
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  136 (  136),  selected  136 , name T0339TS393_5-D1
# Molecule2: number of CA atoms  136 ( 1077),  selected  136 , name T0339_D1.pdb
# PARAMETERS: T0339TS393_5-D1.T0339_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   121       296 - 416         5.00     6.69
  LCS_AVERAGE:     82.71

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33       384 - 416         1.97     7.43
  LCS_AVERAGE:     13.24

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       394 - 416         0.99     9.61
  LCS_AVERAGE:      8.20

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  136
LCS_GDT     E       1     E       1      6    8   21     0    6    7    8    9   15   18   24   36   41   44   50   55   64   69   76   82   88   93   99 
LCS_GDT     R       2     R       2      6    8   21     3    6    7    8    9   10   13   15   18   25   34   39   46   48   57   67   73   80   85   90 
LCS_GDT     K       3     K       3      6    8   21     3    6    7    8   10   11   18   32   38   44   50   55   63   66   77   82   89   99  111  121 
LCS_GDT     V       4     V       4      6    8   21     3    6    7    8   10   11   16   19   26   41   44   50   55   64   69   76   83   88   98  107 
LCS_GDT     Y       5     Y       5      6    8   27     4    6    7    8    9   11   14   19   31   37   49   54   60   67   76   85   96  113  119  124 
LCS_GDT     M       6     M       6      6    8   27     4    6    7   11   12   19   25   37   41   45   50   61   84   87   92  108  117  123  127  128 
LCS_GDT     D       7     D       7      4    8   27     4    4    4    6   12   20   28   36   41   46   66   73   84   92  105  112  121  126  127  128 
LCS_GDT     Y       8     Y       8      4    8   27     4    4    4    6    7    8   15   20   25   31   36   41   52   56   63   69   74  101  101  124 
LCS_GDT     E     289     E     289     21   22   48    12   21   21   21   22   22   26   34   39   52   61   77   95  105  114  119  122  126  127  128 
LCS_GDT     A     290     A     290     21   22   48    12   21   21   21   22   22   26   34   39   52   61   74   87  105  114  118  122  126  127  128 
LCS_GDT     Y     291     Y     291     21   22   48    12   21   21   21   22   22   26   33   38   49   60   74   87  105  114  118  122  126  127  128 
LCS_GDT     E     292     E     292     21   22   67    12   21   21   21   22   22   26   34   45   54   75   90  101  111  116  119  123  126  127  128 
LCS_GDT     A     293     A     293     21   22   67    13   21   21   21   22   23   30   45   50   58   78   90  103  111  116  119  123  126  127  128 
LCS_GDT     H     294     H     294     21   22   67    13   21   21   21   22   22   26   33   45   54   64   82   99  109  115  119  123  126  127  128 
LCS_GDT     M     295     M     295     21   22  120    13   21   21   21   22   22   26   33   45   54   73   90  101  111  116  119  123  126  127  128 
LCS_GDT     R     296     R     296     21   22  121    13   21   21   21   22   32   40   48   63   76   86   97  105  111  116  119  123  126  127  128 
LCS_GDT     D     297     D     297     21   22  121    13   21   21   21   22   32   40   47   60   74   85   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     298     V     298     21   22  121    13   21   21   21   22   22   29   40   50   63   83   95  103  111  116  119  123  126  127  128 
LCS_GDT     R     299     R     299     21   22  121    13   21   21   21   22   27   38   48   59   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     D     300     D     300     21   22  121    13   21   21   21   23   32   42   54   64   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Y     301     Y     301     21   22  121    13   21   21   21   23   32   41   53   64   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     302     L     302     21   22  121    13   21   21   21   22   25   33   42   55   70   85   97  104  111  116  119  123  126  127  128 
LCS_GDT     E     303     E     303     21   22  121    13   21   21   21   22   22   28   43   58   71   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     E     304     E     304     21   22  121    13   21   21   21   22   22   39   49   64   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     R     305     R     305     21   22  121    13   21   21   21   22   23   29   43   61   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     306     L     306     21   22  121    13   21   21   21   22   22   25   33   37   40   58   82  101  111  116  119  123  126  127  128 
LCS_GDT     E     307     E     307     21   22  121    12   21   21   21   22   22   24   27   33   40   40   74   92  110  115  119  123  126  127  128 
