
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0332TS393_5-D1
# Molecule2: number of CA atoms  153 ( 1194),  selected  153 , name T0332_D1.pdb
# PARAMETERS: T0332TS393_5-D1.T0332_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   153         7 - 159         3.26     3.26
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    55       103 - 157         2.00     3.77
  LCS_AVERAGE:     23.70

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26       133 - 158         0.99     4.50
  LONGEST_CONTINUOUS_SEGMENT:    26       134 - 159         0.97     4.61
  LCS_AVERAGE:      7.33

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     R       7     R       7      3    5  153     5   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L       8     L       8      3    6  153     3    6   17   37   75  109  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I       9     I       9      4    6  153     3    4    6   12   32   65  111  127  134  138  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      10     V      10      4    6  153     3    4    6   12   52   95  119  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      11     V      11      4   29  153     3    4   16   49   80  108  119  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     A      12     A      12      4   29  153     3   11   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S      13     S      13      3   29  153     3    6   20   51   84  113  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      14     L      14      4   29  153     4   11   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I      15     I      15      4   29  153     3    7   18   52  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     D      16     D      16      4   29  153     3   10   27   68   97  114  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     K      17     K      17     15   29  153     3    7   18   40   93  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     P      18     P      18     16   29  153    11   26   42   72  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     T      19     T      19     16   29  153    10   26   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     N      20     N      20     16   29  153    11   26   45   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      21     L      21     16   29  153    11   25   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G      22     G      22     16   29  153    11   26   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G      23     G      23     16   29  153    11   26   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      24     L      24     16   29  153    11   26   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     C      25     C      25     16   29  153    10   22   42   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     R      26     R      26     16   29  153    11   26   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     T      27     T      27     16   29  153    11   26   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     C      28     C      28     16   29  153    11   24   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E      29     E      29     16   29  153    11   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      30     V      30     16   29  153    11   26   42   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     F      31     F      31     16   29  153     8   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G      32     G      32     16   29  153     3   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     A      33     A      33     16   29  153    10   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S      34     S      34      4   29  153     3    5   14   28   46   63   97  120  133  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      35     V      35      4   29  153     3   13   18   26   44   63   85  114  131  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      36     L      36      4   29  153     3    4    5    9   22   80  111  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      37     V      37      4   29  153     7   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      38     V      38      3   29  153     3   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G      39     G      39      3   29  153     3   10   38   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S      40     S      40      3   29  153     3   11   21   46   68   87  116  126  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      41     L      41      3    7  153     3    3    4    6    9   21   29   45   58   72   88  129  139  142  146  150  152  152  153  153 
LCS_GDT     Q      42     Q      42      3    8  153     3    3   13   26   39   51   71   90  103  133  140  146  149  149  149  150  152  152  153  153 
