
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  136 (  136),  selected  136 , name T0339TS393_3-D1
# Molecule2: number of CA atoms  136 ( 1077),  selected  136 , name T0339_D1.pdb
# PARAMETERS: T0339TS393_3-D1.T0339_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   109       308 - 416         5.00     5.90
  LCS_AVERAGE:     69.38

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34       382 - 415         1.98     6.56
  LONGEST_CONTINUOUS_SEGMENT:    34       383 - 416         2.00     6.52
  LCS_AVERAGE:     13.02

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       394 - 416         0.90     7.85
  LCS_AVERAGE:      8.11

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  136
LCS_GDT     E       1     E       1      3    8    9     3    3    5    8    8    9   11   12   17   21   29   34   47   61   66   84   96  101  119  123 
LCS_GDT     R       2     R       2      4    8   17     3    4    5    8    9   11   13   16   20   25   38   56   66   74   87  102  110  119  125  130 
LCS_GDT     K       3     K       3      4    8   17     3    4    5    8    9   11   13   17   32   36   49   56   80   96  103  113  118  124  128  131 
LCS_GDT     V       4     V       4      4    8   17     3    4    5    6   12   19   27   39   57   72   82   90  100  107  115  120  123  127  129  132 
LCS_GDT     Y       5     Y       5      4    8   17     3    4    5   10   13   21   28   42   60   72   82   90  100  110  115  120  123  127  129  132 
LCS_GDT     M       6     M       6      4    8   25     3    4    5    6   13   20   27   43   57   72   82   90  100  110  115  120  123  127  129  132 
LCS_GDT     D       7     D       7      4    8   26     3    4    9   10   13   20   28   47   58   72   82   91  101  110  115  120  123  127  129  132 
LCS_GDT     Y       8     Y       8      3    8   26     0    3    5    8   12   18   23   34   40   54   62   73   82   91  105  111  121  125  129  132 
LCS_GDT     E     289     E     289     21   22   42    12   21   21   21   22   23   26   35   41   51   74   81   93  103  113  119  123  127  129  132 
LCS_GDT     A     290     A     290     21   22   42    12   21   21   21   22   23   26   29   39   49   58   77   86   97  111  116  122  127  129  132 
LCS_GDT     Y     291     Y     291     21   22   42    12   21   21   21   22   23   26   34   40   49   67   78   92  100  111  118  123  127  129  132 
LCS_GDT     E     292     E     292     21   22   42    12   21   21   21   22   23   26   35   60   67   82   92  104  110  115  120  123  127  129  132 
LCS_GDT     A     293     A     293     21   22   42    13   21   21   21   22   23   26   35   47   67   80   92  102  110  115  120  123  127  129  132 
LCS_GDT     H     294     H     294     21   22   42    13   21   21   21   22   23   26   34   41   49   67   83   98  106  114  120  123  127  129  132 
LCS_GDT     M     295     M     295     21   22   42    13   21   21   21   22   23   26   35   51   66   79   92  104  110  115  120  123  127  129  132 
LCS_GDT     R     296     R     296     21   22   42    13   21   21   21   22   29   43   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     D     297     D     297     21   22   42    13   21   21   21   22   24   29   42   60   73   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     298     V     298     21   22   42    13   21   21   21   22   23   26   35   44   65   82   93  104  110  115  120  123  127  129  132 
LCS_GDT     R     299     R     299     21   22   42    13   21   21   21   22   31   40   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     D     300     D     300     21   22   42    13   21   21   21   22   31   43   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Y     301     Y     301     21   22   42    13   21   21   21   22   29   40   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     302     L     302     21   22   42    13   21   21   21   22   30   38   49   57   72   83   93  104  110  115  120  123  127  129  132 
LCS_GDT     E     303     E     303     21   22   42    13   21   21   21   22   30   39   49   57   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     E     304     E     304     21   22   42    13   21   21   21   22   31   40   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     R     305     R     305     21   22   42    13   21   21   21   22   30   38   49   62   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     306     L     306     21   22   42    13   21   21   21   22   23   26   27   34   46   63   78   89   99  110  114  121  126  129  132 
LCS_GDT     E     307     E     307     21   22   42    12   21   21   21   22   23   26   27   32   41   64   81   88   99  112  119  123  127  129  132 
