
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  136 (  136),  selected  136 , name T0339TS393_2-D1
# Molecule2: number of CA atoms  136 ( 1077),  selected  136 , name T0339_D1.pdb
# PARAMETERS: T0339TS393_2-D1.T0339_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   121       295 - 415         4.97     6.95
  LCS_AVERAGE:     81.76

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25       391 - 415         1.99     9.37
  LCS_AVERAGE:     11.19

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21       289 - 309         0.57    14.05
  LONGEST_CONTINUOUS_SEGMENT:    21       395 - 415         0.50     7.50
  LCS_AVERAGE:      7.74

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  136
LCS_GDT     E       1     E       1      6    6    8     3    4    6    6    7    9   11   13   13   14   25   28   33   40   49   53   58   65   70   73 
LCS_GDT     R       2     R       2      6    6   14     3    4    6    6    7    9   11   13   19   22   25   31   39   43   51   55   60   66   70   88 
LCS_GDT     K       3     K       3      6    6   14     3    4    6    6    7    9   11   13   13   14   22   30   39   43   51   55   66   70   72   96 
LCS_GDT     V       4     V       4      6    6   14     3    4    6    6    7    9   11   13   19   22   28   32   37   49   55   61   66   70   90   96 
LCS_GDT     Y       5     Y       5      6    6   14     3    4    6    6    7    9   11   13   13   22   28   38   44   49   65   70   95  101  114  118 
LCS_GDT     M       6     M       6      6    6   14     3    4    6    6    7    7   11   13   13   14   15   28   35   40   46   61   66   73   97  107 
LCS_GDT     D       7     D       7      3    6   14     3    3    4    4    6    9   11   20   26   34   45   56   68   85   95  110  117  119  123  126 
LCS_GDT     Y       8     Y       8      3    6   30     3    3    4    5    6    9   11   19   39   44   54   61   76   81   94  101  108  118  123  125 
LCS_GDT     E     289     E     289     21   23   40    12   21   22   23   23   23   26   29   34   48   60   79   86   93  104  109  111  116  121  125 
LCS_GDT     A     290     A     290     21   23   40    12   21   22   23   23   23   26   34   48   65   76   85   95  104  107  113  116  120  123  126 
LCS_GDT     Y     291     Y     291     21   23   40    12   21   22   23   23   23   26   33   52   66   76   83   95  104  107  113  116  120  123  126 
LCS_GDT     E     292     E     292     21   23   40    12   21   22   23   23   23   26   32   45   63   76   83   95  104  107  113  116  120  123  126 
LCS_GDT     A     293     A     293     21   23   40    13   21   22   23   23   23   29   41   57   69   81   90   98  104  109  114  118  120  123  126 
LCS_GDT     H     294     H     294     21   23   40    13   21   22   23   23   23   31   50   64   72   83   90   99  105  111  114  118  120  123  126 
LCS_GDT     M     295     M     295     21   23  121    13   21   22   23   23   23   27   42   61   69   79   90   99  105  111  114  118  120  123  126 
LCS_GDT     R     296     R     296     21   23  121    13   21   22   23   23   25   32   51   65   81   88   96  102  107  111  114  118  120  123  126 
LCS_GDT     D     297     D     297     21   23  121    13   21   22   23   23   36   54   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     298     V     298     21   23  121    13   21   22   23   23   25   48   63   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     299     R     299     21   23  121    13   21   22   23   23   30   46   59   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     D     300     D     300     21   23  121    13   21   22   23   33   47   56   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Y     301     Y     301     21   23  121    13   21   22   23   35   47   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     302     L     302     21   23  121    13   21   22   23   33   40   53   62   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     E     303     E     303     21   23  121    13   21   22   23   33   40   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     E     304     E     304     21   23  121    13   21   22   24   33   47   55   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     305     R     305     21   23  121    13   21   22   23   24   40   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     306     L     306     21   23  121    13   21   22   23   23   23   26   42   63   74   86   95  101  107  111  114  118  120  123  126 
LCS_GDT     E     307     E     307     21   23  121    12   21   22   23   23   27   32   44   60   73   84   95  101  107  111  114  118  120  123  126 
