
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  113 (  113),  selected  113 , name T0338TS168_3-D2
# Molecule2: number of CA atoms  113 (  914),  selected  113 , name T0338_D2.pdb
# PARAMETERS: T0338TS168_3-D2.T0338_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   113       144 - 256         4.96     4.96
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26       181 - 206         1.96     7.04
  LONGEST_CONTINUOUS_SEGMENT:    26       182 - 207         1.80     6.92
  LCS_AVERAGE:     17.33

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21       157 - 177         0.93     6.93
  LCS_AVERAGE:     12.53

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  113
LCS_GDT     E     144     E     144      3   14  113     3    3    8   17   25   38   54   61   70   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     H     145     H     145      3   14  113     3    7   18   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     P     146     P     146      3   14  113     3   16   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     H     147     H     147     11   14  113    10   10   11   15   20   32   48   62   69   78   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     148     T     148     11   14  113    10   10   11   12   20   32   48   54   66   76   87   90   95  100  103  105  106  108  110  111 
LCS_GDT     D     149     D     149     11   14  113    10   10   11   18   27   39   55   65   72   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     V     150     V     150     11   14  113    10   10   11   22   35   50   61   68   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     V     151     V     151     11   14  113    10   10   11   15   22   36   48   62   69   78   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     K     152     K     152     11   14  113    10   10   11   12   23   36   48   62   71   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     C     153     C     153     11   25  113    10   10   16   24   47   52   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     154     T     154     11   25  113    10   10   11   16   27   47   61   69   73   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     Q     155     Q     155     11   25  113    10   10   11   17   24   37   55   65   72   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     156     L     156     11   25  113    10   10   12   21   28   46   58   66   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     V     157     V     157     21   25  113     5   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     R     158     R     158     21   25  113     4   16   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     A     159     A     159     21   25  113     5   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     S     160     S     160     21   25  113     3   10   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     K     161     K     161     21   25  113     9   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     D     162     D     162     21   25  113    11   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     163     L     163     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     A     164     A     164     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     Q     165     Q     165     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     166     T     166     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     S     167     S     167     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     Y     168     Y     168     21   25  113    12   18   25   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     F     169     F     169     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     M     170     M     170     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     A     171     A     171     21   25  113    12   18   25   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     172     T     172     21   25  113    12   18   25   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     N     173     N     173     21   25  113    12   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     S     174     S     174     21   25  113    12   18   25   39   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     175     L     175     21   25  113     7   18   25   33   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     H     176     H     176     21   25  113    11   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     177     L     177     21   25  113    11   18   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     178     T     178     20   24  113     3    8   18   24   29   43   53   66   74   80   86   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     179     T     179      4   24  113     3    4    6    9   12   19   26   38   53   71   75   81   90   95  100  104  106  107  109  110 