LCS_GDT     A     308     A     308     21   22  121    13   21   21   21   22   22   26   33   46   66   86   97  105  111  116  119  123  126  127  128 
LCS_GDT     E     309     E     309     21   22  121    12   21   21   21   22   22   26   33   37   47   66   89  101  111  116  119  123  126  127  128 
LCS_GDT     F     310     F     310      4   22  121     3    3    5    8   17   19   26   36   60   73   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     G     311     G     311      4    5  121     3    4   11   17   27   36   50   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     312     Q     312      4    5  121     3    4    9   17   27   35   43   55   67   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     K     313     K     313      3    6  121     0    3    3    5    9   22   35   53   67   74   83   95  105  111  116  119  123  126  127  128 
LCS_GDT     R     314     R     314      4    6  121     0   19   23   25   28   37   50   58   68   77   85   95  105  111  116  119  123  126  127  128 
LCS_GDT     I     315     I     315      4    6  121     3    3   23   25   28   36   50   58   68   77   85   95  105  111  116  119  123  126  127  128 
LCS_GDT     H     316     H     316      4    6  121     3    6   17   26   39   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     317     L     317      4    6  121     3    5    6    9   21   34   50   58   67   77   85   97  105  111  116  119  123  126  127  128 
LCS_GDT     N     318     N     318      4    6  121     3    5    5    6   15   26   45   61   68   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     S     319     S     319      4   14  121     3   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     320     Q     320      4   17  121     5   10   19   29   40   47   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     F     321     F     321      3   17  121     3    8   16   21   31   43   55   60   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     P     322     P     322      3   17  121     3    3    9   19   34   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     G     323     G     323      3   17  121     3    3   14   20   27   36   49   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     T     324     T     324      4   17  121     3    4    5   10   15   28   36   48   60   75   85   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     325     Q     325      8   17  121     5    9   18   29   38   47   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     R     326     R     326      8   17  121     5   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     327     L     327      8   17  121     5   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     P     328     P     328      8   17  121     3    8   16   21   27   48   57   61   69   77   86   97  105  111  116  119  123  126  127  128 
LCS_GDT     N     329     N     329      8   17  121     4    8   16   21   39   48   57   61   69   77   85   97  105  111  116  119  123  126  127  128 
LCS_GDT     T     330     T     330      8   17  121     4    8   16   21   39   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     C     331     C     331      8   17  121     4    8   14   21   39   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     N     332     N     332      8   17  121     3    8   16   21   39   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     F     333     F     333      5   17  121     3    5   13   21   23   30   42   56   63   71   82   93  105  111  116  119  123  126  127  128 
LCS_GDT     S     334     S     334      5   17  121     3    8   16   21   28   36   48   58   68   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     I     335     I     335      5   17  121     3    8   14   20   27   36   49   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     R     336     R     336      5   17  121     3    8   14   20   28   36   50   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     G     337     G     337      5    9  121     3   10   22   25   39   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     P     338     P     338      3    6  121     3    3    6    7    8    8   11   16   33   54   79   85   91  105  113  117  123  126  127  128 
LCS_GDT     R     339     R     339      3    4  121     3    3    6    9   26   36   52   60   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     340     L     340      3    4  121     3    6    8   14   23   35   50   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     341     Q     341      9   10  121     9   21   23   25   27   36   50   59   69   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     G     342     G     342      9   10  121     9    9    9    9   10   22   36   44   53   68   74   92  101  111  116  119  123  126  127  128 
