
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  136 (  136),  selected  136 , name T0339TS168_4-D1
# Molecule2: number of CA atoms  136 ( 1077),  selected  136 , name T0339_D1.pdb
# PARAMETERS: T0339TS168_4-D1.T0339_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   127       289 - 415         4.96     8.90
  LONGEST_CONTINUOUS_SEGMENT:   127       290 - 416         4.96     8.93
  LCS_AVERAGE:     88.54

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32       384 - 415         1.95     9.14
  LONGEST_CONTINUOUS_SEGMENT:    32       385 - 416         1.90     9.22
  LCS_AVERAGE:     12.32

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       393 - 415         0.84     9.15
  LCS_AVERAGE:      7.95

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  136
LCS_GDT     E       1     E       1      3    4    8     3    3    3    3    4    4    9   11   12   13   15   16   19   19   22   23   28   30   31   33 
LCS_GDT     R       2     R       2      3    4    8     3    3    3    3    4    4    9   11   12   13   15   16   19   19   22   23   28   30   31   33 
LCS_GDT     K       3     K       3      3    6    8     3    3    4    5    6    6    9   10   10   13   15   16   19   19   22   23   28   35   36   39 
LCS_GDT     V       4     V       4      4    6    8     3    3    4    5    6    7    9   11   12   13   15   16   19   19   22   26   34   35   36   39 
LCS_GDT     Y       5     Y       5      4    6    8     3    3    4    5    6    6    9   11   12   13   15   16   27   28   31   33   34   35   37   39 
LCS_GDT     M       6     M       6      4    6   10     3    3    4    5    6    6    9   10   10   10   11   20   27   28   31   34   41   43   43   51 
LCS_GDT     D       7     D       7      4    6   26     3    3    4    5    7    9   10   16   17   23   25   27   35   43   47   64   78   89  100  109 
LCS_GDT     Y       8     Y       8      3    6   44     3    3    6    6    7    7    9   12   12   23   25   27   33   39   42   64   70   73  101  109 
LCS_GDT     E     289     E     289     21   22  127    12   21   21   21   21   24   26   32   45   61   82   96  105  111  116  119  120  122  124  126 
LCS_GDT     A     290     A     290     21   22  127    12   21   21   21   21   24   26   26   36   49   63   79  100  104  111  117  120  122  123  126 
LCS_GDT     Y     291     Y     291     21   22  127    12   21   21   21   21   24   26   26   37   53   78   94  102  109  116  119  120  122  124  126 
LCS_GDT     E     292     E     292     21   22  127    12   21   21   21   21   25   31   58   73   86   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     293     A     293     21   22  127    13   21   21   21   21   25   30   41   56   84   94  102  109  113  116  119  121  123  124  126 
LCS_GDT     H     294     H     294     21   22  127    13   21   21   21   21   24   26   29   43   57   84   96  106  111  116  119  120  123  124  126 
LCS_GDT     M     295     M     295     21   22  127    13   21   21   21   21   24   27   41   64   85   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     296     R     296     21   22  127    13   21   21   21   26   39   55   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     D     297     D     297     21   22  127    13   21   21   21   22   33   42   59   76   88   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     298     V     298     21   22  127    13   21   21   21   21   24   27   44   64   85   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     299     R     299     21   22  127    13   21   21   21   24   38   52   65   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     D     300     D     300     21   22  127    13   21   21   21   33   39   55   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Y     301     Y     301     21   22  127    13   21   21   21   24   38   51   68   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     302     L     302     21   22  127    13   21   21   21   22   32   48   57   76   87   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     E     303     E     303     21   22  127    13   21   21   21   21   24   37   59   77   87   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     E     304     E     304     21   22  127    13   21   21   21   21   39   52   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     305     R     305     21   22  127    13   21   21   21   23   32   48   63   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     306     L     306     21   22  127    13   21   21   21   21   24   26   26   39   53   60   90  103  107  115  119  121  123  124  126 