LCS_GDT     F     180     F     180      4   23  113     3    4    6    6   11   13   18   22   25   32   35   51   68   87   95  101  102  105  108  108 
LCS_GDT     C     181     C     181      3   26  113     3    3   17   24   26   37   52   63   69   78   83   90   97  102  103  105  106  108  110  111 
LCS_GDT     L     182     L     182      4   26  113     3    3    8   19   30   40   56   63   73   79   86   90   97  102  103  105  106  108  110  111 
LCS_GDT     Q     183     Q     183      4   26  113     3    6   11   21   33   46   60   69   73   80   86   93   97  102  103  105  106  108  110  111 
LCS_GDT     Y     184     Y     184     20   26  113     3    7   19   27   34   52   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     K     185     K     185     20   26  113    14   18   21   27   34   46   60   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     P     186     P     186     20   26  113    15   18   21   27   31   43   48   63   73   79   86   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     187     T     187     20   26  113    15   18   21   27   34   43   56   69   74   80   86   93   97  102  103  105  106  108  110  111 
LCS_GDT     V     188     V     188     20   26  113    15   18   21   27   34   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     I     189     I     189     20   26  113    15   18   21   27   34   47   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     A     190     A     190     20   26  113    15   18   21   27   34   51   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     C     191     C     191     20   26  113    15   18   21   31   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     V     192     V     192     20   26  113    15   18   21   27   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     C     193     C     193     20   26  113    15   18   21   27   43   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     I     194     I     194     20   26  113    15   18   21   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     H     195     H     195     20   26  113    15   18   21   27   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     196     L     196     20   26  113    15   18   21   27   34   53   61   69   73   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     A     197     A     197     20   26  113    15   18   21   27   47   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     C     198     C     198     20   26  113    15   18   21   27   34   53   61   69   73   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     K     199     K     199     20   26  113    15   18   21   27   34   43   56   69   73   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     W     200     W     200     20   26  113    15   18   21   27   34   43   57   69   73   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     S     201     S     201     20   26  113    15   18   21   27   34   47   57   69   73   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     N     202     N     202     20   26  113     3   18   21   27   34   44   56   69   73   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     W     203     W     203     20   26  113     3    7   17   23   30   43   61   69   73   79   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     E     204     E     204      5   26  113     3    4   17   40   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     I     205     I     205      4   26  113     3    8   22   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     P     206     P     206      4   26  113     3    8   24   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     V     207     V     207      4   26  113     3    6   18   40   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     S     208     S     208      3   18  113     3    3   19   20   20   33   48   63   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     209     T     209      3   18  113     2    7   13   21   32   48   58   66   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     D     210     D     210      3    7  113     3    8   19   39   47   52   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     G     211     G     211      3    7  113     3    3   11   27   40   51   60   69   73   78   86   90   97  102  103  105  106  108  110  111 
