  41.629  26.073  1.00 25.00           C
ATOM     28  CA  CYS    28      18.493  42.424  29.806  1.00 25.00           C
ATOM     29  CA  GLU    29      14.689  42.702  29.466  1.00 25.00           C
ATOM     30  CA  VAL    30      14.581  39.331  27.652  1.00 25.00           C
ATOM     31  CA  PHE    31      16.362  37.471  30.460  1.00 25.00           C
ATOM     32  CA  GLY    32      15.928  39.635  33.588  1.00 25.00           C
ATOM     33  CA  ALA    33      19.704  40.021  33.753  1.00 25.00           C
ATOM     34  CA  SER    34      19.491  43.104  36.033  1.00 25.00           C
ATOM     35  CA  VAL    35      21.897  45.948  36.869  1.00 25.00           C
ATOM     36  CA  LEU    36      22.736  48.377  34.068  1.00 25.00           C
ATOM     37  CA  VAL    37      25.514  49.614  36.274  1.00 25.00           C
ATOM     38  CA  VAL    38      27.201  50.940  33.178  1.00 25.00           C
ATOM     39  CA  GLY    39      29.476  53.099  31.022  1.00 25.00           C
ATOM     40  CA  SER    40      30.581  56.725  30.697  1.00 25.00           C
ATOM     41  CA  LEU    41      30.922  56.178  26.996  1.00 25.00           C
ATOM     42  CA  GLN    42      28.274  57.603  24.598  1.00 25.00           C
ATOM     43  CA  CYS    43      26.292  57.893  27.863  1.00 25.00           C
ATOM     44  CA  ILE    44      22.852  59.350  28.781  1.00 25.00           C
ATOM     45  CA  SER    45      22.658  60.020  25.071  1.00 25.00           C
ATOM     46  CA  ASP    46      19.734  62.322  26.096  1.00 25.00           C
ATOM     47  CA  LYS    47      17.946  59.393  27.810  1.00 25.00           C
ATOM     48  CA  GLN    48      17.965  57.942  24.265  1.00 25.00           C
ATOM     49  CA  PHE    49      18.947  54.509  25.649  1.00 25.00           C
ATOM     50  CA  GLN    50      16.108  54.702  28.213  1.00 25.00           C
ATOM     51  CA  HIS    51      13.632  55.619  25.438  1.00 25.00           C
ATOM     52  CA  LEU    52      14.851  52.658  23.338  1.00 25.00           C
ATOM     53  CA  SER    53      14.424  50.321  26.341  1.00 25.00           C
ATOM     54  CA  VAL    54      10.979  51.252  27.484  1.00 25.00           C
ATOM     55  CA  SER    55       9.748  47.892  26.073  1.00 25.00           C
ATOM     56  CA  ALA    56      10.558  45.607  29.003  1.00 25.00           C
ATOM     57  CA  GLU    57      13.285  47.600  30.810  1.00 25.00           C
ATOM     58  CA  GLN    58      11.073  47.847  33.926  1.00 25.00           C
ATOM     59  CA  TRP    59      14.215  49.411  35.395  1.00 25.00           C
ATOM     60  CA  LEU    60      17.559  48.196  34.220  1.00 25.00           C
ATOM     61  CA  PRO    61      18.977  50.518  36.851  1.00 25.00           C
ATOM     62  CA  LEU    62      20.324  52.946  34.212  1.00 25.00           C
ATOM     63  CA  VAL    63      23.788  54.409  34.895  1.00 25.00           C
ATOM     64  CA  GLU    64      27.402  55.081  36.074  1.00 25.00           C
ATOM     65  CA  VAL    65      30.598  53.026  36.373  1.00 25.00           C
ATOM     66  CA  LYS    66      32.968  55.801  35.294  1.00 25.00           C
ATOM     67  CA  PRO    67      33.857  58.221  38.062  1.00 25.00           C
ATOM     68  CA  PRO    68      36.227  56.086  40.162  1.00 25.00           C
ATOM     69  CA  GLN    69      38.537  54.143  37.872  1.00 25.00           C
ATOM     70  CA  LEU    70      36.028  51.336  38.530  1.00 25.00           C
ATOM     71  CA  ILE    71      37.599  50.915  41.996  1.00 25.00           C
