
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  136 (  136),  selected  136 , name T0339TS393_1-D1
# Molecule2: number of CA atoms  136 ( 1077),  selected  136 , name T0339_D1.pdb
# PARAMETERS: T0339TS393_1-D1.T0339_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   132         5 - 416         5.00     5.59
  LCS_AVERAGE:     94.64

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37       379 - 415         1.99     6.15
  LCS_AVERAGE:     14.48

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       393 - 415         0.96     5.94
  LCS_AVERAGE:      8.12

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  136
LCS_GDT     E       1     E       1      3    7   20     3    3    5    6    7    8   14   25   27   29   37   41   50   59   69   84   89   93  106  118 
LCS_GDT     R       2     R       2      4    7   20     3    4    5    9   13   16   23   29   39   44   52   64   84   95  101  108  120  124  127  131 
LCS_GDT     K       3     K       3      4    7   20     3    4    6    9   13   20   24   34   39   57   67   84   95  103  112  118  122  125  130  131 
LCS_GDT     V       4     V       4      4    7   20     3    4    4    7    9   12   20   25   32   38   43   58   68   83   92  106  115  124  127  131 
LCS_GDT     Y       5     Y       5      4    7  132     3    4    6    9   13   23   30   37   52   69   83   96  105  113  118  120  124  129  130  131 
LCS_GDT     M       6     M       6      4    7  132     3    4    5   11   16   18   24   34   42   52   66   81   95  108  115  120  122  129  130  131 
LCS_GDT     D       7     D       7      4    7  132     3    4    5    7   13   21   29   47   68   81   94  102  109  114  118  121  124  129  130  131 
LCS_GDT     Y       8     Y       8      3    7  132     3    3    3    5   10   11   24   29   52   68   80   96  104  113  118  121  124  129  130  131 
LCS_GDT     E     289     E     289     21   22  132    12   21   21   21   23   24   32   54   71   80   91   99  106  112  118  121  124  129  130  131 
LCS_GDT     A     290     A     290     21   22  132    12   21   21   21   23   24   32   39   66   77   88   96  105  111  117  121  124  129  130  131 
LCS_GDT     Y     291     Y     291     21   22  132    12   21   21   21   23   24   32   39   66   77   91   96  105  112  118  121  124  129  130  131 
LCS_GDT     E     292     E     292     21   22  132    12   21   21   21   23   26   51   63   77   88  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     293     A     293     21   22  132    13   21   21   21   26   31   54   69   78   88  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     H     294     H     294     21   22  132    13   21   21   21   23   24   34   59   72   87   95  102  108  113  118  121  124  129  130  131 
LCS_GDT     M     295     M     295     21   22  132    13   21   21   21   23   24   45   63   77   88  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     296     R     296     21   22  132    13   21   21   21   40   54   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     D     297     D     297     21   22  132    13   21   21   21   33   52   62   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     298     V     298     21   22  132    13   21   21   21   29   43   56   71   80   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     299     R     299     21   22  132    13   21   21   21   32   45   59   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     D     300     D     300     21   22  132    13   21   21   21   34   51   61   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Y     301     Y     301     21   22  132    13   21   21   25   38   54   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     302     L     302     21   22  132    13   21   21   21   28   39   52   70   79   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     E     303     E     303     21   22  132    13   21   21   21   23   24   40   58   74   88   97  106  109  114  118  121  124  129  130  131 
LCS_GDT     E     304     E     304     21   22  132    13   21   21   21   23   30   51   70   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     305     R     305     21   22  132    13   21   21   21   29   46   60   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     306     L     306     21   22  132    13   21   21   21   23   24   27   39   46   51   81   98  105  113  117  121  124  129  130  131 
LCS_GDT     E     307     E     307     21   22  132    12   21   21   21   23   24   28   39   48   56   75   88   96  111  117  121  124  129  130  131 
