
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  148 , name T0341TS168_5-D1
# Molecule2: number of CA atoms  148 ( 1158),  selected  148 , name T0341_D1.pdb
# PARAMETERS: T0341TS168_5-D1.T0341_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148         7 - 259         3.43     3.43
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43        45 - 191         1.99     4.94
  LCS_AVERAGE:     18.37

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        49 - 64          0.96     8.80
  LCS_AVERAGE:      5.75

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     L       7     L       7      6   12  148     1    6   11   18   36   47   75   99  119  133  138  143  146  148  148  148  148  148  148  148 
LCS_GDT     K       8     K       8      6   12  148     3    6   11   18   28   47   75  113  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A       9     A       9      6   12  148     3    8   17   34   59   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V      10     V      10      6   12  148     3    9   19   30   48   77   98  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      11     L      11      6   12  148     3   10   19   29   52   76   99  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V      12     V      12      6   12  148     3    9   19   29   39   54   79  106  124  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D      13     D      13      6   12  148     3   12   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      14     L      14      6   12  148     4   10   22   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     N      15     N      15      6   12  148     4   10   23   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     G      16     G      16      6   12  148     4    9   22   42   60   83  102  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T      17     T      17      6   12  148     4   10   22   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      18     L      18      6   12  148     4   10   23   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     H      19     H      19      4   12  148     3   12   25   39   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     I      20     I      20      4    7  148     3    4   10   14   20   38   46   66  103  123  136  142  146  148  148  148  148  148  148  148 
LCS_GDT     E      21     E      21      4    7  148     3    6   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D      22     D      22      4    7  148     3    3   16   26   51   73   99  114  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A      23     A      23      4    7  148     3    3   16   35   58   81  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A      24     A      24      3    7  148     3    8   22   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V      25     V      25      4    7  148     3   11   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     P      26     P      26      4   19  148     3    3   13   34   57   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     G      27     G      27     14   20  148     9   11   15   26   34   57   73   90  117  128  136  142  145  148  148  148  148  148  148  148 
LCS_GDT     A      28     A      28     14   20  148     9   11   15   25   34   58   74  100  120  132  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     Q      29     Q      29     14   20  148     9   11   15   26   47   64   93  113  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E      30     E      30     14   20  148     9   11   15   26   45   64   85  110  124  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A      31     A      31     14   20  148     9   12   17   26   45   70   96  113  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      32     L      32     14   20  148     9   11   17   38   57   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K      33     K      33     14   20  148     9   11   19   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     R      34     R      34     14   22  148     9   11   19   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      35     L      35     14   25  148     9   11   23   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     R      36     R      36     14   27  148     9   11   22   40   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A      37     A      37     14   27  148     3   11   23   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T      38     T      38     14   34  148     4   11   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     S      39     S      39     14   34  148     3    9   23   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V      40     V      40     14   34  148     3    7   21   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     M      41     M      41      6   34  148     5   10   22   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V      42     V      42      6   34  148     5   10   23   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     R      43     R      43      6   34  148     5   10   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     F      44     F      44      6   42  148     5   10   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V      45     V      45      5   43  148     3    8   19   31   54   82  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T      46     T      46      3   43  148     3    4   22   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     N      47     N      47      8   43  148     3    7   18   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T      48     T      48      8   43  148     3    7   20   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T      49     T      49     16   43  148     3   15   23   32   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K      50     K      50     16   43  148     5   15   23   37   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E      51     E      51     16   43  148     4   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T      52     T      52     16   43  148     3    8   20   40   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K      53     K      53     16   43  148     8   15   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K      54     K      54     16   43  148     9   15   23   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D      55     D      55     16   43  148     9   15   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      56     L      56     16   43  148     9   15   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      57     L      57     16   43  148     9   15   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E      58     E      58     16   43  148     9   15   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     