LCS_GDT     C      43     C      43      7   12  153     4    7   27   49   94  114  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I      44     I      44      7   12  153     4    7   10   19   41   72   94  114  131  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S      45     S      45      7   12  153     4    7   10   26   54   72  106  126  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     D      46     D      46      8   16  153     4    9   24   42   69  112  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     K      47     K      47      8   16  153     6   14   21   32   46   73  103  126  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      48     Q      48      8   16  153     6   14   22   35   58  103  120  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     F      49     F      49      8   16  153     6   14   24   54   99  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      50     Q      50      8   16  153     6   15   34   71  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     H      51     H      51      8   16  153     7   16   32   61   99  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      52     L      52      8   16  153     3   16   39   62   99  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S      53     S      53      8   30  153     7   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      54     V      54      8   30  153     3    7   36   58   98  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S      55     S      55      4   30  153     3    3   12   16   33   90  115  124  133  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     A      56     A      56      6   30  153     4   24   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E      57     E      57      6   30  153     4   24   45   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      58     Q      58      6   30  153     7   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     W      59     W      59      6   30  153     4   26   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      60     L      60      6   30  153     8   23   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     P      61     P      61      6   30  153    12   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      62     L      62      5   30  153     3   17   44   69  101  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      63     V      63      5   30  153     4   25   44   69  101  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E      64     E      64      5   30  153     8   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      65     V      65      5   30  153     6   25   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     K      66     K      66      5   30  153     4   22   42   73  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     P      67     P      67      5   30  153     3    9   15   31   42   61   99  120  131  138  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     P      68     P      68      3   30  153     3   14   35   57   88  112  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      69     Q      69      3   30  153     4   13   28   57   88  110  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      70     L      70     13   30  153    10   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I      71     I      71     13   30  153    10   26   42   70  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     D      72     D      72     13   30  153    10   20   44   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Y      73     Y      73     13   30  153    10   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      74     L      74     13   30  153    10   26   42   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      75     Q      75     13   30  153    10   22   42   61   94  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      76     Q      76     13   30  153    10   23   45   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     K      77     K      77     13   30  153    10   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     K      78     K      78     13   30  153    10   15   42   61   99  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     T      79     T      79     13   30  153    10   17   42   64   99  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E      80     E      80     13   30  153     6   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G      81     G      81     13   30  153     8   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Y      82     Y      82     13   30  153     8   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     T      83     T      83      3   15  153     3   17   20   27   43   61   74  108  128  137  142  146  149  149  149  150  152  152  153  153 