LCS_GDT     K     212     K     212      3    4  113     3    3    4    5    6   40   54   60   73   78   86   90   97  102  103  105  106  108  110  111 
LCS_GDT     H     213     H     213      5    5  113     3    5    5    5    6    6    7   10   14   21   28   86   92   99  103  104  106  108  110  111 
LCS_GDT     W     214     W     214      5    5  113     4    5    5    7    7   11   17   26   52   63   79   88   97  102  103  105  106  108  110  111 
LCS_GDT     W     215     W     215      5    5  113     4    5    5    5    5    6   21   47   62   76   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     E     216     E     216      5    5  113     4    5    5   10   23   32   48   54   68   77   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     Y     217     Y     217      5    5  113     4    5    6   10   15   26   31   45   51   69   80   85   91   98  102  105  106  108  110  111 
LCS_GDT     V     218     V     218      4    4  113     3    3    4    4    8   10   14   16   28   36   58   69   76   87   98  102  106  107  110  111 
LCS_GDT     D     219     D     219      4    4  113     3    3    4    7    8    9   15   18   29   45   59   74   80   92   98  102  106  107  110  111 
LCS_GDT     P     220     P     220      4    4  113     3    3    4    4   13   16   31   38   51   58   63   82   88   95   99  103  106  108  110  111 
LCS_GDT     T     221     T     221      3    4  113     1    3    4   10   17   26   31   42   52   63   76   82   87   94   99  103  106  108  110  111 
LCS_GDT     V     222     V     222      3    4  113     3    3    4    4   11   15   31   38   44   54   59   73   86   92   98  103  106  108  110  111 
LCS_GDT     T     223     T     223      3   19  113     3    6   12   18   27   44   56   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     224     L     224     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     E     225     E     225     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     226     L     226     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     227     L     227     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     D     228     D     228     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     E     229     E     229     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     230     L     230     18   19  113    17   17   21   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     231     T     231     18   19  113    17   17   24   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     H     232     H     232     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     E     233     E     233     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     F     234     F     234     18   19  113    17   17   19   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     235     L     235     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     Q     236     Q     236     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     I     237     I     237     18   19  113    17   17   19   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     238     L     238     18   19  113    17   17   19   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     E     239     E     239     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     K     240     K     240     18   19  113    17   17   26   41   48   53   61   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     T     241     T     241     18   19  113     3    4   16   37   47   52   60   69   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     P     242     P     242     14   19  113    12   13   13   13   18   27   43   59   69   74   85   93   97  102  103  105  106  108  110  111 