LCS_GDT     H     343     H     343      9   10  121     9    9    9    9   10   12   31   50   60   66   84   96  105  111  116  119  123  126  127  128 
LCS_GDT     V     344     V     344      9   10  121     9    9    9    9   17   27   47   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     345     V     345      9   10  121     9    9    9    9   21   31   46   59   69   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     346     L     346      9   10  121     9    9   23   25   28   36   46   58   66   74   86   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     347     A     347      9   10  121     9    9    9    9   20   27   39   53   64   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     348     Q     348      9   10  121     9    9    9    9   12   34   47   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     C     349     C     349      9   10  121     9    9    9    9   10   15   46   59   69   76   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     R     350     R     350      5   10  121     5   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     351     V     351      5    7  121     3    9   13   23   34   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     352     L     352      5    7  121     3    4   10   21   33   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     M     353     M     353      5    7  121     3   10   18   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     354     A     354      5    7  121     3    9   14   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     S     355     S     355      5    7  121     3    7   15   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     356     V     356      3    6  121     2    3    6    9   16   33   47   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     G     357     G     357      3    6  121     0    3    4    7    8   25   40   58   64   76   82   95  105  111  116  119  123  126  127  128 
LCS_GDT     A     358     A     358      3    6  121     3    3    6   16   23   36   50   60   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     359     A     359      3    6  121     3    4   10   17   27   36   50   60   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     C     360     C     360      3    6  121     3    7   11   16   22   32   42   52   64   76   87   97  104  110  114  119  123  126  127  128 
LCS_GDT     H     361     H     361      3    6  121     3    3    8   11   18   24   31   39   53   64   79   90  100  107  113  119  123  126  127  128 
LCS_GDT     S     362     S     362      4    6  121     3    4    4    4    6    6    9   12   26   35   45   53   61   71   91  104  111  119  123  125 
LCS_GDT     D     363     D     363      4    6  121     3    4    5    5    6    7   12   26   34   49   59   87   95  107  114  119  123  126  127  128 
LCS_GDT     H     364     H     364      4    6  121     3    6    8   11   18   25   34   48   60   76   87   95  103  110  116  119  123  126  127  128 
LCS_GDT     G     365     G     365      4    6  121     3    4    5    5    7    9   12   32   38   46   55   71   84   94  101  108  114  120  123  128 
LCS_GDT     D     366     D     366      4    6  121     3    4    5    6   14   22   31   39   47   62   76   91  100  107  113  119  123  125  127  128 
LCS_GDT     Q     367     Q     367      4    6  121     3    4    6   10   15   22   32   45   61   76   87   97  104  110  116  119  123  126  127  128 
LCS_GDT     P     368     P     368      4   15  121     3    3    4    7   12   16   25   36   51   68   81   93  103  110  116  119  123  126  127  128 
LCS_GDT     S     369     S     369     10   15  121     7    9   16   21   26   33   41   49   66   77   84   97  105  111  116  119  123  126  127  128 
LCS_GDT     P     370     P     370     10   15  121     7    9   16   21   26   36   45   58   68   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     371     V     371     10   15  121     7    9   16   21   40   47   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     372     L     372     10   15  121     7    9   16   21   37   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     373     L     373     10   15  121     7    9   16   21   32   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     S     374     S     374     10   15  121     7    9   12   29   40   47   56   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Y     375     Y     375     10   15  121     7   10   19   30   40   47   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     G     376     G     376     10   15  121     5   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     377     V     377     10   15  121     