
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  113 (  113),  selected  113 , name T0338TS393_1-D2
# Molecule2: number of CA atoms  113 (  914),  selected  113 , name T0338_D2.pdb
# PARAMETERS: T0338TS393_1-D2.T0338_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    75       144 - 218         4.94     6.10
  LCS_AVERAGE:     54.64

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25       157 - 181         1.92     8.98
  LCS_AVERAGE:     16.31

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       159 - 177         0.94    12.89
  LCS_AVERAGE:     11.39

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  113
LCS_GDT     E     144     E     144      3   15   75     3    4    7   13   20   29   42   53   64   77   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     H     145     H     145     13   15   75     3    3    6   13   20   29   39   50   64   75   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     P     146     P     146     13   15   75    12   12   12   13   15   22   32   46   63   78   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     H     147     H     147     13   15   75    12   12   12   13   14   15   20   26   36   42   54   72   81   88   97  100  103  106  107  107 
LCS_GDT     T     148     T     148     13   15   75    12   12   12   13   14   17   26   31   49   58   69   77   86   92   98  100  103  106  107  107 
LCS_GDT     D     149     D     149     13   15   75    12   12   12   13   20   30   44   56   67   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     V     150     V     150     13   15   75    12   12   12   13   14   19   33   48   64   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     V     151     V     151     13   15   75    12   12   12   13   15   17   31   44   56   65   76   85   91   96   98  100  103  106  107  107 
LCS_GDT     K     152     K     152     13   15   75    12   12   12   18   19   29   39   52   64   78   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     C     153     C     153     13   15   75    12   12   14   20   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     154     T     154     13   15   75    12   12   12   13   14   30   37   50   64   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     Q     155     Q     155     13   15   75    12   12   12   13   20   29   39   52   64   78   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     156     L     156     13   23   75    12   12   12   14   26   38   51   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     V     157     V     157     13   25   75    12   12   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     R     158     R     158      4   25   75     3    7   14   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     A     159     A     159     19   25   75     3   10   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     S     160     S     160     19   25   75     5    7   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     K     161     K     161     19   25   75    12   16   18   21   32   40   52   61   73   78   84   89   92   96   98  100  103  106  107  107 
LCS_GDT     D     162     D     162     19   25   75    12   16   18   21   32   40   52   61   73   78   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     163     L     163     19   25   75    12   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     A     164     A     164     19   25   75    12   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     Q     165     Q     165     19   25   75    12   16   18   21   32   40   51   61   73   78   84   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     166     T     166     19   25   75    12   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     S     167     S     167     19   25   75    12   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     Y     168     Y     168     19   25   75    11   16   18   21   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     F     169     F     169     19   25   75    11   16   18   21   32   40   52   61   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     M     170     M     170     19   25   75    12   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     A     171     A     171     19   25   75    12   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     172     T     172     19   25   75    12   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     N     173     N     173     19   25   75    12   16   18   23   32   38   51   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     