LCS_GDT     N     243     N     243     14   15  113    12   13   13   22   34   49   58   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     R     244     R     244     14   15  113    12   13   13   13   23   42   58   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     L     245     L     245     14   15  113    12   13   13   13   23   38   58   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     K     246     K     246     14   15  113    12   13   13   18   31   45   58   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     K     247     K     247     14   15  113    12   13   13   19   31   44   57   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     I     248     I     248     14   15  113    12   13   13   17   31   44   58   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     R     249     R     249     14   15  113    12   13   13   14   34   46   58   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     N     250     N     250     14   15  113    12   13   13   15   31   40   53   63   72   80   83   91   97  102  103  105  106  108  110  111 
LCS_GDT     W     251     W     251     14   15  113    12   13   13   17   29   40   50   61   72   80   83   90   97  102  103  105  106  108  110  111 
LCS_GDT     R     252     R     252     14   15  113    12   13   13   21   31   44   57   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_GDT     A     253     A     253     14   15  113    12   13   13   13   31   40   53   62   72   80   83   90   97  102  103  105  106  108  110  111 
LCS_GDT     N     254     N     254     14   15  113     3    3    4    7   20   22   39   49   64   75   83   90   94   99  103  105  106  107  110  111 
LCS_GDT     Q     255     Q     255     14   15  113    11   13   13   20   31   40   53   61   72   80   83   90   96  102  103  105  106  108  110  111 
LCS_GDT     A     256     A     256      3   15  113     0    3    3    4    7   10   58   65   74   80   87   93   97  102  103  105  106  108  110  111 
LCS_AVERAGE  LCS_A:  43.29  (  12.53   17.33  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     18     26     41     48     53     61     69     74     80     87     93     97    102    103    105    106    108    110    111 
GDT PERCENT_CA  15.04  15.93  23.01  36.28  42.48  46.90  53.98  61.06  65.49  70.80  76.99  82.30  85.84  90.27  91.15  92.92  93.81  95.58  97.35  98.23
GDT RMS_LOCAL    0.30   0.43   1.01   1.46   1.67   1.88   2.23   2.49   2.89   3.13   3.47   3.64   3.77   4.00   4.05   4.19   4.25   4.52   4.74   4.77
GDT RMS_ALL_CA   8.89   8.41   5.64   5.45   5.40   5.42   5.29   5.46   5.11   5.21   5.02   5.01   5.10   5.04   5.06   5.01   5.02   4.97   4.98   4.97

#      Molecule1      Molecule2       DISTANCE
LGA    E     144      E     144          5.726
LGA    H     145      H     145          1.576
LGA    P     146      P     146          1.985
LGA    H     147      H     147          8.147
LGA    T     148      T     148          9.970
LGA    D     149      D     149          6.822
LGA    V     150      V     150          4.207
LGA    V     151      V     151          7.848
LGA    K     152      K     152          7.965
LGA    C     153      C     153          3.673
LGA    T     154      T     154          3.889
LGA    Q     155      Q     155          7.015
LGA    L     156      L     156          5.436
LGA    V     157      V     157          0.543
LGA    R     158      R     158          1.136
LGA    A     159      A     159          0.430
LGA    S     160      S     160          0.772
LGA    K     161      K     161          1.379
LGA    D     162      D     162          1.879
LGA    L     163      L     163          2.068
LGA    A     164      A     164          1.545
LGA    Q     165      Q     165          1.327
LGA    T     166      T     166          1.886
LGA    S     167      S     167          1.991
LGA    Y     168      Y     168          1.633
LGA    F     169      F     169          1.495
LGA    M     170      M     170          1.973
LGA    A     171      A     171          2.050
LGA    T     172      T     172          1.375
LGA    N     173      N     173          1.681
LGA    S     174      S     174          2.688
LGA    L     175      L     175          2.483
LGA    H     176      H     176          1.537
LGA    L     177      L     177          1.925
LGA    T     178      T     178          4.828
LGA    T     179      T     179          8.028
LGA    F     180      F     180         10.642
LGA    C     181      C     181          4.912
LGA    L     182      L     182          4.129
LGA    Q     183      Q     183          3.216
LGA    Y     184      Y     184          3.467
LGA    K     185      K     185          3.915
LGA    P     186      P     186          4.974