LCS_GDT     A     308     A     308     21   23  121    13   21   22   23   23   23   31   46   63   78   88   96  102  107  111  114  118  120  123  126 
LCS_GDT     E     309     E     309     21   23  121    12   21   22   23   23   23   24   32   54   67   84   93  101  107  111  114  118  120  123  126 
LCS_GDT     F     310     F     310      4   23  121     3    4    4   19   23   29   34   41   54   73   84   94  102  107  111  114  118  120  123  126 
LCS_GDT     G     311     G     311      4   23  121     3    4   12   23   32   43   55   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Q     312     Q     312      4    5  121     3    4   13   19   26   39   51   62   73   82   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     K     313     K     313      3    6  121     3    3    4    6   15   20   32   43   62   74   84   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     314     R     314      4    6  121     4    7   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     I     315     I     315      4    6  121    15   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     H     316     H     316      4    6  121     4   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     317     L     317      4    6  121     4    5    7   13   41   50   57   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     N     318     N     318      3    6  121     3    3    6   17   29   43   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     S     319     S     319      3    6  121     4   14   22   23   28   40   47   56   69   78   90   95  102  107  111  114  118  120  123  126 
LCS_GDT     Q     320     Q     320      4    6  121     3    4   11   24   33   40   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     F     321     F     321      4    6  121     3    3   12   28   33   47   55   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     P     322     P     322      4    6  121     3    3    6   11   17   20   34   57   66   78   87   96  102  107  111  114  118  120  123  126 
LCS_GDT     G     323     G     323      4    6  121     3    3    4    5    6    9   14   20   22   27   34   62   77   95  102  109  115  119  123  126 
LCS_GDT     T     324     T     324      3    6  121     3    3    4    5    6    7    9   12   14   19   23   30   38   76   90  101  107  112  119  126 
LCS_GDT     Q     325     Q     325      4    6  121     3    3    4    7    8   10   13   19   23   26   34   72   82   92  107  109  113  117  120  126 
LCS_GDT     R     326     R     326      4   12  121     3   10   11   12   41   49   55   63   73   81   88   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     327     L     327      4   12  121     4    7   28   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     P     328     P     328      4   12  121     3    9   20   28   33   42   52   62   70   75   82   89   98  104  110  114  118  120  123  126 
LCS_GDT     N     329     N     329      4   12  121     3    4   14   23   31   42   49   59   70   74   80   88   97  104  110  114  118  120  123  126 
LCS_GDT     T     330     T     330      4   12  121    10   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     C     331     C     331      4   12  121     3    4    6   23   32   42   54   63   70   79   88   96  102  107  111  114  118  120  123  126 
LCS_GDT     N     332     N     332      6   12  121     3   27   31   35   42   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     F     333     F     333      6   12  121     3   11   31   35   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     S     334     S     334      6   12  121     3   21   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     I     335     I     335      6   12  121    16   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     336     R     336      6   12  121    16   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     G     337     G     337      6   12  121    16   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     P     338     P     338      3    9  121     3    3    5    7   16   26   35   60   70   82   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     339     R     339      3    5  121     3    5   11   27   36   48   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     340     L     340      3    5  121     3    5   14   23   34   47   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Q     341     Q     341     10   10  121     9    9   18   24   35   47   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     G     342     G     342     10   10  121     9    9   10   10   29   39   46   63   73   81   88   96  102  107  111  114  118  120  123  126 