LCS_GDT     E     307     E     307     21   22  127    12   21   21   21   21   24   26   26   28   59   72   85  100  112  116  119  121  123  124  126 
LCS_GDT     A     308     A     308     21   22  127    13   21   21   21   21   24   43   63   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     E     309     E     309     21   22  127    12   21   21   21   21   24   26   26   39   50   75   94  103  107  115  119  120  123  124  126 
LCS_GDT     F     310     F     310      4   22  127     3    4    4    5   14   23   51   62   77   86   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     G     311     G     311      4    6  127     3    5   11   21   33   44   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     312     Q     312      4    6  127     3    4   10   18   25   38   50   64   77   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     K     313     K     313      4    6  127     3    4    7    9   16   36   47   63   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     314     R     314      3    6  127     3    6   18   28   37   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     I     315     I     315      4    6  127     3   12   21   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     H     316     H     316      4    6  127     3   10   20   30   38   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     317     L     317      4    6  127     3    5   21   31   39   47   56   67   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     N     318     N     318      4    6  127     3    4   10   16   30   41   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     S     319     S     319      4    6  127     3    4   11   15   22   32   48   61   76   86   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     320     Q     320      4    6  127     3    4    7   18   34   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     F     321     F     321      4    7  127     3    4    6    8   14   30   46   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     P     322     P     322      4    7  127     3    4    6    8   12   22   33   52   69   84   94  105  110  113  116  119  121  123  124  126 
LCS_GDT     G     323     G     323      3    9  127     3    3    9   12   24   37   47   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     T     324     T     324      4    9  127     3    3    5   11   23   26   38   55   69   83   95  105  110  113  115  119  121  123  124  126 
LCS_GDT     Q     325     Q     325      4   11  127     3    4    9   12   25   37   51   68   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     326     R     326      4   11  127     3    4    9   16   26   39   55   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     327     L     327      4   11  127     3   20   28   32   36   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     P     328     P     328      4   11  127     3    7   12   26   39   47   51   63   72   85   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     N     329     N     329      4   11  127     3    7   17   26   39   47   51   64   72   85   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     T     330     T     330      4   11  127     3    7   21   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     C     331     C     331      5   11  127     3    7   20   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     N     332     N     332      5   11  127     3    5   21   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     F     333     F     333      5   11  127     3    7   11   24   32   42   50   56   68   87   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     S     334     S     334      5   11  127     3    7   13   24   32   45   50   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     I     335     I     335      5   11  127     3    7   13   24   35   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     336     R     336      5   10  127     3    7   19   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     G     337     G     337      5   10  127     3    6   18   29   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     P     338     P     338      3    7  127     3    3    6    8   12   31   48   61   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     339     R     339      3    4  127     3    3    7   23   34   42   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     340     L     340      3    4  127     4    6   11   21   34   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     341     Q     341      9   10  127     9    9   13   24   31   42   50   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     G     342     G     342      9   10  127     9    9    9    9   10   15   18   41   50   74   82   97  107  112  116  119  121  123  124  126 