LCS_GDT     I      84     I      84      4   15  153     9   17   23   31   43   61   89  120  130  137  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I      85     I      85      4   12  153     3    4    6   17   22   44   62   89  123  135  142  146  149  149  149  150  152  152  153  153 
LCS_GDT     G      86     G      86      4    9  153     3    9   24   61   99  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V      87     V      87      5    9  153     3   23   42   62  100  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E      88     E      88      5    9  153     4   23   41   73  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      89     Q      89      5    9  153     2    6   17   28   41   81  111  127  134  138  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     T      90     T      90      5    9  153     1    3    6    7   20   34   52   73   98  120  135  141  146  148  149  150  152  152  153  153 
LCS_GDT     A      91     A      91      5    9  153     3    4    5    7   10   29   43   52   79   93  113  122  137  144  149  150  151  152  153  153 
LCS_GDT     K      92     K      92      4    8  153     3    4    7   16   30   46   61   71   97  110  119  137  144  147  149  150  152  152  153  153 
LCS_GDT     S      93     S      93      4   36  153     3   16   32   51   72   97  118  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      94     L      94      4   36  153     3   22   37   73  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     D      95     D      95      7   36  153     7   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L      96     L      96      7   36  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     T      97     T      97      7   36  153     5   18   45   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q      98     Q      98      7   36  153     5   18   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Y      99     Y      99      7   36  153     5   21   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     C     100     C     100      7   36  153     4   20   42   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     F     101     F     101      7   36  153     4   21   42   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     P     102     P     102      3   36  153     0   14   26   53   97  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E     103     E     103      3   55  153     1   15   37   70  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     K     104     K     104      6   55  153     5   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S     105     S     105      6   55  153     5   26   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     106     L     106      6   55  153     5   20   35   72  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     107     L     107      6   55  153     5   26   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     108     L     108      6   55  153     5    6   13   35   64   96  116  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     109     L     109     10   55  153     3   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G     110     G     110     10   55  153     5   24   46   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     N     111     N     111     10   55  153     3   20   46   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E     112     E     112     10   55  153     5   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     R     113     R     113     10   55  153     8   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E     114     E     114     10   55  153    12   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G     115     G     115     10   55  153     6   22   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I     116     I     116     10   55  153     6   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     P     117     P     117     10   55  153    16   26   46   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     A     118     A     118     10   55  153     5   26   45   73  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     N     119     N     119      9   55  153     4    9   38   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     120     L     120      9   55  153     4   21   46   73  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I     121     I     121      9   55  153     4   16   46   73  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q     122     Q     122      9   55  153     3   18   46   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q     123     Q     123      9   55  153     3   13   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     124     L     124      9   55  153     3   14   45   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     D     125     D     125      8   55  153     7   24   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V     126     V     126      8   55  153     6   24   