LCS_GDT     H     343     H     343     10   10  121     9    9   10   14   19   32   45   60   69   81   88   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     344     V     344     10   10  121     9    9   10   14   22   37   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     345     V     345     10   10  121     9    9   11   20   31   43   52   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     346     L     346     10   10  121     9    9   31   34   42   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     347     A     347     10   10  121     9    9   10   15   18   34   44   64   72   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Q     348     Q     348     10   10  121     9    9   10   15   29   39   51   63   72   82   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     C     349     C     349     10   10  121     9    9   10   16   29   43   54   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     350     R     350     10   10  121     3   10   19   28   44   49   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     351     V     351      5   10  121     3    9   18   27   44   49   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     352     L     352      5   10  121     3    5   18   27   37   49   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     M     353     M     353      5   10  121     4   14   26   34   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     354     A     354      5   10  121     4   12   25   34   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     S     355     S     355      4   10  121     3    6   18   27   36   48   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     356     V     356      4   10  121     3    5   11   24   34   46   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     G     357     G     357      4   10  121     3    5    7   12   34   43   54   63   72   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     358     A     358      4   10  121     3    4    9   23   34   46   54   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     359     A     359      4    6  121     3    5   11   21   33   42   55   64   72   82   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     C     360     C     360      3    6  121     3    3    5   17   29   41   51   63   71   81   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     H     361     H     361      3    6  121     3    4   13   19   24   35   47   57   69   74   82   92  101  107  111  114  118  120  123  126 
LCS_GDT     S     362     S     362      3    6  121     3    3    4    5    9   10   12   22   31   59   72   84   94   98  110  112  116  118  123  126 
LCS_GDT     D     363     D     363      3    6  121     6    7    9   19   24   40   53   61   72   81   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     H     364     H     364      4    6  121     3    3    5   15   23   35   48   60   69   74   82   92  101  107  111  114  118  120  123  126 
LCS_GDT     G     365     G     365      4    6  121     1    3    8   12   22   27   39   53   64   73   79   86   97  106  111  114  118  119  123  126 
LCS_GDT     D     366     D     366      4    6  121     1    3    4    6   12   26   38   60   69   78   86   95  102  107  111  114  118  120  123  126 
LCS_GDT     Q     367     Q     367      4    6  121     2   10   18   24   36   48   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     P     368     P     368      3   16  121     3   12   21   29   39   48   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     S     369     S     369     11   17  121     8   10   13   29   40   50   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     P     370     P     370     11   17  121     8   10   26   35   42   50   55   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     371     V     371     11   17  121     8   10   26   36   42   50   55   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     372     L     372     11   17  121     8   10   26   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     373     L     373     11   17  121     8   10   27   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     S     374     S     374     11   17  121     8   18   27   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Y     375     Y     375     11   17  121     8   20   28   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     G     376     G     376     11   17  121     8   10   27   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     377     V     377     11   17  121     4   10   13   34   