LCS_GDT     A     308     A     308     21   22  109    13   21   21   21   22   25   34   47   62   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     E     309     E     309     21   22  109    12   21   21   21   22   23   26   27   35   55   65   78   87  101  109  114  119  125  129  132 
LCS_GDT     F     310     F     310      3   22  109     3    3    3    9   19   23   33   50   60   73   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     G     311     G     311      3    6  109     1    5    9   16   26   37   48   55   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     312     Q     312      3    6  109     3    3    4    8   18   30   40   53   63   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     K     313     K     313      3    6  109     3    4    7   10   13   20   32   47   57   71   82   92  104  110  115  120  123  127  129  132 
LCS_GDT     R     314     R     314      4    6  109    19   22   25   27   31   40   47   56   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     I     315     I     315      4    6  109    19   22   25   27   32   40   47   56   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     H     316     H     316      4    6  109     3   20   25   27   32   40   47   56   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     317     L     317      4    6  109     3   12   25   27   32   40   47   56   65   73   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     N     318     N     318      3    6  109     3    4    5   15   23   39   48   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     S     319     S     319      5    6  109     3    3    5   11   20   30   40   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     320     Q     320      5    6  109     3    3    5   11   33   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     F     321     F     321      5   11  109     3    3    5   10   15   30   46   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     P     322     P     322      5   11  109     3    3    5    6   15   24   46   52   64   73   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     G     323     G     323      5   11  109     3    3    7   10   13   17   21   25   37   50   69   85   98  107  114  120  123  127  129  132 
LCS_GDT     T     324     T     324      5   11  109     3    4    6    8   14   15   24   33   44   58   72   85   98  107  115  120  123  127  129  132 
LCS_GDT     Q     325     Q     325      7   12  109     2    5    9   19   22   38   48   54   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     R     326     R     326      7   12  109     3    8    9   31   37   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     327     L     327      7   12  109     5   12   24   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     P     328     P     328      7   12  109     3    6   14   28   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     N     329     N     329      7   12  109     3    5    9   17   27   40   47   57   65   73   82   94  104  110  115  120  123  127  129  132 
LCS_GDT     T     330     T     330      7   12  109     3    6   11   28   38   43   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     C     331     C     331      7   12  109     3    5    9   17   21   33   47   56   63   72   82   94  104  110  115  120  123  127  129  132 
LCS_GDT     N     332     N     332      6   12  109     3    5    9   10   21   33   47   53   62   71   82   94  104  110  115  120  123  127  129  132 
LCS_GDT     F     333     F     333      6   12  109     3    3    5   10   13   16   22   33   44   56   65   67   77   85   97  111  121  126  129  131 
LCS_GDT     S     334     S     334      6   12  109     3    7    9   10   13   19   22   32   45   56   65   70   80   95  108  118  123  127  129  132 
LCS_GDT     I     335     I     335      6   12  109     3    5    9   11   13   19   21   27   36   49   59   73   80   96  108  118  123  127  129  132 
LCS_GDT     R     336     R     336      4   12  109     3    5    8   11   17   25   36   47   55   68   82   92  102  110  115  120  123  127  129  132 
LCS_GDT     G     337     G     337      4    7  109     3   21   24   27   30   38   47   56   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     P     338     P     338      4    7  109     3    3    5    6   11   13   25   43   58   73   83   91  102  110  115  120  123  127  129  132 
LCS_GDT     R     339     R     339      3    7  109     3    4   21   27   28   37   47   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     340     L     340      3    7  109     4    7   13   16   24   31   47   54   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     341     Q     341     10   10  109     9    9    9   23   26   31   42   52   62   71   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     G     342     G     342     10   10  109     9    9    9   10   10   20   24   41   50   56   78   86   95  107  114  120  123  127  129  132 
