
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  148 , name T0341TS168_2-D1
# Molecule2: number of CA atoms  148 ( 1158),  selected  148 , name T0341_D1.pdb
# PARAMETERS: T0341TS168_2-D1.T0341_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148         7 - 259         3.79     3.79
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        47 - 187         1.99     7.37
  LCS_AVERAGE:     14.91

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        53 - 66          0.92    11.12
  LCS_AVERAGE:      5.45

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     L       7     L       7      5    8  148     4    5    9   11   14   20   40   59   83  104  117  139  145  148  148  148  148  148  148  148 
LCS_GDT     K       8     K       8      5    8  148     4    6    9   11   14   20   38   57   80   93  130  139  145  148  148  148  148  148  148  148 
LCS_GDT     A       9     A       9      5    8  148     4    6   10   23   39   68   93  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V      10     V      10      5    8  148     4    6   21   35   49   70   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      11     L      11      5    8  148     3   12   21   35   49   70   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V      12     V      12      4    8  148     3    8   15   22   33   47   63   88  105  123  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D      13     D      13      3    8  148     1   12   20   35   49   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      14     L      14      3    8  148     5   12   21   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     N      15     N      15      3    5  148     3    5   18   29   39   68   85  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     G      16     G      16      3    5  148     3    5   13   28   39   69   90  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T      17     T      17      3    5  148     3    4   12   28   41   62   80   99  113  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      18     L      18      4    5  148     3    6   11   17   33   44   58   74   90  106  120  132  144  148  148  148  148  148  148  148 
LCS_GDT     H      19     H      19      4    5  148     3    7   15   26   41   59   74   93  109  125  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     I      20     I      20      4    5  148     3    4    6   24   33   51   68   89  104  118  132  140  145  148  148  148  148  148  148  148 
LCS_GDT     E      21     E      21      4    6  148     3    8   21   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D      22     D      22      3    7  148     3   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A      23     A      23      3   14  148     5   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A      24     A      24      3   14  148     3    8   21   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V      25     V      25      4   14  148     3    6   17   30   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     P      26     P      26      4   17  148     3    5   20   29   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     G      27     G      27     13   20  148     9   12   15   18   27   46   64   82  100  113  125  137  145  148  148  148  148  148  148  148 
LCS_GDT     A      28     A      28     13   20  148     9   12   15   19   33   55   68   98  113  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     Q      29     Q      29     13   20  148     9   12   21   35   49   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E      30     E      30     13   20  148     9   12   15   24   42   55   73   97  111  119  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A      31     A      31     13   20  148     9   12   15   26   42   55   73   98  111  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      32     L      32     13   20  148     9   12   21   35   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K      33     K      33     13   20  148     9   12   21   35   49   70   94  105  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     R      34     R      34     13   20  148     9   12   21   35   49   61   88  102  113  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      35     L      35     13   20  148     9   12   21   35   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     R      36     R      36     13   20  148     9   12   20   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A      37     A      37     13   20  148     9   12   20   35   49   71   94  102  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T      38     T      38     13   20  148     3   12   18   35   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     S      39     S      39     13   20  148     3    8   18   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V      40     V      40      7   20  148     3    7   