
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0332TS168_4-D1
# Molecule2: number of CA atoms  153 ( 1194),  selected  153 , name T0332_D1.pdb
# PARAMETERS: T0332TS168_4-D1.T0332_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   153         7 - 159         3.30     3.30
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34         7 - 40          1.73     3.82
  LCS_AVERAGE:     15.25

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        18 - 40          0.99     4.11
  LCS_AVERAGE:      7.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     R       7     R       7      4   34  153     4   38   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L       8     L       8      4   34  153     4   24   49   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I       9     I       9      5   34  153     5   12   19   52   89  104  117  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      10     V      10      5   34  153     4   13   39   77   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      11     V      11      5   34  153     4   12   32   75   98  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     A      12     A      12      5   34  153     4   12   43   77   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S      13     S      13      5   34  153     4    7   18   36   59   97  120  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      14     L      14      4   34  153     3   25   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I      15     I      15      4   34  153     3    5   34   70   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     D      16     D      16      9   34  153     3   12   43   76   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     K      17     K      17     20   34  153     3    7   31   73   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     P      18     P      18     23   34  153    13   32   55   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     T      19     T      19     23   34  153    13   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     N      20     N      20     23   34  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      21     L      21     23   34  153    13   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G      22     G      22     23   34  153    13   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G      23     G      23     23   34  153    13   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      24     L      24     23   34  153    13   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     C      25     C      25     23   34  153    13   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     R      26     R      26     23   34  153    14   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     T      27     T      27     23   34  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     C      28     C      28     23   34  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E      29     E      29     23   34  153    14   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      30     V      30     23   34  153    13   38   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     F      31     F      31     23   34  153     3   30   56   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G      32     G      32     23   34  153     4   26   55   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     A      33     A      33     23   34  153    15   35   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S      34     S      34     23   34  153    14   29   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      35     V      35     23   34  153     8   25   55   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      36     L      36     23   34  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      37     V      37     23   34  153    10   25   45   75   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      38     V      38     23   34  153     3    5   30   71   98  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G      39     G      39     23   34  153     3    4   24   47   75  107  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S      40     S      40     23   34  153     4   15   26   47   74  100  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      41     L      41      3   24  153     3    3    3   14   17   26   42   58   74   93  113  129  140  145  149  150  151  152  153  153 
LCS_GDT     Q      42     Q      42      5   13  153     3    6   11   21   30   47   65   96  121  133  137  143  147  149  149  151  151  152  153  153 