LCS_GDT     H     343     H     343      9   10  127     9    9    9    9   12   15   24   45   64   76   91  100  109  112  116  119  121  123  124  126 
LCS_GDT     V     344     V     344      9   10  127     9    9    9   12   19   32   46   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     345     V     345      9   10  127     9    9    9   16   23   36   45   63   77   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     346     L     346      9   10  127     9    9   13   21   31   34   50   61   77   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     347     A     347      9   10  127     9    9    9   12   21   32   43   60   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     348     Q     348      9   10  127     9    9   10   12   22   28   48   61   77   88   96  104  110  113  115  118  121  123  124  126 
LCS_GDT     C     349     C     349      9   10  127     9    9    9    9   16   32   46   63   77   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     350     R     350      6   10  127     4   10   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     351     V     351      6    9  127     4    5   11   29   38   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     352     L     352      6    9  127     4    5   11   25   38   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     M     353     M     353      6    9  127     4   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     354     A     354      6    9  127     3    6   23   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     S     355     S     355      6    9  127    16   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     356     V     356      5    9  127     3    5   10   19   32   42   52   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     G     357     G     357      5    9  127     3    4    8   17   32   42   50   63   76   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     358     A     358      5    9  127     3    5   10   19   32   42   50   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     359     A     359      5    6  127     3    5   10   19   33   42   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     C     360     C     360      5    6  127     3    5   11   14   22   32   46   61   73   86   96  104  110  113  115  118  121  123  124  126 
LCS_GDT     H     361     H     361      4    6  127     3    4    7   14   20   28   37   42   52   70   80   89  100  108  112  117  121  123  124  126 
LCS_GDT     S     362     S     362      4    7  127     3    4    4    6    9   10   13   18   28   44   51   62   71   82   90  104  114  116  120  123 
LCS_GDT     D     363     D     363      4    7  127     3    4    4    5    9   10   32   38   47   57   78   89  103  109  114  118  121  123  124  126 
LCS_GDT     H     364     H     364      4    7  127     3    4    6    8   13   25   35   41   52   65   80   91  102  109  113  117  121  123  124  126 
LCS_GDT     G     365     G     365      4    7  127     3    4    6    9   14   25   35   41   52   63   80   89  102  108  113  117  121  123  124  126 
LCS_GDT     D     366     D     366      4    7  127     3    5    6   12   20   27   40   50   68   84   96  104  110  113  115  118  121  123  124  126 
LCS_GDT     Q     367     Q     367      4    7  127     3    5   10   16   27   38   50   64   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     P     368     P     368      4   11  127     3    3    4    9   21   34   46   63   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     S     369     S     369     10   14  127     7    9   11   13   22   43   56   69   78   88   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     P     370     P     370     10   14  127     7    9   11   22   34   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     371     V     371     10   14  127     7   21   28   32   36   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     372     L     372     10   14  127     7    9   13   30   36   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     373     L     373     10   14  127     7    9   19   32   36   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     S     374     S     374     10   14  127     7   20   28   32   35   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Y     375     Y     375     10   14  127     7    9   13   22   35   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     G     376     G     376     10   14  127     3    9   18   32   36   