S     174     S     174     19   25   75    12   16   18   21   26   37   50   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     175     L     175     19   25   75     5   16   18   21   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     H     176     H     176     19   25   75     5   16   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     177     L     177     19   25   75     4    7   18   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     178     T     178      4   25   75     4    5   12   21   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     179     T     179      4   25   75     3    3    9   19   28   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     F     180     F     180      4   25   75     3    4    5   12   29   38   49   60   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     C     181     C     181      4   25   75     3    4    4   19   26   38   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     182     L     182      4   22   75     3    4   21   23   28   32   42   54   73   78   84   89   92   96   98  100  103  106  107  107 
LCS_GDT     Q     183     Q     183      4   22   75     3    5   21   23   28   36   50   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     Y     184     Y     184      3   22   75     3    5   14   23   28   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     K     185     K     185     17   22   75     7   17   17   18   20   32   41   53   73   78   84   89   92   96   98  100  103  106  107  107 
LCS_GDT     P     186     P     186     17   22   75    16   17   21   23   28   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     187     T     187     17   22   75    16   17   17   18   30   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     V     188     V     188     17   22   75    16   17   17   18   26   36   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     I     189     I     189     17   22   75    16   17   17   18   28   36   48   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     A     190     A     190     17   22   75    16   17   21   23   28   38   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     C     191     C     191     17   22   75    16   17   17   22   30   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     V     192     V     192     17   22   75    16   17   17   18   26   36   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     C     193     C     193     17   22   75    16   17   17   19   26   36   48   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     I     194     I     194     17   22   75    16   17   17   23   28   37   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     H     195     H     195     17   22   75    16   17   17   19   28   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     196     L     196     17   22   75    16   17   17   18   26   36   48   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     A     197     A     197     17   22   75    16   17   17   18   26   35   45   58   70   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     C     198     C     198     17   22   75    16   17   17   23   28   38   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     K     199     K     199     17   22   75    16   17   17   18   28   38   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     W     200     W     200     17   22   75    16   17   17   18   24   36   45   58   69   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     S     201     S     201     17   22   75    16   17   17   18   20   34   41   57   69   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     N     202     N     202      4   22   75     3    3    6    8   15   22   32   49   61   71   81   89   92   96   98  100  103  106  107  107 
LCS_GDT     W     203     W     203      4   22   75     3    3    7   14   25   36   49   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     E     204     E     204      4   21   75     3    3    6   13   23   36   47   60   71   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     I     205     I     205      4   21   75     3    4   11   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     P     206     P     206      3    6   75     3    5   11   16   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     V     207     V     207      4    6   75     3    3   10   14   25   36   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     S     208     S     208      4    5   75     3    3   10   14   23   34   51   61   72   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     209     T     209      4    6   75     5    6   14   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     D     210     D     210      4    6   75     5    7   14   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     G     211     G     211      4    6   75     1    4    7   21   30   36   48   60   73   78   84   89   92   96   98  100  103  106  107  107 