ATOM     72  CA  ASP    72      34.498  52.469  43.619  1.00 25.00           C
ATOM     73  CA  TYR    73      32.241  50.093  41.636  1.00 25.00           C
ATOM     74  CA  LEU    74      34.363  47.107  42.750  1.00 25.00           C
ATOM     75  CA  GLN    75      34.120  48.262  46.393  1.00 25.00           C
ATOM     76  CA  GLN    76      30.319  48.590  46.062  1.00 25.00           C
ATOM     77  CA  LYS    77      30.120  45.063  44.581  1.00 25.00           C
ATOM     78  CA  LYS    78      32.227  43.704  47.474  1.00 25.00           C
ATOM     79  CA  THR    79      29.932  45.444  49.998  1.00 25.00           C
ATOM     80  CA  GLU    80      26.785  43.399  49.131  1.00 25.00           C
ATOM     81  CA  GLY    81      28.411  40.046  48.210  1.00 25.00           C
ATOM     82  CA  TYR    82      28.380  39.772  44.406  1.00 25.00           C
ATOM     83  CA  THR    83      28.291  42.101  41.351  1.00 25.00           C
ATOM     84  CA  ILE    84      29.377  43.537  38.000  1.00 25.00           C
ATOM     85  CA  ILE    85      31.754  44.947  35.376  1.00 25.00           C
ATOM     86  CA  GLY    86      33.579  41.647  35.209  1.00 25.00           C
ATOM     87  CA  VAL    87      34.544  41.303  31.588  1.00 25.00           C
ATOM     88  CA  GLU    88      36.780  40.990  28.544  1.00 25.00           C
ATOM     89  CA  GLN    89      34.962  39.499  25.597  1.00 25.00           C
ATOM     90  CA  THR    90      33.602  37.367  22.701  1.00 25.00           C
ATOM     91  CA  ALA    91      33.161  34.207  20.568  1.00 25.00           C
ATOM     92  CA  LYS    92      34.443  30.672  21.137  1.00 25.00           C
ATOM     93  CA  SER    93      37.708  30.226  23.092  1.00 25.00           C
ATOM     94  CA  LEU    94      37.927  29.130  26.735  1.00 25.00           C
ATOM     95  CA  ASP    95      34.162  29.131  26.459  1.00 25.00           C
ATOM     96  CA  LEU    96      31.111  29.920  28.678  1.00 25.00           C
ATOM     97  CA  THR    97      31.058  26.110  29.070  1.00 25.00           C
ATOM     98  CA  GLN    98      33.490  26.354  32.018  1.00 25.00           C
ATOM     99  CA  TYR    99      32.535  29.415  34.055  1.00 25.00           C
ATOM    100  CA  CYS   100      30.105  28.812  36.923  1.00 25.00           C
ATOM    101  CA  PHE   101      26.959  30.993  36.457  1.00 25.00           C
ATOM    102  CA  PRO   102      24.775  30.706  39.566  1.00 25.00           C
ATOM    103  CA  GLU   103      28.035  31.337  41.387  1.00 25.00           C
ATOM    104  CA  LYS   104      26.478  34.731  42.036  1.00 25.00           C
ATOM    105  CA  SER   105      27.097  36.789  38.911  1.00 25.00           C
ATOM    106  CA  LEU   106      29.776  38.637  36.986  1.00 25.00           C
ATOM    107  CA  LEU   107      27.898  38.785  33.670  1.00 25.00           C
ATOM    108  CA  LEU   108      29.497  41.518  31.611  1.00 25.00           C
ATOM    109  CA  LEU   109      30.467  42.578  28.037  1.00 25.00           C
ATOM    110  CA  GLY   110      32.707  45.079  26.278  1.00 25.00           C
ATOM    111  CA  ASN   111      32.207  47.385  23.245  1.00 25.00           C
ATOM    112  CA  GLU   112      32.323  47.679  19.414  1.00 25.00           C
ATOM    113  CA  ARG   113      36.054  48.154  19.692  1.00 25.00           C
ATOM    114  CA  GLU   114      39.342  47.241  21.436  1.00 25.00           C
ATOM    115  CA  GLY   115      37.197  47.315  24.536  1.00 25.00           C