R      59     R      59     16   43  148     9   15   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      60     L      60     16   43  148     9   15   19   30   53   81  104  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K      61     K      61     16   43  148     9   15   23   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K      62     K      62     16   43  148     9   15   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L      63     L      63     16   43  148     7   15   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E      64     E      64     16   43  148     3   13   23   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     F      65     F      65      9   43  148     3   10   20   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E      66     E      66      9   43  148     5   12   25   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     I      67     I      67      9   43  148     4   13   25   37   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     S      68     S      68      9   43  148     4   12   25   37   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E      69     E      69      9   43  148     4   12   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D      70     D      70      9   43  148     4   11   25   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E      71     E      71      9   43  148     4   11   24   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     I      72     I      72      3   43  148     3    3    6   26   53   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     F      73     F      73      3   43  148     4   13   25   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T      74     T      74      3   43  148     2   10   21   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K     179     K     179      3   43  148     1   15   20   32   42   60   86  109  122  132  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     P     180     P     180      3   43  148     1   10   19   31   38   51   75   90  111  124  134  142  146  148  148  148  148  148  148  148 
LCS_GDT     E     181     E     181      3   43  148     0    3   15   31   42   66   90  113  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K     182     K     182     10   43  148     6   10   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T     183     T     183     10   43  148     8   13   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     F     184     F     184     10   43  148     8   15   23   42   60   81  102  114  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     F     185     F     185     10   43  148     8   12   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     186     L     186     10   43  148     8   13   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E     187     E     187     10   43  148     8   12   25   42   60   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     188     A     188     10   43  148     8   12   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     189     L     189     10   43  148     8   12   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     R     190     R     190     10   43  148     8   12   18   32   57   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     191     D     191     10   43  148     4   11   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     192     A     192      5   42  148     3    5    8   21   41   65   99  114  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     193     D     193      5   13  148     3    5    7   10   16   32   50   71  102  127  139  142  146  148  148  148  148  148  148  148 
LCS_GDT     C     194     C     194      5   13  148     3    9   21   36   56   69   98  114  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     195     A     195      5    9  148     3    4   20   32   44   65   89  109  122  132  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     P     196     P     196      5    9  148     3   13   23   32   52   71   92  111  122  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E     198     E     198      3   28  148     3    8   17   38   57   82  103  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     199     A     199      5   28  148     3    9   19   34   57   82  100  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V     200     V     200      5   28  148     3   10   19   34   52   76   98  112  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     M     201     M     201      5   28  148     3   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     I     202     I     202      5   28  148     4    8   17   25   43   62   85  109  124  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     G     203     G     203      5   28  148     5   12   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     204     D     204      3   28  148     2    8   21   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     205     D     205      3   28  148     1    5   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     C     206     C     206      5   28  148     3    8   14   30   53   77  103  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     R     207     R     207      5   28  148     3    8   16   33   56   78  102  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     208     D     208      8   28  148     3   10   17   31   49   73   96  113  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     209     D     209      8   28  148     3   10   19   34   57   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V     210     V     210      8   28  148     4   10   26   43   59   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     211     D     211      8   28  148     4   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     G     212     G     212      8   28  148     4   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     213     A     213      8   28  148     4    9   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     Q     214     Q     214      8   28  148     4   10   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     N     215     N     215      8   28  148     5   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     I     216     I     216      8   28  148     3    6   18   36   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     G     217     G     217      7   28  148     4   10   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     M     218     M     218      7   28  148     3    9   20   38   57   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     219     L     219      7   28  148     3    9   21   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     G     220     G     220      7   28  148     4   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     