LCS_GDT     K     212     K     212      4    6   75     3    4   11   17   26   31   44   59   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     H     213     H     213      5    6   75     4    5    5    5   19   23   30   39   49   59   72   79   91   96   96   98  102  106  107  107 
LCS_GDT     W     214     W     214      5    6   75     4    5    5   11   15   23   27   42   49   58   67   77   91   96   96   99  103  106  107  107 
LCS_GDT     W     215     W     215      5    6   75     4    5   15   18   25   30   39   52   67   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     E     216     E     216      5    6   75     4    5    6    8   17   22   33   46   61   74   83   89   92   96   98  100  103  106  107  107 
LCS_GDT     Y     217     Y     217      5    6   75     4    5    5    6   10   13   16   25   27   44   61   71   75   88   93   99  102  106  107  107 
LCS_GDT     V     218     V     218      3    6   75     3    3    3    7    8   10   15   16   19   21   25   31   46   52   58   65   70   88   98  103 
LCS_GDT     D     219     D     219      3    6   28     3    3    4    5    8   11   15   17   19   21   25   31   33   52   58   64   70   79   81   85 
LCS_GDT     P     220     P     220      4    6   28     3    3    4    7    7   11   13   15   17   19   24   25   46   52   58   64   70   79   90   90 
LCS_GDT     T     221     T     221      4    6   36     3    3    5    5   11   14   16   25   38   42   60   66   76   86   92   99  102  106  107  107 
LCS_GDT     V     222     V     222      4    6   36     3    3    4    5    5    7   10   26   40   51   65   76   86   92   98  100  103  106  107  107 
LCS_GDT     T     223     T     223     18   21   36     3    3    7   16   23   28   32   48   63   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     224     L     224     18   21   36    16   17   21   23   30   38   45   57   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     E     225     E     225     18   21   36    16   17   21   23   31   38   49   61   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     226     L     226     18   21   36    14   17   21   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     227     L     227     18   21   36    16   17   21   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     D     228     D     228     18   21   36    16   17   21   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     E     229     E     229     18   21   36    16   17   21   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     230     L     230     18   21   36    16   17   21   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     231     T     231     18   21   36    16   17   21   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     H     232     H     232     18   21   36    16   17   21   23   32   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     E     233     E     233     18   21   36    16   17   21   23   28   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     F     234     F     234     18   21   36    16   17   21   23   28   38   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     235     L     235     18   21   36    16   17   21   23   28   40   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     Q     236     Q     236     18   21   36    16   17   21   23   28   38   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     I     237     I     237     18   21   36    16   17   21   23   28   36   48   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     238     L     238     18   21   36    16   17   21   23   28   36   48   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     E     239     E     239     18   21   36    16   17   21   23   28   38   51   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     K     240     K     240     18   21   36    16   17   21   23   28   36   48   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     T     241     T     241     18   21   36    13   14   14   23   28   37   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     P     242     P     242     14   21   36    13   14   14   23   28   36   48   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     N     243     N     243     14   21   36    13   14   14   16   28   38   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     R     244     R     244     14   16   36    13   14   14   15   16   37   52   62   73   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     L     245     L     245     14   16   36    13   14   14   15   19   30   42   56   68   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     K     246     K     246     14   16   36    13   14   14   15   20   30   43   56   68   79   85   89   92   96   98  100  103  106  107  107 