ATOM    116  CA  ILE   116      37.339  46.988  28.306  1.00 25.00           C
ATOM    117  CA  PRO   117      40.769  48.576  28.855  1.00 25.00           C
ATOM    118  CA  ALA   118      43.320  46.526  30.855  1.00 25.00           C
ATOM    119  CA  ASN   119      41.736  47.708  34.136  1.00 25.00           C
ATOM    120  CA  LEU   120      38.478  45.906  33.239  1.00 25.00           C
ATOM    121  CA  ILE   121      40.432  42.705  32.465  1.00 25.00           C
ATOM    122  CA  GLN   122      42.250  42.973  35.826  1.00 25.00           C
ATOM    123  CA  GLN   123      38.902  43.436  37.627  1.00 25.00           C
ATOM    124  CA  LEU   124      38.036  39.784  36.870  1.00 25.00           C
ATOM    125  CA  ASP   125      38.371  36.447  38.674  1.00 25.00           C
ATOM    126  CA  VAL   126      38.207  34.942  35.167  1.00 25.00           C
ATOM    127  CA  CYS   127      36.922  36.734  31.997  1.00 25.00           C
ATOM    128  CA  VAL   128      34.619  35.568  29.182  1.00 25.00           C
ATOM    129  CA  GLU   129      36.310  34.372  25.969  1.00 25.00           C
ATOM    130  CA  ILE   130      38.163  35.314  22.784  1.00 25.00           C
ATOM    131  CA  PRO   131      38.316  33.829  19.285  1.00 25.00           C
ATOM    132  CA  GLN   132      36.430  33.985  16.021  1.00 25.00           C
ATOM    133  CA  GLN   133      36.185  31.375  13.325  1.00 25.00           C
ATOM    134  CA  GLY   134      37.172  32.830   9.898  1.00 25.00           C
ATOM    135  CA  ILE   135      38.754  36.137  10.743  1.00 25.00           C
ATOM    136  CA  ILE   136      35.404  37.767  11.495  1.00 25.00           C
ATOM    137  CA  ARG   137      37.484  39.732  14.023  1.00 25.00           C
ATOM    138  CA  SER   138      34.194  40.448  15.641  1.00 25.00           C
ATOM    139  CA  LEU   139      30.904  39.730  17.356  1.00 25.00           C
ATOM    140  CA  ASN   140      28.608  42.610  16.502  1.00 25.00           C
ATOM    141  CA  VAL   141      28.167  43.305  20.247  1.00 25.00           C
ATOM    142  CA  HIS   142      24.885  43.605  22.199  1.00 25.00           C
ATOM    143  CA  VAL   143      23.408  40.684  20.212  1.00 25.00           C
ATOM    144  CA  SER   144      26.520  38.578  20.946  1.00 25.00           C
ATOM    145  CA  GLY   145      26.235  39.412  24.674  1.00 25.00           C
ATOM    146  CA  ALA   146      22.538  38.408  24.640  1.00 25.00           C
ATOM    147  CA  LEU   147      23.425  35.104  22.921  1.00 25.00           C
ATOM    148  CA  LEU   148      26.132  34.435  25.547  1.00 25.00           C
ATOM    149  CA  ILE   149      23.622  35.154  28.350  1.00 25.00           C
ATOM    150  CA  TRP   150      21.105  32.753  26.746  1.00 25.00           C
ATOM    151  CA  GLU   151      23.806  30.050  26.496  1.00 25.00           C
ATOM    152  CA  TYR   152      24.702  30.568  30.183  1.00 25.00           C
ATOM    153  CA  THR   153      21.009  30.273  31.148  1.00 25.00           C
ATOM    154  CA  ARG   154      20.712  27.037  29.121  1.00 25.00           C
ATOM    155  CA  GLN   155      23.827  25.637  30.855  1.00 25.00           C
ATOM    156  CA  GLN   156      22.358  26.540  34.275  1.00 25.00           C
ATOM    157  CA  LEU   157      20.654  23.179  34.701  1.00 25.00           C
ATOM    158  CA  LEU   158      23.222  20.725  36.062  1.00 25.00           C
ATOM    159  CA  SER   159      23.017  22.431  39.385  1.00 25.00           C
TER
END