LCS_GDT     C      43     C      43      5   13  153     4   21   45   73   96  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I      44     I      44      5   13  153     4    6   13   20   48   76   99  123  134  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S      45     S      45      5   13  153     4    6   13   27   56   76  103  122  133  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     D      46     D      46      8   13  153     4   10   27   57   86  107  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     K      47     K      47      9   13  153     7    9   14   21   57   84  109  123  134  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      48     Q      48      9   13  153     7    9   22   38   76   99  120  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     F      49     F      49      9   13  153     7   21   48   79   94  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      50     Q      50      9   13  153     7    9   16   48   72   96  119  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     H      51     H      51      9   13  153     7    9   16   42   72   94  119  127  134  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      52     L      52      9   13  153     5   12   31   70   92  108  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S      53     S      53      9   13  153     7   24   48   79   98  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      54     V      54      9   12  153     4    8   39   64   87  109  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S      55     S      55      9   12  153     4    7   13   44   76  100  117  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     A      56     A      56      6   12  153     4    7   21   60   89  108  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E      57     E      57      6   12  153     4    6   21   49   86  107  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      58     Q      58      6   12  153     4    6   28   61   90  108  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     W      59     W      59      6   12  153     6   24   48   79   98  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      60     L      60      6   11  153     6   23   52   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     P      61     P      61      6   11  153     2   15   49   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      62     L      62      5   11  153     4   24   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      63     V      63      5   11  153     4   31   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E      64     E      64      5   11  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      65     V      65      5   11  153    13   38   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     K      66     K      66      5   11  153     7   31   51   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     P      67     P      67      4    7  153     3    4    5    6    8   22   79  107  119  137  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     P      68     P      68      4   15  153     3    6   23   45   64  100  112  125  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      69     Q      69     11   16  153     3   14   35   61   89  108  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      70     L      70     11   16  153    11   13   52   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I      71     I      71     11   16  153    11   21   55   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     D      72     D      72     11   16  153    11   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Y      73     Y      73     11   16  153    11   37   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      74     L      74     11   16  153    11   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      75     Q      75     11   16  153    11   29   55   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      76     Q      76     11   16  153    11   29   54   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     K      77     K      77     11   16  153    11   21   54   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     K      78     K      78     11   16  153    14   26   54   76   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     T      79     T      79     11   16  153    11   24   43   68   92  107  116  127  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E      80     E      80      5   16  153     5   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G      81     G      81      5   16  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Y      82     Y      82      5   16  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     T      83     T      83      4   16  153     4   15   19   25   63   77   94  116  130  137  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I      84     I      84      4   16  153     8   16   19   26   56   77   98  118  131  138  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I      85     I      85      5   16  153     4    7   10   24   32   46   76  102  124  136  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G      86     G      86      5   15  153     3    4    6   11   29   48   71  114  128  137  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V      87     V      87      5    8  153     5   10   42   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E      88     E      88      5    8  153     3    9   21   51   90  109  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      89     Q      89      5    8  153     3    6   16   29   58  105  120  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     T      90     T      90      5    7  153     3    4    5   13   23   38   47   66   99  126  137  142  144  148  149  151  151  152  153  153 