LCS_GDT     K     247     K     247     14   16   36    13   14   14   15   16   20   28   42   57   70   81   89   92   96   98  100  103  106  107  107 
LCS_GDT     I     248     I     248     14   16   36    13   14   14   15   16   16   20   24   37   50   63   74   82   93   98  100  103  106  107  107 
LCS_GDT     R     249     R     249     14   16   36    13   14   14   15   16   16   22   33   43   51   63   74   85   93   98  100  103  106  107  107 
LCS_GDT     N     250     N     250     14   16   36    13   14   14   15   16   19   23   33   43   51   67   79   87   93   98  100  103  106  107  107 
LCS_GDT     W     251     W     251     14   16   36    13   14   14   15   16   16   20   24   29   31   34   41   52   56   74   92  100  104  107  107 
LCS_GDT     R     252     R     252     14   16   36    13   14   14   15   16   16   19   22   29   30   33   37   52   56   66   81   85   96  106  106 
LCS_GDT     A     253     A     253     14   16   36    13   14   14   15   16   16   20   24   29   31   36   52   58   70   80   92  100  103  107  107 
LCS_GDT     N     254     N     254      3   16   36     3    3    7    9   14   20   23   29   38   50   62   74   84   91   98  100  103  106  107  107 
LCS_GDT     Q     255     Q     255      3    5   36     3    3    5    9   14   20   23   35   41   53   73   79   84   93   98  100  103  106  107  107 
LCS_GDT     A     256     A     256      0    5   36     0    0    3    3    9   13   19   25   32   40   54   64   77   86   92   99  102  106  107  107 
LCS_AVERAGE  LCS_A:  27.45  (  11.39   16.31   54.64 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     17     21     23     32     40     52     62     73     79     85     89     92     96     98    100    103    106    107    107 
GDT PERCENT_CA  14.16  15.04  18.58  20.35  28.32  35.40  46.02  54.87  64.60  69.91  75.22  78.76  81.42  84.96  86.73  88.50  91.15  93.81  94.69  94.69
GDT RMS_LOCAL    0.25   0.30   0.83   1.03   1.83   2.23   2.66   2.95   3.21   3.50   3.73   3.83   3.94   4.18   4.42   4.58   4.75   4.97   5.05   5.05
GDT RMS_ALL_CA  11.77  10.61   9.65   9.44   7.37   7.22   6.93   6.76   7.06   6.52   6.31   6.46   6.40   6.35   6.11   6.03   5.99   5.94   5.92   5.92

#      Molecule1      Molecule2       DISTANCE
LGA    E     144      E     144          7.515
LGA    H     145      H     145          7.731
LGA    P     146      P     146          6.303
LGA    H     147      H     147         11.109
LGA    T     148      T     148         10.960
LGA    D     149      D     149          5.623
LGA    V     150      V     150          6.106
LGA    V     151      V     151          9.442
LGA    K     152      K     152          7.259
LGA    C     153      C     153          1.935
LGA    T     154      T     154          5.911
LGA    Q     155      Q     155          7.114
LGA    L     156      L     156          3.940
LGA    V     157      V     157          2.857
LGA    R     158      R     158          1.422
LGA    A     159      A     159          1.711
LGA    S     160      S     160          3.185
LGA    K     161      K     161          5.016
LGA    D     162      D     162          4.659
LGA    L     163      L     163          2.606
LGA    A     164      A     164          3.637
LGA    Q     165      Q     165          4.811
LGA    T     166      T     166          3.719
LGA    S     167      S     167          2.340
LGA    Y     168      Y     168          3.711
LGA    F     169      F     169          4.193
LGA    M     170      M     170          3.156
LGA    A     171      A     171          2.437
LGA    T     172      T     172          2.967
LGA    N     173      N     173          3.930
LGA    S     174      S     174          3.774
LGA    L     175      L     175          2.335
LGA    H     176      H     176          3.070
LGA    L     177      L     177          2.392
LGA    T     178      T     178          1.703