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     377     V     377     10   14  127     4    8   11   18   34   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     P     378     P     378     10   14  127     7    9   17   23   34   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     F     379     F     379      6   14  127     4    6   17   26   36   47   56   69   78   88   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     D     380     D     380      6   14  127     4    6   17   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     381     V     381      6   14  127     4    7   21   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     382     A     382      6   14  127     4    6   11   26   37   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     383     R     383      4    7  127     4    4   21   27   35   43   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     N     384     N     384      4   32  127     4    4    5    8   11   14   26   43   64   76   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     385     A     385      5   32  127     3    6   25   30   35   42   55   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     386     L     386      5   32  127     3    4   10   22   35   41   50   65   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     387     R     387      5   32  127     3    8   13   22   35   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     388     L     388      5   32  127     3   20   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     S     389     S     389      5   32  127     4   18   24   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     390     V     390      4   32  127     3    4   16   29   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     G     391     G     391      4   32  127     0    4   12   20   36   47   56   64   74   87   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     392     R     392      4   32  127     3    4   11   17   25   46   53   63   74   87   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     S     393     S     393     23   32  127     3    8   21   31   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     T     394     T     394     23   32  127     3   15   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     T     395     T     395     23   32  127     3   14   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     R     396     R     396     23   32  127    13   22   28   32   38   45   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     397     A     397     23   32  127    16   22   28   32   38   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     E     398     E     398     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     399     V     399     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     D     400     D     400     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     401     L     401     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     402     V     402     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     403     V     403     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     404     Q     404     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     D     405     D     405     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     406     L     406     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     K     407     K     407     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     408     Q     408     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     409     A     409     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     V     410     V     410     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     A     411     A     411     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     412     Q     412     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     L     413     L     413     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     E     414     E     414     23   32  127    17   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     D     415     D     415     23   32  127    15   22   28   32   39   47   56   69   78   90   96  105  110  113  116  119  121  123  124  126 
LCS_GDT     Q     416     Q     416      3   32  127     0    3    4   12   23   32   47   57   65   74   82   94  105  111  116  119  120  122  124  126 
LCS_AVERAGE  LCS_A:  36.27  (   7.95   12.32   88.54 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     22     28     32     39     47     56     69     78     90     96    105    110    113    116    119    121    123    124    126 