LGA    T     187      T     187          3.989
LGA    V     188      V     188          2.896
LGA    I     189      I     189          3.519
LGA    A     190      A     190          3.358
LGA    C     191      C     191          2.021
LGA    V     192      V     192          2.428
LGA    C     193      C     193          2.606
LGA    I     194      I     194          1.698
LGA    H     195      H     195          2.391
LGA    L     196      L     196          3.030
LGA    A     197      A     197          2.500
LGA    C     198      C     198          2.805
LGA    K     199      K     199          3.729
LGA    W     200      W     200          3.929
LGA    S     201      S     201          3.720
LGA    N     202      N     202          3.945
LGA    W     203      W     203          3.626
LGA    E     204      E     204          2.422
LGA    I     205      I     205          2.469
LGA    P     206      P     206          2.287
LGA    V     207      V     207          2.806
LGA    S     208      S     208          8.547
LGA    T     209      T     209          6.700
LGA    D     210      D     210          3.661
LGA    G     211      G     211          3.266
LGA    K     212      K     212          4.242
LGA    H     213      H     213          7.110
LGA    W     214      W     214          6.966
LGA    W     215      W     215          7.259
LGA    E     216      E     216          9.249
LGA    Y     217      Y     217         11.152
LGA    V     218      V     218         14.170
LGA    D     219      D     219         14.247
LGA    P     220      P     220         13.415
LGA    T     221      T     221         13.735
LGA    V     222      V     222         13.248
LGA    T     223      T     223          7.080
LGA    L     224      L     224          2.069
LGA    E     225      E     225          2.095
LGA    L     226      L     226          1.607
LGA    L     227      L     227          1.385
LGA    D     228      D     228          2.120
LGA    E     229      E     229          2.228
LGA    L     230      L     230          1.685
LGA    T     231      T     231          1.527
LGA    H     232      H     232          2.445
LGA    E     233      E     233          2.245
LGA    F     234      F     234          1.279
LGA    L     235      L     235          2.009
LGA    Q     236      Q     236          2.471
LGA    I     237      I     237          1.876
LGA    L     238      L     238          1.412
LGA    E     239      E     239          2.389
LGA    K     240      K     240          2.535
LGA    T     241      T     241          3.332
LGA    P     242      P     242          8.541
LGA    N     243      N     243          6.946
LGA    R     244      R     244          5.750
LGA    L     245      L     245          6.576
LGA    K     246      K     246          7.349
LGA    K     247      K     247          6.423
LGA    I     248      I     248          5.742
LGA    R     249      R     249          6.588
LGA    N     250      N     250          7.950
LGA    W     251      W     251          7.397
LGA    R     252      R     252          6.768
LGA    A     253      A     253          8.349
LGA    N     254      N     254          8.399
LGA    Q     255      Q     255          8.187
LGA    A     256      A     256          7.299

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  113  113    4.0     69    2.49    51.549    45.149     2.667

LGA_LOCAL      RMSD =  2.487  Number of atoms =   69  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.528  Number of atoms =  113 
Std_ALL_ATOMS  RMSD =  4.961  (standard rmsd on all 113 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.061375 * X  +  -0.653038 * Y  +   0.754834 * Z  + -29.376808
  Y_new =  -0.364513 * X  +  -0.689359 * Y  +  -0.626031 * Z  +  21.820314
  Z_new =   0.929173 * X  +  -0.313570 * Y  +  -0.195732 * Z  +  69.640121 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.128825    1.012768  [ DEG:  -121.9727     58.0273 ]
  Theta =  -1.192170   -1.949422  [ DEG:   -68.3063   -111.6937 ]
  Phi   =  -1.737606    1.403987  [ DEG:   -99.5575     80.4425 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS168_3-D2                               
REMARK     2: T0338_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS168_3-D2.T0338_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  113  113   4.0   69   2.49  45.149     4.96
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS168_3-D2
PFRMAT TS
TARGET T0338