LGA    T     179      T     179          2.607
LGA    F     180      F     180          4.513
LGA    C     181      C     181          3.549
LGA    L     182      L     182          4.970
LGA    Q     183      Q     183          3.920
LGA    Y     184      Y     184          2.734
LGA    K     185      K     185          5.178
LGA    P     186      P     186          3.073
LGA    T     187      T     187          1.974
LGA    V     188      V     188          3.299
LGA    I     189      I     189          3.916
LGA    A     190      A     190          2.829
LGA    C     191      C     191          1.678
LGA    V     192      V     192          3.141
LGA    C     193      C     193          3.996
LGA    I     194      I     194          3.090
LGA    H     195      H     195          2.018
LGA    L     196      L     196          3.863
LGA    A     197      A     197          4.712
LGA    C     198      C     198          3.162
LGA    K     199      K     199          2.467
LGA    W     200      W     200          4.961
LGA    S     201      S     201          5.262
LGA    N     202      N     202          6.294
LGA    W     203      W     203          3.690
LGA    E     204      E     204          4.442
LGA    I     205      I     205          1.575
LGA    P     206      P     206          3.684
LGA    V     207      V     207          3.756
LGA    S     208      S     208          4.095
LGA    T     209      T     209          2.303
LGA    D     210      D     210          1.412
LGA    G     211      G     211          5.429
LGA    K     212      K     212          4.863
LGA    H     213      H     213          8.875
LGA    W     214      W     214          9.282
LGA    W     215      W     215          5.453
LGA    E     216      E     216          7.891
LGA    Y     217      Y     217         12.396
LGA    V     218      V     218         16.450
LGA    D     219      D     219         18.322
LGA    P     220      P     220         18.896
LGA    T     221      T     221         13.222
LGA    V     222      V     222         10.499
LGA    T     223      T     223          6.031
LGA    L     224      L     224          5.208
LGA    E     225      E     225          4.919
LGA    L     226      L     226          3.612
LGA    L     227      L     227          3.058
LGA    D     228      D     228          3.560
LGA    E     229      E     229          3.049
LGA    L     230      L     230          1.766
LGA    T     231      T     231          1.787
LGA    H     232      H     232          2.009
LGA    E     233      E     233          2.169
LGA    F     234      F     234          2.313
LGA    L     235      L     235          2.051
LGA    Q     236      Q     236          1.735
LGA    I     237      I     237          3.623
LGA    L     238      L     238          3.961
LGA    E     239      E     239          2.730
LGA    K     240      K     240          3.835
LGA    T     241      T     241          2.154
LGA    P     242      P     242          3.706
LGA    N     243      N     243          1.670
LGA    R     244      R     244          3.569
LGA    L     245      L     245          5.239
LGA    K     246      K     246          5.285
LGA    K     247      K     247          6.610
LGA    I     248      I     248          9.837
LGA    R     249      R     249         11.025
LGA    N     250      N     250         10.589
LGA    W     251      W     251         13.534
LGA    R     252      R     252         16.153
LGA    A     253      A     253         16.346
LGA    N     254      N     254         12.576
LGA    Q     255      Q     255         11.108
LGA    A     256      A     256         13.837

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  113  113    4.0     62    2.95    44.690    40.169     2.030

LGA_LOCAL      RMSD =  2.954  Number of atoms =   62  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.628  Number of atoms =  113 
Std_ALL_ATOMS  RMSD =  5.837  (standard rmsd on all 113 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.837499 * X  +  -0.073189 * Y  +   0.541515 * Z  + -26.768423
  Y_new =   0.544525 * X  +   0.194645 * Y  +  -0.815847 * Z  +  22.456808
  Z_new =  -0.045692 * X  +   0.978139 * Y  +   0.202868 * Z  +  68.668877 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.366294   -1.775299  [ DEG:    78.2829   -101.7171 ]
  Theta =   0.045708    3.095885  [ DEG:     2.6189    177.3811 ]
  Phi   =   0.576501   -2.565091  [ DEG:    33.0311   -146.9689 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS393_1-D2                               