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     C     127     C     127      5   55  153     5   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V     128     V     128      5   55  153     5   21   44   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E     129     E     129      5   55  153     3   21   39   52   75  106  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I     130     I     130      5   55  153     3    4   14   31   51   64   80  104  126  137  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     P     131     P     131      5   55  153     3   12   28   46   58   75  100  121  133  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q     132     Q     132      4   55  153     3   24   39   72  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q     133     Q     133     26   55  153     3   15   38   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G     134     G     134     26   55  153     3   12   44   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I     135     I     135     26   55  153     6   25   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I     136     I     136     26   55  153     4   25   46   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     R     137     R     137     26   55  153     4   17   46   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S     138     S     138     26   55  153     5   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     139     L     139     26   55  153     4   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     N     140     N     140     26   55  153     4   26   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V     141     V     141     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     H     142     H     142     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     V     143     V     143     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S     144     S     144     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     G     145     G     145     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     A     146     A     146     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     147     L     147     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     148     L     148     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     I     149     I     149     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     W     150     W     150     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     E     151     E     151     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Y     152     Y     152     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     T     153     T     153     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     R     154     R     154     26   55  153    13   25   44   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q     155     Q     155     26   55  153    11   25   46   74  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     Q     156     Q     156     26   55  153    16   27   48   75  102  116  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     157     L     157     26   55  153     4   20   39   67   95  113  121  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     L     158     L     158     26   51  153     4   20   38   62   88  112  119  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_GDT     S     159     S     159     26   51  153     5   16   35   57   82  106  117  127  134  141  143  146  149  149  149  150  152  152  153  153 
LCS_AVERAGE  LCS_A:  43.67  (   7.33   23.70  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     27     48     75    102    116    121    127    134    141    143    146    149    149    149    150    152    152    153    153 
GDT PERCENT_CA  10.46  17.65  31.37  49.02  66.67  75.82  79.08  83.01  87.58  92.16  93.46  95.42  97.39  97.39  97.39  98.04  99.35  99.35 100.00 100.00
GDT RMS_LOCAL    0.24   0.62   1.11   1.46   1.73   1.92   2.00   2.15   2.32   2.55   2.61   2.72   2.86   2.86   2.86   2.94   3.15   3.15   3.26   3.26
GDT RMS_ALL_CA   4.15   3.71   3.40   3.30   3.29   3.29   3.29   3.28   3.27   3.28   3.28   3.28   3.28   3.28   3.28   3.27   3.26   3.26   3.26   3.26

#      Molecule1      Molecule2       DISTANCE
LGA    R       7      R       7          0.871
LGA    L       8      L       8          3.729
LGA    I       9      I       9          4.721
LGA    V      10      V      10          3.976
LGA    V      11      V      11          3.860
LGA    A      12      A      12          1.953
LGA    S      13      S      13          3.598
LGA    L      14      L      14          1.930
LGA    I      15      I      15          2.509
LGA    D      16      D      16          3.282
LGA    K      17      K      17          2.902
LGA    P      18      P      18          2.417
LGA    T      19      T      19          1.755
LGA    N      20      N      20          1.560