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     P     378     P     378     11   17  121     5   10   17   33   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     F     379     F     379     11   17  121     7   23   26   29   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     D     380     D     380      6   17  121    18   21   28   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     381     V     381      6   17  121     7   23   26   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     382     A     382      6   17  121     6   23   26   29   39   49   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     383     R     383      6   17  121     6    8   23   33   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     N     384     N     384      5   17  121     3    4    8   19   29   41   51   64   72   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     385     A     385      5   17  121     2    4   10   17   30   42   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     386     L     386      5   12  121     2    4    6   12   19   29   40   52   62   71   82   92  101  107  111  114  118  120  123  126 
LCS_GDT     R     387     R     387      6   12  121     3    4    6   12   15   23   33   44   57   66   74   87   97  106  111  114  118  120  123  126 
LCS_GDT     L     388     L     388      6   12  121     3    4    6    8   15   20   26   34   41   43   51   66   79   92  105  112  113  118  121  122 
LCS_GDT     S     389     S     389      6   12  121     3    3    6   12   20   27   39   46   58   72   82   92  101  107  111  114  118  120  123  126 
LCS_GDT     V     390     V     390      6   12  121     3    4    6   12   20   30   35   45   58   72   82   92  101  107  111  114  118  119  123  126 
LCS_GDT     G     391     G     391      6   25  121     3    4   10   15   23   35   50   62   71   79   85   95  101  107  111  114  118  120  123  126 
LCS_GDT     R     392     R     392      6   25  121     3    5   10   19   28   41   55   64   72   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     S     393     S     393      4   25  121     3    7   13   19   29   41   55   64   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     T     394     T     394      4   25  121     3    4   13   27   35   48   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     T     395     T     395     21   25  121     3   23   28   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     R     396     R     396     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     397     A     397     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     E     398     E     398     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     399     V     399     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     D     400     D     400     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     401     L     401     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     402     V     402     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     403     V     403     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Q     404     Q     404     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     D     405     D     405     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     406     L     406     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     K     407     K     407     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Q     408     Q     408     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     409     A     409     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     V     410     V     410     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     A     411     A     411     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Q     412     Q     412     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     L     413     L     413     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     E     414     E     414     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     D     415     D     415     21   25  121    18   27   31   36   44   50   57   65   73   84   90   96  102  107  111  114  118  120  123  126 
LCS_GDT     Q     416     Q     416      3   23  120     0    3    7   10   15   22   36   46   56   65   74   80   96  104  107  111  117  120  121  125 
LCS_AVERAGE  LCS_A:  33.56  (   7.74   11.19   81.76 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     18     27     31     36     44     50     57     65     73     84     90     96    102    107    111    114    118    120    123    126 
GDT PERCENT_CA  13.24  19.85  22.79  26.47  32.35  36.76  41.91  47.79  53.68  61.76  66.18  70.59  75.00  78.68  81.62  83.82  86.76  88.24  90.44  92.65