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     M      41     M      41      7   20  148     7   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V      42     V      42      7   20  148     7   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     R      43     R      43      7   20  148     4   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     F      44     F      44      5   32  148     5   12   21   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V      45     V      45      5   32  148     3    8   21   35   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T      46     T      46      4   32  148     3    6   15   26   42   67   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     N      47     N      47      4   37  148     1   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T      48     T      48      5   37  148     3   12   22   34   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T      49     T      49      5   37  148     3    7   17   29   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K      50     K      50      5   37  148     3    7   18   34   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E      51     E      51      5   37  148     5   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T      52     T      52     12   37  148     3   10   18   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K      53     K      53     14   37  148     8   12   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K      54     K      54     14   37  148    10   12   22   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D      55     D      55     14   37  148    10   12   18   34   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      56     L      56     14   37  148    10   11   18   30   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      57     L      57     14   37  148    10   11   20   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E      58     E      58     14   37  148    10   12   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     R      59     R      59     14   37  148    10   12   18   29   42   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      60     L      60     14   37  148    10   11   18   28   42   65   85  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K      61     K      61     14   37  148    10   11   18   29   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K      62     K      62     14   37  148    10   12   18   29   53   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L      63     L      63     14   37  148    10   12   18   28   39   60   80  101  116  125  135  139  145  148  148  148  148  148  148  148 
LCS_GDT     E      64     E      64     14   37  148     3   12   18   27   39   58   77  101  116  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     F      65     F      65     14   37  148     3   12   18   27   39   58   77  101  116  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E      66     E      66     14   37  148     3    6   18   23   46   66   85  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     I      67     I      67      8   37  148     3    8   18   30   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     S      68     S      68      8   37  148     3    7   18   30   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E      69     E      69      8   37  148     3    7   16   30   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D      70     D      70      8   37  148     3   12   21   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E      71     E      71      8   37  148     3    7   20   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     I      72     I      72      8   37  148     3   12   18   30   48   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     F      73     F      73      8   37  148     3   12   20   35   49   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T      74     T      74      8   37  148     3   12   21   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K     179     K     179      0   37  148     0    8   12   24   36   50   76  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     P     180     P     180      3   37  148     3    3   11   22   42   64   87  102  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E     181     E     181     10   37  148     3    4    8   12   24   42   68   87  109  125  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K     182     K     182     10   37  148     4    9   15   30   45   69   94  102  117  126  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T     183     T     183     10   37  148     8    9   18   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     F     184     F     184     10   37  148     8    9   17   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     F     185     F     185     10   37  148     8    9   13   26   47   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     