LCS_GDT     H     343     H     343     10   10  109     9    9    9   10   12   21   27   47   61   73   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     344     V     344     10   10  109     9    9    9   10   19   31   42   55   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     345     V     345     10   10  109     9    9    9   10   25   29   42   52   62   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     346     L     346     10   10  109     9    9    9   16   29   36   44   51   62   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     A     347     A     347     10   10  109     9    9    9   11   20   30   39   49   62   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     348     Q     348     10   10  109     9    9    9   13   20   31   40   52   65   74   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     C     349     C     349     10   10  109     9    9    9   10   22   38   47   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     R     350     R     350     10   10  109     2    5    9   19   26   37   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     351     V     351      5    7  109     3    5    7   12   23   31   45   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     352     L     352      5    7  109     3    5    8   14   27   37   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     M     353     M     353      5    7  109     3    6   10   29   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     A     354     A     354      5    7  109     3    5    8   28   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     S     355     S     355      4    7  109     4    7    8   15   22   37   45   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     356     V     356      4    7  109     4    7    8   11   22   29   47   53   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     G     357     G     357      4    7  109     4    7    8   11   18   29   47   52   62   71   82   94  104  110  115  120  123  127  129  132 
LCS_GDT     A     358     A     358      4    7  109     4    7    8   11   22   29   42   52   62   71   82   94  104  110  115  120  123  127  129  132 
LCS_GDT     A     359     A     359      3    5  109     3    4    6   14   20   32   43   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     C     360     C     360      3    5  109     3    3    5   10   19   31   40   52   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     H     361     H     361      3    5  109     3    3    4    5    6    9   15   18   44   57   67   77   91  102  114  119  123  127  129  132 
LCS_GDT     S     362     S     362      3    5  109     3    3    4    5    6    9   27   40   49   58   67   77   86   94  110  119  123  126  129  132 
LCS_GDT     D     363     D     363      3    5  109     3    3    5    9   20   31   40   52   61   70   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     H     364     H     364      3    5  109     2    3    3   10   16   29   39   52   62   74   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     G     365     G     365      3    5  109     3    3    3    5   16   27   33   49   55   64   77   91  101  110  115  120  123  127  129  132 
LCS_GDT     D     366     D     366      4    5  109     3    3    6    6    9   19   29   43   51   63   77   90  101  109  115  120  123  127  129  132 
LCS_GDT     Q     367     Q     367      4    5  109     3    3    6    6    7   11   19   22   34   39   49   62   77   93  102  114  122  125  129  132 
LCS_GDT     P     368     P     368      4   12  109     3    3    6    7   11   19   29   43   55   71   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     S     369     S     369     10   14  109     7    9   13   24   32   45   50   55   64   73   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     P     370     P     370     10   14  109     7    9   11   12   16   41   51   57   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     371     V     371     10   14  109     7    9   11   12   16   30   46   54   61   73   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     372     L     372     10   14  109     7    9   13   24   38   45   51   57   64   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     373     L     373     10   14  109     7   12   24   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     S     374     S     374     10   14  109     7    9   11   31   