GDT PERCENT_CA  12.50  16.18  20.59  23.53  28.68  34.56  41.18  50.74  57.35  66.18  70.59  77.21  80.88  83.09  85.29  87.50  88.97  90.44  91.18  92.65
GDT RMS_LOCAL    0.28   0.47   0.84   1.10   1.60   1.86   2.46   2.77   3.05   3.44   3.56   3.83   3.99   4.12   4.31   4.45   4.57   4.67   4.73   4.84
GDT RMS_ALL_CA   9.28   9.22   9.09   9.06   9.50   9.40   8.90   8.86   8.88   9.00   8.99   8.93   8.90   8.89   8.93   8.95   8.95   8.95   8.96   8.93

#      Molecule1      Molecule2       DISTANCE
LGA    E       1      E       1         41.783
LGA    R       2      R       2         39.598
LGA    K       3      K       3         35.289
LGA    V       4      V       4         31.015
LGA    Y       5      Y       5         26.980
LGA    M       6      M       6         23.220
LGA    D       7      D       7         16.794
LGA    Y       8      Y       8         17.596
LGA    E     289      E     289          9.155
LGA    A     290      A     290         10.470
LGA    Y     291      Y     291          8.928
LGA    E     292      E     292          5.963
LGA    A     293      A     293          7.315
LGA    H     294      H     294          8.269
LGA    M     295      M     295          5.831
LGA    R     296      R     296          3.599
LGA    D     297      D     297          5.547
LGA    V     298      V     298          5.960
LGA    R     299      R     299          4.497
LGA    D     300      D     300          3.737
LGA    Y     301      Y     301          4.226
LGA    L     302      L     302          5.839
LGA    E     303      E     303          5.706
LGA    E     304      E     304          3.927
LGA    R     305      R     305          5.247
LGA    L     306      L     306          8.440
LGA    E     307      E     307          7.782
LGA    A     308      A     308          5.116
LGA    E     309      E     309          8.985
LGA    F     310      F     310          5.256
LGA    G     311      G     311          2.662
LGA    Q     312      Q     312          5.323
LGA    K     313      K     313          5.158
LGA    R     314      R     314          3.897
LGA    I     315      I     315          3.005
LGA    H     316      H     316          3.440
LGA    L     317      L     317          4.139
LGA    N     318      N     318          3.798
LGA    S     319      S     319          5.458
LGA    Q     320      Q     320          2.716
LGA    F     321      F     321          4.710
LGA    P     322      P     322          6.548
LGA    G     323      G     323          5.099
LGA    T     324      T     324          6.741
LGA    Q     325      Q     325          4.446
LGA    R     326      R     326          3.797
LGA    L     327      L     327          0.934
LGA    P     328      P     328          6.103
LGA    N     329      N     329          5.836
LGA    T     330      T     330          3.574
LGA    C     331      C     331          3.050
LGA    N     332      N     332          3.711
LGA    F     333      F     333          5.648
LGA    S     334      S     334          4.635
LGA    I     335      I     335          3.212
LGA    R     336      R     336          2.257
LGA    G     337      G     337          1.671
LGA    P     338      P     338          5.074
LGA    R     339      R     339          3.672
LGA    L     340      L     340          3.376
LGA    Q     341      Q     341          4.925
LGA    G     342      G     342          7.895
LGA    H     343      H     343          7.168
LGA    V     344      V     344          5.198
LGA    V     345      V     345          5.603
LGA    L     346      L     346          5.520
LGA    A     347      A     347          6.023
LGA    Q     348      Q     348          6.837
LGA    C     349      C     349          5.472
LGA    R     350      R     350          1.434
LGA    V     351      V     351          2.396
LGA    L     352      L     352          2.791
LGA    M     353      M     353          0.458
LGA    A     354      A     354          1.528
LGA    S     355      S     355          0.885
LGA    V     356      V     356          4.437
LGA    G     357      G     357          5.492
LGA    A     358      A     358          4.964
LGA    A     359      A     359          3.894
LGA    C     360      C     360          7.350
LGA    H     361      H     361         10.176
LGA    S     362      S     362         12.481
LGA    D     363      D     363          9.049
LGA    H     364      H     364          9.997
LGA    G     365      G     365         10.700
LGA    D     366      D     366          7.967
LGA    Q     367      Q     367          5.281
LGA    P     368      P     368          5.584
LGA    S     369      S     369          3.957
LGA    P     370      P     370          2.606
LGA    V     371      V     371          1.681