LCS_GDT     A     308     A     308     21   22  132    13   21   21   21   23   26   38   56   74   86   97  106  109  114  118  121  124  129  130  131 
LCS_GDT     E     309     E     309     21   22  132    12   21   21   21   23   24   28   39   67   79   89   99  108  113  117  121  124  129  130  131 
LCS_GDT     F     310     F     310      4   22  132     4    4    9   17   24   42   56   70   77   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     G     311     G     311      4    5  132     4   10   20   31   46   56   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     312     Q     312      4    5  132     4    7   15   25   36   48   60   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     K     313     K     313      4    6  132     4    4    5    6   13   18   28   55   74   87   98  105  109  114  118  121  124  129  130  131 
LCS_GDT     R     314     R     314      4    6  132    17   23   25   33   43   56   63   69   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     I     315     I     315      4    6  132     4   23   25   34   43   56   63   69   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     H     316     H     316      4    6  132    17   23   25   32   43   49   62   68   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     317     L     317      4    6  132     4    4   24   34   47   57   63   69   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     N     318     N     318      3    6  132     3    3    3    5   20   45   63   68   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     S     319     S     319      4    5  132     3    3   10   18   25   37   52   63   76   89  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     320     Q     320      4    6  132     3    4   11   21   33   45   59   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     F     321     F     321      4   16  132     3    3    6   13   25   40   60   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     P     322     P     322      4   16  132     3    3   12   13   19   33   48   61   79   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     G     323     G     323      4   16  132     3    3    6   12   16   21   24   37   46   66   84   98  109  114  118  121  124  129  130  131 
LCS_GDT     T     324     T     324      7   16  132     3    5    8   18   26   35   53   68   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     325     Q     325      7   16  132     3    6   15   29   42   54   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     326     R     326      7   16  132     3    8   20   34   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     327     L     327      7   16  132     3    9   21   33   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     P     328     P     328      7   16  132     3    5   15   39   49   57   63   69   80   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     N     329     N     329      7   16  132     3    5    9   18   33   56   62   68   79   89  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     T     330     T     330      7   16  132     3    8   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     C     331     C     331      7   16  132     4    8   17   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     N     332     N     332      6   16  132     4    6   23   37   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     F     333     F     333      6   16  132     4    6   10   18   26   36   52   68   79   89  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     S     334     S     334      6   16  132     4    6   10   15   26   34   50   68   77   89  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     I     335     I     335      6   16  132     4    6    7   14   21   30   38   47   64   78   93  102  108  114  118  121  124  129  130  131 
LCS_GDT     R     336     R     336      5   16  132     3    5    9   20   35   47   61   70   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     G     337     G     337      3    6  132    17   22   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     P     338     P     338      3    5  132     3    3    4    4    6   12   24   48   65   75   90  101  109  114  118  121  124  129  130  131 
LCS_GDT     R     339     R     339      3    5  132     3    4   25   31   49   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     340     L     340      3    5  132     3   20   24   34   49   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     341     Q     341     10   10  132     9    9    9   20   32   48   59   70   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     G     342     G     342     10   10  132     9    9    9    9   15   17   25   33   52   73   88   97  108  113  118  121  124  129  130  131 