GDT RMS_LOCAL    0.30   0.59   0.76   1.15   1.55   1.73   2.17   2.58   2.82   3.20   3.44   3.63   3.89   4.10   4.28   4.44   4.64   4.80   4.99   5.20
GDT RMS_ALL_CA   7.59   8.26   8.27   7.76   7.49   7.62   7.23   7.12   7.10   7.07   6.99   7.02   7.00   6.99   6.99   6.97   6.93   6.98   6.93   6.94

#      Molecule1      Molecule2       DISTANCE
LGA    E       1      E       1         28.651
LGA    R       2      R       2         25.791
LGA    K       3      K       3         22.319
LGA    V       4      V       4         19.947
LGA    Y       5      Y       5         15.140
LGA    M       6      M       6         15.235
LGA    D       7      D       7         11.435
LGA    Y       8      Y       8         12.193
LGA    E     289      E     289         11.199
LGA    A     290      A     290          9.388
LGA    Y     291      Y     291          9.269
LGA    E     292      E     292          9.118
LGA    A     293      A     293          7.569
LGA    H     294      H     294          6.915
LGA    M     295      M     295          7.263
LGA    R     296      R     296          5.867
LGA    D     297      D     297          4.485
LGA    V     298      V     298          5.008
LGA    R     299      R     299          5.452
LGA    D     300      D     300          3.414
LGA    Y     301      Y     301          3.038
LGA    L     302      L     302          5.093
LGA    E     303      E     303          4.951
LGA    E     304      E     304          3.800
LGA    R     305      R     305          4.680
LGA    L     306      L     306          6.900
LGA    E     307      E     307          6.771
LGA    A     308      A     308          6.116
LGA    E     309      E     309          7.580
LGA    F     310      F     310          6.159
LGA    G     311      G     311          3.011
LGA    Q     312      Q     312          4.946
LGA    K     313      K     313          6.192
LGA    R     314      R     314          2.616
LGA    I     315      I     315          2.979
LGA    H     316      H     316          2.662
LGA    L     317      L     317          4.785
LGA    N     318      N     318          4.757
LGA    S     319      S     319          6.962
LGA    Q     320      Q     320          5.481
LGA    F     321      F     321          2.718
LGA    P     322      P     322          5.675
LGA    G     323      G     323          8.794
LGA    T     324      T     324         10.026
LGA    Q     325      Q     325          9.256
LGA    R     326      R     326          4.841
LGA    L     327      L     327          3.510
LGA    P     328      P     328          7.876
LGA    N     329      N     329          7.993
LGA    T     330      T     330          3.981
LGA    C     331      C     331          5.859
LGA    N     332      N     332          3.415
LGA    F     333      F     333          1.771
LGA    S     334      S     334          1.254
LGA    I     335      I     335          1.931
LGA    R     336      R     336          1.917
LGA    G     337      G     337          1.391
LGA    P     338      P     338          5.136
LGA    R     339      R     339          3.547
LGA    L     340      L     340          4.398
LGA    Q     341      Q     341          2.893
LGA    G     342      G     342          4.963
LGA    H     343      H     343          5.620
LGA    V     344      V     344          4.950
LGA    V     345      V     345          3.997
LGA    L     346      L     346          3.354
LGA    A     347      A     347          5.541
LGA    Q     348      Q     348          6.363
LGA    C     349      C     349          3.727
LGA    R     350      R     350          1.897
LGA    V     351      V     351          2.777
LGA    L     352      L     352          2.330
LGA    M     353      M     353          2.383
LGA    A     354      A     354          2.075
LGA    S     355      S     355          3.442
LGA    V     356      V     356          3.399
LGA    G     357      G     357          4.344
LGA    A     358      A     358          3.928
LGA    A     359      A     359          6.640
LGA    C     360      C     360          7.303
LGA    H     361      H     361          9.754
LGA    S     362      S     362         11.596
LGA    D     363      D     363          6.473
LGA    H     364      H     364          9.177
LGA    G     365      G     365         10.416
LGA    D     366      D     366          7.404
LGA    Q     367      Q     367          2.908
LGA    P     368      P     368          2.160
LGA    S     369      S     369          4.980
LGA    P     370      P     370          4.619
LGA    V     371      V     371          4.346