I     221     I     221      7   28  148     3    8   22   39   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     222     L     222      7   28  148     4   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V     223     V     223      5   28  148     3   11   25   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K     224     K     224      4   28  148     3    6   20   42   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T     225     T     225      4   28  148     3    6   17   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     G     226     G     226      5   28  148     4   10   17   36   60   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K     227     K     227      6   26  148     3   10   17   33   55   77   98  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     Y     228     Y     228      6   26  148     4   10   19   36   59   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K     229     K     229      6   26  148     3   10   19   36   59   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     230     A     230      6   26  148     3   10   19   36   60   82  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     231     A     231      6   25  148     4    5   11   24   49   73   96  114  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     232     D     232      6   16  148     4    5    7   19   38   60   92  110  127  134  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E     233     E     233      5   16  148     4    4   16   33   51   77  102  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E     234     E     234      5   16  148     4    4    9   19   43   71   85  103  122  132  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     K     235     K     235      7   16  148     3    4    9   15   26   42   60   85  108  118  131  140  145  148  148  148  148  148  148  148 
LCS_GDT     I     236     I     236      7   16  148     3    6   13   26   35   63   83  101  116  132  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     N     237     N     237      7   16  148     3    8   16   29   49   71   94  113  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     P     238     P     238      7   16  148     3   10   19   38   60   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     P     239     P     239      7   16  148     4    6   13   26   48   71   94  114  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     P     240     P     240      7   16  148     4    7   16   33   58   82  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     Y     241     Y     241      7   16  148     4    9   24   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     242     L     242      5   15  148     4   11   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     T     243     T     243      5   13  148     4    9   19   29   53   75  102  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     C     244     C     244      5   16  148     4   10   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     E     245     E     245      5   16  148     4    8   16   43   60   83  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     S     246     S     246     12   16  148     3    6   17   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     F     247     F     247     12   16  148    10   12   14   26   56   82  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     P     248     P     248     12   16  148    10   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     H     249     H     249     12   16  148    10   12   20   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     A     250     A     250     12   16  148    10   12   14   17   56   80  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     V     251     V     251     12   16  148    10   12   14   26   57   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     D     252     D     252     12   16  148    10   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     H     253     H     253     12   16  148    10   12   16   38   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     I     254     I     254     12   16  148    10   12   14   26   43   71  103  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     255     L     255     12   16  148    10   12   14   34   57   82  102  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     Q     256     Q     256     12   16  148    10   13   26   43   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     H     257     H     257     12   16  148     4   12   16   36   60   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     258     L     258     12   16  148     3    6   14   33   58   84  105  115  127  135  139  143  146  148  148  148  148  148  148  148 
LCS_GDT     L     259     L     259      4   16  148     3    4    5   11   22   55   75   97  119  131  139  143  146  148  148  148  148  148  148  148 
LCS_AVERAGE  LCS_A:  41.37  (   5.75   18.37  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     15     26     43     60     84    105    115    127    135    139    143    146    148    148    148    148    148    148    148 
GDT PERCENT_CA   6.76  10.14  17.57  29.05  40.54  56.76  70.95  77.70  85.81  91.22  93.92  96.62  98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.14   0.65   1.17   1.52   1.84   2.21   2.49   2.64   2.86   3.03   3.12   3.24   3.35   3.43   3.43   3.43   3.43   3.43   3.43   3.43
GDT RMS_ALL_CA  15.20   9.21   3.81   3.63   3.98   3.53   3.45   3.46   3.46   3.44   3.44   3.44   3.43   3.43   3.43   3.43   3.43   3.43   3.43   3.43

#      Molecule1      Molecule2       DISTANCE
LGA    L       7      L       7          5.785
LGA    K       8      K       8          4.867
LGA    A       9      A       9          2.927
LGA    V      10      V      10          3.843
LGA    L      11      L      11          3.945
LGA    V      12      V      12          4.951
LGA    D      13      D      13          1.644
LGA    L      14      L      14          2.842
LGA    N      15      N      15          2.868
LGA    G      16      G      16          3.724
LGA    T      17      T      17          3.083
LGA    L      18      L      18          3.099
LGA    H      19      H      19          2.523
LGA    I      20      I      20          6.600
LGA    E      21      E      21          2.578
LGA    D      22      D      22          4.429
LGA    A      23      A      23          3.361
LGA    A      24      A      24          2.213
LGA    V      25      V      25          2.681
LGA    P      26      P      26          2.551
LGA    G      27      G      27          6.162
LGA    A      28      A      28          5.354
LGA    Q      29      Q      29          4.357
LGA    E      30      E      30          4.808
LGA    A      31      A      31          4.313