LGA    L      21      L      21          2.184
LGA    G      22      G      22          2.086
LGA    G      23      G      23          1.831
LGA    L      24      L      24          2.213
LGA    C      25      C      25          2.437
LGA    R      26      R      26          2.166
LGA    T      27      T      27          2.226
LGA    C      28      C      28          2.223
LGA    E      29      E      29          2.229
LGA    V      30      V      30          2.583
LGA    F      31      F      31          1.814
LGA    G      32      G      32          2.147
LGA    A      33      A      33          1.346
LGA    S      34      S      34          5.693
LGA    V      35      V      35          5.913
LGA    L      36      L      36          4.378
LGA    V      37      V      37          1.146
LGA    V      38      V      38          1.840
LGA    G      39      G      39          2.029
LGA    S      40      S      40          4.974
LGA    L      41      L      41         10.540
LGA    Q      42      Q      42          7.285
LGA    C      43      C      43          3.386
LGA    I      44      I      44          5.641
LGA    S      45      S      45          5.151
LGA    D      46      D      46          3.603
LGA    K      47      K      47          4.313
LGA    Q      48      Q      48          3.902
LGA    F      49      F      49          2.415
LGA    Q      50      Q      50          1.985
LGA    H      51      H      51          2.563
LGA    L      52      L      52          3.008
LGA    S      53      S      53          1.342
LGA    V      54      V      54          3.466
LGA    S      55      S      55          5.142
LGA    A      56      A      56          2.163
LGA    E      57      E      57          1.450
LGA    Q      58      Q      58          1.119
LGA    W      59      W      59          2.190
LGA    L      60      L      60          2.231
LGA    P      61      P      61          1.550
LGA    L      62      L      62          3.308
LGA    V      63      V      63          3.224
LGA    E      64      E      64          1.467
LGA    V      65      V      65          1.409
LGA    K      66      K      66          2.037
LGA    P      67      P      67          5.688
LGA    P      68      P      68          3.427
LGA    Q      69      Q      69          3.742
LGA    L      70      L      70          1.043
LGA    I      71      I      71          2.429
LGA    D      72      D      72          2.323
LGA    Y      73      Y      73          0.600
LGA    L      74      L      74          2.005
LGA    Q      75      Q      75          3.151
LGA    Q      76      Q      76          2.178
LGA    K      77      K      77          0.673
LGA    K      78      K      78          2.862
LGA    T      79      T      79          3.097
LGA    E      80      E      80          1.235
LGA    G      81      G      81          0.892
LGA    Y      82      Y      82          0.806
LGA    T      83      T      83          6.027
LGA    I      84      I      84          5.406
LGA    I      85      I      85          6.146
LGA    G      86      G      86          2.630
LGA    V      87      V      87          2.931
LGA    E      88      E      88          1.946
LGA    Q      89      Q      89          4.649
LGA    T      90      T      90          7.980
LGA    A      91      A      91         10.644
LGA    K      92      K      92          9.933
LGA    S      93      S      93          4.462
LGA    L      94      L      94          2.396
LGA    D      95      D      95          1.792
LGA    L      96      L      96          1.186
LGA    T      97      T      97          1.565
LGA    Q      98      Q      98          1.907
LGA    Y      99      Y      99          1.400
LGA    C     100      C     100          2.070
LGA    F     101      F     101          1.811
LGA    P     102      P     102          2.805
LGA    E     103      E     103          2.849
LGA    K     104      K     104          0.817
LGA    S     105      S     105          1.378
LGA    L     106      L     106          2.578
LGA    L     107      L     107          1.923
LGA    L     108      L     108          4.142
LGA    L     109      L     109          1.374
LGA    G     110      G     110          1.979
LGA    N     111      N     111          2.221
LGA    E     112      E     112          2.334
LGA    R     113      R     113          1.710
LGA    E     114      E     114          1.906
LGA    G     115      G     115          0.964
LGA    I     116      I     116          0.954
LGA    P     117      P     117          1.888
LGA    A     118      A     118          2.243
LGA    N     119      N     119          1.986
LGA    L     120      L     120          2.065
LGA    I     121      I     121          2.219
LGA    Q     122      Q     122          2.233
LGA    Q     123      Q     123          1.778
LGA    L     124      L     124          1.539
LGA    D     125      D     125          1.525
LGA    V     126      V     126          1.420