MODEL 3
PARENT N/A
ATOM    144  CA  GLU   144     -22.460  15.156  60.198  1.00 25.00           C
ATOM    145  CA  HIS   145     -24.828  17.402  62.086  1.00 25.00           C
ATOM    146  CA  PRO   146     -27.364  15.793  64.392  1.00 25.00           C
ATOM    147  CA  HIS   147     -28.432  12.368  63.079  1.00 25.00           C
ATOM    148  CA  THR   148     -29.965   8.961  63.918  1.00 25.00           C
ATOM    149  CA  ASP   149     -27.967   8.838  67.184  1.00 25.00           C
ATOM    150  CA  VAL   150     -29.167  12.363  68.079  1.00 25.00           C
ATOM    151  CA  VAL   151     -32.788  11.336  67.373  1.00 25.00           C
ATOM    152  CA  LYS   152     -32.370   8.243  69.591  1.00 25.00           C
ATOM    153  CA  CYS   153     -30.934  10.418  72.396  1.00 25.00           C
ATOM    154  CA  THR   154     -33.891  12.831  72.072  1.00 25.00           C
ATOM    155  CA  GLN   155     -36.340   9.892  72.249  1.00 25.00           C
ATOM    156  CA  LEU   156     -34.573   8.575  75.380  1.00 25.00           C
ATOM    157  CA  VAL   157     -35.813  11.869  76.906  1.00 25.00           C
ATOM    158  CA  ARG   158     -36.683  13.487  80.267  1.00 25.00           C
ATOM    159  CA  ALA   159     -33.390  15.304  79.681  1.00 25.00           C
ATOM    160  CA  SER   160     -33.375  18.237  82.128  1.00 25.00           C
ATOM    161  CA  LYS   161     -31.200  20.880  80.341  1.00 25.00           C
ATOM    162  CA  ASP   162     -27.639  19.792  81.237  1.00 25.00           C
ATOM    163  CA  LEU   163     -27.766  17.073  78.543  1.00 25.00           C
ATOM    164  CA  ALA   164     -28.980  19.640  75.973  1.00 25.00           C
ATOM    165  CA  GLN   165     -26.129  22.002  76.951  1.00 25.00           C
ATOM    166  CA  THR   166     -23.602  19.150  76.571  1.00 25.00           C
ATOM    167  CA  SER   167     -25.028  18.313  73.117  1.00 25.00           C
ATOM    168  CA  TYR   168     -24.756  21.991  72.086  1.00 25.00           C
ATOM    169  CA  PHE   169     -21.122  22.085  73.290  1.00 25.00           C
ATOM    170  CA  MET   170     -20.352  18.909  71.293  1.00 25.00           C
ATOM    171  CA  ALA   171     -21.951  20.453  68.174  1.00 25.00           C
ATOM    172  CA  THR   172     -19.862  23.629  68.645  1.00 25.00           C
ATOM    173  CA  ASN   173     -16.686  21.517  68.992  1.00 25.00           C
ATOM    174  CA  SER   174     -17.576  19.610  65.791  1.00 25.00           C
ATOM    175  CA  LEU   175     -18.140  22.918  63.947  1.00 25.00           C
ATOM    176  CA  HIS   176     -14.752  24.211  65.178  1.00 25.00           C
ATOM    177  CA  LEU   177     -12.862  20.993  65.996  1.00 25.00           C
ATOM    178  CA  THR   178     -12.294  20.761  62.223  1.00 25.00           C
ATOM    179  CA  THR   179     -12.106  24.203  60.615  1.00 25.00           C
ATOM    180  CA  PHE   180     -15.803  24.135  59.723  1.00 25.00           C
ATOM    181  CA  CYS   181     -16.796  20.499  59.526  1.00 25.00           C
ATOM    182  CA  LEU   182     -17.087  17.018  60.916  1.00 25.00           C
ATOM    183  CA  GLN   183     -15.290  13.616  61.095  1.00 25.00           C
ATOM    184  CA  TYR   184     -16.279  10.447  62.865  1.00 25.00           C
ATOM    185  CA  LYS   185     -19.929  11.497  62.770  1.00 25.00           C
ATOM    186  CA  PRO   186     -20.284  14.762  64.718  1.00 25.00           C
ATOM    187  CA  THR   187     -23.683  13.223  65.580  1.00 25.00           C
ATOM    188  CA  VAL   188     -21.946  10.413  67.518  1.00 25.00           C
ATOM    189  CA  ILE   189     -19.856  12.989  69.431  1.00 25.00           C
ATOM    190  CA  ALA   190     -23.025  14.966  70.279  1.00 25.00           C
ATOM    191  CA  CYS   191     -24.720  11.764  71.519  1.00 25.00           C
ATOM    192  CA  VAL   192     -21.668  10.960  73.689  1.00 25.00           C
ATOM    193  CA  CYS   193     -21.739  14.502  75.144  1.00 25.00           C
ATOM    194  CA  ILE   194     -25.472  14.137  75.918  1.00 25.00           C
ATOM    195  CA  HIS   195     -24.811  10.782  77.644  1.00 25.00           C
ATOM    196  CA  LEU   196     -22.014  12.374  79.720  1.00 25.00           C
ATOM    197  CA  ALA   197     -24.353  15.236  80.721  1.00 25.00           C
ATOM    198  CA  CYS   198     -27.044  12.712  81.747  1.00 25.00           C
ATOM    199  CA  LYS   199     -24.477  10.787  83.838  1.00 25.00           C