186     L     186     10   37  148     8    9   19   35   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E     187     E     187     10   37  148     8   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     188     A     188     10   18  148     8    9   18   34   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     189     L     189     10   18  148     8    9   16   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     R     190     R     190     10   18  148     8    9   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     191     D     191     10   18  148     4    4    8   22   26   54   83  103  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     192     A     192      6   18  148     4   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     193     D     193      6   18  148     1   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     C     194     C     194      6   18  148     3    7   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     195     A     195      6   18  148     3    8   16   30   54   73   94  106  117  126  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     P     196     P     196      6   18  148     3    7   15   30   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E     198     E     198      3   16  148     3    3    7   15   30   57   83  103  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     199     A     199      5   14  148     5   12   21   32   47   64   86  102  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V     200     V     200      5   14  148     5   12   21   35   49   64   90  102  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     M     201     M     201      5   23  148     5   12   21   35   49   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     I     202     I     202      5   23  148     5   12   21   35   49   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     G     203     G     203      5   23  148     5   12   21   35   49   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     204     D     204      3   23  148     1    8   16   35   49   69   94  102  116  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     205     D     205      5   23  148     3    7   18   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     C     206     C     206      5   23  148     7   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     R     207     R     207      5   23  148     7   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     208     D     208      9   23  148     4    7   17   29   50   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     209     D     209      9   23  148     4    7   17   30   53   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V     210     V     210      9   23  148     4    7   13   25   42   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     211     D     211      9   23  148     4    8   16   35   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     G     212     G     212      9   23  148     4    7   17   30   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     213     A     213      9   23  148     4    7   12   22   38   65   89  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     Q     214     Q     214      9   23  148     4    7    8   20   36   64   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     N     215     N     215      9   23  148     4    8   17   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     I     216     I     216      9   23  148     4    8   20   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     G     217     G     217      6   23  148     4   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     M     218     M     218      6   23  148     7   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     219     L     219      6   23  148     3   10   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     G     220     G     220      6   23  148     3    5   14   30   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     I     221     I     221      4   23  148     5   12   21   35   49   73   94  105  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     222     L     222      4   23  148     3    8   16   31   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V     223     V     223      3   23  148     3    8   15   27   48   70   93  102  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K     224     K     224      3   16  148     3    3   12   21   33   54   69   93  108  118  133  139  145  148  148  148  148  148  148  148 