REMARK     2: T0338_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS393_1-D2.T0338_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  113  113   4.0   62   2.95  40.169     5.84
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS393_1-D2
PFRMAT TS
TARGET T0338
MODEL 1
PARENT N/A
ATOM    144  CA  GLU   144     -23.815  11.650  56.240  1.00 25.00           C
ATOM    145  CA  HIS   145     -25.080  11.313  59.872  1.00 25.00           C
ATOM    146  CA  PRO   146     -28.451  12.623  61.080  1.00 25.00           C
ATOM    147  CA  HIS   147     -32.074  11.529  60.682  1.00 25.00           C
ATOM    148  CA  THR   148     -32.354   8.265  62.666  1.00 25.00           C
ATOM    149  CA  ASP   149     -29.940   9.635  65.305  1.00 25.00           C
ATOM    150  CA  VAL   150     -32.002  12.852  65.559  1.00 25.00           C
ATOM    151  CA  VAL   151     -35.204  10.794  65.987  1.00 25.00           C
ATOM    152  CA  LYS   152     -33.533   8.721  68.739  1.00 25.00           C
ATOM    153  CA  CYS   153     -32.415  11.927  70.510  1.00 25.00           C
ATOM    154  CA  THR   154     -35.978  13.316  70.298  1.00 25.00           C
ATOM    155  CA  GLN   155     -37.362  10.055  71.755  1.00 25.00           C
ATOM    156  CA  LEU   156     -34.822  10.229  74.617  1.00 25.00           C
ATOM    157  CA  VAL   157     -35.100  13.838  75.716  1.00 25.00           C
ATOM    158  CA  ARG   158     -35.369  14.548  79.458  1.00 25.00           C
ATOM    159  CA  ALA   159     -32.600  17.132  79.516  1.00 25.00           C
ATOM    160  CA  SER   160     -30.243  19.662  81.143  1.00 25.00           C
ATOM    161  CA  LYS   161     -27.065  21.564  82.199  1.00 25.00           C
ATOM    162  CA  ASP   162     -24.251  18.979  81.940  1.00 25.00           C
ATOM    163  CA  LEU   163     -26.007  17.329  78.964  1.00 25.00           C
ATOM    164  CA  ALA   164     -26.378  20.739  77.261  1.00 25.00           C
ATOM    165  CA  GLN   165     -22.660  21.457  77.834  1.00 25.00           C
ATOM    166  CA  THR   166     -21.747  18.049  76.343  1.00 25.00           C
ATOM    167  CA  SER   167     -23.948  18.768  73.292  1.00 25.00           C
ATOM    168  CA  TYR   168     -22.263  22.178  72.847  1.00 25.00           C
ATOM    169  CA  PHE   169     -18.813  20.528  73.058  1.00 25.00           C
ATOM    170  CA  MET   170     -19.863  17.943  70.433  1.00 25.00           C
ATOM    171  CA  ALA   171     -21.114  20.743  68.140  1.00 25.00           C
ATOM    172  CA  THR   172     -17.797  22.608  68.565  1.00 25.00           C
ATOM    173  CA  ASN   173     -15.864  19.412  67.716  1.00 25.00           C
ATOM    174  CA  SER   174     -18.020  18.910  64.590  1.00 25.00           C
ATOM    175  CA  LEU   175     -17.370  22.532  63.530  1.00 25.00           C
ATOM    176  CA  HIS   176     -13.607  22.029  64.028  1.00 25.00           C
ATOM    177  CA  LEU   177     -11.500  19.560  66.081  1.00 25.00           C
ATOM    178  CA  THR   178     -12.841  16.034  65.519  1.00 25.00           C
ATOM    179  CA  THR   179     -10.452  15.536  62.549  1.00 25.00           C
ATOM    180  CA  PHE   180     -13.096  15.023  59.863  1.00 25.00           C
ATOM    181  CA  CYS   181     -15.295  18.104  60.301  1.00 25.00           C
ATOM    182  CA  LEU   182     -18.992  17.344  60.382  1.00 25.00           C
ATOM    183  CA  GLN   183     -17.915  13.800  61.051  1.00 25.00           C
ATOM    184  CA  TYR   184     -20.480  11.711  62.902  1.00 25.00           C
ATOM    185  CA  LYS   185     -22.383  14.935  63.355  1.00 25.00           C
ATOM    186  CA  PRO   186     -25.913  14.793  64.866  1.00 25.00           C
ATOM    187  CA  THR   187     -26.086  11.163  66.075  1.00 25.00           C
ATOM    188  CA  VAL   188     -22.591  11.482  67.609  1.00 25.00           C
ATOM    189  CA  ILE   189     -23.635  14.714  69.377  1.00 25.00           C
ATOM    190  CA  ALA   190     -26.770  12.987  70.738  1.00 25.00           C
ATOM    191  CA  CYS   191     -24.640  10.067  72.007  1.00 25.00           C
ATOM    192  CA  VAL   192     -22.247  12.523  73.714  1.00 25.00           C
ATOM    193  CA  CYS   193     -25.210  14.303  75.361  1.00 25.00           C
ATOM    194  CA  ILE   194     -26.576  10.943  76.592  1.00 25.00           C
ATOM    195  CA  HIS   195     -23.140  10.044  78.026  1.00 25.00           C
ATOM    196  CA  LEU   196     -22.970  13.430  79.807  1.00 25.00           C
ATOM    197  CA  ALA   197     -26.467  12.867  81.264  1.00 25.00           C
ATOM    198  CA  CYS   198     -25.426   9.390  82.485  1.00 25.00           C