LCS_GDT     H     343     H     343     10   10  132     9    9    9    9   15   22   30   49   67   80   90   99  108  113  117  121  124  129  130  131 
LCS_GDT     V     344     V     344     10   10  132     9    9    9    9   22   36   51   68   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     345     V     345     10   10  132     9    9    9   12   27   44   55   70   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     346     L     346     10   10  132     9    9    9   20   28   33   47   69   78   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     347     A     347     10   10  132     9    9    9   16   21   29   39   62   74   88   97  105  109  114  118  121  124  129  130  131 
LCS_GDT     Q     348     Q     348     10   10  132     9    9    9   18   25   36   52   67   80   90   98  106  109  114  118  121  124  129  130  131 
LCS_GDT     C     349     C     349     10   10  132     9    9    9   12   27   46   56   70   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     350     R     350     10   10  132     3   11   24   38   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     351     V     351      6   10  132     4   10   20   33   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     352     L     352      6   10  132     3   10   20   34   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     M     353     M     353      6   10  132     4   10   20   37   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     354     A     354      6   10  132    11   21   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     S     355     S     355      6   10  132     3   11   25   38   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     356     V     356      4   10  132     3    3    9   14   24   36   47   63   80   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     G     357     G     357      4   10  132     3    3    7   14   23   35   45   61   76   87   98  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     358     A     358      4   10  132     3    4   10   14   24   39   48   68   81   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     359     A     359      4    6  132     3    3    4   21   34   45   55   68   82   90   98  106  109  114  118  121  124  129  130  131 
LCS_GDT     C     360     C     360      4    6  132     3    3    6   13   24   36   47   59   73   86   94  102  109  114  117  120  124  129  130  131 
LCS_GDT     H     361     H     361      3    6  132     3    3    5    7   18   22   31   43   58   67   85   94  104  111  116  120  123  129  130  131 
LCS_GDT     S     362     S     362      3    6  132     3    4    5    6    7    9   17   19   25   40   47   60   72   82   97  109  116  124  127  129 
LCS_GDT     D     363     D     363      3    6  132     3    4    5    5    6   20   22   26   33   45   61   84  102  111  115  120  123  129  130  131 
LCS_GDT     H     364     H     364      4    7  132     3    4    5    6    8   15   23   37   50   64   78   96  103  111  116  120  123  129  130  131 
LCS_GDT     G     365     G     365      4    7  132     3    3    5    5    9   11   18   25   39   60   78   86   94  106  111  117  122  125  129  131 
LCS_GDT     D     366     D     366      4    7  132     3    4    6   10   18   25   38   54   67   82   92  102  108  114  117  120  124  129  130  131 
LCS_GDT     Q     367     Q     367      4    7  132     3    5   13   22   34   45   57   69   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     P     368     P     368      3   15  132     3    5   14   27   35   48   61   70   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     S     369     S     369     10   15  132     7    9   12   21   46   57   63   71   81   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     P     370     P     370     10   15  132     7    9   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     371     V     371     10   15  132     7   20   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     372     L     372     10   15  132     7    9   16   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     373     L     373     10   15  132     7    9   26   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     S     374     S     374     10   15  132     9   20   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Y     375     Y     375     10   15  132     7   20   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     G     376     G     376     10   15  132     6   20   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     