LCS_GDT     A      91     A      91      5    7  153     3    5    5    6   11   17   30   44   52   73   87  105  128  141  144  146  149  152  153  153 
LCS_GDT     K      92     K      92      5    7  153     3    5   11   14   35   54   69   85  101  111  125  135  140  146  149  151  151  152  153  153 
LCS_GDT     S      93     S      93      6    9  153     4   17   34   59   79  107  120  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      94     L      94      6    9  153     3   24   51   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     D      95     D      95      6   10  153     5   33   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L      96     L      96      6   10  153    12   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     T      97     T      97      6   10  153     4   19   35   72   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q      98     Q      98      6   10  153     4   19   36   64   97  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Y      99     Y      99      6   10  153     3   19   36   67   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     C     100     C     100      6   28  153    11   25   55   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     F     101     F     101      6   28  153     5   21   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     P     102     P     102      4   28  153     2   17   28   47   75  106  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E     103     E     103      3   28  153     8   29   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     K     104     K     104      4   28  153     4   21   55   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S     105     S     105      4   28  153     5   25   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     106     L     106      4   28  153     3    4   31   58   84  107  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     107     L     107      5   28  153     3   11   17   20   62   80  113  127  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     108     L     108      7   28  153    16   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     109     L     109      7   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G     110     G     110      7   28  153     5   17   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     N     111     N     111      7   28  153     4   21   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E     112     E     112      7   28  153     6   34   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     R     113     R     113      7   28  153    11   35   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E     114     E     114      7   28  153     3   23   48   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G     115     G     115      9   28  153     8   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I     116     I     116      9   28  153     5   29   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     P     117     P     117      9   28  153     5   25   54   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     A     118     A     118      9   28  153     5   17   52   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     N     119     N     119      9   28  153     5   12   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     120     L     120      9   28  153     5   12   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I     121     I     121      9   28  153     5   18   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q     122     Q     122      9   28  153     5   14   49   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q     123     Q     123      9   28  153     6   31   53   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     124     L     124      9   28  153     5   30   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     D     125     D     125      9   28  153     3   23   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V     126     V     126      7   28  153     3   29   55   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     C     127     C     127      6   28  153     4   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V     128     V     128      6   28  153     3   15   45   71   97  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E     129     E     129      6   27  153     3    7   14   27   59   89  111  123  133  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I     130     I     130      5   23  153     3    8   14   25   33   53   89  104  120  130  139  146  148  149  149  151  151  152  153  153 