37   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Y     375     Y     375     10   14  109     7    9   21   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     G     376     G     376     10   14  109     3   12   24   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     377     V     377     10   14  109     4    9   11   14   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     P     378     P     378     10   14  109     3    4   11   28   38   43   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     F     379     F     379     10   14  109     4    9   11   21   38   44   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     D     380     D     380      4   14  109     4    4    5   11   19   38   47   55   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     381     V     381      4   14  109     4    4    4   11   13   20   36   53   62   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     A     382     A     382      4   34  109     4    9   11   26   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     R     383     R     383      3   34  109     3    8   13   21   28   37   46   55   60   69   79   90   99  110  115  120  123  127  129  132 
LCS_GDT     N     384     N     384      3   34  109     3    3   24   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     A     385     A     385      3   34  109     3    6   13   22   33   44   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     386     L     386      6   34  109     3    8   22   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     R     387     R     387      6   34  109     3    8   22   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     388     L     388      6   34  109     3   12   24   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     S     389     S     389      6   34  109     3    9   21   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     390     V     390      6   34  109     3    8   18   28   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     G     391     G     391      6   34  109     3    8   12   27   38   45   51   57   64   74   83   95  104  110  115  120  123  127  129  132 
LCS_GDT     R     392     R     392      5   34  109     3    3    7   15   24   35   46   55   61   67   77   88   99  110  115  120  123  127  129  132 
LCS_GDT     S     393     S     393      7   34  109     4    5   18   30   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     T     394     T     394     23   34  109     4    7   20   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     T     395     T     395     23   34  109     4   17   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     R     396     R     396     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     A     397     A     397     23   34  109    19   22   25   31   38   45   51   56   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     E     398     E     398     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     399     V     399     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     D     400     D     400     23   34  109    17   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     401     L     401     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     402     V     402     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     403     V     403     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     404     Q     404     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     D     405     D     405     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     406     L     406     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     K     407     K     407     23   34  109    15   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     408     Q     408     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     A     409     A     409     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     V     410     V     410     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     A     411     A     411     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     412     Q     412     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     L     413     L     413     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     E     414     E     414     23   34  109    19   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     D     415     D     415     23   34  109    14   22   25   31   38   45   51   57   65   74   84   95  104  110  115  120  123  127  129  132 
LCS_GDT     Q     416     Q     416     23   34  109     0    3   11   27   38   45   51   57   64   73   84   95  104  110  115  120  123  127  129  132 