LCS_GDT     T     225     T     225      3   16  148     3    7   18   30   51   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     G     226     G     226      7   14  148     3    6    8   13   32   63   85  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K     227     K     227      7   15  148     3    6    9   17   34   46   77  100  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     Y     228     Y     228      7   17  148     4    5   12   21   42   70   89  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K     229     K     229      7   17  148     4    6   10   22   41   68   86  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     230     A     230      7   17  148     4    6   10   20   41   68   86  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     231     A     231      7   17  148     5    6    8   14   37   56   83  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     232     D     232      8   17  148     5    6    8   17   34   55   80  105  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E     233     E     233      8   17  148     5    5    8   19   37   55   83  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E     234     E     234      8   17  148     5    5   10   22   34   46   63   84  108  121  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     K     235     K     235      8   17  148     5    5   10   22   31   41   55   75  100  118  135  139  144  148  148  148  148  148  148  148 
LCS_GDT     I     236     I     236      8   17  148     2    7   11   22   34   47   67   91  114  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     N     237     N     237      8   17  148     3    7   11   22   31   46   56   78  103  121  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     P     238     P     238      8   17  148     3    8   15   22   37   58   85  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     P     239     P     239      8   17  148     4    8   15   22   42   65   86  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     P     240     P     240      7   17  148     6   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     Y     241     Y     241      7   17  148     7   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     242     L     242      7   17  148     4    7   15   30   52   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     T     243     T     243      7   17  148     4    6   13   27   49   69   86  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     C     244     C     244      7   17  148     4    7   15   22   32   41   77   94  112  125  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     E     245     E     245      5   14  148     3    4   11   17   26   32   42   51   71  112  127  137  144  148  148  148  148  148  148  148 
LCS_GDT     S     246     S     246      4   14  148     7   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     F     247     F     247     12   14  148    10   11   12   15   19   31   44   57  113  124  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     P     248     P     248     12   14  148    10   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     H     249     H     249     12   14  148    10   11   12   18   23   56   85  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     A     250     A     250     12   14  148    10   11   12   15   19   31   44   57  109  124  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     V     251     V     251     12   14  148    10   11   15   29   48   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     D     252     D     252     12   14  148    10   11   22   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     H     253     H     253     12   14  148    10   11   12   28   49   68   90  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     I     254     I     254     12   14  148    10   11   12   22   28   50   73   98  114  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     255     L     255     12   14  148    10   11   21   35   49   71   94  105  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     Q     256     Q     256     12   14  148    10   11   19   36   54   73   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     H     257     H     257     12   14  148     4   11   15   29   48   72   94  106  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     258     L     258     12   14  148     3    4   12   22   39   66   92  105  117  127  135  140  145  148  148  148  148  148  148  148 
LCS_GDT     L     259     L     259      4   14  148     3    5    8   17   28   42   61   85  110  126  135  140  145  148  148  148  148  148  148  148 
LCS_AVERAGE  LCS_A:  40.12  (   5.45   14.91  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     12     22     36     54     73     94    106    117    127    135    140    145    148    148    148    148    148    148    148 
GDT PERCENT_CA   6.76   8.11  14.86  24.32  36.49  49.32  63.51  71.62  79.05  85.81  91.22  94.59  97.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.14   0.44   1.02   1.54   1.87   2.17   2.53   2.80   2.97   3.22   3.36   3.53   3.68   3.79   3.79   3.79   3.79   3.79   3.79   3.79
GDT RMS_ALL_CA  18.39  12.06   4.13   3.92   3.91   3.91   3.94   3.85   3.82   3.81   3.81   3.80   3.80   3.79   3.79   3.79   3.79   3.79   3.79   3.79