LCS_GDT     P     131     P     131      4   16  153     3   10   19   40   66   89  112  125  133  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q     132     Q     132      7   28  153     3   24   55   78   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q     133     Q     133      7   28  153     3   12   55   75   96  110  116  126  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G     134     G     134      7   28  153     3   25   42   74   97  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I     135     I     135      7   28  153     3    8   31   63   94  109  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I     136     I     136      7   28  153     1   10   25   53   82  109  121  128  136  140  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     R     137     R     137      7   28  153     3   12   31   61   94  109  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S     138     S     138     22   28  153     7   28   54   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     139     L     139     22   28  153     4   21   51   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     N     140     N     140     22   28  153     4   21   51   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V     141     V     141     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     H     142     H     142     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     V     143     V     143     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S     144     S     144     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     G     145     G     145     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     A     146     A     146     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     147     L     147     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     148     L     148     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     I     149     I     149     22   28  153    15   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     W     150     W     150     22   28  153    15   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     E     151     E     151     22   28  153    16   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Y     152     Y     152     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     T     153     T     153     22   28  153    15   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     R     154     R     154     22   28  153    15   38   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q     155     Q     155     22   28  153    14   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     Q     156     Q     156     22   28  153    18   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     157     L     157     22   28  153    15   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     L     158     L     158     22   28  153    15   39   56   79   99  110  121  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_GDT     S     159     S     159     22   28  153     2   10   31   67   89  102  115  128  136  141  144  147  148  149  149  151  151  152  153  153 
LCS_AVERAGE  LCS_A:  40.91  (   7.48   15.25  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     18     39     56     79     99    110    121    128    136    141    144    147    148    149    149    151    151    152    153    153 
GDT PERCENT_CA  11.76  25.49  36.60  51.63  64.71  71.90  79.08  83.66  88.89  92.16  94.12  96.08  96.73  97.39  97.39  98.69  98.69  99.35 100.00 100.00
GDT RMS_LOCAL    0.35   0.66   0.94   1.32   1.55   1.73   2.02   2.18   2.38   2.57   2.67   2.78   2.83   2.88   2.88   3.06   3.06   3.16   3.30   3.30
GDT RMS_ALL_CA   3.42   3.51   3.52   3.39   3.45   3.44   3.34   3.33   3.32   3.32   3.32   3.32   3.32   3.32   3.32   3.30   3.30   3.30   3.30   3.30

#      Molecule1      Molecule2       DISTANCE
LGA    R       7      R       7          1.190
LGA    L       8      L       8          2.267
LGA    I       9      I       9          3.454
LGA    V      10      V      10          2.574
LGA    V      11      V      11          2.626
LGA    A      12      A      12          2.237
LGA    S      13      S      13          3.853
LGA    L      14      L      14          1.589
LGA    I      15      I      15          2.612
LGA    D      16      D      16          2.689
LGA    K      17      K      17          2.380
LGA    P      18      P      18          1.909
LGA    T      19      T      19          1.366
LGA    N      20      N      20          1.058