377     V     377     10   15  132     6    9   21   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     P     378     P     378     10   15  132     5    7   10   26   43   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     F     379     F     379      7   37  132     5    7   24   34   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     D     380     D     380      7   37  132     5    7   23   34   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     381     V     381      7   37  132     5    7   16   37   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     382     A     382      7   37  132     5   20   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     383     R     383      3   37  132     3    3    3   12   31   31   31   60   71   83   95  106  109  114  118  121  124  129  130  131 
LCS_GDT     N     384     N     384      3   37  132     4    4    7   27   43   54   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     385     A     385      4   37  132     4    5    9   23   41   52   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     386     L     386      4   37  132     4   14   26   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     387     R     387      4   37  132     3    6   10   28   46   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     388     L     388      4   37  132     3    6   23   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     S     389     S     389      4   37  132     1    6   23   39   49   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     390     V     390      5   37  132     4    8   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     G     391     G     391      5   37  132     4    5   17   39   47   57   63   71   81   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     392     R     392      5   37  132     4    5    8   36   46   54   63   69   79   88  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     S     393     S     393     23   37  132     4   16   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     T     394     T     394     23   37  132    11   20   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     T     395     T     395     23   37  132     3   10   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     R     396     R     396     23   37  132    13   23   27   38   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     397     A     397     23   37  132    17   23   27   38   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     E     398     E     398     23   37  132    17   23   27   38   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     399     V     399     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     D     400     D     400     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     401     L     401     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     402     V     402     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     403     V     403     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     404     Q     404     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     D     405     D     405     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     406     L     406     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     K     407     K     407     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     408     Q     408     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     409     A     409     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     V     410     V     410     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     A     411     A     411     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     412     Q     412     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     L     413     L     413     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     E     414     E     414     23   37  132    17   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     D     415     D     415     23   37  132    15   23   27   39   50   57   63   71   82   90  100  106  109  114  118  121  124  129  130  131 
LCS_GDT     Q     416     Q     416      3   33  132     3    4    6   16   34   42   52   64   66   71   81   93  102  111  117  121  123  126  130  131 
LCS_AVERAGE  LCS_A:  39.08  (   8.12   14.48   94.64 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     23     27     39     50     57     63     71     82     90    100    106    109    114    118    121    124    129    130    131 
GDT PERCENT_CA  12.50  16.91  19.85  28.68  36.76  41.91  46.32  52.21  60.29  66.18  73.53  77.94  80.15  83.82  86.76  88.97  91.18  94.85  95.59  96.32