LGA    L     372      L     372          2.835
LGA    L     373      L     373          1.917
LGA    S     374      S     374          2.670
LGA    Y     375      Y     375          3.516
LGA    G     376      G     376          3.069
LGA    V     377      V     377          3.526
LGA    P     378      P     378          3.798
LGA    F     379      F     379          3.838
LGA    D     380      D     380          2.781
LGA    V     381      V     381          2.370
LGA    A     382      A     382          3.196
LGA    R     383      R     383          3.162
LGA    N     384      N     384          6.124
LGA    A     385      A     385          3.775
LGA    L     386      L     386          4.230
LGA    R     387      R     387          3.414
LGA    L     388      L     388          0.957
LGA    S     389      S     389          2.196
LGA    V     390      V     390          3.919
LGA    G     391      G     391          5.492
LGA    R     392      R     392          6.069
LGA    S     393      S     393          2.781
LGA    T     394      T     394          0.603
LGA    T     395      T     395          1.140
LGA    R     396      R     396          2.290
LGA    A     397      A     397          1.569
LGA    E     398      E     398          1.563
LGA    V     399      V     399          1.798
LGA    D     400      D     400          1.695
LGA    L     401      L     401          1.529
LGA    V     402      V     402          1.424
LGA    V     403      V     403          1.975
LGA    Q     404      Q     404          1.932
LGA    D     405      D     405          1.655
LGA    L     406      L     406          1.948
LGA    K     407      K     407          2.295
LGA    Q     408      Q     408          2.477
LGA    A     409      A     409          2.323
LGA    V     410      V     410          3.207
LGA    A     411      A     411          3.335
LGA    Q     412      Q     412          3.206
LGA    L     413      L     413          3.592
LGA    E     414      E     414          3.985
LGA    D     415      D     415          3.285
LGA    Q     416      Q     416          9.102

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  136  136    4.0     69    2.77    44.485    38.173     2.402

LGA_LOCAL      RMSD =  2.773  Number of atoms =   69  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  8.839  Number of atoms =  136 
Std_ALL_ATOMS  RMSD =  8.586  (standard rmsd on all 136 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.544626 * X  +  -0.747444 * Y  +   0.380409 * Z  + -12.639450
  Y_new =  -0.667231 * X  +   0.111349 * Y  +  -0.736481 * Z  + -13.855714
  Z_new =   0.508120 * X  +  -0.654927 * Y  +  -0.559361 * Z  +  14.221260 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.277655    0.863938  [ DEG:  -130.5000     49.5000 ]
  Theta =  -0.533000   -2.608592  [ DEG:   -30.5387   -149.4613 ]
  Phi   =  -2.255366    0.886226  [ DEG:  -129.2230     50.7770 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0339TS168_4-D1                               
REMARK     2: T0339_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0339TS168_4-D1.T0339_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  136  136   4.0   69   2.77  38.173     8.59
REMARK  ---------------------------------------------------------- 
MOLECULE T0339TS168_4-D1
PFRMAT TS
TARGET T0339
MODEL 4
PARENT N/A
ATOM      1  CA  GLU     1     -39.816 -21.206   7.621  1.00 25.00           C
ATOM      2  CA  ARG     2     -38.167 -20.518  10.940  1.00 25.00           C
ATOM      3  CA  LYS     3     -38.719 -22.157  14.372  1.00 25.00           C
ATOM      4  CA  VAL     4     -35.140 -23.529  14.392  1.00 25.00           C
ATOM      5  CA  TYR     5     -32.993 -22.946  11.333  1.00 25.00           C
ATOM      6  CA  MET     6     -29.668 -21.089  11.265  1.00 25.00           C
ATOM      7  CA  ASP     7     -25.902 -21.493  10.709  1.00 25.00           C
ATOM      8  CA  TYR     8     -25.696 -21.711  14.496  1.00 25.00           C
ATOM    289  CA  GLU   289      -0.809 -26.074  13.337  1.00 25.00           C
ATOM    290  CA  ALA   290      -2.402 -29.557  13.356  1.00 25.00           C
ATOM    291  CA  TYR   291      -5.449 -28.200  11.472  1.00 25.00           C
ATOM    292  CA  GLU   292      -3.149 -26.561   8.885  1.00 25.00           C
ATOM    293  CA  ALA   293      -1.254 -29.859   8.443  1.00 25.00           C
ATOM    294  CA  HIS   294      -4.563 -31.724   7.961  1.00 25.00           C
ATOM    295  CA  MET   295      -5.662 -29.151   5.347  1.00 25.00           C
ATOM    296  CA  ARG   296      -2.323 -29.551   3.514  1.00 25.00           C
ATOM    297  CA  ASP   297      -2.736 -33.359   3.541  1.00 25.00           C