#      Molecule1      Molecule2       DISTANCE
LGA    L       7      L       7          7.842
LGA    K       8      K       8          6.979
LGA    A       9      A       9          3.745
LGA    V      10      V      10          3.996
LGA    L      11      L      11          3.911
LGA    V      12      V      12          6.051
LGA    D      13      D      13          3.429
LGA    L      14      L      14          1.829
LGA    N      15      N      15          3.679
LGA    G      16      G      16          3.665
LGA    T      17      T      17          5.792
LGA    L      18      L      18          8.361
LGA    H      19      H      19          6.231
LGA    I      20      I      20          6.763
LGA    E      21      E      21          1.470
LGA    D      22      D      22          2.736
LGA    A      23      A      23          1.186
LGA    A      24      A      24          3.060
LGA    V      25      V      25          1.600
LGA    P      26      P      26          2.947
LGA    G      27      G      27          7.416
LGA    A      28      A      28          5.425
LGA    Q      29      Q      29          3.994
LGA    E      30      E      30          6.521
LGA    A      31      A      31          5.852
LGA    L      32      L      32          2.792
LGA    K      33      K      33          4.640
LGA    R      34      R      34          5.643
LGA    L      35      L      35          2.982
LGA    R      36      R      36          2.593
LGA    A      37      A      37          4.978
LGA    T      38      T      38          2.949
LGA    S      39      S      39          2.579
LGA    V      40      V      40          3.064
LGA    M      41      M      41          1.497
LGA    V      42      V      42          1.532
LGA    R      43      R      43          2.076
LGA    F      44      F      44          2.174
LGA    V      45      V      45          2.863
LGA    T      46      T      46          3.703
LGA    N      47      N      47          2.183
LGA    T      48      T      48          2.816
LGA    T      49      T      49          3.329
LGA    K      50      K      50          3.089
LGA    E      51      E      51          1.499
LGA    T      52      T      52          0.817
LGA    K      53      K      53          2.932
LGA    K      54      K      54          3.775
LGA    D      55      D      55          3.790
LGA    L      56      L      56          2.761
LGA    L      57      L      57          2.485
LGA    E      58      E      58          2.820
LGA    R      59      R      59          3.778
LGA    L      60      L      60          3.938
LGA    K      61      K      61          2.616
LGA    K      62      K      62          3.384
LGA    L      63      L      63          4.956
LGA    E      64      E      64          4.702
LGA    F      65      F      65          4.522
LGA    E      66      E      66          3.514
LGA    I      67      I      67          1.916
LGA    S      68      S      68          2.668
LGA    E      69      E      69          2.516
LGA    D      70      D      70          1.302
LGA    E      71      E      71          2.280
LGA    I      72      I      72          3.521
LGA    F      73      F      73          3.552
LGA    T      74      T      74          2.809
LGA    K     179      K     179          3.846
LGA    P     180      P     180          4.249
LGA    E     181      E     181          5.241
LGA    K     182      K     182          4.797
LGA    T     183      T     183          3.009
LGA    F     184      F     184          1.565
LGA    F     185      F     185          3.407
LGA    L     186      L     186          3.726
LGA    E     187      E     187          2.130
LGA    A     188      A     188          1.408
LGA    L     189      L     189          1.870
LGA    R     190      R     190          2.721
LGA    D     191      D     191          4.551
LGA    A     192      A     192          2.883
LGA    D     193      D     193          3.002
LGA    C     194      C     194          2.494
LGA    A     195      A     195          3.739
LGA    P     196      P     196          2.991
LGA    E     198      E     198          4.650
LGA    A     199      A     199          5.205
LGA    V     200      V     200          5.026
LGA    M     201      M     201          3.952
LGA    I     202      I     202          3.753
LGA    G     203      G     203          3.988
LGA    D     204      D     204          5.211
LGA    D     205      D     205          2.099
LGA    C     206      C     206          0.829
LGA    R     207      R     207          1.293
LGA    D     208      D     208          2.510
LGA    D     209      D     209          2.361
LGA    V     210      V     210          3.269
LGA    D     211      D     211          2.988
LGA    G     212      G     212          2.157
LGA    A     213      A     213          3.014
LGA    Q     214      Q     214          3.536
LGA    N     215      N     215          2.228
LGA    I     216      I     216          1.360