GDT RMS_LOCAL    0.26   0.42   0.91   1.33   1.72   1.88   2.08   2.52   2.97   3.16   3.43   3.65   3.76   4.00   4.19   4.31   4.46   4.75   4.84   4.92
GDT RMS_ALL_CA   7.59   7.51   5.95   6.05   5.82   5.91   5.93   5.75   5.65   5.69   5.70   5.66   5.66   5.62   5.63   5.69   5.65   5.59   5.57   5.57

#      Molecule1      Molecule2       DISTANCE
LGA    E       1      E       1         22.601
LGA    R       2      R       2         16.404
LGA    K       3      K       3         13.463
LGA    V       4      V       4         14.823
LGA    Y       5      Y       5         10.185
LGA    M       6      M       6         11.001
LGA    D       7      D       7          8.442
LGA    Y       8      Y       8          9.675
LGA    E     289      E     289          7.365
LGA    A     290      A     290          8.039
LGA    Y     291      Y     291          7.553
LGA    E     292      E     292          5.150
LGA    A     293      A     293          4.965
LGA    H     294      H     294          6.052
LGA    M     295      M     295          4.970
LGA    R     296      R     296          2.177
LGA    D     297      D     297          3.101
LGA    V     298      V     298          3.927
LGA    R     299      R     299          3.835
LGA    D     300      D     300          2.979
LGA    Y     301      Y     301          2.055
LGA    L     302      L     302          4.249
LGA    E     303      E     303          5.569
LGA    E     304      E     304          4.414
LGA    R     305      R     305          3.544
LGA    L     306      L     306          7.324
LGA    E     307      E     307          8.268
LGA    A     308      A     308          5.679
LGA    E     309      E     309          7.062
LGA    F     310      F     310          5.050
LGA    G     311      G     311          2.362
LGA    Q     312      Q     312          3.918
LGA    K     313      K     313          7.030
LGA    R     314      R     314          4.839
LGA    I     315      I     315          4.812
LGA    H     316      H     316          5.292
LGA    L     317      L     317          4.868
LGA    N     318      N     318          4.494
LGA    S     319      S     319          4.986
LGA    Q     320      Q     320          3.763
LGA    F     321      F     321          3.787
LGA    P     322      P     322          4.831
LGA    G     323      G     323          6.872
LGA    T     324      T     324          4.423
LGA    Q     325      Q     325          1.956
LGA    R     326      R     326          1.330
LGA    L     327      L     327          3.457
LGA    P     328      P     328          5.009
LGA    N     329      N     329          5.764
LGA    T     330      T     330          2.458
LGA    C     331      C     331          2.731
LGA    N     332      N     332          3.388
LGA    F     333      F     333          5.522
LGA    S     334      S     334          5.853
LGA    I     335      I     335          7.392
LGA    R     336      R     336          4.520
LGA    G     337      G     337          2.386
LGA    P     338      P     338          7.724
LGA    R     339      R     339          3.545
LGA    L     340      L     340          3.034
LGA    Q     341      Q     341          4.937
LGA    G     342      G     342          7.735
LGA    H     343      H     343          7.452
LGA    V     344      V     344          5.910
LGA    V     345      V     345          5.629
LGA    L     346      L     346          5.343
LGA    A     347      A     347          7.037
LGA    Q     348      Q     348          7.774
LGA    C     349      C     349          5.378
LGA    R     350      R     350          2.728
LGA    V     351      V     351          3.080
LGA    L     352      L     352          3.290
LGA    M     353      M     353          2.824
LGA    A     354      A     354          1.032
LGA    S     355      S     355          2.006
LGA    V     356      V     356          6.438
LGA    G     357      G     357          6.736
LGA    A     358      A     358          6.018
LGA    A     359      A     359          6.538
LGA    C     360      C     360          8.449
LGA    H     361      H     361         10.008
LGA    S     362      S     362         12.367
LGA    D     363      D     363          9.145
LGA    H     364      H     364         10.026
LGA    G     365      G     365         12.212
LGA    D     366      D     366          9.222
LGA    Q     367      Q     367          5.460
LGA    P     368      P     368          4.284
LGA    S     369      S     369          3.626
LGA    P     370      P     370          2.136
LGA    V     371      V     371          1.879
LGA    L     372      L     372          2.684