LGA    L     372      L     372          3.507
LGA    L     373      L     373          3.406
LGA    S     374      S     374          3.811
LGA    Y     375      Y     375          3.472
LGA    G     376      G     376          3.460
LGA    V     377      V     377          3.382
LGA    P     378      P     378          3.521
LGA    F     379      F     379          3.053
LGA    D     380      D     380          2.132
LGA    V     381      V     381          2.535
LGA    A     382      A     382          3.185
LGA    R     383      R     383          2.649
LGA    N     384      N     384          5.259
LGA    A     385      A     385          5.065
LGA    L     386      L     386          8.499
LGA    R     387      R     387         10.260
LGA    L     388      L     388         12.512
LGA    S     389      S     389          9.964
LGA    V     390      V     390         10.075
LGA    G     391      G     391          8.805
LGA    R     392      R     392          6.920
LGA    S     393      S     393          6.690
LGA    T     394      T     394          3.686
LGA    T     395      T     395          2.073
LGA    R     396      R     396          0.859
LGA    A     397      A     397          1.097
LGA    E     398      E     398          0.989
LGA    V     399      V     399          1.189
LGA    D     400      D     400          1.766
LGA    L     401      L     401          1.592
LGA    V     402      V     402          1.193
LGA    V     403      V     403          1.477
LGA    Q     404      Q     404          2.023
LGA    D     405      D     405          2.020
LGA    L     406      L     406          1.732
LGA    K     407      K     407          2.513
LGA    Q     408      Q     408          2.814
LGA    A     409      A     409          2.678
LGA    V     410      V     410          2.891
LGA    A     411      A     411          3.336
LGA    Q     412      Q     412          3.557
LGA    L     413      L     413          3.673
LGA    E     414      E     414          3.853
LGA    D     415      D     415          3.757
LGA    Q     416      Q     416          9.218

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  136  136    4.0     65    2.58    44.485    37.547     2.426

LGA_LOCAL      RMSD =  2.580  Number of atoms =   65  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  7.180  Number of atoms =  136 
Std_ALL_ATOMS  RMSD =  6.775  (standard rmsd on all 136 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.277443 * X  +  -0.879088 * Y  +   0.387595 * Z  + -14.662942
  Y_new =  -0.627648 * X  +  -0.471288 * Y  +  -0.619633 * Z  + -10.645323
  Z_new =   0.727381 * X  +  -0.071360 * Y  +  -0.682513 * Z  +  12.802091 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.037416    0.104177  [ DEG:  -174.0311      5.9689 ]
  Theta =  -0.814498   -2.327095  [ DEG:   -46.6673   -133.3327 ]
  Phi   =  -1.154584    1.987008  [ DEG:   -66.1528    113.8472 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0339TS393_2-D1                               
REMARK     2: T0339_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0339TS393_2-D1.T0339_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  136  136   4.0   65   2.58  37.547     6.78
REMARK  ---------------------------------------------------------- 
MOLECULE T0339TS393_2-D1
PFRMAT TS
TARGET T0339
MODEL 2
PARENT N/A
ATOM      1  CA  GLU     1       3.024 -24.093  22.435  1.00 25.00           C
ATOM      2  CA  ARG     2       0.355 -22.690  24.762  1.00 25.00           C
ATOM      3  CA  LYS     3      -3.111 -23.695  26.056  1.00 25.00           C
ATOM      4  CA  VAL     4      -5.981 -22.361  23.983  1.00 25.00           C
ATOM      5  CA  TYR     5      -9.300 -24.189  24.370  1.00 25.00           C
ATOM      6  CA  MET     6     -12.234 -22.681  22.427  1.00 25.00           C
ATOM      7  CA  ASP     7     -12.442 -20.695  19.195  1.00 25.00           C
ATOM      8  CA  TYR     8     -15.962 -19.625  20.296  1.00 25.00           C
ATOM    289  CA  GLU   289      -4.839 -22.770  11.576  1.00 25.00           C
ATOM    290  CA  ALA   290      -2.707 -25.946  11.763  1.00 25.00           C
ATOM    291  CA  TYR   291      -5.846 -28.105  11.369  1.00 25.00           C
ATOM    292  CA  GLU   292      -6.916 -26.036   8.328  1.00 25.00           C
ATOM    293  CA  ALA   293      -3.434 -26.454   6.789  1.00 25.00           C
ATOM    294  CA  HIS   294      -3.602 -30.235   7.373  1.00 25.00           C
ATOM    295  CA  MET   295      -7.053 -30.362   5.719  1.00 25.00           C
ATOM    296  CA  ARG   296      -5.715 -28.395   2.718  1.00 25.00           C
ATOM    297  CA  ASP   297      -2.757 -30.809   2.424  1.00 25.00           C