LGA    L      21      L      21          1.249
LGA    G      22      G      22          1.229
LGA    G      23      G      23          1.216
LGA    L      24      L      24          0.990
LGA    C      25      C      25          0.805
LGA    R      26      R      26          1.160
LGA    T      27      T      27          0.797
LGA    C      28      C      28          0.447
LGA    E      29      E      29          1.310
LGA    V      30      V      30          1.574
LGA    F      31      F      31          2.307
LGA    G      32      G      32          2.397
LGA    A      33      A      33          1.241
LGA    S      34      S      34          2.243
LGA    V      35      V      35          1.716
LGA    L      36      L      36          0.384
LGA    V      37      V      37          1.805
LGA    V      38      V      38          2.372
LGA    G      39      G      39          2.952
LGA    S      40      S      40          3.764
LGA    L      41      L      41         10.113
LGA    Q      42      Q      42          7.205
LGA    C      43      C      43          2.836
LGA    I      44      I      44          6.097
LGA    S      45      S      45          6.425
LGA    D      46      D      46          4.036
LGA    K      47      K      47          5.843
LGA    Q      48      Q      48          4.447
LGA    F      49      F      49          2.267
LGA    Q      50      Q      50          4.524
LGA    H      51      H      51          5.216
LGA    L      52      L      52          3.087
LGA    S      53      S      53          1.992
LGA    V      54      V      54          2.859
LGA    S      55      S      55          3.895
LGA    A      56      A      56          3.895
LGA    E      57      E      57          3.932
LGA    Q      58      Q      58          3.198
LGA    W      59      W      59          1.951
LGA    L      60      L      60          2.024
LGA    P      61      P      61          2.531
LGA    L      62      L      62          2.269
LGA    V      63      V      63          1.658
LGA    E      64      E      64          0.803
LGA    V      65      V      65          1.264
LGA    K      66      K      66          1.512
LGA    P      67      P      67          7.031
LGA    P      68      P      68          4.879
LGA    Q      69      Q      69          3.297
LGA    L      70      L      70          2.034
LGA    I      71      I      71          2.208
LGA    D      72      D      72          2.143
LGA    Y      73      Y      73          1.873
LGA    L      74      L      74          1.953
LGA    Q      75      Q      75          3.335
LGA    Q      76      Q      76          3.692
LGA    K      77      K      77          3.204
LGA    K      78      K      78          3.843
LGA    T      79      T      79          4.931
LGA    E      80      E      80          2.122
LGA    G      81      G      81          1.528
LGA    Y      82      Y      82          0.911
LGA    T      83      T      83          6.341
LGA    I      84      I      84          5.768
LGA    I      85      I      85          6.535
LGA    G      86      G      86          5.939
LGA    V      87      V      87          2.136
LGA    E      88      E      88          3.241
LGA    Q      89      Q      89          4.198
LGA    T      90      T      90          8.266
LGA    A      91      A      91         11.971
LGA    K      92      K      92          9.552
LGA    S      93      S      93          3.378
LGA    L      94      L      94          1.516
LGA    D      95      D      95          2.158
LGA    L      96      L      96          1.853
LGA    T      97      T      97          3.206
LGA    Q      98      Q      98          3.723
LGA    Y      99      Y      99          3.657
LGA    C     100      C     100          2.363
LGA    F     101      F     101          2.220
LGA    P     102      P     102          3.785
LGA    E     103      E     103          1.536
LGA    K     104      K     104          1.381
LGA    S     105      S     105          1.413
LGA    L     106      L     106          3.038
LGA    L     107      L     107          4.237
LGA    L     108      L     108          1.028
LGA    L     109      L     109          0.696
LGA    G     110      G     110          1.359
LGA    N     111      N     111          1.546
LGA    E     112      E     112          0.720
LGA    R     113      R     113          0.417
LGA    E     114      E     114          1.859
LGA    G     115      G     115          1.797
LGA    I     116      I     116          1.693
LGA    P     117      P     117          2.714
LGA    A     118      A     118          2.136
LGA    N     119      N     119          1.908
LGA    L     120      L     120          1.878
LGA    I     121      I     121          1.618
LGA    Q     122      Q     122          1.264
LGA    Q     123      Q     123          0.521
LGA    L     124      L     124          2.237
LGA    D     125      D     125          1.703