LGA    L     373      L     373          2.324
LGA    S     374      S     374          0.953
LGA    Y     375      Y     375          1.105
LGA    G     376      G     376          0.494
LGA    V     377      V     377          1.979
LGA    P     378      P     378          3.690
LGA    F     379      F     379          2.836
LGA    D     380      D     380          2.639
LGA    V     381      V     381          2.588
LGA    A     382      A     382          1.167
LGA    R     383      R     383          5.861
LGA    N     384      N     384          3.832
LGA    A     385      A     385          3.432
LGA    L     386      L     386          1.453
LGA    R     387      R     387          2.201
LGA    L     388      L     388          3.156
LGA    S     389      S     389          3.898
LGA    V     390      V     390          2.833
LGA    G     391      G     391          3.742
LGA    R     392      R     392          5.398
LGA    S     393      S     393          3.190
LGA    T     394      T     394          1.788
LGA    T     395      T     395          2.358
LGA    R     396      R     396          2.466
LGA    A     397      A     397          1.614
LGA    E     398      E     398          1.864
LGA    V     399      V     399          2.348
LGA    D     400      D     400          2.178
LGA    L     401      L     401          1.747
LGA    V     402      V     402          1.732
LGA    V     403      V     403          2.246
LGA    Q     404      Q     404          2.152
LGA    D     405      D     405          1.632
LGA    L     406      L     406          1.849
LGA    K     407      K     407          2.355
LGA    Q     408      Q     408          2.480
LGA    A     409      A     409          1.838
LGA    V     410      V     410          2.494
LGA    A     411      A     411          3.007
LGA    Q     412      Q     412          2.866
LGA    L     413      L     413          2.625
LGA    E     414      E     414          3.121
LGA    D     415      D     415          2.946
LGA    Q     416      Q     416         10.109

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  136  136    4.0     71    2.52    46.691    40.860     2.711

LGA_LOCAL      RMSD =  2.519  Number of atoms =   71  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.884  Number of atoms =  136 
Std_ALL_ATOMS  RMSD =  5.533  (standard rmsd on all 136 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.716688 * X  +  -0.312223 * Y  +   0.623599 * Z  + -11.945331
  Y_new =  -0.637415 * X  +  -0.069526 * Y  +  -0.767377 * Z  + -10.767818
  Z_new =   0.282949 * X  +  -0.947461 * Y  +  -0.149187 * Z  +  12.600499 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.726974    1.414619  [ DEG:   -98.9483     81.0517 ]
  Theta =  -0.286868   -2.854725  [ DEG:   -16.4363   -163.5637 ]
  Phi   =  -2.414670    0.726923  [ DEG:  -138.3504     41.6496 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0339TS393_1-D1                               
REMARK     2: T0339_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0339TS393_1-D1.T0339_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  136  136   4.0   71   2.52  40.860     5.53
REMARK  ---------------------------------------------------------- 
MOLECULE T0339TS393_1-D1
PFRMAT TS
TARGET T0339
MODEL 1
PARENT N/A
ATOM      1  CA  GLU     1     -10.673 -33.008  30.695  1.00 25.00           C
ATOM      2  CA  ARG     2      -8.663 -34.179  27.684  1.00 25.00           C
ATOM      3  CA  LYS     3     -10.544 -32.530  24.745  1.00 25.00           C
ATOM      4  CA  VAL     4     -10.643 -28.802  23.818  1.00 25.00           C
ATOM      5  CA  TYR     5     -11.519 -27.563  20.298  1.00 25.00           C
ATOM      6  CA  MET     6     -14.093 -25.573  18.367  1.00 25.00           C
ATOM      7  CA  ASP     7     -11.936 -22.833  16.833  1.00 25.00           C
ATOM      8  CA  TYR     8     -12.525 -20.746  19.987  1.00 25.00           C
ATOM    289  CA  GLU   289      -0.862 -22.304  12.371  1.00 25.00           C
ATOM    290  CA  ALA   290      -1.138 -26.053  13.107  1.00 25.00           C
ATOM    291  CA  TYR   291      -4.623 -26.132  11.521  1.00 25.00           C
ATOM    292  CA  GLU   292      -3.281 -24.326   8.421  1.00 25.00           C
ATOM    293  CA  ALA   293      -0.406 -26.845   8.169  1.00 25.00           C
ATOM    294  CA  HIS   294      -2.892 -29.745   8.442  1.00 25.00           C
ATOM    295  CA  MET   295      -5.047 -28.190   5.685  1.00 25.00           C
ATOM    296  CA  ARG   296      -1.958 -27.799   3.455  1.00 25.00           C
ATOM    297  CA  ASP   297      -1.020 -31.461   4.072  1.00 25.00           C