ATOM    200  CA  TRP   200     -23.383  14.041  85.535  1.00 25.00           C
ATOM    201  CA  SER   201     -27.037  14.897  86.303  1.00 25.00           C
ATOM    202  CA  ASN   202     -27.244  11.570  87.990  1.00 25.00           C
ATOM    203  CA  TRP   203     -29.990   9.514  86.404  1.00 25.00           C
ATOM    204  CA  GLU   204     -27.890   6.545  85.365  1.00 25.00           C
ATOM    205  CA  ILE   205     -29.230   6.896  81.789  1.00 25.00           C
ATOM    206  CA  PRO   206     -31.596   3.967  82.237  1.00 25.00           C
ATOM    207  CA  VAL   207     -33.576   0.889  81.198  1.00 25.00           C
ATOM    208  CA  SER   208     -32.868  -1.971  83.517  1.00 25.00           C
ATOM    209  CA  THR   209     -34.924  -4.088  81.194  1.00 25.00           C
ATOM    210  CA  ASP   210     -36.236  -4.150  77.626  1.00 25.00           C
ATOM    211  CA  GLY   211     -37.306  -1.298  75.352  1.00 25.00           C
ATOM    212  CA  LYS   212     -36.730  -3.059  72.018  1.00 25.00           C
ATOM    213  CA  HIS   213     -33.207  -3.971  71.127  1.00 25.00           C
ATOM    214  CA  TRP   214     -30.812  -1.054  71.522  1.00 25.00           C
ATOM    215  CA  TRP   215     -30.879  -0.076  75.224  1.00 25.00           C
ATOM    216  CA  GLU   216     -28.177  -2.680  75.986  1.00 25.00           C
ATOM    217  CA  TYR   217     -26.026  -1.324  73.122  1.00 25.00           C
ATOM    218  CA  VAL   218     -25.613  -4.424  70.891  1.00 25.00           C
ATOM    219  CA  ASP   219     -23.246  -6.607  68.786  1.00 25.00           C
ATOM    220  CA  PRO   220     -19.732  -5.335  69.491  1.00 25.00           C
ATOM    221  CA  THR   221     -18.019  -5.426  72.882  1.00 25.00           C
ATOM    222  CA  VAL   222     -16.386  -3.278  75.521  1.00 25.00           C
ATOM    223  CA  THR   223     -18.964  -0.494  75.424  1.00 25.00           C
ATOM    224  CA  LEU   224     -21.475  -0.437  72.569  1.00 25.00           C
ATOM    225  CA  GLU   225     -18.318  -0.534  70.403  1.00 25.00           C
ATOM    226  CA  LEU   226     -19.496   2.577  68.505  1.00 25.00           C
ATOM    227  CA  LEU   227     -20.150   4.381  71.818  1.00 25.00           C
ATOM    228  CA  ASP   228     -16.652   3.433  73.054  1.00 25.00           C
ATOM    229  CA  GLU   229     -15.119   4.745  69.799  1.00 25.00           C
ATOM    230  CA  LEU   230     -17.055   8.027  70.182  1.00 25.00           C
ATOM    231  CA  THR   231     -15.822   8.363  73.793  1.00 25.00           C
ATOM    232  CA  HIS   232     -12.220   7.753  72.644  1.00 25.00           C
ATOM    233  CA  GLU   233     -12.610  10.417  69.921  1.00 25.00           C
ATOM    234  CA  PHE   234     -13.983  12.890  72.502  1.00 25.00           C
ATOM    235  CA  LEU   235     -11.022  12.155  74.817  1.00 25.00           C
ATOM    236  CA  GLN   236      -8.584  12.726  71.920  1.00 25.00           C
ATOM    237  CA  ILE   237     -10.298  16.051  71.101  1.00 25.00           C
ATOM    238  CA  LEU   238     -10.048  17.114  74.770  1.00 25.00           C
ATOM    239  CA  GLU   239      -6.326  16.208  74.804  1.00 25.00           C
ATOM    240  CA  LYS   240      -5.776  18.249  71.610  1.00 25.00           C
ATOM    241  CA  THR   241      -3.958  21.485  70.845  1.00 25.00           C
ATOM    242  CA  PRO   242      -5.582  23.515  68.083  1.00 25.00           C
ATOM    243  CA  ASN   243      -4.523  26.654  70.006  1.00 25.00           C
ATOM    244  CA  ARG   244      -8.179  27.768  70.248  1.00 25.00           C
ATOM    245  CA  LEU   245      -9.175  24.307  71.548  1.00 25.00           C
ATOM    246  CA  LYS   246      -6.379  24.457  74.162  1.00 25.00           C
ATOM    247  CA  LYS   247      -7.560  27.931  75.262  1.00 25.00           C
ATOM    248  CA  ILE   248     -11.152  26.637  75.574  1.00 25.00           C
ATOM    249  CA  ARG   249      -9.929  23.677  77.673  1.00 25.00           C
ATOM    250  CA  ASN   250      -7.968  26.062  79.939  1.00 25.00           C
ATOM    251  CA  TRP   251     -11.077  28.257  80.360  1.00 25.00           C
ATOM    252  CA  ARG   252     -13.164  25.174  81.255  1.00 25.00           C
ATOM    253  CA  ALA   253     -10.536  24.113  83.831  1.00 25.00           C
ATOM    254  CA  ASN   254     -12.737  25.339  86.739  1.00 25.00           C
ATOM    255  CA  GLN   255     -15.317  27.798  85.414  1.00 25.00           C
ATOM    256  CA  ALA   256     -18.136  26.477  83.251  1.00 25.00           C
TER
END