LGA    V     126      V     126          1.581
LGA    C     127      C     127          2.279
LGA    V     128      V     128          3.168
LGA    E     129      E     129          5.465
LGA    I     130      I     130          7.336
LGA    P     131      P     131          5.475
LGA    Q     132      Q     132          3.356
LGA    Q     133      Q     133          4.696
LGA    G     134      G     134          3.846
LGA    I     135      I     135          3.465
LGA    I     136      I     136          3.951
LGA    R     137      R     137          2.898
LGA    S     138      S     138          0.590
LGA    L     139      L     139          2.205
LGA    N     140      N     140          2.008
LGA    V     141      V     141          0.821
LGA    H     142      H     142          0.443
LGA    V     143      V     143          1.048
LGA    S     144      S     144          0.945
LGA    G     145      G     145          0.350
LGA    A     146      A     146          0.455
LGA    L     147      L     147          0.925
LGA    L     148      L     148          0.779
LGA    I     149      I     149          0.340
LGA    W     150      W     150          1.070
LGA    E     151      E     151          1.202
LGA    Y     152      Y     152          0.346
LGA    T     153      T     153          0.934
LGA    R     154      R     154          1.811
LGA    Q     155      Q     155          1.502
LGA    Q     156      Q     156          0.190
LGA    L     157      L     157          1.201
LGA    L     158      L     158          1.601
LGA    S     159      S     159          3.879

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0    128    2.18    64.869    57.186     5.612

LGA_LOCAL      RMSD =  2.181  Number of atoms =  128  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.344  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  3.296  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.356206 * X  +   0.168508 * Y  +   0.919088 * Z  +  27.264009
  Y_new =  -0.506255 * X  +   0.791929 * Y  +  -0.341401 * Z  +  43.161118
  Z_new =  -0.785381 * X  +  -0.586902 * Y  +  -0.196782 * Z  +  31.119053 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.894306    1.247287  [ DEG:  -108.5357     71.4643 ]
  Theta =   0.903311    2.238281  [ DEG:    51.7559    128.2441 ]
  Phi   =  -2.183941    0.957652  [ DEG:  -125.1306     54.8694 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0332TS168_4-D1                               
REMARK     2: T0332_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0332TS168_4-D1.T0332_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0  128   2.18  57.186     3.30
REMARK  ---------------------------------------------------------- 
MOLECULE T0332TS168_4-D1
PFRMAT TS
TARGET T0332
MODEL 4
PARENT N/A
ATOM      7  CA  ARG     7      21.842  38.512  40.080  1.00 25.00           C
ATOM      8  CA  LEU     8      24.578  40.189  37.984  1.00 25.00           C
ATOM      9  CA  ILE     9      23.448  40.216  34.389  1.00 25.00           C
ATOM     10  CA  VAL    10      23.844  42.932  31.740  1.00 25.00           C
ATOM     11  CA  VAL    11      27.039  44.952  31.377  1.00 25.00           C
ATOM     12  CA  ALA    12      27.635  47.256  28.380  1.00 25.00           C
ATOM     13  CA  SER    13      30.867  49.117  28.670  1.00 25.00           C
ATOM     14  CA  LEU    14      32.605  52.410  28.197  1.00 25.00           C
ATOM     15  CA  ILE    15      30.628  53.260  25.081  1.00 25.00           C
ATOM     16  CA  ASP    16      30.352  54.535  21.510  1.00 25.00           C
ATOM     17  CA  LYS    17      27.041  55.607  19.948  1.00 25.00           C
ATOM     18  CA  PRO    18      25.126  54.409  22.987  1.00 25.00           C
ATOM     19  CA  THR    19      23.318  52.129  20.497  1.00 25.00           C
ATOM     20  CA  ASN    20      25.205  49.092  21.870  1.00 25.00           C
ATOM     21  CA  LEU    21      24.245  50.080  25.443  1.00 25.00           C
ATOM     22  CA  GLY    22      20.580  50.428  24.389  1.00 25.00           C
ATOM     23  CA  GLY    23      20.701  46.973  22.742  1.00 25.00           C
ATOM     24  CA  LEU    24      22.213  45.479  25.929  1.00 25.00           C
ATOM     25  CA  CYS    25      19.455  47.107  28.029  1.00 25.00           C
ATOM     26  CA  ARG    26      16.790  45.689  25.673  1.00 25.00           C
ATOM     27  CA  THR    27      18.361  42.208  25.951  1.00 25.00           C
ATOM     28  CA  CYS    28      18.369  42.489  29.770  1.00 25.00           C
ATOM     29  CA  GLU    29      14.684  43.527  29.726  1.00 25.00           C
ATOM     30  CA  VAL    30      13.844  40.538  27.483  1.00 25.00           C
ATOM     31  CA  PHE    31      16.396  37.933  28.562  1.00 25.00           C
ATOM     32  CA  GLY    32      15.752  38.190  32.267  1.00 25.00           C
ATOM     33  CA  ALA    33      17.996  40.380  34.389  1.00 25.00           C
ATOM     34  CA  SER    34      17.330  42.769  37.236  1.00 25.00           C