LGA    C     127      C     127          1.198
LGA    V     128      V     128          1.947
LGA    E     129      E     129          4.533
LGA    I     130      I     130          7.770
LGA    P     131      P     131          6.365
LGA    Q     132      Q     132          2.727
LGA    Q     133      Q     133          1.723
LGA    G     134      G     134          3.099
LGA    I     135      I     135          0.877
LGA    I     136      I     136          1.733
LGA    R     137      R     137          1.893
LGA    S     138      S     138          0.970
LGA    L     139      L     139          0.590
LGA    N     140      N     140          0.931
LGA    V     141      V     141          1.912
LGA    H     142      H     142          2.189
LGA    V     143      V     143          2.197
LGA    S     144      S     144          1.706
LGA    G     145      G     145          1.461
LGA    A     146      A     146          1.851
LGA    L     147      L     147          1.651
LGA    L     148      L     148          0.827
LGA    I     149      I     149          1.538
LGA    W     150      W     150          2.107
LGA    E     151      E     151          1.683
LGA    Y     152      Y     152          0.945
LGA    T     153      T     153          1.910
LGA    R     154      R     154          2.831
LGA    Q     155      Q     155          2.373
LGA    Q     156      Q     156          1.357
LGA    L     157      L     157          3.702
LGA    L     158      L     158          4.346
LGA    S     159      S     159          4.945

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0    127    2.15    61.928    58.346     5.647

LGA_LOCAL      RMSD =  2.149  Number of atoms =  127  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.286  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  3.260  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.780272 * X  +   0.164368 * Y  +   0.603455 * Z  +  27.623278
  Y_new =   0.519151 * X  +   0.367865 * Y  +  -0.771465 * Z  +  42.686405
  Z_new =  -0.348795 * X  +   0.915237 * Y  +   0.201703 * Z  +  30.637728 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.353880   -1.787713  [ DEG:    77.5716   -102.4284 ]
  Theta =   0.356285    2.785308  [ DEG:    20.4136    159.5864 ]
  Phi   =   0.587087   -2.554505  [ DEG:    33.6376   -146.3624 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0332TS393_5-D1                               
REMARK     2: T0332_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0332TS393_5-D1.T0332_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0  127   2.15  58.346     3.26
REMARK  ---------------------------------------------------------- 
MOLECULE T0332TS393_5-D1
PFRMAT TS
TARGET T0332
MODEL 5
PARENT N/A
ATOM      7  CA  ARG     7      22.291  38.295  40.557  1.00 25.00           C
ATOM      8  CA  LEU     8      21.161  41.490  38.955  1.00 25.00           C
ATOM      9  CA  ILE     9      20.701  44.529  36.643  1.00 25.00           C
ATOM     10  CA  VAL    10      21.962  45.095  33.100  1.00 25.00           C
ATOM     11  CA  VAL    11      25.288  44.562  31.334  1.00 25.00           C
ATOM     12  CA  ALA    12      28.374  46.500  30.463  1.00 25.00           C
ATOM     13  CA  SER    13      30.988  48.948  29.236  1.00 25.00           C
ATOM     14  CA  LEU    14      32.795  51.530  27.058  1.00 25.00           C
ATOM     15  CA  ILE    15      30.320  52.851  24.463  1.00 25.00           C
ATOM     16  CA  ASP    16      30.070  54.144  20.833  1.00 25.00           C
ATOM     17  CA  LYS    17      27.058  56.405  20.243  1.00 25.00           C
ATOM     18  CA  PRO    18      25.572  54.624  23.260  1.00 25.00           C
ATOM     19  CA  THR    19      23.429  52.677  20.752  1.00 25.00           C
ATOM     20  CA  ASN    20      25.569  49.551  21.311  1.00 25.00           C
ATOM     21  CA  LEU    21      25.180  49.934  25.102  1.00 25.00           C
ATOM     22  CA  GLY    22      21.387  50.278  24.704  1.00 25.00           C
ATOM     23  CA  GLY    23      21.305  47.127  22.528  1.00 25.00           C
ATOM     24  CA  LEU    24      23.339  45.228  25.160  1.00 25.00           C
ATOM     25  CA  CYS    25      20.927  46.389  27.898  1.00 25.00           C
ATOM     26  CA  ARG    26      17.943  45.236  25.793  1.00 25.00           C
ATOM     27  CA  THR    27      19.603  41.826  25.263  1.00 25.00           C
ATOM     28  CA  CYS    28      20.223  41.514  29.029  1.00 25.00           C
ATOM     29  CA  GLU    29      16.559  42.384  29.728  1.00 25.00           C
ATOM     30  CA  VAL    30      15.424  39.744  27.197  1.00 25.00           C
ATOM     31  CA  PHE    31      17.207  37.380  29.551  1.00 25.00           C
ATOM     32  CA  GLY    32      15.572  37.757  32.980  1.00 25.00           C
ATOM     33  CA  ALA    33      18.218  40.233  34.090  1.00 25.00           C
ATOM     34  CA  SER    34      22.034  40.060  34.201  1.00 25.00           C