LCS_AVERAGE  LCS_A:  30.17  (   8.11   13.02   69.38 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     22     25     31     38     45     51     57     65     74     84     95    104    110    115    120    123    127    129    132 
GDT PERCENT_CA  13.97  16.18  18.38  22.79  27.94  33.09  37.50  41.91  47.79  54.41  61.76  69.85  76.47  80.88  84.56  88.24  90.44  93.38  94.85  97.06
GDT RMS_LOCAL    0.32   0.37   0.69   1.34   1.63   1.89   2.20   2.60   3.07   3.41   3.73   4.04   4.31   4.51   4.69   4.88   5.01   5.22   5.30   5.46
GDT RMS_ALL_CA   8.01   7.99   7.60   6.31   6.36   6.45   6.31   6.24   6.01   5.89   5.95   5.93   5.92   5.90   5.87   5.87   5.89   5.88   5.88   5.88

#      Molecule1      Molecule2       DISTANCE
LGA    E       1      E       1         15.543
LGA    R       2      R       2         12.121
LGA    K       3      K       3          9.954
LGA    V       4      V       4          5.973
LGA    Y       5      Y       5          5.006
LGA    M       6      M       6          5.582
LGA    D       7      D       7          5.163
LGA    Y       8      Y       8          8.017
LGA    E     289      E     289          9.561
LGA    A     290      A     290         10.742
LGA    Y     291      Y     291          9.849
LGA    E     292      E     292          7.895
LGA    A     293      A     293          8.762
LGA    H     294      H     294          9.874
LGA    M     295      M     295          8.464
LGA    R     296      R     296          7.040
LGA    D     297      D     297          8.275
LGA    V     298      V     298          9.067
LGA    R     299      R     299          8.148
LGA    D     300      D     300          7.311
LGA    Y     301      Y     301          8.390
LGA    L     302      L     302          9.426
LGA    E     303      E     303          8.264
LGA    E     304      E     304          7.524
LGA    R     305      R     305          9.528
LGA    L     306      L     306         10.777
LGA    E     307      E     307          8.983
LGA    A     308      A     308          8.797
LGA    E     309      E     309         12.060
LGA    F     310      F     310          7.587
LGA    G     311      G     311          5.219
LGA    Q     312      Q     312          7.346
LGA    K     313      K     313          7.950
LGA    R     314      R     314          5.033
LGA    I     315      I     315          4.258
LGA    H     316      H     316          4.367
LGA    L     317      L     317          5.245
LGA    N     318      N     318          3.450
LGA    S     319      S     319          5.297
LGA    Q     320      Q     320          3.861
LGA    F     321      F     321          3.281
LGA    P     322      P     322          4.020
LGA    G     323      G     323          8.150
LGA    T     324      T     324          8.449
LGA    Q     325      Q     325          4.618
LGA    R     326      R     326          2.757
LGA    L     327      L     327          1.086
LGA    P     328      P     328          3.351
LGA    N     329      N     329          3.910
LGA    T     330      T     330          3.056
LGA    C     331      C     331          5.366
LGA    N     332      N     332          6.001
LGA    F     333      F     333         10.675
LGA    S     334      S     334         10.462
LGA    I     335      I     335         11.123
LGA    R     336      R     336          9.717
LGA    G     337      G     337          5.023
LGA    P     338      P     338          5.447
LGA    R     339      R     339          3.953
LGA    L     340      L     340          5.631
LGA    Q     341      Q     341          6.249
LGA    G     342      G     342          7.288
LGA    H     343      H     343          5.263
LGA    V     344      V     344          4.463
LGA    V     345      V     345          5.100
LGA    L     346      L     346          5.063
LGA    A     347      A     347          5.720
LGA    Q     348      Q     348          5.200
LGA    C     349      C     349          3.425
LGA    R     350      R     350          2.683
LGA    V     351      V     351          2.660
LGA    L     352      L     352          1.891
LGA    M     353      M     353          1.032
LGA    A     354      A     354          1.509
LGA    S     355      S     355          3.525
LGA    V     356      V     356          5.442
LGA    G     357      G     357          6.715
LGA    A     358      A     358          7.019
LGA    A     359      A     359          7.071
LGA    C     360      C     360          7.930
LGA    H     361      H     361         10.147
LGA    S     362      S     362         10.679
LGA    D     363      D     363          7.408
LGA    H     364      H     364          8.632
LGA    G     365      G     365          8.764
LGA    D     366      D     366          8.425
LGA    Q     367      Q     367          9.274