ATOM    199  CA  LYS   199     -22.293  10.875  84.113  1.00 25.00           C
ATOM    200  CA  TRP   200     -24.425  13.549  85.836  1.00 25.00           C
ATOM    201  CA  SER   201     -26.820  10.850  87.119  1.00 25.00           C
ATOM    202  CA  ASN   202     -29.756  12.764  85.555  1.00 25.00           C
ATOM    203  CA  TRP   203     -30.562  10.039  83.025  1.00 25.00           C
ATOM    204  CA  GLU   204     -33.044   7.141  82.668  1.00 25.00           C
ATOM    205  CA  ILE   205     -31.562   6.208  79.284  1.00 25.00           C
ATOM    206  CA  PRO   206     -30.046   2.983  80.531  1.00 25.00           C
ATOM    207  CA  VAL   207     -31.991  -0.265  81.252  1.00 25.00           C
ATOM    208  CA  SER   208     -35.678   0.287  80.532  1.00 25.00           C
ATOM    209  CA  THR   209     -38.344  -0.081  77.839  1.00 25.00           C
ATOM    210  CA  ASP   210     -37.532  -2.607  75.043  1.00 25.00           C
ATOM    211  CA  GLY   211     -37.107  -2.472  71.259  1.00 25.00           C
ATOM    212  CA  LYS   212     -33.965  -3.013  69.217  1.00 25.00           C
ATOM    213  CA  HIS   213     -30.610  -4.601  68.445  1.00 25.00           C
ATOM    214  CA  TRP   214     -28.655  -1.353  68.375  1.00 25.00           C
ATOM    215  CA  TRP   215     -29.220   0.256  71.804  1.00 25.00           C
ATOM    216  CA  GLU   216     -27.770  -2.844  73.524  1.00 25.00           C
ATOM    217  CA  TYR   217     -24.712  -2.721  71.223  1.00 25.00           C
ATOM    218  CA  VAL   218     -22.107  -4.062  73.614  1.00 25.00           C
ATOM    219  CA  ASP   219     -19.429  -5.289  76.036  1.00 25.00           C
ATOM    220  CA  PRO   220     -15.896  -3.978  75.791  1.00 25.00           C
ATOM    221  CA  THR   221     -16.512  -3.254  72.057  1.00 25.00           C
ATOM    222  CA  VAL   222     -17.743  -4.952  68.901  1.00 25.00           C
ATOM    223  CA  THR   223     -20.333  -3.597  66.408  1.00 25.00           C
ATOM    224  CA  LEU   224     -20.298  -0.574  68.783  1.00 25.00           C
ATOM    225  CA  GLU   225     -16.668   0.010  67.712  1.00 25.00           C
ATOM    226  CA  LEU   226     -17.673   3.287  66.004  1.00 25.00           C
ATOM    227  CA  LEU   227     -19.513   4.403  69.172  1.00 25.00           C
ATOM    228  CA  ASP   228     -16.428   3.576  71.285  1.00 25.00           C
ATOM    229  CA  GLU   229     -14.217   5.585  68.887  1.00 25.00           C
ATOM    230  CA  LEU   230     -16.628   8.552  69.112  1.00 25.00           C
ATOM    231  CA  THR   231     -16.560   8.351  72.936  1.00 25.00           C
ATOM    232  CA  HIS   232     -12.730   8.292  72.889  1.00 25.00           C
ATOM    233  CA  GLU   233     -12.687  11.352  70.586  1.00 25.00           C
ATOM    234  CA  PHE   234     -15.089  13.186  72.938  1.00 25.00           C
ATOM    235  CA  LEU   235     -12.856  12.327  75.929  1.00 25.00           C
ATOM    236  CA  GLN   236      -9.788  13.630  74.042  1.00 25.00           C
ATOM    237  CA  ILE   237     -11.644  16.874  73.212  1.00 25.00           C
ATOM    238  CA  LEU   238     -12.626  17.283  76.891  1.00 25.00           C
ATOM    239  CA  GLU   239      -8.987  16.734  77.948  1.00 25.00           C
ATOM    240  CA  LYS   240      -7.827  19.353  75.407  1.00 25.00           C
ATOM    241  CA  THR   241      -7.059  23.007  74.868  1.00 25.00           C
ATOM    242  CA  PRO   242      -8.736  24.214  78.094  1.00 25.00           C
ATOM    243  CA  ASN   243      -7.074  27.661  77.947  1.00 25.00           C
ATOM    244  CA  ARG   244      -7.843  27.900  74.203  1.00 25.00           C
ATOM    245  CA  LEU   245     -11.495  26.958  74.868  1.00 25.00           C
ATOM    246  CA  LYS   246     -11.715  29.633  77.600  1.00 25.00           C
ATOM    247  CA  LYS   247     -10.243  32.234  75.204  1.00 25.00           C
ATOM    248  CA  ILE   248     -12.792  31.242  72.523  1.00 25.00           C
ATOM    249  CA  ARG   249     -15.635  31.573  75.068  1.00 25.00           C
ATOM    250  CA  ASN   250     -14.355  35.036  76.084  1.00 25.00           C
ATOM    251  CA  TRP   251     -14.214  36.090  72.404  1.00 25.00           C
ATOM    252  CA  ARG   252     -17.799  34.847  71.885  1.00 25.00           C
ATOM    253  CA  ALA   253     -18.952  36.813  74.963  1.00 25.00           C
ATOM    254  CA  ASN   254     -22.309  36.907  76.679  1.00 25.00           C
ATOM    255  CA  GLN   255     -23.443  33.296  76.550  1.00 25.00           C
ATOM    256  CA  ALA   256     -23.913  29.621  75.640  1.00 25.00           C
TER
END