3    9    9   20   26   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     P     378     P     378     10   15  121     3    9   16   21   31   43   57   60   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     F     379     F     379      6   15  121     4    7   12   26   39   44   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     D     380     D     380      6   15  121     4    8   15   21   27   36   50   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     381     V     381      6   15  121     4    8   16   21   28   40   50   59   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     382     A     382      6   15  121     4    7   11   26   39   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     R     383     R     383      4    7  121     3    4    5    7   11   22   45   58   65   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     N     384     N     384      4   33  121     3    4    5   11   20   26   47   61   67   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     385     A     385      7   33  121     3    6   18   30   40   47   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     386     L     386      7   33  121     3   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     R     387     R     387      7   33  121     3   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     388     L     388      7   33  121     5   10   19   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     S     389     S     389      7   33  121     3    7   17   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     390     V     390      7   33  121     3    6   12   20   34   48   56   61   69   77   85   97  105  111  116  119  123  126  127  128 
LCS_GDT     G     391     G     391      7   33  121     3    6   12   21   34   47   54   61   68   77   85   95  105  111  116  119  123  126  127  128 
LCS_GDT     R     392     R     392      5   33  121     3    4    9   14   23   31   43   55   63   72   83   95  105  111  116  119  123  126  127  128 
LCS_GDT     S     393     S     393      6   33  121     5    7   18   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     T     394     T     394     23   33  121     3    7   17   29   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     T     395     T     395     23   33  121     3   10   21   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     R     396     R     396     23   33  121    12   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     397     A     397     23   33  121    17   21   23   26   40   47   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     E     398     E     398     23   33  121    17   21   23   25   29   43   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     399     V     399     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     D     400     D     400     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     401     L     401     23   33  121    17   21   23   27   40   47   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     402     V     402     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     403     V     403     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     404     Q     404     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     D     405     D     405     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     L     406     L     406     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     K     407     K     407     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     408     Q     408     23   33  121    17   21   23   30   40   48   57   61   68   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     409     A     409     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     V     410     V     410     23   33  121    17   21   23   30   40   48   57   61   69   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     A     411     A     411     23   33  121    17   21   23   27   40   48   57   61   68   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     Q     412     Q     412     23   33  121    17   21   23   30   40   48   57   61   68   77   86   96  105  111  116  119  123  126  127  128 
LCS_GDT     L     413     L     413     23   33  121    17   21   23   30   40   48   57   61   68   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     E     414     E     414     23   33  121    12   21   23   26   40   48   57   61   68   77   87   97  105  111  116  119  123  126  127  128 
LCS_GDT     D     415     D     415     23   33  121    12   21   23   27   40   48   57   61   68   77   86   96  105  111  116  119  123  126  127  128 
LCS_GDT     Q     416     Q     416     23   33  121     3   18   23   30   40   48   57   61   68   77   86   96  105  111  116  119  123  126  127  128 