ATOM    298  CA  VAL   298      -6.284 -33.008   2.141  1.00 25.00           C
ATOM    299  CA  ARG   299      -4.991 -30.695  -0.623  1.00 25.00           C
ATOM    300  CA  ASP   300      -2.245 -33.221  -1.487  1.00 25.00           C
ATOM    301  CA  TYR   301      -4.844 -36.029  -1.646  1.00 25.00           C
ATOM    302  CA  LEU   302      -7.039 -33.899  -3.951  1.00 25.00           C
ATOM    303  CA  GLU   303      -4.030 -33.203  -6.215  1.00 25.00           C
ATOM    304  CA  GLU   304      -3.232 -36.947  -6.347  1.00 25.00           C
ATOM    305  CA  ARG   305      -6.871 -37.715  -7.261  1.00 25.00           C
ATOM    306  CA  LEU   306      -6.757 -35.077 -10.035  1.00 25.00           C
ATOM    307  CA  GLU   307      -3.509 -36.596 -11.381  1.00 25.00           C
ATOM    308  CA  ALA   308      -5.103 -40.079 -11.363  1.00 25.00           C
ATOM    309  CA  GLU   309      -8.149 -38.722 -13.246  1.00 25.00           C
ATOM    310  CA  PHE   310     -10.794 -38.815 -10.483  1.00 25.00           C
ATOM    311  CA  GLY   311     -13.443 -40.391  -8.232  1.00 25.00           C
ATOM    312  CA  GLN   312     -15.955 -37.979  -9.821  1.00 25.00           C
ATOM    313  CA  LYS   313     -16.187 -36.246  -6.399  1.00 25.00           C
ATOM    314  CA  ARG   314     -17.335 -32.614  -6.432  1.00 25.00           C
ATOM    315  CA  ILE   315     -14.620 -30.849  -4.450  1.00 25.00           C
ATOM    316  CA  HIS   316     -14.715 -27.049  -4.027  1.00 25.00           C
ATOM    317  CA  LEU   317     -15.362 -25.453  -0.662  1.00 25.00           C
ATOM    318  CA  ASN   318     -14.442 -21.796  -1.131  1.00 25.00           C
ATOM    319  CA  SER   319     -14.396 -22.016  -4.934  1.00 25.00           C
ATOM    320  CA  GLN   320     -10.689 -21.379  -5.591  1.00 25.00           C
ATOM    321  CA  PHE   321      -9.336 -22.801  -2.362  1.00 25.00           C
ATOM    322  CA  PRO   322      -5.975 -23.295  -3.968  1.00 25.00           C
ATOM    323  CA  GLY   323      -3.949 -21.109  -6.276  1.00 25.00           C
ATOM    324  CA  THR   324      -1.961 -19.687  -3.391  1.00 25.00           C
ATOM    325  CA  GLN   325      -3.400 -20.708  -0.045  1.00 25.00           C
ATOM    326  CA  ARG   326      -5.301 -22.665   2.646  1.00 25.00           C
ATOM    327  CA  LEU   327      -5.503 -21.571   6.242  1.00 25.00           C
ATOM    328  CA  PRO   328      -8.508 -22.204   8.417  1.00 25.00           C
ATOM    329  CA  ASN   329      -9.930 -24.898  10.632  1.00 25.00           C
ATOM    330  CA  THR   330     -12.025 -25.867   7.601  1.00 25.00           C
ATOM    331  CA  CYS   331     -13.261 -27.075   4.209  1.00 25.00           C
ATOM    332  CA  ASN   332     -16.857 -26.529   5.193  1.00 25.00           C
ATOM    333  CA  PHE   333     -19.182 -29.306   4.239  1.00 25.00           C
ATOM    334  CA  SER   334     -20.612 -32.493   2.812  1.00 25.00           C
ATOM    335  CA  ILE   335     -20.464 -34.527  -0.417  1.00 25.00           C
ATOM    336  CA  ARG   336     -21.738 -34.293  -3.937  1.00 25.00           C
ATOM    337  CA  GLY   337     -24.667 -36.669  -4.487  1.00 25.00           C
ATOM    338  CA  PRO   338     -23.185 -38.857  -1.798  1.00 25.00           C
ATOM    339  CA  ARG   339     -25.385 -37.315   0.830  1.00 25.00           C
ATOM    340  CA  LEU   340     -22.529 -37.182   3.316  1.00 25.00           C
ATOM    341  CA  GLN   341     -24.523 -38.571   6.277  1.00 25.00           C
ATOM    342  CA  GLY   342     -22.990 -42.036   5.714  1.00 25.00           C
ATOM    343  CA  HIS   343     -19.484 -40.496   5.615  1.00 25.00           C
ATOM    344  CA  VAL   344     -20.190 -38.620   8.879  1.00 25.00           C
ATOM    345  CA  VAL   345     -21.406 -41.865  10.510  1.00 25.00           C
ATOM    346  CA  LEU   346     -18.233 -43.666   9.346  1.00 25.00           C
ATOM    347  CA  ALA   347     -16.075 -40.849  10.785  1.00 25.00           C
ATOM    348  CA  GLN   348     -17.952 -41.078  14.115  1.00 25.00           C
ATOM    349  CA  CYS   349     -17.414 -44.869  14.187  1.00 25.00           C
ATOM    350  CA  ARG   350     -14.237 -45.856  12.306  1.00 25.00           C
ATOM    351  CA  VAL   351     -12.003 -43.315  14.138  1.00 25.00           C
ATOM    352  CA  LEU   352     -11.861 -39.617  13.389  1.00 25.00           C
ATOM    353  CA  MET   353     -14.439 -36.858  13.332  1.00 25.00           C
ATOM    354  CA  ALA   354     -15.750 -33.329  12.733  1.00 25.00           C
ATOM    355  CA  SER   355     -18.002 -31.698  10.162  1.00 25.00           C
ATOM    356  CA  VAL   356     -19.770 -29.611  12.769  1.00 25.00           C