ATOM    298  CA  VAL   298      -4.579 -32.550   3.172  1.00 25.00           C
ATOM    299  CA  ARG   299      -4.425 -30.480  -0.046  1.00 25.00           C
ATOM    300  CA  ASP   300      -1.064 -32.080  -0.944  1.00 25.00           C
ATOM    301  CA  TYR   301      -2.529 -35.564  -0.328  1.00 25.00           C
ATOM    302  CA  LEU   302      -5.527 -34.725  -2.559  1.00 25.00           C
ATOM    303  CA  GLU   303      -3.165 -33.502  -5.315  1.00 25.00           C
ATOM    304  CA  GLU   304      -1.132 -36.737  -5.041  1.00 25.00           C
ATOM    305  CA  ARG   305      -4.345 -38.806  -5.295  1.00 25.00           C
ATOM    306  CA  LEU   306      -5.406 -36.822  -8.395  1.00 25.00           C
ATOM    307  CA  GLU   307      -1.969 -37.412  -9.979  1.00 25.00           C
ATOM    308  CA  ALA   308      -2.246 -41.161  -9.243  1.00 25.00           C
ATOM    309  CA  GLU   309      -5.731 -41.240 -10.829  1.00 25.00           C
ATOM    310  CA  PHE   310      -8.407 -40.893  -8.128  1.00 25.00           C
ATOM    311  CA  GLY   311     -11.956 -39.828  -7.169  1.00 25.00           C
ATOM    312  CA  GLN   312     -14.354 -36.982  -8.012  1.00 25.00           C
ATOM    313  CA  LYS   313     -13.987 -35.658  -4.439  1.00 25.00           C
ATOM    314  CA  ARG   314     -15.791 -32.341  -5.149  1.00 25.00           C
ATOM    315  CA  ILE   315     -14.362 -30.115  -2.406  1.00 25.00           C
ATOM    316  CA  HIS   316     -16.183 -27.283  -0.652  1.00 25.00           C
ATOM    317  CA  LEU   317     -13.585 -24.579   0.101  1.00 25.00           C
ATOM    318  CA  ASN   318     -14.036 -21.173  -1.472  1.00 25.00           C
ATOM    319  CA  SER   319     -14.980 -23.413  -4.393  1.00 25.00           C
ATOM    320  CA  GLN   320     -12.153 -22.998  -6.910  1.00 25.00           C
ATOM    321  CA  PHE   321     -10.050 -22.857  -3.727  1.00 25.00           C
ATOM    322  CA  PRO   322      -6.906 -22.809  -5.821  1.00 25.00           C
ATOM    323  CA  GLY   323      -3.812 -22.363  -3.736  1.00 25.00           C
ATOM    324  CA  THR   324      -4.212 -18.633  -4.099  1.00 25.00           C
ATOM    325  CA  GLN   325      -5.990 -18.522  -0.763  1.00 25.00           C
ATOM    326  CA  ARG   326      -8.091 -20.007   2.009  1.00 25.00           C
ATOM    327  CA  LEU   327      -7.749 -17.951   5.225  1.00 25.00           C
ATOM    328  CA  PRO   328      -6.681 -20.560   7.719  1.00 25.00           C
ATOM    329  CA  ASN   329      -9.549 -22.682   8.919  1.00 25.00           C
ATOM    330  CA  THR   330     -11.004 -24.916   6.260  1.00 25.00           C
ATOM    331  CA  CYS   331     -13.024 -27.329   4.114  1.00 25.00           C
ATOM    332  CA  ASN   332     -16.695 -26.867   5.009  1.00 25.00           C
ATOM    333  CA  PHE   333     -19.629 -28.492   3.289  1.00 25.00           C
ATOM    334  CA  SER   334     -22.683 -30.491   2.454  1.00 25.00           C
ATOM    335  CA  ILE   335     -24.540 -33.481   1.090  1.00 25.00           C
ATOM    336  CA  ARG   336     -24.320 -34.270  -2.640  1.00 25.00           C
ATOM    337  CA  GLY   337     -22.288 -36.627  -4.733  1.00 25.00           C
ATOM    338  CA  PRO   338     -20.378 -37.681  -1.608  1.00 25.00           C
ATOM    339  CA  ARG   339     -23.756 -38.738  -0.312  1.00 25.00           C
ATOM    340  CA  LEU   340     -22.554 -37.628   3.073  1.00 25.00           C
ATOM    341  CA  GLN   341     -23.993 -37.989   6.603  1.00 25.00           C
ATOM    342  CA  GLY   342     -23.065 -41.705   6.627  1.00 25.00           C
ATOM    343  CA  HIS   343     -19.506 -40.849   5.498  1.00 25.00           C
ATOM    344  CA  VAL   344     -19.230 -38.226   8.276  1.00 25.00           C
ATOM    345  CA  VAL   345     -20.442 -40.789  10.850  1.00 25.00           C
ATOM    346  CA  LEU   346     -17.857 -43.316   9.588  1.00 25.00           C
ATOM    347  CA  ALA   347     -15.101 -40.671   9.861  1.00 25.00           C
ATOM    348  CA  GLN   348     -16.202 -39.857  13.438  1.00 25.00           C
ATOM    349  CA  CYS   349     -16.135 -43.581  14.332  1.00 25.00           C
ATOM    350  CA  ARG   350     -12.834 -44.663  12.819  1.00 25.00           C
ATOM    351  CA  VAL   351     -11.393 -41.484  14.375  1.00 25.00           C
ATOM    352  CA  LEU   352     -11.320 -37.798  13.274  1.00 25.00           C
ATOM    353  CA  MET   353     -12.938 -34.755  14.816  1.00 25.00           C
ATOM    354  CA  ALA   354     -14.249 -33.019  11.732  1.00 25.00           C
ATOM    355  CA  SER   355     -16.865 -30.311  12.324  1.00 25.00           C
ATOM    356  CA  VAL   356     -19.051 -28.010  14.392  1.00 25.00           C
ATOM    357  CA  GLY   357     -19.391 -24.723  16.224  1.00 25.00           C