LCS_AVERAGE  LCS_A:  34.72  (   8.20   13.24   82.71 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     21     23     30     40     48     57     61     69     77     87     97    105    111    116    119    123    126    127    128 
GDT PERCENT_CA  12.50  15.44  16.91  22.06  29.41  35.29  41.91  44.85  50.74  56.62  63.97  71.32  77.21  81.62  85.29  87.50  90.44  92.65  93.38  94.12
GDT RMS_LOCAL    0.29   0.41   0.56   1.43   1.71   2.17   2.40   2.54   4.89   3.32   3.85   4.08   4.27   4.49   4.69   4.81   4.96   5.15   5.19   5.27
GDT RMS_ALL_CA  11.82  11.56  11.47   7.25   7.17   7.10   6.98   7.01   6.71   6.76   6.73   6.65   6.65   6.64   6.63   6.61   6.62   6.57   6.56   6.54

#      Molecule1      Molecule2       DISTANCE
LGA    E       1      E       1         22.027
LGA    R       2      R       2         22.334
LGA    K       3      K       3         16.212
LGA    V       4      V       4         16.739
LGA    Y       5      Y       5         13.422
LGA    M       6      M       6         10.419
LGA    D       7      D       7          9.128
LGA    Y       8      Y       8         13.279
LGA    E     289      E     289          9.478
LGA    A     290      A     290         10.065
LGA    Y     291      Y     291         10.021
LGA    E     292      E     292          8.766
LGA    A     293      A     293          8.829
LGA    H     294      H     294          9.655
LGA    M     295      M     295          8.958
LGA    R     296      R     296          7.841
LGA    D     297      D     297          8.427
LGA    V     298      V     298          8.788
LGA    R     299      R     299          8.300
LGA    D     300      D     300          8.024
LGA    Y     301      Y     301          8.338
LGA    L     302      L     302          8.610
LGA    E     303      E     303          8.133
LGA    E     304      E     304          7.968
LGA    R     305      R     305          8.313
LGA    L     306      L     306          8.963
LGA    E     307      E     307          8.358
LGA    A     308      A     308          7.994
LGA    E     309      E     309          9.037
LGA    F     310      F     310          6.122
LGA    G     311      G     311          6.619
LGA    Q     312      Q     312          8.584
LGA    K     313      K     313          7.779
LGA    R     314      R     314          4.998
LGA    I     315      I     315          4.870
LGA    H     316      H     316          2.417
LGA    L     317      L     317          4.839
LGA    N     318      N     318          3.980
LGA    S     319      S     319          2.140
LGA    Q     320      Q     320          3.599
LGA    F     321      F     321          5.099
LGA    P     322      P     322          3.340
LGA    G     323      G     323          5.814
LGA    T     324      T     324          7.486
LGA    Q     325      Q     325          3.911
LGA    R     326      R     326          2.828
LGA    L     327      L     327          1.952
LGA    P     328      P     328          3.451
LGA    N     329      N     329          3.077
LGA    T     330      T     330          2.858
LGA    C     331      C     331          2.749
LGA    N     332      N     332          3.181
LGA    F     333      F     333          6.988
LGA    S     334      S     334          6.270
LGA    I     335      I     335          5.668
LGA    R     336      R     336          5.834
LGA    G     337      G     337          3.423
LGA    P     338      P     338          8.233
LGA    R     339      R     339          4.698
LGA    L     340      L     340          5.613
LGA    Q     341      Q     341          6.520
LGA    G     342      G     342          7.745
LGA    H     343      H     343          6.011
LGA    V     344      V     344          5.938
LGA    V     345      V     345          6.881
LGA    L     346      L     346          5.590
LGA    A     347      A     347          5.999
LGA    Q     348      Q     348          7.548
LGA    C     349      C     349          6.158
LGA    R     350      R     350          2.066
LGA    V     351      V     351          3.184
LGA    L     352      L     352          3.040
LGA    M     353      M     353          1.054
LGA    A     354      A     354          1.379
LGA    S     355      S     355          1.456
LGA    V     356      V     356          5.686
LGA    G     357      G     357          6.899
LGA    A     358      A     358          4.756
LGA    A     359      A     359          5.322
LGA    C     360      C     360          8.949
LGA    H     361      H     361         10.116
LGA    S     362      S     362         12.896
LGA    D     363      D     363          8.941
LGA    H     364      H     364          9.224
LGA    G     365      G     365         13.982