ATOM     35  CA  VAL    35      20.732  44.223  36.215  1.00 25.00           C
ATOM     36  CA  LEU    36      21.864  47.204  34.039  1.00 25.00           C
ATOM     37  CA  VAL    37      25.395  47.708  35.471  1.00 25.00           C
ATOM     38  CA  VAL    38      25.676  49.952  32.375  1.00 25.00           C
ATOM     39  CA  GLY    39      28.816  52.043  32.098  1.00 25.00           C
ATOM     40  CA  SER    40      29.139  55.819  31.709  1.00 25.00           C
ATOM     41  CA  LEU    41      31.700  57.243  29.245  1.00 25.00           C
ATOM     42  CA  GLN    42      28.587  58.244  27.312  1.00 25.00           C
ATOM     43  CA  CYS    43      24.791  58.148  27.890  1.00 25.00           C
ATOM     44  CA  ILE    44      23.018  60.098  30.651  1.00 25.00           C
ATOM     45  CA  SER    45      23.286  63.061  28.285  1.00 25.00           C
ATOM     46  CA  ASP    46      20.015  61.784  26.954  1.00 25.00           C
ATOM     47  CA  LYS    47      16.817  59.796  26.823  1.00 25.00           C
ATOM     48  CA  GLN    48      17.188  58.043  23.437  1.00 25.00           C
ATOM     49  CA  PHE    49      19.022  55.131  25.119  1.00 25.00           C
ATOM     50  CA  GLN    50      16.240  54.859  27.738  1.00 25.00           C
ATOM     51  CA  HIS    51      13.599  54.830  24.965  1.00 25.00           C
ATOM     52  CA  LEU    52      15.525  52.075  23.127  1.00 25.00           C
ATOM     53  CA  SER    53      15.724  50.026  26.356  1.00 25.00           C
ATOM     54  CA  VAL    54      12.201  48.588  26.263  1.00 25.00           C
ATOM     55  CA  SER    55      11.651  48.496  30.026  1.00 25.00           C
ATOM     56  CA  ALA    56      13.068  51.846  30.961  1.00 25.00           C
ATOM     57  CA  GLU    57      14.162  54.059  33.888  1.00 25.00           C
ATOM     58  CA  GLN    58      11.308  52.676  36.033  1.00 25.00           C
ATOM     59  CA  TRP    59      12.601  49.137  35.261  1.00 25.00           C
ATOM     60  CA  LEU    60      16.204  48.676  34.045  1.00 25.00           C
ATOM     61  CA  PRO    61      17.457  51.274  36.591  1.00 25.00           C
ATOM     62  CA  LEU    62      19.852  51.614  33.692  1.00 25.00           C
ATOM     63  CA  VAL    63      22.623  52.421  36.255  1.00 25.00           C
ATOM     64  CA  GLU    64      24.839  55.529  36.626  1.00 25.00           C
ATOM     65  CA  VAL    65      28.507  54.766  36.607  1.00 25.00           C
ATOM     66  CA  LYS    66      32.212  55.800  36.552  1.00 25.00           C
ATOM     67  CA  PRO    67      31.447  57.959  39.587  1.00 25.00           C
ATOM     68  CA  PRO    68      34.864  57.288  41.117  1.00 25.00           C
ATOM     69  CA  GLN    69      37.695  55.683  39.260  1.00 25.00           C
ATOM     70  CA  LEU    70      35.705  52.471  39.010  1.00 25.00           C
ATOM     71  CA  ILE    71      37.333  50.683  41.980  1.00 25.00           C
ATOM     72  CA  ASP    72      34.813  52.300  44.367  1.00 25.00           C
ATOM     73  CA  TYR    73      31.925  51.190  42.110  1.00 25.00           C
ATOM     74  CA  LEU    74      33.313  47.621  42.048  1.00 25.00           C
ATOM     75  CA  GLN    75      33.583  47.634  45.868  1.00 25.00           C
ATOM     76  CA  GLN    76      29.966  48.861  46.144  1.00 25.00           C
ATOM     77  CA  LYS    77      28.816  46.085  43.769  1.00 25.00           C
ATOM     78  CA  LYS    78      30.698  43.484  45.859  1.00 25.00           C
ATOM     79  CA  THR    79      29.058  44.826  49.049  1.00 25.00           C
ATOM     80  CA  GLU    80      27.521  41.318  49.119  1.00 25.00           C
ATOM     81  CA  GLY    81      29.421  38.475  47.413  1.00 25.00           C
ATOM     82  CA  TYR    82      30.013  38.970  43.629  1.00 25.00           C
ATOM     83  CA  THR    83      28.363  41.476  41.278  1.00 25.00           C
ATOM     84  CA  ILE    84      29.662  43.518  38.341  1.00 25.00           C
ATOM     85  CA  ILE    85      28.463  41.969  35.105  1.00 25.00           C
ATOM     86  CA  GLY    86      29.378  40.206  31.843  1.00 25.00           C
ATOM     87  CA  VAL    87      32.370  38.693  30.077  1.00 25.00           C
ATOM     88  CA  GLU    88      33.292  39.265  26.413  1.00 25.00           C
ATOM     89  CA  GLN    89      34.732  38.732  22.881  1.00 25.00           C
ATOM     90  CA  THR    90      34.345  34.990  23.646  1.00 25.00           C
ATOM     91  CA  ALA    91      33.872  31.768  21.660  1.00 25.00           C
ATOM     92  CA  LYS    92      37.246  30.245  22.693  1.00 25.00           C
ATOM     93  CA  SER    93      39.289  31.851  25.471  1.00 25.00           C
ATOM     94  CA  LEU    94      39.210  30.000  28.803  1.00 25.00           C
ATOM     95  CA  ASP    95      35.663  28.761  28.425  1.00 25.00           C
ATOM     96  CA  LEU    96      32.445  30.710  28.494  1.00 25.00           C