LGA    P     368      P     368          5.681
LGA    S     369      S     369          4.197
LGA    P     370      P     370          3.416
LGA    V     371      V     371          4.609
LGA    L     372      L     372          3.661
LGA    L     373      L     373          1.024
LGA    S     374      S     374          2.185
LGA    Y     375      Y     375          2.010
LGA    G     376      G     376          1.602
LGA    V     377      V     377          3.536
LGA    P     378      P     378          3.922
LGA    F     379      F     379          3.737
LGA    D     380      D     380          6.455
LGA    V     381      V     381          6.334
LGA    A     382      A     382          3.522
LGA    R     383      R     383          5.524
LGA    N     384      N     384          2.477
LGA    A     385      A     385          3.452
LGA    L     386      L     386          3.003
LGA    R     387      R     387          2.906
LGA    L     388      L     388          1.725
LGA    S     389      S     389          2.090
LGA    V     390      V     390          3.542
LGA    G     391      G     391          3.439
LGA    R     392      R     392          6.394
LGA    S     393      S     393          3.622
LGA    T     394      T     394          3.569
LGA    T     395      T     395          2.685
LGA    R     396      R     396          2.371
LGA    A     397      A     397          4.064
LGA    E     398      E     398          3.725
LGA    V     399      V     399          1.525
LGA    D     400      D     400          2.970
LGA    L     401      L     401          3.911
LGA    V     402      V     402          2.247
LGA    V     403      V     403          1.507
LGA    Q     404      Q     404          3.395
LGA    D     405      D     405          3.146
LGA    L     406      L     406          1.171
LGA    K     407      K     407          2.926
LGA    Q     408      Q     408          3.617
LGA    A     409      A     409          2.254
LGA    V     410      V     410          1.843
LGA    A     411      A     411          3.448
LGA    Q     412      Q     412          3.259
LGA    L     413      L     413          1.895
LGA    E     414      E     414          2.869
LGA    D     415      D     415          3.707
LGA    Q     416      Q     416          2.629

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  136  136    4.0     57    2.60    42.279    35.603     2.113

LGA_LOCAL      RMSD =  2.597  Number of atoms =   57  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.237  Number of atoms =  136 
Std_ALL_ATOMS  RMSD =  5.851  (standard rmsd on all 136 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.221388 * X  +  -0.731367 * Y  +   0.645051 * Z  +  -9.433556
  Y_new =  -0.933404 * X  +  -0.032624 * Y  +  -0.357342 * Z  + -15.922521
  Z_new =   0.282392 * X  +  -0.681204 * Y  +  -0.675438 * Z  +  15.678664 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.351944    0.789648  [ DEG:  -134.7565     45.2435 ]
  Theta =  -0.286287   -2.855306  [ DEG:   -16.4030   -163.5970 ]
  Phi   =  -1.803676    1.337916  [ DEG:  -103.3430     76.6570 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0339TS393_3-D1                               
REMARK     2: T0339_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0339TS393_3-D1.T0339_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  136  136   4.0   57   2.60  35.603     5.85
REMARK  ---------------------------------------------------------- 
MOLECULE T0339TS393_3-D1
PFRMAT TS
TARGET T0339
MODEL 3
PARENT N/A
ATOM      1  CA  GLU     1       0.102 -38.191  21.117  1.00 25.00           C
ATOM      2  CA  ARG     2      -3.034 -36.832  22.860  1.00 25.00           C
ATOM      3  CA  LYS     3      -6.127 -35.153  21.494  1.00 25.00           C
ATOM      4  CA  VAL     4      -7.533 -35.274  17.923  1.00 25.00           C
ATOM      5  CA  TYR     5     -10.670 -33.139  18.625  1.00 25.00           C
ATOM      6  CA  MET     6     -10.531 -30.110  16.264  1.00 25.00           C
ATOM      7  CA  ASP     7     -12.835 -27.213  17.259  1.00 25.00           C
ATOM      8  CA  TYR     8     -14.749 -24.970  19.627  1.00 25.00           C
ATOM    289  CA  GLU   289       0.569 -28.326   9.110  1.00 25.00           C
ATOM    290  CA  ALA   290      -1.023 -31.808   9.218  1.00 25.00           C
ATOM    291  CA  TYR   291      -4.425 -30.308   8.303  1.00 25.00           C
ATOM    292  CA  GLU   292      -2.835 -28.421   5.376  1.00 25.00           C
ATOM    293  CA  ALA   293      -1.165 -31.650   4.168  1.00 25.00           C
ATOM    294  CA  HIS   294      -4.518 -33.490   4.378  1.00 25.00           C
ATOM    295  CA  MET   295      -6.204 -30.696   2.373  1.00 25.00           C