LGA    D     366      D     366         10.488
LGA    Q     367      Q     367          7.761
LGA    P     368      P     368          8.379
LGA    S     369      S     369          5.286
LGA    P     370      P     370          4.911
LGA    V     371      V     371          3.008
LGA    L     372      L     372          2.400
LGA    L     373      L     373          2.541
LGA    S     374      S     374          3.760
LGA    Y     375      Y     375          3.503
LGA    G     376      G     376          3.067
LGA    V     377      V     377          3.959
LGA    P     378      P     378          4.353
LGA    F     379      F     379          3.681
LGA    D     380      D     380          6.252
LGA    V     381      V     381          5.766
LGA    A     382      A     382          3.398
LGA    R     383      R     383          5.114
LGA    N     384      N     384          3.991
LGA    A     385      A     385          2.316
LGA    L     386      L     386          2.026
LGA    R     387      R     387          2.314
LGA    L     388      L     388          1.106
LGA    S     389      S     389          1.396
LGA    V     390      V     390          3.490
LGA    G     391      G     391          3.936
LGA    R     392      R     392          5.331
LGA    S     393      S     393          1.180
LGA    T     394      T     394          1.750
LGA    T     395      T     395          0.114
LGA    R     396      R     396          1.993
LGA    A     397      A     397          2.409
LGA    E     398      E     398          3.390
LGA    V     399      V     399          2.373
LGA    D     400      D     400          1.349
LGA    L     401      L     401          2.746
LGA    V     402      V     402          2.701
LGA    V     403      V     403          1.627
LGA    Q     404      Q     404          1.816
LGA    D     405      D     405          2.559
LGA    L     406      L     406          2.012
LGA    K     407      K     407          1.446
LGA    Q     408      Q     408          2.282
LGA    A     409      A     409          2.155
LGA    V     410      V     410          1.648
LGA    A     411      A     411          1.999
LGA    Q     412      Q     412          2.472
LGA    L     413      L     413          1.878
LGA    E     414      E     414          1.584
LGA    D     415      D     415          1.831
LGA    Q     416      Q     416          2.740

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  136  136    4.0     61    2.54    42.463    36.484     2.311

LGA_LOCAL      RMSD =  2.540  Number of atoms =   61  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.886  Number of atoms =  136 
Std_ALL_ATOMS  RMSD =  6.411  (standard rmsd on all 136 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.568364 * X  +  -0.549869 * Y  +   0.612050 * Z  +  -9.401764
  Y_new =  -0.619524 * X  +  -0.203509 * Y  +  -0.758139 * Z  + -14.350903
  Z_new =   0.541435 * X  +  -0.810079 * Y  +  -0.224990 * Z  +  13.321877 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.841707    1.299886  [ DEG:  -105.5220     74.4780 ]
  Theta =  -0.572143   -2.569450  [ DEG:   -32.7814   -147.2186 ]
  Phi   =  -2.313154    0.828439  [ DEG:  -132.5339     47.4661 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0339TS393_5-D1                               
REMARK     2: T0339_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0339TS393_5-D1.T0339_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  136  136   4.0   61   2.54  36.484     6.41
REMARK  ---------------------------------------------------------- 
MOLECULE T0339TS393_5-D1
PFRMAT TS
TARGET T0339
MODEL 5
PARENT N/A
ATOM      1  CA  GLU     1     -25.835 -38.447  24.667  1.00 25.00           C
ATOM      2  CA  ARG     2     -27.089 -36.062  22.007  1.00 25.00           C
ATOM      3  CA  LYS     3     -23.713 -35.745  20.319  1.00 25.00           C
ATOM      4  CA  VAL     4     -22.654 -32.399  18.929  1.00 25.00           C
ATOM      5  CA  TYR     5     -21.767 -30.565  15.675  1.00 25.00           C
ATOM      6  CA  MET     6     -18.453 -28.613  15.361  1.00 25.00           C
ATOM      7  CA  ASP     7     -19.294 -25.082  14.101  1.00 25.00           C
ATOM      8  CA  TYR     8     -21.476 -23.170  16.606  1.00 25.00           C
ATOM    289  CA  GLU   289      -0.482 -27.291   9.026  1.00 25.00           C
ATOM    290  CA  ALA   290      -0.929 -31.030   9.724  1.00 25.00           C
ATOM    291  CA  TYR   291      -4.688 -30.731   9.054  1.00 25.00           C
ATOM    292  CA  GLU   292      -3.980 -28.913   5.759  1.00 25.00           C
ATOM    293  CA  ALA   293      -1.512 -31.659   4.744  1.00 25.00           C
ATOM    294  CA  HIS   294      -4.121 -34.341   5.561  1.00 25.00           C
ATOM    295  CA  MET   295      -6.728 -32.479   3.463  1.00 25.00           C