ATOM    357  CA  GLY   357     -19.776 -26.654  15.209  1.00 25.00           C
ATOM    358  CA  ALA   358     -17.817 -24.504  17.625  1.00 25.00           C
ATOM    359  CA  ALA   359     -20.298 -21.780  16.745  1.00 25.00           C
ATOM    360  CA  CYS   360     -19.176 -19.908  13.669  1.00 25.00           C
ATOM    361  CA  HIS   361     -16.496 -22.474  12.852  1.00 25.00           C
ATOM    362  CA  SER   362     -16.920 -25.801  11.125  1.00 25.00           C
ATOM    363  CA  ASP   363     -20.563 -25.207  10.371  1.00 25.00           C
ATOM    364  CA  HIS   364     -23.181 -23.235  12.369  1.00 25.00           C
ATOM    365  CA  GLY   365     -24.626 -26.421  13.946  1.00 25.00           C
ATOM    366  CA  ASP   366     -25.396 -27.776  10.504  1.00 25.00           C
ATOM    367  CA  GLN   367     -27.533 -24.968   9.219  1.00 25.00           C
ATOM    368  CA  PRO   368     -25.043 -22.590   7.632  1.00 25.00           C
ATOM    369  CA  SER   369     -27.776 -21.917   5.036  1.00 25.00           C
ATOM    370  CA  PRO   370     -26.249 -18.487   4.281  1.00 25.00           C
ATOM    371  CA  VAL   371     -22.796 -20.089   3.858  1.00 25.00           C
ATOM    372  CA  LEU   372     -24.273 -22.701   1.478  1.00 25.00           C
ATOM    373  CA  LEU   373     -25.963 -19.930  -0.554  1.00 25.00           C
ATOM    374  CA  SER   374     -22.650 -18.019  -0.749  1.00 25.00           C
ATOM    375  CA  TYR   375     -20.860 -21.192  -1.930  1.00 25.00           C
ATOM    376  CA  GLY   376     -22.085 -21.228  -5.505  1.00 25.00           C
ATOM    377  CA  VAL   377     -24.960 -23.651  -4.981  1.00 25.00           C
ATOM    378  CA  PRO   378     -28.526 -24.919  -5.513  1.00 25.00           C
ATOM    379  CA  PHE   379     -30.083 -28.258  -4.475  1.00 25.00           C
ATOM    380  CA  ASP   380     -28.716 -31.666  -3.387  1.00 25.00           C
ATOM    381  CA  VAL   381     -25.250 -30.128  -2.839  1.00 25.00           C
ATOM    382  CA  ALA   382     -26.801 -27.320  -0.747  1.00 25.00           C
ATOM    383  CA  ARG   383     -23.774 -28.037   1.532  1.00 25.00           C
ATOM    384  CA  ASN   384     -21.097 -27.108  -1.008  1.00 25.00           C
ATOM    385  CA  ALA   385     -18.273 -29.690  -0.798  1.00 25.00           C
ATOM    386  CA  LEU   386     -15.567 -31.466   1.199  1.00 25.00           C
ATOM    387  CA  ARG   387     -15.098 -32.231   4.888  1.00 25.00           C
ATOM    388  CA  LEU   388     -12.817 -31.107   7.756  1.00 25.00           C
ATOM    389  CA  SER   389     -10.621 -30.183  10.658  1.00 25.00           C
ATOM    390  CA  VAL   390      -8.248 -32.246  12.751  1.00 25.00           C
ATOM    391  CA  GLY   391      -8.426 -29.964  15.821  1.00 25.00           C
ATOM    392  CA  ARG   392      -5.271 -31.902  16.783  1.00 25.00           C
ATOM    393  CA  SER   393      -2.631 -34.360  15.610  1.00 25.00           C
ATOM    394  CA  THR   394      -2.602 -34.541  11.855  1.00 25.00           C
ATOM    395  CA  THR   395       0.334 -35.468   9.556  1.00 25.00           C
ATOM    396  CA  ARG   396       1.683 -38.206   7.243  1.00 25.00           C
ATOM    397  CA  ALA   397       0.717 -41.829   8.025  1.00 25.00           C
ATOM    398  CA  GLU   398      -2.405 -40.620   9.885  1.00 25.00           C
ATOM    399  CA  VAL   399      -3.355 -38.410   6.905  1.00 25.00           C
ATOM    400  CA  ASP   400      -2.903 -41.379   4.529  1.00 25.00           C
ATOM    401  CA  LEU   401      -5.110 -43.551   6.782  1.00 25.00           C
ATOM    402  CA  VAL   402      -7.796 -40.822   6.824  1.00 25.00           C
ATOM    403  CA  VAL   403      -7.657 -40.591   3.003  1.00 25.00           C
ATOM    404  CA  GLN   404      -8.020 -44.394   2.737  1.00 25.00           C
ATOM    405  CA  ASP   405     -11.034 -44.296   5.098  1.00 25.00           C
ATOM    406  CA  LEU   406     -12.624 -41.520   2.993  1.00 25.00           C
ATOM    407  CA  LYS   407     -12.058 -43.576  -0.189  1.00 25.00           C
ATOM    408  CA  GLN   408     -13.665 -46.632   1.469  1.00 25.00           C
ATOM    409  CA  ALA   409     -16.673 -44.508   2.523  1.00 25.00           C
ATOM    410  CA  VAL   410     -17.022 -43.183  -1.053  1.00 25.00           C
ATOM    411  CA  ALA   411     -16.893 -46.760  -2.417  1.00 25.00           C
ATOM    412  CA  GLN   412     -19.589 -47.836   0.080  1.00 25.00           C
ATOM    413  CA  LEU   413     -21.783 -44.879  -0.975  1.00 25.00           C
ATOM    414  CA  GLU   414     -21.325 -45.823  -4.658  1.00 25.00           C
ATOM    415  CA  ASP   415     -22.291 -49.445  -3.875  1.00 25.00           C
ATOM    416  CA  GLN   416     -20.300 -52.706  -3.613  1.00 25.00           C
TER
END