ATOM    298  CA  VAL   298      -5.151 -33.795   2.536  1.00 25.00           C
ATOM    299  CA  ARG   299      -7.306 -32.202  -0.199  1.00 25.00           C
ATOM    300  CA  ASP   300      -4.192 -31.627  -2.352  1.00 25.00           C
ATOM    301  CA  TYR   301      -3.146 -35.277  -1.861  1.00 25.00           C
ATOM    302  CA  LEU   302      -6.653 -36.443  -2.870  1.00 25.00           C
ATOM    303  CA  GLU   303      -6.509 -34.245  -6.001  1.00 25.00           C
ATOM    304  CA  GLU   304      -3.082 -35.701  -6.896  1.00 25.00           C
ATOM    305  CA  ARG   305      -4.444 -39.251  -6.443  1.00 25.00           C
ATOM    306  CA  LEU   306      -7.427 -38.420  -8.697  1.00 25.00           C
ATOM    307  CA  GLU   307      -5.056 -37.016 -11.358  1.00 25.00           C
ATOM    308  CA  ALA   308      -2.926 -40.193 -11.171  1.00 25.00           C
ATOM    309  CA  GLU   309      -6.064 -42.351 -11.566  1.00 25.00           C
ATOM    310  CA  PHE   310      -8.514 -43.384  -8.828  1.00 25.00           C
ATOM    311  CA  GLY   311     -11.501 -41.229  -9.871  1.00 25.00           C
ATOM    312  CA  GLN   312     -14.350 -38.809  -8.983  1.00 25.00           C
ATOM    313  CA  LYS   313     -15.531 -37.404  -5.645  1.00 25.00           C
ATOM    314  CA  ARG   314     -16.010 -33.865  -6.936  1.00 25.00           C
ATOM    315  CA  ILE   315     -15.228 -30.629  -5.053  1.00 25.00           C
ATOM    316  CA  HIS   316     -17.890 -27.992  -4.574  1.00 25.00           C
ATOM    317  CA  LEU   317     -16.668 -24.450  -3.935  1.00 25.00           C
ATOM    318  CA  ASN   318     -13.613 -22.270  -4.590  1.00 25.00           C
ATOM    319  CA  SER   319     -11.531 -24.535  -6.850  1.00 25.00           C
ATOM    320  CA  GLN   320      -9.088 -22.163  -8.488  1.00 25.00           C
ATOM    321  CA  PHE   321      -8.761 -20.493  -5.138  1.00 25.00           C
ATOM    322  CA  PRO   322      -5.206 -21.322  -4.200  1.00 25.00           C
ATOM    323  CA  GLY   323      -6.787 -24.276  -2.446  1.00 25.00           C
ATOM    324  CA  THR   324      -8.826 -25.399   0.536  1.00 25.00           C
ATOM    325  CA  GLN   325      -9.918 -24.136   3.986  1.00 25.00           C
ATOM    326  CA  ARG   326     -10.697 -20.795   5.532  1.00 25.00           C
ATOM    327  CA  LEU   327      -8.245 -18.453   7.164  1.00 25.00           C
ATOM    328  CA  PRO   328      -9.222 -20.812   9.933  1.00 25.00           C
ATOM    329  CA  ASN   329     -11.592 -23.417  11.383  1.00 25.00           C
ATOM    330  CA  THR   330     -11.940 -25.866   8.488  1.00 25.00           C
ATOM    331  CA  CYS   331     -14.783 -25.189   6.108  1.00 25.00           C
ATOM    332  CA  ASN   332     -16.748 -28.191   5.038  1.00 25.00           C
ATOM    333  CA  PHE   333     -15.537 -29.810   1.852  1.00 25.00           C
ATOM    334  CA  SER   334     -18.268 -31.013  -0.530  1.00 25.00           C
ATOM    335  CA  ILE   335     -19.700 -33.936  -2.394  1.00 25.00           C
ATOM    336  CA  ARG   336     -22.176 -34.057  -5.289  1.00 25.00           C
ATOM    337  CA  GLY   337     -24.659 -36.888  -5.112  1.00 25.00           C
ATOM    338  CA  PRO   338     -22.911 -38.486  -2.194  1.00 25.00           C
ATOM    339  CA  ARG   339     -25.738 -36.940  -0.201  1.00 25.00           C
ATOM    340  CA  LEU   340     -24.006 -34.040   1.586  1.00 25.00           C
ATOM    341  CA  GLN   341     -25.327 -34.185   5.177  1.00 25.00           C
ATOM    342  CA  GLY   342     -25.559 -38.002   4.964  1.00 25.00           C
ATOM    343  CA  HIS   343     -21.962 -38.172   3.658  1.00 25.00           C
ATOM    344  CA  VAL   344     -20.787 -35.937   6.537  1.00 25.00           C
ATOM    345  CA  VAL   345     -22.597 -38.184   9.054  1.00 25.00           C
ATOM    346  CA  LEU   346     -20.951 -41.279   7.514  1.00 25.00           C
ATOM    347  CA  ALA   347     -17.517 -39.597   7.743  1.00 25.00           C
ATOM    348  CA  GLN   348     -18.163 -38.727  11.417  1.00 25.00           C
ATOM    349  CA  CYS   349     -19.179 -42.352  12.124  1.00 25.00           C
ATOM    350  CA  ARG   350     -15.453 -43.296  12.307  1.00 25.00           C
ATOM    351  CA  VAL   351     -12.780 -40.830  13.323  1.00 25.00           C
ATOM    352  CA  LEU   352     -11.197 -37.844  11.644  1.00 25.00           C
ATOM    353  CA  MET   353     -14.011 -35.278  11.468  1.00 25.00           C
ATOM    354  CA  ALA   354     -15.108 -31.739  10.679  1.00 25.00           C
ATOM    355  CA  SER   355     -16.548 -28.274  10.242  1.00 25.00           C
ATOM    356  CA  VAL   356     -20.198 -28.399  11.411  1.00 25.00           C
ATOM    357  CA  GLY   357     -19.574 -25.713  13.998  1.00 25.00           C