ATOM    296  CA  ARG   296      -3.447 -30.900  -0.278  1.00 25.00           C
ATOM    297  CA  ASP   297      -3.901 -34.697  -0.491  1.00 25.00           C
ATOM    298  CA  VAL   298      -7.682 -34.248  -0.904  1.00 25.00           C
ATOM    299  CA  ARG   299      -7.097 -31.680  -3.685  1.00 25.00           C
ATOM    300  CA  ASP   300      -4.701 -34.095  -5.445  1.00 25.00           C
ATOM    301  CA  TYR   301      -7.299 -36.897  -5.190  1.00 25.00           C
ATOM    302  CA  LEU   302      -9.975 -34.583  -6.657  1.00 25.00           C
ATOM    303  CA  GLU   303      -7.629 -33.659  -9.540  1.00 25.00           C
ATOM    304  CA  GLU   304      -6.950 -37.367 -10.210  1.00 25.00           C
ATOM    305  CA  ARG   305     -10.714 -38.078 -10.233  1.00 25.00           C
ATOM    306  CA  LEU   306     -11.268 -35.196 -12.693  1.00 25.00           C
ATOM    307  CA  GLU   307      -8.494 -36.560 -14.954  1.00 25.00           C
ATOM    308  CA  ALA   308     -10.085 -40.041 -14.846  1.00 25.00           C
ATOM    309  CA  GLU   309     -13.488 -38.542 -15.761  1.00 25.00           C
ATOM    310  CA  PHE   310     -15.497 -37.884 -12.579  1.00 25.00           C
ATOM    311  CA  GLY   311     -16.924 -39.704  -9.544  1.00 25.00           C
ATOM    312  CA  GLN   312     -18.683 -36.585  -8.216  1.00 25.00           C
ATOM    313  CA  LYS   313     -20.650 -34.901  -5.401  1.00 25.00           C
ATOM    314  CA  ARG   314     -18.415 -31.853  -5.934  1.00 25.00           C
ATOM    315  CA  ILE   315     -16.247 -30.290  -3.195  1.00 25.00           C
ATOM    316  CA  HIS   316     -17.777 -26.813  -2.619  1.00 25.00           C
ATOM    317  CA  LEU   317     -16.030 -25.429   0.470  1.00 25.00           C
ATOM    318  CA  ASN   318     -14.257 -22.316  -0.790  1.00 25.00           C
ATOM    319  CA  SER   319     -14.784 -21.949  -4.560  1.00 25.00           C
ATOM    320  CA  GLN   320     -11.747 -20.970  -6.584  1.00 25.00           C
ATOM    321  CA  PHE   321      -9.812 -21.946  -3.462  1.00 25.00           C
ATOM    322  CA  PRO   322      -6.741 -21.545  -5.679  1.00 25.00           C
ATOM    323  CA  GLY   323      -4.142 -24.276  -5.071  1.00 25.00           C
ATOM    324  CA  THR   324      -1.480 -21.689  -4.368  1.00 25.00           C
ATOM    325  CA  GLN   325      -3.589 -20.677  -1.427  1.00 25.00           C
ATOM    326  CA  ARG   326      -5.548 -21.406   1.708  1.00 25.00           C
ATOM    327  CA  LEU   327      -6.847 -21.025   5.239  1.00 25.00           C
ATOM    328  CA  PRO   328      -6.420 -24.697   6.041  1.00 25.00           C
ATOM    329  CA  ASN   329      -8.272 -24.742   9.397  1.00 25.00           C
ATOM    330  CA  THR   330     -11.429 -25.241   7.408  1.00 25.00           C
ATOM    331  CA  CYS   331     -14.720 -25.677   5.637  1.00 25.00           C
ATOM    332  CA  ASN   332     -18.194 -26.077   7.035  1.00 25.00           C
ATOM    333  CA  PHE   333     -21.973 -26.106   7.521  1.00 25.00           C
ATOM    334  CA  SER   334     -24.809 -28.215   6.105  1.00 25.00           C
ATOM    335  CA  ILE   335     -26.234 -30.800   3.761  1.00 25.00           C
ATOM    336  CA  ARG   336     -27.707 -32.988   1.102  1.00 25.00           C
ATOM    337  CA  GLY   337     -26.453 -35.219  -1.670  1.00 25.00           C
ATOM    338  CA  PRO   338     -23.758 -37.523  -0.253  1.00 25.00           C
ATOM    339  CA  ARG   339     -26.293 -38.054   2.460  1.00 25.00           C
ATOM    340  CA  LEU   340     -25.109 -36.023   5.459  1.00 25.00           C
ATOM    341  CA  GLN   341     -26.031 -39.133   7.494  1.00 25.00           C
ATOM    342  CA  GLY   342     -23.946 -41.320   5.142  1.00 25.00           C
ATOM    343  CA  HIS   343     -20.976 -38.931   5.511  1.00 25.00           C
ATOM    344  CA  VAL   344     -21.320 -39.053   9.323  1.00 25.00           C
ATOM    345  CA  VAL   345     -21.398 -42.880   9.218  1.00 25.00           C
ATOM    346  CA  LEU   346     -18.255 -42.909   7.030  1.00 25.00           C
ATOM    347  CA  ALA   347     -16.496 -40.552   9.483  1.00 25.00           C
ATOM    348  CA  GLN   348     -17.478 -42.822  12.407  1.00 25.00           C
ATOM    349  CA  CYS   349     -16.124 -45.871  10.526  1.00 25.00           C
ATOM    350  CA  ARG   350     -12.678 -44.575  11.341  1.00 25.00           C
ATOM    351  CA  VAL   351     -11.654 -42.598  14.369  1.00 25.00           C
ATOM    352  CA  LEU   352     -12.536 -39.353  12.623  1.00 25.00           C
ATOM    353  CA  MET   353     -14.732 -36.238  12.897  1.00 25.00           C
ATOM    354  CA  ALA   354     -16.365 -33.028  11.541  1.00 25.00           C
ATOM    355  CA  SER   355     -15.356 -29.537  12.568  1.00 25.00           C
ATOM    356  CA  VAL   356     -18.963 -29.076  13.580  1.00 25.00           C