ATOM    296  CA  ARG   296      -4.258 -32.260   0.544  1.00 25.00           C
ATOM    297  CA  ASP   297      -3.553 -36.015   0.828  1.00 25.00           C
ATOM    298  CA  VAL   298      -7.312 -36.745   0.818  1.00 25.00           C
ATOM    299  CA  ARG   299      -7.756 -34.554  -2.292  1.00 25.00           C
ATOM    300  CA  ASP   300      -4.887 -36.401  -4.032  1.00 25.00           C
ATOM    301  CA  TYR   301      -6.484 -39.767  -3.148  1.00 25.00           C
ATOM    302  CA  LEU   302      -9.842 -38.568  -4.545  1.00 25.00           C
ATOM    303  CA  GLU   303      -8.123 -37.434  -7.773  1.00 25.00           C
ATOM    304  CA  GLU   304      -6.406 -40.844  -8.085  1.00 25.00           C
ATOM    305  CA  ARG   305      -9.766 -42.609  -7.578  1.00 25.00           C
ATOM    306  CA  LEU   306     -11.361 -40.404 -10.272  1.00 25.00           C
ATOM    307  CA  GLU   307      -8.491 -41.220 -12.673  1.00 25.00           C
ATOM    308  CA  ALA   308      -8.938 -44.958 -11.975  1.00 25.00           C
ATOM    309  CA  GLU   309     -12.697 -44.660 -12.646  1.00 25.00           C
ATOM    310  CA  PHE   310     -14.661 -44.821  -9.429  1.00 25.00           C
ATOM    311  CA  GLY   311     -16.680 -42.539  -7.124  1.00 25.00           C
ATOM    312  CA  GLN   312     -18.438 -39.165  -6.825  1.00 25.00           C
ATOM    313  CA  LYS   313     -17.978 -36.469  -4.161  1.00 25.00           C
ATOM    314  CA  ARG   314     -16.190 -33.087  -4.066  1.00 25.00           C
ATOM    315  CA  ILE   315     -14.404 -30.355  -2.089  1.00 25.00           C
ATOM    316  CA  HIS   316     -16.702 -27.935  -3.962  1.00 25.00           C
ATOM    317  CA  LEU   317     -16.702 -24.594  -2.065  1.00 25.00           C
ATOM    318  CA  ASN   318     -14.339 -21.614  -1.831  1.00 25.00           C
ATOM    319  CA  SER   319     -11.742 -24.385  -1.834  1.00 25.00           C
ATOM    320  CA  GLN   320     -10.992 -26.016  -5.211  1.00 25.00           C
ATOM    321  CA  PHE   321     -13.578 -23.850  -6.912  1.00 25.00           C
ATOM    322  CA  PRO   322     -10.608 -21.543  -7.465  1.00 25.00           C
ATOM    323  CA  GLY   323      -6.880 -22.217  -7.082  1.00 25.00           C
ATOM    324  CA  THR   324      -3.970 -22.391  -4.617  1.00 25.00           C
ATOM    325  CA  GLN   325      -5.563 -19.776  -2.404  1.00 25.00           C
ATOM    326  CA  ARG   326      -7.395 -21.229   0.537  1.00 25.00           C
ATOM    327  CA  LEU   327      -7.064 -20.848   4.272  1.00 25.00           C
ATOM    328  CA  PRO   328      -6.515 -24.572   4.623  1.00 25.00           C
ATOM    329  CA  ASN   329      -8.083 -25.145   8.018  1.00 25.00           C
ATOM    330  CA  THR   330     -11.557 -25.285   6.407  1.00 25.00           C
ATOM    331  CA  CYS   331     -13.162 -27.468   3.794  1.00 25.00           C
ATOM    332  CA  ASN   332     -16.814 -27.044   4.590  1.00 25.00           C
ATOM    333  CA  PHE   333     -19.891 -29.072   5.374  1.00 25.00           C
ATOM    334  CA  SER   334     -22.306 -31.453   3.640  1.00 25.00           C
ATOM    335  CA  ILE   335     -22.654 -33.995   0.828  1.00 25.00           C
ATOM    336  CA  ARG   336     -25.179 -35.786  -1.323  1.00 25.00           C
ATOM    337  CA  GLY   337     -23.424 -39.065  -1.767  1.00 25.00           C
ATOM    338  CA  PRO   338     -21.747 -39.263   1.607  1.00 25.00           C
ATOM    339  CA  ARG   339     -25.126 -38.312   3.109  1.00 25.00           C
ATOM    340  CA  LEU   340     -23.230 -36.311   5.652  1.00 25.00           C
ATOM    341  CA  GLN   341     -25.005 -38.310   8.393  1.00 25.00           C
ATOM    342  CA  GLY   342     -23.414 -41.544   7.099  1.00 25.00           C
ATOM    343  CA  HIS   343     -19.965 -39.882   7.111  1.00 25.00           C
ATOM    344  CA  VAL   344     -20.528 -38.684  10.706  1.00 25.00           C
ATOM    345  CA  VAL   345     -21.556 -42.222  11.750  1.00 25.00           C
ATOM    346  CA  LEU   346     -18.409 -43.651  10.097  1.00 25.00           C
ATOM    347  CA  ALA   347     -16.249 -41.077  11.932  1.00 25.00           C
ATOM    348  CA  GLN   348     -17.919 -42.003  15.251  1.00 25.00           C
ATOM    349  CA  CYS   349     -17.275 -45.715  14.568  1.00 25.00           C
ATOM    350  CA  ARG   350     -13.780 -45.326  13.096  1.00 25.00           C
ATOM    351  CA  VAL   351     -12.227 -42.392  14.882  1.00 25.00           C
ATOM    352  CA  LEU   352     -11.938 -38.858  13.635  1.00 25.00           C
ATOM    353  CA  MET   353     -14.177 -35.821  13.285  1.00 25.00           C
ATOM    354  CA  ALA   354     -15.789 -32.637  11.917  1.00 25.00           C
ATOM    355  CA  SER   355     -19.359 -31.382  11.225  1.00 25.00           C