LGA    G     217      G     217          0.784
LGA    M     218      M     218          0.586
LGA    L     219      L     219          1.555
LGA    G     220      G     220          2.519
LGA    I     221      I     221          4.091
LGA    L     222      L     222          3.089
LGA    V     223      V     223          4.218
LGA    K     224      K     224          6.722
LGA    T     225      T     225          3.139
LGA    G     226      G     226          3.948
LGA    K     227      K     227          4.529
LGA    Y     228      Y     228          3.164
LGA    K     229      K     229          3.561
LGA    A     230      A     230          3.527
LGA    A     231      A     231          3.798
LGA    D     232      D     232          4.015
LGA    E     233      E     233          3.778
LGA    E     234      E     234          5.618
LGA    K     235      K     235          6.686
LGA    I     236      I     236          4.882
LGA    N     237      N     237          6.346
LGA    P     238      P     238          3.338
LGA    P     239      P     239          2.913
LGA    P     240      P     240          0.369
LGA    Y     241      Y     241          0.769
LGA    L     242      L     242          2.973
LGA    T     243      T     243          2.969
LGA    C     244      C     244          4.954
LGA    E     245      E     245          6.237
LGA    S     246      S     246          0.857
LGA    F     247      F     247          5.326
LGA    P     248      P     248          1.303
LGA    H     249      H     249          3.819
LGA    A     250      A     250          5.373
LGA    V     251      V     251          3.906
LGA    D     252      D     252          0.783
LGA    H     253      H     253          2.926
LGA    I     254      I     254          5.460
LGA    L     255      L     255          4.897
LGA    Q     256      Q     256          2.200
LGA    H     257      H     257          3.815
LGA    L     258      L     258          4.646
LGA    L     259      L     259          6.388

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  148    4.0    106    2.80    51.014    46.719     3.661

LGA_LOCAL      RMSD =  2.796  Number of atoms =  106  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.852  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  3.793  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.900391 * X  +  -0.007168 * Y  +   0.435022 * Z  +  29.426085
  Y_new =  -0.172751 * X  +  -0.923561 * Y  +   0.342335 * Z  +  33.109589
  Z_new =   0.399315 * X  +  -0.383386 * Y  +  -0.832804 * Z  +  90.764717 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.710161    0.431432  [ DEG:  -155.2808     24.7192 ]
  Theta =  -0.410770   -2.730823  [ DEG:   -23.5354   -156.4646 ]
  Phi   =  -0.189558    2.952034  [ DEG:   -10.8609    169.1391 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS168_2-D1                               
REMARK     2: T0341_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS168_2-D1.T0341_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  148   4.0  106   2.80  46.719     3.79
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS168_2-D1
PFRMAT TS
TARGET T0341
MODEL 2
PARENT N/A
ATOM      7  CA  LEU     7      31.041  43.984 100.652  1.00 25.00           C
ATOM      8  CA  LYS     8      29.057  42.482 103.466  1.00 25.00           C
ATOM      9  CA  ALA     9      27.252  39.672 101.725  1.00 25.00           C
ATOM     10  CA  VAL    10      27.316  37.489  98.607  1.00 25.00           C
ATOM     11  CA  LEU    11      26.599  35.098  95.736  1.00 25.00           C
ATOM     12  CA  VAL    12      28.823  33.581  93.117  1.00 25.00           C
ATOM     13  CA  ASP    13      29.536  30.026  94.397  1.00 25.00           C
ATOM     14  CA  LEU    14      31.078  26.891  95.967  1.00 25.00           C
ATOM     15  CA  ASN    15      33.566  29.732  96.704  1.00 25.00           C
ATOM     16  CA  GLY    16      36.853  31.584  96.573  1.00 25.00           C
ATOM     17  CA  THR    17      37.442  30.835  92.833  1.00 25.00           C
ATOM     18  CA  LEU    18      35.427  27.586  92.528  1.00 25.00           C
ATOM     19  CA  HIS    19      34.497  24.111  93.578  1.00 25.00           C
ATOM     20  CA  ILE    20      34.453  20.326  92.894  1.00 25.00           C
ATOM     21  CA  GLU    21      37.077  18.991  95.301  1.00 25.00           C
ATOM     22  CA  ASP    22      39.055  18.151  98.441  1.00 25.00           C
ATOM     23  CA  ALA    23      39.175  19.534 101.921  1.00 25.00           C
ATOM     24  CA  ALA    24      39.062  23.032 100.480  1.00 25.00           C
ATOM     25  CA  VAL    25      38.232  24.914 103.711  1.00 25.00           C
ATOM     26  CA  PRO    26      39.847  28.004 105.277  1.00 25.00           C
ATOM     27  CA  GLY    27      38.499  30.088 102.320  1.00 25.00           C
ATOM     28  CA  ALA    28      34.731  29.679 101.765  1.00 25.00           C
ATOM     29  CA  GLN    29      34.338  28.269 105.304  1.00 25.00           C