ATOM     97  CA  THR    97      30.655  27.347  28.888  1.00 25.00           C
ATOM     98  CA  GLN    98      32.512  26.717  32.178  1.00 25.00           C
ATOM     99  CA  TYR    99      32.236  29.598  34.625  1.00 25.00           C
ATOM    100  CA  CYS   100      29.039  28.393  36.220  1.00 25.00           C
ATOM    101  CA  PHE   101      26.590  31.357  36.223  1.00 25.00           C
ATOM    102  CA  PRO   102      24.905  29.856  39.329  1.00 25.00           C
ATOM    103  CA  GLU   103      26.394  32.642  41.449  1.00 25.00           C
ATOM    104  CA  LYS   104      27.213  36.250  40.451  1.00 25.00           C
ATOM    105  CA  SER   105      28.011  36.405  36.728  1.00 25.00           C
ATOM    106  CA  LEU   106      31.236  38.346  36.430  1.00 25.00           C
ATOM    107  CA  LEU   107      33.511  40.951  34.730  1.00 25.00           C
ATOM    108  CA  LEU   108      32.467  44.049  32.799  1.00 25.00           C
ATOM    109  CA  LEU   109      32.030  44.305  29.025  1.00 25.00           C
ATOM    110  CA  GLY   110      33.639  45.240  25.649  1.00 25.00           C
ATOM    111  CA  ASN   111      32.958  48.614  24.013  1.00 25.00           C
ATOM    112  CA  GLU   112      33.364  49.173  20.291  1.00 25.00           C
ATOM    113  CA  ARG   113      36.908  50.263  19.510  1.00 25.00           C
ATOM    114  CA  GLU   114      38.958  48.026  21.783  1.00 25.00           C
ATOM    115  CA  GLY   115      38.407  47.637  25.504  1.00 25.00           C
ATOM    116  CA  ILE   116      37.100  46.907  29.011  1.00 25.00           C
ATOM    117  CA  PRO   117      39.152  49.745  30.423  1.00 25.00           C
ATOM    118  CA  ALA   118      42.356  47.807  31.326  1.00 25.00           C
ATOM    119  CA  ASN   119      41.837  48.156  35.105  1.00 25.00           C
ATOM    120  CA  LEU   120      38.454  46.380  34.828  1.00 25.00           C
ATOM    121  CA  ILE   121      40.077  43.551  32.820  1.00 25.00           C
ATOM    122  CA  GLN   122      42.822  43.213  35.468  1.00 25.00           C
ATOM    123  CA  GLN   123      40.174  43.063  38.230  1.00 25.00           C
ATOM    124  CA  LEU   124      37.363  40.524  38.350  1.00 25.00           C
ATOM    125  CA  ASP   125      39.846  37.661  38.980  1.00 25.00           C
ATOM    126  CA  VAL   126      39.425  35.965  35.555  1.00 25.00           C
ATOM    127  CA  CYS   127      38.333  38.029  32.595  1.00 25.00           C
ATOM    128  CA  VAL   128      37.448  36.694  29.114  1.00 25.00           C
ATOM    129  CA  GLU   129      38.862  38.355  26.038  1.00 25.00           C
ATOM    130  CA  ILE   130      39.276  36.336  22.860  1.00 25.00           C
ATOM    131  CA  PRO   131      37.839  35.035  19.568  1.00 25.00           C
ATOM    132  CA  GLN   132      37.354  31.700  17.736  1.00 25.00           C
ATOM    133  CA  GLN   133      38.817  29.409  15.038  1.00 25.00           C
ATOM    134  CA  GLY   134      35.843  29.955  12.725  1.00 25.00           C
ATOM    135  CA  ILE   135      34.957  33.353  11.219  1.00 25.00           C
ATOM    136  CA  ILE   136      32.242  36.093  11.376  1.00 25.00           C
ATOM    137  CA  ARG   137      34.933  37.943  13.357  1.00 25.00           C
ATOM    138  CA  SER   138      34.414  40.288  16.331  1.00 25.00           C
ATOM    139  CA  LEU   139      31.518  42.080  18.026  1.00 25.00           C
ATOM    140  CA  ASN   140      29.301  45.028  18.953  1.00 25.00           C
ATOM    141  CA  VAL   141      29.585  44.229  22.630  1.00 25.00           C
ATOM    142  CA  HIS   142      25.778  43.814  22.634  1.00 25.00           C
ATOM    143  CA  VAL   143      26.127  40.367  21.002  1.00 25.00           C
ATOM    144  CA  SER   144      28.713  39.354  23.639  1.00 25.00           C
ATOM    145  CA  GLY   145      26.365  40.529  26.428  1.00 25.00           C
ATOM    146  CA  ALA   146      23.495  38.509  24.896  1.00 25.00           C
ATOM    147  CA  LEU   147      25.739  35.412  24.712  1.00 25.00           C
ATOM    148  CA  LEU   148      26.731  35.882  28.382  1.00 25.00           C
ATOM    149  CA  ILE   149      23.043  36.192  29.365  1.00 25.00           C
ATOM    150  CA  TRP   150      22.233  32.989  27.428  1.00 25.00           C
ATOM    151  CA  GLU   151      25.103  31.167  29.191  1.00 25.00           C
ATOM    152  CA  TYR   152      23.816  32.378  32.589  1.00 25.00           C
ATOM    153  CA  THR   153      20.293  31.155  31.719  1.00 25.00           C
ATOM    154  CA  ARG   154      21.703  27.744  30.696  1.00 25.00           C
ATOM    155  CA  GLN   155      23.637  27.527  33.995  1.00 25.00           C
ATOM    156  CA  GLN   156      20.455  28.390  35.945  1.00 25.00           C
ATOM    157  CA  LEU   157      17.904  26.065  34.453  1.00 25.00           C
ATOM    158  CA  LEU   158      20.323  23.068  34.330  1.00 25.00           C
ATOM    159  CA  SER   159      22.528  21.376  36.976  1.00 25.00           C
TER
END