ATOM    358  CA  ALA   358     -16.374 -22.963  17.805  1.00 25.00           C
ATOM    359  CA  ALA   359     -18.520 -19.853  17.965  1.00 25.00           C
ATOM    360  CA  CYS   360     -19.831 -17.795  15.067  1.00 25.00           C
ATOM    361  CA  HIS   361     -18.606 -20.647  12.925  1.00 25.00           C
ATOM    362  CA  SER   362     -17.630 -24.059  11.572  1.00 25.00           C
ATOM    363  CA  ASP   363     -20.418 -25.951   9.875  1.00 25.00           C
ATOM    364  CA  HIS   364     -22.770 -23.346  11.245  1.00 25.00           C
ATOM    365  CA  GLY   365     -24.819 -24.386  14.320  1.00 25.00           C
ATOM    366  CA  ASP   366     -25.374 -27.577  12.262  1.00 25.00           C
ATOM    367  CA  GLN   367     -27.708 -25.576  10.063  1.00 25.00           C
ATOM    368  CA  PRO   368     -25.414 -24.174   7.440  1.00 25.00           C
ATOM    369  CA  SER   369     -28.033 -23.751   4.677  1.00 25.00           C
ATOM    370  CA  PRO   370     -28.013 -19.958   5.206  1.00 25.00           C
ATOM    371  CA  VAL   371     -24.190 -19.924   4.997  1.00 25.00           C
ATOM    372  CA  LEU   372     -24.324 -21.954   1.751  1.00 25.00           C
ATOM    373  CA  LEU   373     -26.889 -19.508   0.300  1.00 25.00           C
ATOM    374  CA  SER   374     -24.650 -16.552   1.260  1.00 25.00           C
ATOM    375  CA  TYR   375     -21.651 -18.250  -0.410  1.00 25.00           C
ATOM    376  CA  GLY   376     -22.634 -19.074  -3.978  1.00 25.00           C
ATOM    377  CA  VAL   377     -23.784 -22.668  -4.173  1.00 25.00           C
ATOM    378  CA  PRO   378     -27.499 -22.862  -3.416  1.00 25.00           C
ATOM    379  CA  PHE   379     -28.472 -25.041  -0.431  1.00 25.00           C
ATOM    380  CA  ASP   380     -28.433 -28.569  -1.919  1.00 25.00           C
ATOM    381  CA  VAL   381     -25.204 -27.761  -3.814  1.00 25.00           C
ATOM    382  CA  ALA   382     -23.616 -26.433  -0.591  1.00 25.00           C
ATOM    383  CA  ARG   383     -20.919 -28.982  -1.533  1.00 25.00           C
ATOM    384  CA  ASN   384     -19.502 -32.505  -0.863  1.00 25.00           C
ATOM    385  CA  ALA   385     -19.598 -33.651   2.765  1.00 25.00           C
ATOM    386  CA  LEU   386     -17.979 -32.367   5.993  1.00 25.00           C
ATOM    387  CA  ARG   387     -14.417 -31.314   6.808  1.00 25.00           C
ATOM    388  CA  LEU   388     -13.107 -28.692   9.222  1.00 25.00           C
ATOM    389  CA  SER   389     -11.389 -27.187  12.300  1.00 25.00           C
ATOM    390  CA  VAL   390      -8.472 -29.201  11.065  1.00 25.00           C
ATOM    391  CA  GLY   391      -7.112 -29.269  14.588  1.00 25.00           C
ATOM    392  CA  ARG   392      -4.587 -28.520  17.367  1.00 25.00           C
ATOM    393  CA  SER   393      -2.110 -31.183  16.181  1.00 25.00           C
ATOM    394  CA  THR   394      -1.649 -33.007  12.888  1.00 25.00           C
ATOM    395  CA  THR   395      -0.352 -34.290   9.601  1.00 25.00           C
ATOM    396  CA  ARG   396       1.382 -37.202   7.792  1.00 25.00           C
ATOM    397  CA  ALA   397       0.770 -40.969   8.095  1.00 25.00           C
ATOM    398  CA  GLU   398      -2.278 -40.319  10.321  1.00 25.00           C
ATOM    399  CA  VAL   399      -3.635 -37.805   7.772  1.00 25.00           C
ATOM    400  CA  ASP   400      -3.145 -40.356   4.957  1.00 25.00           C
ATOM    401  CA  LEU   401      -4.986 -43.012   7.012  1.00 25.00           C
ATOM    402  CA  VAL   402      -7.865 -40.566   7.640  1.00 25.00           C
ATOM    403  CA  VAL   403      -8.053 -39.787   3.894  1.00 25.00           C
ATOM    404  CA  GLN   404      -8.137 -43.531   3.094  1.00 25.00           C
ATOM    405  CA  ASP   405     -10.949 -44.038   5.644  1.00 25.00           C
ATOM    406  CA  LEU   406     -12.917 -41.146   4.085  1.00 25.00           C
ATOM    407  CA  LYS   407     -12.449 -42.671   0.604  1.00 25.00           C
ATOM    408  CA  GLN   408     -13.672 -46.061   1.898  1.00 25.00           C
ATOM    409  CA  ALA   409     -16.743 -44.386   3.457  1.00 25.00           C
ATOM    410  CA  VAL   410     -17.482 -42.605   0.148  1.00 25.00           C
ATOM    411  CA  ALA   411     -17.183 -45.926  -1.735  1.00 25.00           C
ATOM    412  CA  GLN   412     -19.576 -47.582   0.755  1.00 25.00           C
ATOM    413  CA  LEU   413     -22.073 -44.713   0.300  1.00 25.00           C
ATOM    414  CA  GLU   414     -21.840 -45.082  -3.504  1.00 25.00           C
ATOM    415  CA  ASP   415     -22.453 -48.850  -3.201  1.00 25.00           C
ATOM    416  CA  GLN   416     -20.410 -49.041  -6.392  1.00 25.00           C
TER
END