ATOM     35  CA  VAL    35      25.017  41.902  35.796  1.00 25.00           C
ATOM     36  CA  LEU    36      25.758  45.643  36.228  1.00 25.00           C
ATOM     37  CA  VAL    37      26.265  49.186  34.911  1.00 25.00           C
ATOM     38  CA  VAL    38      26.148  50.889  31.468  1.00 25.00           C
ATOM     39  CA  GLY    39      29.163  53.051  32.311  1.00 25.00           C
ATOM     40  CA  SER    40      30.485  56.280  30.779  1.00 25.00           C
ATOM     41  CA  LEU    41      31.210  57.401  27.247  1.00 25.00           C
ATOM     42  CA  GLN    42      27.867  58.374  25.822  1.00 25.00           C
ATOM     43  CA  CYS    43      24.894  59.266  27.998  1.00 25.00           C
ATOM     44  CA  ILE    44      22.891  58.825  31.162  1.00 25.00           C
ATOM     45  CA  SER    45      21.429  62.230  30.141  1.00 25.00           C
ATOM     46  CA  ASP    46      19.576  61.064  26.988  1.00 25.00           C
ATOM     47  CA  LYS    47      16.504  59.548  25.337  1.00 25.00           C
ATOM     48  CA  GLN    48      19.064  57.954  22.977  1.00 25.00           C
ATOM     49  CA  PHE    49      19.305  54.892  25.265  1.00 25.00           C
ATOM     50  CA  GLN    50      15.487  54.597  25.313  1.00 25.00           C
ATOM     51  CA  HIS    51      15.398  54.809  21.490  1.00 25.00           C
ATOM     52  CA  LEU    52      18.073  52.079  21.252  1.00 25.00           C
ATOM     53  CA  SER    53      16.059  49.862  23.640  1.00 25.00           C
ATOM     54  CA  VAL    54      13.392  47.116  23.484  1.00 25.00           C
ATOM     55  CA  SER    55      12.291  46.315  27.043  1.00 25.00           C
ATOM     56  CA  ALA    56      14.309  49.330  28.089  1.00 25.00           C
ATOM     57  CA  GLU    57      15.150  52.188  30.495  1.00 25.00           C
ATOM     58  CA  GLN    58      11.969  51.468  32.503  1.00 25.00           C
ATOM     59  CA  TRP    59      13.006  47.807  33.112  1.00 25.00           C
ATOM     60  CA  LEU    60      15.968  45.502  33.689  1.00 25.00           C
ATOM     61  CA  PRO    61      17.150  48.333  35.945  1.00 25.00           C
ATOM     62  CA  LEU    62      19.386  49.462  33.015  1.00 25.00           C
ATOM     63  CA  VAL    63      21.857  51.692  34.869  1.00 25.00           C
ATOM     64  CA  GLU    64      24.243  54.426  35.950  1.00 25.00           C
ATOM     65  CA  VAL    65      27.612  53.445  37.384  1.00 25.00           C
ATOM     66  CA  LYS    66      29.486  56.633  36.553  1.00 25.00           C
ATOM     67  CA  PRO    67      32.472  57.290  38.780  1.00 25.00           C
ATOM     68  CA  PRO    68      35.909  56.235  40.050  1.00 25.00           C
ATOM     69  CA  GLN    69      37.775  53.792  37.857  1.00 25.00           C
ATOM     70  CA  LEU    70      35.005  51.320  38.882  1.00 25.00           C
ATOM     71  CA  ILE    71      37.042  50.884  42.096  1.00 25.00           C
ATOM     72  CA  ASP    72      33.986  51.850  44.193  1.00 25.00           C
ATOM     73  CA  TYR    73      31.841  49.320  42.278  1.00 25.00           C
ATOM     74  CA  LEU    74      34.472  46.602  42.874  1.00 25.00           C
ATOM     75  CA  GLN    75      34.534  47.446  46.609  1.00 25.00           C
ATOM     76  CA  GLN    76      30.711  47.240  46.743  1.00 25.00           C
ATOM     77  CA  LYS    77      30.808  43.838  44.989  1.00 25.00           C
ATOM     78  CA  LYS    78      33.427  42.594  47.491  1.00 25.00           C
ATOM     79  CA  THR    79      31.252  43.798  50.404  1.00 25.00           C
ATOM     80  CA  GLU    80      29.039  40.922  49.310  1.00 25.00           C
ATOM     81  CA  GLY    81      30.719  38.135  47.266  1.00 25.00           C
ATOM     82  CA  TYR    82      30.008  38.878  43.561  1.00 25.00           C
ATOM     83  CA  THR    83      28.286  41.010  40.970  1.00 25.00           C
ATOM     84  CA  ILE    84      29.662  42.979  37.985  1.00 25.00           C
ATOM     85  CA  ILE    85      31.194  43.686  34.612  1.00 25.00           C
ATOM     86  CA  GLY    86      33.921  41.273  33.577  1.00 25.00           C
ATOM     87  CA  VAL    87      35.477  40.861  30.112  1.00 25.00           C
ATOM     88  CA  GLU    88      36.163  41.334  26.366  1.00 25.00           C
ATOM     89  CA  GLN    89      34.283  38.891  24.094  1.00 25.00           C
ATOM     90  CA  THR    90      34.659  35.169  23.387  1.00 25.00           C
ATOM     91  CA  ALA    91      35.326  31.855  21.607  1.00 25.00           C
ATOM     92  CA  LYS    92      38.238  29.326  21.756  1.00 25.00           C
ATOM     93  CA  SER    93      40.058  31.418  24.383  1.00 25.00           C
ATOM     94  CA  LEU    94      39.797  29.936  27.897  1.00 25.00           C
ATOM     95  CA  ASP    95      36.303  28.437  27.788  1.00 25.00           C
ATOM     96  CA  LEU    96      32.675  29.577  27.753  1.00 25.00           C