ATOM    358  CA  ALA   358     -19.383 -23.001  16.637  1.00 25.00           C
ATOM    359  CA  ALA   359     -17.943 -20.042  14.796  1.00 25.00           C
ATOM    360  CA  CYS   360     -21.256 -18.312  15.478  1.00 25.00           C
ATOM    361  CA  HIS   361     -22.229 -19.490  12.029  1.00 25.00           C
ATOM    362  CA  SER   362     -20.621 -22.390  10.240  1.00 25.00           C
ATOM    363  CA  ASP   363     -23.742 -24.624  10.309  1.00 25.00           C
ATOM    364  CA  HIS   364     -26.312 -21.779  10.143  1.00 25.00           C
ATOM    365  CA  GLY   365     -27.804 -24.272  12.559  1.00 25.00           C
ATOM    366  CA  ASP   366     -27.363 -27.679  11.041  1.00 25.00           C
ATOM    367  CA  GLN   367     -29.407 -26.473   8.085  1.00 25.00           C
ATOM    368  CA  PRO   368     -26.128 -26.165   6.232  1.00 25.00           C
ATOM    369  CA  SER   369     -28.143 -26.071   2.976  1.00 25.00           C
ATOM    370  CA  PRO   370     -29.797 -22.794   4.065  1.00 25.00           C
ATOM    371  CA  VAL   371     -26.365 -21.303   4.877  1.00 25.00           C
ATOM    372  CA  LEU   372     -25.058 -22.374   1.440  1.00 25.00           C
ATOM    373  CA  LEU   373     -28.101 -20.770  -0.244  1.00 25.00           C
ATOM    374  CA  SER   374     -27.506 -17.531   1.712  1.00 25.00           C
ATOM    375  CA  TYR   375     -23.827 -17.537   0.651  1.00 25.00           C
ATOM    376  CA  GLY   376     -25.061 -16.533  -2.796  1.00 25.00           C
ATOM    377  CA  VAL   377     -23.061 -19.586  -3.930  1.00 25.00           C
ATOM    378  CA  PRO   378     -24.457 -21.527  -6.920  1.00 25.00           C
ATOM    379  CA  PHE   379     -26.309 -24.550  -5.403  1.00 25.00           C
ATOM    380  CA  ASP   380     -26.881 -28.333  -5.583  1.00 25.00           C
ATOM    381  CA  VAL   381     -23.107 -28.914  -5.882  1.00 25.00           C
ATOM    382  CA  ALA   382     -22.495 -26.661  -2.846  1.00 25.00           C
ATOM    383  CA  ARG   383     -24.437 -28.795  -0.364  1.00 25.00           C
ATOM    384  CA  ASN   384     -21.613 -27.724   1.996  1.00 25.00           C
ATOM    385  CA  ALA   385     -18.488 -25.827   0.952  1.00 25.00           C
ATOM    386  CA  LEU   386     -14.974 -24.404   1.170  1.00 25.00           C
ATOM    387  CA  ARG   387     -12.456 -21.605   0.452  1.00 25.00           C
ATOM    388  CA  LEU   388      -8.817 -20.767   0.840  1.00 25.00           C
ATOM    389  CA  SER   389      -6.151 -21.585   3.388  1.00 25.00           C
ATOM    390  CA  VAL   390      -3.528 -21.408   6.172  1.00 25.00           C
ATOM    391  CA  GLY   391      -0.730 -22.552   8.518  1.00 25.00           C
ATOM    392  CA  ARG   392       2.004 -24.520  10.258  1.00 25.00           C
ATOM    393  CA  SER   393       1.879 -28.129  11.301  1.00 25.00           C
ATOM    394  CA  THR   394      -0.014 -31.436  10.808  1.00 25.00           C
ATOM    395  CA  THR   395      -0.777 -34.788   9.120  1.00 25.00           C
ATOM    396  CA  ARG   396      -0.697 -37.195   6.191  1.00 25.00           C
ATOM    397  CA  ALA   397      -1.416 -40.920   6.717  1.00 25.00           C
ATOM    398  CA  GLU   398      -4.563 -40.054   8.719  1.00 25.00           C
ATOM    399  CA  VAL   399      -5.718 -37.697   5.932  1.00 25.00           C
ATOM    400  CA  ASP   400      -5.138 -40.447   3.331  1.00 25.00           C
ATOM    401  CA  LEU   401      -7.152 -42.916   5.456  1.00 25.00           C
ATOM    402  CA  VAL   402     -10.001 -40.374   5.753  1.00 25.00           C
ATOM    403  CA  VAL   403      -9.966 -39.853   1.958  1.00 25.00           C
ATOM    404  CA  GLN   404     -10.096 -43.642   1.413  1.00 25.00           C
ATOM    405  CA  ASP   405     -13.055 -43.912   3.830  1.00 25.00           C
ATOM    406  CA  LEU   406     -14.864 -41.096   1.969  1.00 25.00           C
ATOM    407  CA  LYS   407     -14.245 -42.870  -1.367  1.00 25.00           C
ATOM    408  CA  GLN   408     -15.619 -46.136   0.086  1.00 25.00           C
ATOM    409  CA  ALA   409     -18.728 -44.294   1.352  1.00 25.00           C
ATOM    410  CA  VAL   410     -19.242 -42.733  -2.108  1.00 25.00           C
ATOM    411  CA  ALA   411     -18.922 -46.183  -3.739  1.00 25.00           C
ATOM    412  CA  GLN   412     -21.487 -47.611  -1.279  1.00 25.00           C
ATOM    413  CA  LEU   413     -23.884 -44.731  -2.068  1.00 25.00           C
ATOM    414  CA  GLU   414     -23.454 -45.369  -5.820  1.00 25.00           C
ATOM    415  CA  ASP   415     -24.175 -49.093  -5.294  1.00 25.00           C
ATOM    416  CA  GLN   416     -21.077 -51.274  -5.563  1.00 25.00           C
TER
END