ATOM    357  CA  GLY   357     -18.992 -26.485  16.376  1.00 25.00           C
ATOM    358  CA  ALA   358     -17.014 -25.475  19.446  1.00 25.00           C
ATOM    359  CA  ALA   359     -14.514 -24.069  16.986  1.00 25.00           C
ATOM    360  CA  CYS   360     -17.412 -21.724  16.091  1.00 25.00           C
ATOM    361  CA  HIS   361     -18.449 -20.663  12.613  1.00 25.00           C
ATOM    362  CA  SER   362     -19.468 -24.241  11.894  1.00 25.00           C
ATOM    363  CA  ASP   363     -23.101 -23.300  11.529  1.00 25.00           C
ATOM    364  CA  HIS   364     -23.659 -25.964  14.179  1.00 25.00           C
ATOM    365  CA  GLY   365     -24.248 -28.472  11.423  1.00 25.00           C
ATOM    366  CA  ASP   366     -22.493 -30.845   9.081  1.00 25.00           C
ATOM    367  CA  GLN   367     -20.845 -30.215   5.672  1.00 25.00           C
ATOM    368  CA  PRO   368     -21.357 -27.449   3.062  1.00 25.00           C
ATOM    369  CA  SER   369     -24.756 -25.897   2.224  1.00 25.00           C
ATOM    370  CA  PRO   370     -23.838 -22.754   4.210  1.00 25.00           C
ATOM    371  CA  VAL   371     -20.501 -22.521   2.346  1.00 25.00           C
ATOM    372  CA  LEU   372     -22.321 -22.867  -1.006  1.00 25.00           C
ATOM    373  CA  LEU   373     -24.770 -20.102   0.010  1.00 25.00           C
ATOM    374  CA  SER   374     -21.841 -17.838   0.996  1.00 25.00           C
ATOM    375  CA  TYR   375     -20.154 -18.512  -2.375  1.00 25.00           C
ATOM    376  CA  GLY   376     -22.799 -18.674  -5.069  1.00 25.00           C
ATOM    377  CA  VAL   377     -24.426 -22.000  -5.698  1.00 25.00           C
ATOM    378  CA  PRO   378     -27.922 -22.442  -4.297  1.00 25.00           C
ATOM    379  CA  PHE   379     -30.773 -24.225  -2.576  1.00 25.00           C
ATOM    380  CA  ASP   380     -31.562 -27.052  -0.115  1.00 25.00           C
ATOM    381  CA  VAL   381     -29.324 -29.441  -2.103  1.00 25.00           C
ATOM    382  CA  ALA   382     -26.492 -26.862  -2.062  1.00 25.00           C
ATOM    383  CA  ARG   383     -24.366 -29.334  -4.005  1.00 25.00           C
ATOM    384  CA  ASN   384     -23.595 -30.633  -0.494  1.00 25.00           C
ATOM    385  CA  ALA   385     -22.126 -33.278   1.852  1.00 25.00           C
ATOM    386  CA  LEU   386     -18.324 -32.672   2.069  1.00 25.00           C
ATOM    387  CA  ARG   387     -16.040 -30.333   4.020  1.00 25.00           C
ATOM    388  CA  LEU   388     -12.933 -31.371   6.008  1.00 25.00           C
ATOM    389  CA  SER   389     -11.180 -30.041   9.109  1.00 25.00           C
ATOM    390  CA  VAL   390      -8.716 -32.610  10.432  1.00 25.00           C
ATOM    391  CA  GLY   391      -6.971 -30.555  13.156  1.00 25.00           C
ATOM    392  CA  ARG   392      -5.340 -33.282  15.153  1.00 25.00           C
ATOM    393  CA  SER   393      -2.717 -34.934  12.994  1.00 25.00           C
ATOM    394  CA  THR   394      -3.493 -36.984   9.854  1.00 25.00           C
ATOM    395  CA  THR   395      -0.767 -37.654   7.256  1.00 25.00           C
ATOM    396  CA  ARG   396       0.227 -38.737   3.760  1.00 25.00           C
ATOM    397  CA  ALA   397      -0.444 -42.480   3.301  1.00 25.00           C
ATOM    398  CA  GLU   398      -2.944 -42.412   6.201  1.00 25.00           C
ATOM    399  CA  VAL   399      -4.706 -39.389   4.643  1.00 25.00           C
ATOM    400  CA  ASP   400      -4.894 -41.203   1.276  1.00 25.00           C
ATOM    401  CA  LEU   401      -6.368 -44.293   2.994  1.00 25.00           C
ATOM    402  CA  VAL   402      -8.969 -42.102   4.756  1.00 25.00           C
ATOM    403  CA  VAL   403      -9.893 -40.470   1.417  1.00 25.00           C
ATOM    404  CA  GLN   404     -10.271 -43.924  -0.194  1.00 25.00           C
ATOM    405  CA  ASP   405     -12.517 -45.053   2.696  1.00 25.00           C
ATOM    406  CA  LEU   406     -14.659 -41.904   2.294  1.00 25.00           C
ATOM    407  CA  LYS   407     -14.970 -42.565  -1.465  1.00 25.00           C
ATOM    408  CA  GLN   408     -16.020 -46.182  -0.767  1.00 25.00           C
ATOM    409  CA  ALA   409     -18.645 -44.960   1.740  1.00 25.00           C
ATOM    410  CA  VAL   410     -19.984 -42.465  -0.838  1.00 25.00           C
ATOM    411  CA  ALA   411     -20.195 -45.248  -3.459  1.00 25.00           C
ATOM    412  CA  GLN   412     -22.083 -47.474  -0.979  1.00 25.00           C
ATOM    413  CA  LEU   413     -24.517 -44.614  -0.228  1.00 25.00           C
ATOM    414  CA  GLU   414     -25.083 -44.079  -3.977  1.00 25.00           C
ATOM    415  CA  ASP   415     -25.754 -47.821  -4.436  1.00 25.00           C
ATOM    416  CA  GLN   416     -26.365 -50.215  -1.558  1.00 25.00           C
TER
END