ATOM     30  CA  GLU    30      36.307  31.229 106.728  1.00 25.00           C
ATOM     31  CA  ALA    31      34.081  33.673 104.794  1.00 25.00           C
ATOM     32  CA  LEU    32      30.951  31.925 106.140  1.00 25.00           C
ATOM     33  CA  LYS    33      32.329  32.150 109.707  1.00 25.00           C
ATOM     34  CA  ARG    34      33.046  35.881 109.221  1.00 25.00           C
ATOM     35  CA  LEU    35      29.483  36.421 107.921  1.00 25.00           C
ATOM     36  CA  ARG    36      28.069  34.564 110.957  1.00 25.00           C
ATOM     37  CA  ALA    37      30.188  36.730 113.300  1.00 25.00           C
ATOM     38  CA  THR    38      27.658  39.575 113.101  1.00 25.00           C
ATOM     39  CA  SER    39      24.475  39.313 111.032  1.00 25.00           C
ATOM     40  CA  VAL    40      24.383  36.863 108.152  1.00 25.00           C
ATOM     41  CA  MET    41      22.770  36.731 104.694  1.00 25.00           C
ATOM     42  CA  VAL    42      25.452  34.419 103.345  1.00 25.00           C
ATOM     43  CA  ARG    43      25.453  32.504 100.039  1.00 25.00           C
ATOM     44  CA  PHE    44      25.133  30.366  96.851  1.00 25.00           C
ATOM     45  CA  VAL    45      24.610  31.140  93.127  1.00 25.00           C
ATOM     46  CA  THR    46      26.220  31.907  89.756  1.00 25.00           C
ATOM     47  CA  ASN    47      28.424  28.767  89.966  1.00 25.00           C
ATOM     48  CA  THR    48      29.640  25.275  89.072  1.00 25.00           C
ATOM     49  CA  THR    49      26.463  23.663  87.719  1.00 25.00           C
ATOM     50  CA  LYS    50      26.856  19.973  88.407  1.00 25.00           C
ATOM     51  CA  GLU    51      24.344  20.366  91.181  1.00 25.00           C
ATOM     52  CA  THR    52      21.202  22.213  92.223  1.00 25.00           C
ATOM     53  CA  LYS    53      22.190  21.013  95.659  1.00 25.00           C
ATOM     54  CA  LYS    54      22.981  17.546  97.080  1.00 25.00           C
ATOM     55  CA  ASP    55      26.721  18.373  97.081  1.00 25.00           C
ATOM     56  CA  LEU    56      26.016  21.672  98.894  1.00 25.00           C
ATOM     57  CA  LEU    57      23.906  19.818 101.498  1.00 25.00           C
ATOM     58  CA  GLU    58      26.728  17.282 102.016  1.00 25.00           C
ATOM     59  CA  ARG    59      29.244  20.135 102.466  1.00 25.00           C
ATOM     60  CA  LEU    60      26.932  21.800 105.028  1.00 25.00           C
ATOM     61  CA  LYS    61      26.606  18.488 106.922  1.00 25.00           C
ATOM     62  CA  LYS    62      30.415  18.092 106.938  1.00 25.00           C
ATOM     63  CA  LEU    63      30.814  21.580 108.502  1.00 25.00           C
ATOM     64  CA  GLU    64      27.464  22.415 110.183  1.00 25.00           C
ATOM     65  CA  PHE    65      25.461  25.205 108.549  1.00 25.00           C
ATOM     66  CA  GLU    66      22.601  22.897 107.467  1.00 25.00           C
ATOM     67  CA  ILE    67      22.098  25.513 104.742  1.00 25.00           C
ATOM     68  CA  SER    68      18.422  24.929 105.372  1.00 25.00           C
ATOM     69  CA  GLU    69      16.874  24.856 101.843  1.00 25.00           C
ATOM     70  CA  ASP    70      16.183  28.481 100.821  1.00 25.00           C
ATOM     71  CA  GLU    71      19.790  28.847  99.588  1.00 25.00           C
ATOM     72  CA  ILE    72      20.547  25.929  97.278  1.00 25.00           C
ATOM     73  CA  PHE    73      20.968  27.653  93.909  1.00 25.00           C
ATOM     74  CA  THR    74      23.002  26.812  90.744  1.00 25.00           C
ATOM    179  CA  LYS   179      28.741  38.401  89.297  1.00 25.00           C
ATOM    180  CA  PRO   180      26.922  40.530  86.662  1.00 25.00           C
ATOM    181  CA  GLU   181      24.330  43.221  87.087  1.00 25.00           C
ATOM    182  CA  LYS   182      20.653  42.960  86.362  1.00 25.00           C
ATOM    183  CA  THR   183      19.372  39.366  86.688  1.00 25.00           C
ATOM    184  CA  PHE   184      22.409  38.454  88.836  1.00 25.00           C
ATOM    185  CA  PHE   185      21.777  41.501  91.067  1.00 25.00           C
ATOM    186  CA  LEU   186      18.102  40.491  91.449  1.00 25.00           C
ATOM    187  CA  GLU   187      19.154  36.930  92.388  1.00 25.00           C
ATOM    188  CA  ALA   188      21.606  38.312  94.985  1.00 25.00           C
ATOM    189  CA  LEU   189      18.846  40.529  96.447  1.00 25.00           C
ATOM    190  CA  ARG   190      16.495  37.512  96.647  1.00 25.00           C
ATOM    191  CA  ASP   191      19.214  35.479  98.419  1.00 25.00           C
ATOM    192  CA  ALA   192      19.113  38.352 100.971  1.00 25.00           C
ATOM    193  CA  ASP   193      16.474  41.101 100.828  1.00 25.00           C
ATOM    194  CA  CYS   194      18.284  44.347 101.642  1.00 25.00           C
ATOM    195  CA  ALA   195      18.181  45.946  98.210  1.00 25.00           C
ATOM    196  CA  PRO   196      21.769  46.717  97.193  1.00 25.00           C