ATOM     97  CA  THR    97      30.465  26.482  27.297  1.00 25.00           C
ATOM     98  CA  GLN    98      32.014  24.886  30.414  1.00 25.00           C
ATOM     99  CA  TYR    99      31.455  27.928  32.576  1.00 25.00           C
ATOM    100  CA  CYS   100      29.881  28.609  35.922  1.00 25.00           C
ATOM    101  CA  PHE   101      27.453  31.490  36.729  1.00 25.00           C
ATOM    102  CA  PRO   102      26.273  29.419  39.638  1.00 25.00           C
ATOM    103  CA  GLU   103      27.770  32.258  41.672  1.00 25.00           C
ATOM    104  CA  LYS   104      26.825  35.850  40.782  1.00 25.00           C
ATOM    105  CA  SER   105      27.077  37.456  37.418  1.00 25.00           C
ATOM    106  CA  LEU   106      29.815  38.706  35.134  1.00 25.00           C
ATOM    107  CA  LEU   107      28.040  40.227  32.161  1.00 25.00           C
ATOM    108  CA  LEU   108      30.429  40.944  29.249  1.00 25.00           C
ATOM    109  CA  LEU   109      31.759  43.872  27.239  1.00 25.00           C
ATOM    110  CA  GLY   110      33.152  46.648  25.043  1.00 25.00           C
ATOM    111  CA  ASN   111      33.508  49.431  22.555  1.00 25.00           C
ATOM    112  CA  GLU   112      33.571  47.033  19.665  1.00 25.00           C
ATOM    113  CA  ARG   113      36.384  49.274  18.432  1.00 25.00           C
ATOM    114  CA  GLU   114      38.755  48.430  21.280  1.00 25.00           C
ATOM    115  CA  GLY   115      38.558  46.436  24.526  1.00 25.00           C
ATOM    116  CA  ILE   116      37.498  46.558  28.118  1.00 25.00           C
ATOM    117  CA  PRO   117      39.921  49.472  28.310  1.00 25.00           C
ATOM    118  CA  ALA   118      42.458  48.256  30.925  1.00 25.00           C
ATOM    119  CA  ASN   119      41.626  48.129  34.661  1.00 25.00           C
ATOM    120  CA  LEU   120      38.274  46.448  33.884  1.00 25.00           C
ATOM    121  CA  ILE   121      40.049  43.876  31.670  1.00 25.00           C
ATOM    122  CA  GLN   122      42.565  43.166  34.469  1.00 25.00           C
ATOM    123  CA  GLN   123      39.695  42.702  36.963  1.00 25.00           C
ATOM    124  CA  LEU   124      37.791  39.359  36.886  1.00 25.00           C
ATOM    125  CA  ASP   125      39.734  36.448  38.374  1.00 25.00           C
ATOM    126  CA  VAL   126      39.429  34.968  34.887  1.00 25.00           C
ATOM    127  CA  CYS   127      38.157  37.091  32.037  1.00 25.00           C
ATOM    128  CA  VAL   128      36.529  35.860  28.838  1.00 25.00           C
ATOM    129  CA  GLU   129      39.016  36.678  26.081  1.00 25.00           C
ATOM    130  CA  ILE   130      39.074  37.553  22.393  1.00 25.00           C
ATOM    131  CA  PRO   131      38.461  35.614  19.190  1.00 25.00           C
ATOM    132  CA  GLN   132      36.515  33.529  16.606  1.00 25.00           C
ATOM    133  CA  GLN   133      35.266  31.743  13.491  1.00 25.00           C
ATOM    134  CA  GLY   134      37.319  31.599  10.279  1.00 25.00           C
ATOM    135  CA  ILE   135      36.089  35.087   9.477  1.00 25.00           C
ATOM    136  CA  ILE   136      33.753  37.865  10.704  1.00 25.00           C
ATOM    137  CA  ARG   137      36.450  39.785  12.577  1.00 25.00           C
ATOM    138  CA  SER   138      34.528  39.847  15.848  1.00 25.00           C
ATOM    139  CA  LEU   139      30.984  40.188  16.995  1.00 25.00           C
ATOM    140  CA  ASN   140      28.397  42.914  17.488  1.00 25.00           C
ATOM    141  CA  VAL   141      28.645  42.351  21.205  1.00 25.00           C
ATOM    142  CA  HIS   142      24.870  41.951  21.719  1.00 25.00           C
ATOM    143  CA  VAL   143      25.038  38.375  20.356  1.00 25.00           C
ATOM    144  CA  SER   144      27.941  37.583  22.725  1.00 25.00           C
ATOM    145  CA  GLY   145      25.951  39.000  25.675  1.00 25.00           C
ATOM    146  CA  ALA   146      22.926  36.866  24.692  1.00 25.00           C
ATOM    147  CA  LEU   147      25.153  33.756  24.494  1.00 25.00           C
ATOM    148  CA  LEU   148      26.591  34.536  27.957  1.00 25.00           C
ATOM    149  CA  ILE   149      23.051  34.941  29.363  1.00 25.00           C
ATOM    150  CA  TRP   150      22.029  31.587  27.822  1.00 25.00           C
ATOM    151  CA  GLU   151      25.110  29.912  29.362  1.00 25.00           C
ATOM    152  CA  TYR   152      24.249  31.414  32.779  1.00 25.00           C
ATOM    153  CA  THR   153      20.654  30.132  32.462  1.00 25.00           C
ATOM    154  CA  ARG   154      21.950  26.642  31.566  1.00 25.00           C
ATOM    155  CA  GLN   155      24.281  26.701  34.604  1.00 25.00           C
ATOM    156  CA  GLN   156      21.361  27.737  36.855  1.00 25.00           C
ATOM    157  CA  LEU   157      19.513  24.448  36.012  1.00 25.00           C
ATOM    158  CA  LEU   158      22.119  21.761  36.483  1.00 25.00           C
ATOM    159  CA  SER   159      24.406  23.002  39.275  1.00 25.00           C
TER
END