ATOM    356  CA  VAL   356     -19.086 -28.607  13.770  1.00 25.00           C
ATOM    357  CA  GLY   357     -18.726 -26.035  16.511  1.00 25.00           C
ATOM    358  CA  ALA   358     -16.083 -23.357  15.906  1.00 25.00           C
ATOM    359  CA  ALA   359     -18.869 -20.814  16.268  1.00 25.00           C
ATOM    360  CA  CYS   360     -17.969 -18.971  13.094  1.00 25.00           C
ATOM    361  CA  HIS   361     -17.384 -22.242  11.180  1.00 25.00           C
ATOM    362  CA  SER   362     -16.909 -25.833  10.097  1.00 25.00           C
ATOM    363  CA  ASP   363     -20.671 -26.054   9.707  1.00 25.00           C
ATOM    364  CA  HIS   364     -22.948 -24.703  12.389  1.00 25.00           C
ATOM    365  CA  GLY   365     -24.917 -21.456  12.502  1.00 25.00           C
ATOM    366  CA  ASP   366     -27.017 -22.903   9.723  1.00 25.00           C
ATOM    367  CA  GLN   367     -24.168 -23.257   7.283  1.00 25.00           C
ATOM    368  CA  PRO   368     -24.013 -19.423   7.399  1.00 25.00           C
ATOM    369  CA  SER   369     -27.010 -19.556   5.019  1.00 25.00           C
ATOM    370  CA  PRO   370     -25.697 -16.478   3.155  1.00 25.00           C
ATOM    371  CA  VAL   371     -22.243 -18.103   2.853  1.00 25.00           C
ATOM    372  CA  LEU   372     -23.842 -21.306   1.492  1.00 25.00           C
ATOM    373  CA  LEU   373     -25.828 -19.257  -1.063  1.00 25.00           C
ATOM    374  CA  SER   374     -22.626 -17.455  -2.144  1.00 25.00           C
ATOM    375  CA  TYR   375     -20.839 -20.819  -2.544  1.00 25.00           C
ATOM    376  CA  GLY   376     -22.995 -21.114  -5.705  1.00 25.00           C
ATOM    377  CA  VAL   377     -25.634 -23.619  -4.683  1.00 25.00           C
ATOM    378  CA  PRO   378     -28.648 -25.505  -3.473  1.00 25.00           C
ATOM    379  CA  PHE   379     -28.968 -24.819   0.242  1.00 25.00           C
ATOM    380  CA  ASP   380     -30.756 -28.143   0.892  1.00 25.00           C
ATOM    381  CA  VAL   381     -27.481 -30.044   0.318  1.00 25.00           C
ATOM    382  CA  ALA   382     -25.670 -27.708   2.753  1.00 25.00           C
ATOM    383  CA  ARG   383     -22.229 -26.808   1.479  1.00 25.00           C
ATOM    384  CA  ASN   384     -21.704 -29.437  -1.209  1.00 25.00           C
ATOM    385  CA  ALA   385     -18.653 -30.648   0.747  1.00 25.00           C
ATOM    386  CA  LEU   386     -17.529 -33.076   3.487  1.00 25.00           C
ATOM    387  CA  ARG   387     -15.368 -31.589   6.314  1.00 25.00           C
ATOM    388  CA  LEU   388     -11.652 -31.981   7.038  1.00 25.00           C
ATOM    389  CA  SER   389     -10.605 -29.536   9.796  1.00 25.00           C
ATOM    390  CA  VAL   390      -8.433 -30.822  12.639  1.00 25.00           C
ATOM    391  CA  GLY   391      -6.612 -29.528  15.710  1.00 25.00           C
ATOM    392  CA  ARG   392      -4.314 -32.588  15.941  1.00 25.00           C
ATOM    393  CA  SER   393      -1.061 -34.037  14.751  1.00 25.00           C
ATOM    394  CA  THR   394      -2.700 -35.971  11.951  1.00 25.00           C
ATOM    395  CA  THR   395       0.132 -36.679   9.473  1.00 25.00           C
ATOM    396  CA  ARG   396       1.576 -38.612   6.505  1.00 25.00           C
ATOM    397  CA  ALA   397       1.185 -42.364   5.849  1.00 25.00           C
ATOM    398  CA  GLU   398      -1.370 -42.620   8.690  1.00 25.00           C
ATOM    399  CA  VAL   399      -3.313 -39.655   7.242  1.00 25.00           C
ATOM    400  CA  ASP   400      -3.305 -41.306   3.786  1.00 25.00           C
ATOM    401  CA  LEU   401      -4.586 -44.574   5.317  1.00 25.00           C
ATOM    402  CA  VAL   402      -7.371 -42.665   7.123  1.00 25.00           C
ATOM    403  CA  VAL   403      -8.345 -40.936   3.848  1.00 25.00           C
ATOM    404  CA  GLN   404      -8.443 -44.323   2.062  1.00 25.00           C
ATOM    405  CA  ASP   405     -10.658 -45.752   4.840  1.00 25.00           C
ATOM    406  CA  LEU   406     -13.012 -42.745   4.543  1.00 25.00           C
ATOM    407  CA  LYS   407     -13.201 -43.237   0.750  1.00 25.00           C
ATOM    408  CA  GLN   408     -14.003 -46.948   1.246  1.00 25.00           C
ATOM    409  CA  ALA   409     -16.757 -46.045   3.750  1.00 25.00           C
ATOM    410  CA  VAL   410     -18.220 -43.524   1.266  1.00 25.00           C
ATOM    411  CA  ALA   411     -18.180 -46.180  -1.492  1.00 25.00           C
ATOM    412  CA  GLN   412     -19.952 -48.655   0.831  1.00 25.00           C
ATOM    413  CA  LEU   413     -22.599 -46.015   1.665  1.00 25.00           C
ATOM    414  CA  GLU   414     -23.129 -45.333  -2.066  1.00 25.00           C
ATOM    415  CA  ASP   415     -23.520 -49.086  -2.722  1.00 25.00           C
ATOM    416  CA  GLN   416     -25.254 -50.669   0.299  1.00 25.00           C
TER
END