ATOM    197  CA  GLU   197      23.305  46.201 100.664  1.00 25.00           C
ATOM    198  CA  GLU   198      25.970  43.893  99.168  1.00 25.00           C
ATOM    199  CA  ALA   199      25.110  43.279  95.558  1.00 25.00           C
ATOM    200  CA  VAL   200      28.331  41.364  95.473  1.00 25.00           C
ATOM    201  CA  MET   201      30.187  38.277  94.274  1.00 25.00           C
ATOM    202  CA  ILE   202      32.824  35.717  95.409  1.00 25.00           C
ATOM    203  CA  GLY   203      33.990  33.219  92.812  1.00 25.00           C
ATOM    204  CA  ASP   204      36.045  35.203  90.284  1.00 25.00           C
ATOM    205  CA  ASP   205      39.791  35.382  89.670  1.00 25.00           C
ATOM    206  CA  CYS   206      39.798  39.129  90.331  1.00 25.00           C
ATOM    207  CA  ARG   207      38.121  39.988  87.089  1.00 25.00           C
ATOM    208  CA  ASP   208      34.393  39.221  86.670  1.00 25.00           C
ATOM    209  CA  ASP   209      33.835  39.760  90.419  1.00 25.00           C
ATOM    210  CA  VAL   210      35.692  43.105  90.241  1.00 25.00           C
ATOM    211  CA  ASP   211      33.540  44.167  87.256  1.00 25.00           C
ATOM    212  CA  GLY   212      30.365  43.218  89.176  1.00 25.00           C
ATOM    213  CA  ALA   213      31.555  45.248  92.198  1.00 25.00           C
ATOM    214  CA  GLN   214      32.251  48.256  89.933  1.00 25.00           C
ATOM    215  CA  ASN   215      28.754  47.944  88.402  1.00 25.00           C
ATOM    216  CA  ILE   216      26.152  47.437  91.135  1.00 25.00           C
ATOM    217  CA  GLY   217      27.577  49.068  94.319  1.00 25.00           C
ATOM    218  CA  MET   218      29.260  46.300  96.227  1.00 25.00           C
ATOM    219  CA  LEU   219      32.493  44.564  97.157  1.00 25.00           C
ATOM    220  CA  GLY   220      32.789  40.824  97.761  1.00 25.00           C
ATOM    221  CA  ILE   221      35.489  40.216  95.187  1.00 25.00           C
ATOM    222  CA  LEU   222      37.746  37.246  95.027  1.00 25.00           C
ATOM    223  CA  VAL   223      37.854  33.729  96.388  1.00 25.00           C
ATOM    224  CA  LYS   224      39.648  31.916  93.565  1.00 25.00           C
ATOM    225  CA  THR   225      40.435  29.340  96.282  1.00 25.00           C
ATOM    226  CA  GLY   226      43.734  31.186  96.990  1.00 25.00           C
ATOM    227  CA  LYS   227      45.604  32.099  93.807  1.00 25.00           C
ATOM    228  CA  TYR   228      45.631  35.889  93.464  1.00 25.00           C
ATOM    229  CA  LYS   229      49.358  36.098  94.165  1.00 25.00           C
ATOM    230  CA  ALA   230      51.932  38.715  95.240  1.00 25.00           C
ATOM    231  CA  ALA   231      52.986  41.083  92.421  1.00 25.00           C
ATOM    232  CA  ASP   232      49.555  40.680  90.766  1.00 25.00           C
ATOM    233  CA  GLU   233      47.831  41.439  94.102  1.00 25.00           C
ATOM    234  CA  GLU   234      49.999  44.566  94.538  1.00 25.00           C
ATOM    235  CA  LYS   235      48.019  46.531  91.996  1.00 25.00           C
ATOM    236  CA  ILE   236      44.757  47.518  90.329  1.00 25.00           C
ATOM    237  CA  ASN   237      44.508  50.480  92.711  1.00 25.00           C
ATOM    238  CA  PRO   238      40.927  49.372  93.543  1.00 25.00           C
ATOM    239  CA  PRO   239      42.704  46.346  94.912  1.00 25.00           C
ATOM    240  CA  PRO   240      39.323  44.813  95.715  1.00 25.00           C
ATOM    241  CA  TYR   241      38.208  46.311  99.072  1.00 25.00           C
ATOM    242  CA  LEU   242      37.425  42.698  99.969  1.00 25.00           C
ATOM    243  CA  THR   243      40.138  40.210 101.019  1.00 25.00           C
ATOM    244  CA  CYS   244      38.753  36.680 100.708  1.00 25.00           C
ATOM    245  CA  GLU   245      38.243  34.037 103.413  1.00 25.00           C
ATOM    246  CA  SER   246      41.845  33.136 102.810  1.00 25.00           C
ATOM    247  CA  PHE   247      41.966  32.958 106.586  1.00 25.00           C
ATOM    248  CA  PRO   248      38.733  33.238 108.620  1.00 25.00           C
ATOM    249  CA  HIS   249      40.471  35.574 111.107  1.00 25.00           C
ATOM    250  CA  ALA   250      41.755  37.736 108.219  1.00 25.00           C
ATOM    251  CA  VAL   251      38.225  37.903 106.743  1.00 25.00           C
ATOM    252  CA  ASP   252      36.821  38.937 110.153  1.00 25.00           C
ATOM    253  CA  HIS   253      39.493  41.664 110.453  1.00 25.00           C
ATOM    254  CA  ILE   254      38.623  42.938 106.948  1.00 25.00           C
ATOM    255  CA  LEU   255      34.907  43.021 107.874  1.00 25.00           C
ATOM    256  CA  GLN   256      35.722  44.973 111.067  1.00 25.00           C
ATOM    257  CA  HIS   257      37.809  47.464 109.041  1.00 25.00           C
ATOM    258  CA  LEU   258      34.924  47.901 106.560  1.00 25.00           C
ATOM    259  CA  LEU   259      32.573  49.463 109.168  1.00 25.00           C
TER
END