LGA    L      32      L      32          2.886
LGA    K      33      K      33          2.860
LGA    R      34      R      34          2.710
LGA    L      35      L      35          1.965
LGA    R      36      R      36          1.846
LGA    A      37      A      37          2.646
LGA    T      38      T      38          2.205
LGA    S      39      S      39          3.269
LGA    V      40      V      40          3.220
LGA    M      41      M      41          2.149
LGA    V      42      V      42          1.534
LGA    R      43      R      43          1.355
LGA    F      44      F      44          1.738
LGA    V      45      V      45          3.380
LGA    T      46      T      46          2.593
LGA    N      47      N      47          2.673
LGA    T      48      T      48          2.274
LGA    T      49      T      49          3.088
LGA    K      50      K      50          2.460
LGA    E      51      E      51          0.450
LGA    T      52      T      52          1.896
LGA    K      53      K      53          1.305
LGA    K      54      K      54          1.864
LGA    D      55      D      55          1.020
LGA    L      56      L      56          1.636
LGA    L      57      L      57          2.265
LGA    E      58      E      58          0.681
LGA    R      59      R      59          1.924
LGA    L      60      L      60          3.557
LGA    K      61      K      61          2.825
LGA    K      62      K      62          1.562
LGA    L      63      L      63          2.661
LGA    E      64      E      64          2.696
LGA    F      65      F      65          2.294
LGA    E      66      E      66          1.525
LGA    I      67      I      67          2.590
LGA    S      68      S      68          2.988
LGA    E      69      E      69          2.547
LGA    D      70      D      70          1.530
LGA    E      71      E      71          1.973
LGA    I      72      I      72          3.386
LGA    F      73      F      73          1.432
LGA    T      74      T      74          3.306
LGA    K     179      K     179          5.529
LGA    P     180      P     180          6.812
LGA    E     181      E     181          5.121
LGA    K     182      K     182          3.443
LGA    T     183      T     183          3.565
LGA    F     184      F     184          4.359
LGA    F     185      F     185          2.868
LGA    L     186      L     186          2.976
LGA    E     187      E     187          3.972
LGA    A     188      A     188          3.574
LGA    L     189      L     189          2.702
LGA    R     190      R     190          3.814
LGA    D     191      D     191          1.697
LGA    A     192      A     192          4.551
LGA    D     193      D     193          7.439
LGA    C     194      C     194          5.074
LGA    A     195      A     195          6.042
LGA    P     196      P     196          5.284
LGA    E     198      E     198          3.488
LGA    A     199      A     199          3.796
LGA    V     200      V     200          4.295
LGA    M     201      M     201          1.529
LGA    I     202      I     202          5.040
LGA    G     203      G     203          1.251
LGA    D     204      D     204          2.416
LGA    D     205      D     205          2.482
LGA    C     206      C     206          3.926
LGA    R     207      R     207          4.256
LGA    D     208      D     208          4.683
LGA    D     209      D     209          2.936
LGA    V     210      V     210          2.243
LGA    D     211      D     211          1.696
LGA    G     212      G     212          1.145
LGA    A     213      A     213          2.046
LGA    Q     214      Q     214          1.998
LGA    N     215      N     215          0.760
LGA    I     216      I     216          2.430
LGA    G     217      G     217          0.432
LGA    M     218      M     218          2.735
LGA    L     219      L     219          2.398
LGA    G     220      G     220          0.905
LGA    I     221      I     221          2.904
LGA    L     222      L     222          0.382
LGA    V     223      V     223          1.848
LGA    K     224      K     224          3.041
LGA    T     225      T     225          2.763
LGA    G     226      G     226          3.000
LGA    K     227      K     227          4.251
LGA    Y     228      Y     228          3.186
LGA    K     229      K     229          3.211
LGA    A     230      A     230          3.515
LGA    A     231      A     231          4.788
LGA    D     232      D     232          5.102
LGA    E     233      E     233          4.462
LGA    E     234      E     234          6.495
LGA    K     235      K     235          8.530
LGA    I     236      I     236          6.774
LGA    N     237      N     237          5.247
LGA    P     238      P     238          3.151
LGA    P     239      P     239          4.872
LGA    P     240      P     240          3.431
LGA    Y     241      Y     241          2.107
LGA    L     242      L     242          1.765
LGA    T     243      T     243          3.983
LGA    C     244      C     244          1.704
LGA    E     245      E     245          3.066
LGA    S     246      S     246          2.350
LGA    F     247      F     247          3.237
LGA    P     248      P     248          1.571
LGA    H     249      H     249          2.825
LGA    A     250      A     250          3.676
LGA    V     251      V     251          3.071
LGA    D     252      D     252          1.684
LGA    H     253      H     253          2.379
LGA    I     254      I     254          3.751
LGA    L     255      L     255          3.543
LGA    Q     256      Q     256          1.523
LGA    H     257      H     257          2.204
LGA    L     258      L     258          3.012
LGA    L     259      L     259          5.447

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  148    4.0    115    2.63    54.223    50.506     4.206

LGA_LOCAL      RMSD =  2.634  Number of atoms =  115  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.465  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  3.433  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.762390 * X  +   0.312784 * Y  +   0.566504 * Z  +  29.367500
  Y_new =  -0.110581 * X  +  -0.799580 * Y  +   0.590291 * Z  +  34.033890
  Z_new =   0.637599 * X  +  -0.512676 * Y  +  -0.575005 * Z  +  91.487091 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.413435    0.728157  [ DEG:  -138.2797     41.7203 ]
  Theta =  -0.691378   -2.450215  [ DEG:   -39.6130   -140.3870 ]
  Phi   =  -0.144040    2.997552  [ DEG:    -8.2529    171.7471 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS168_5-D1                               
REMARK     2: T0341_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS168_5-D1.T0341_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  148   4.0  115   2.63  50.506     3.43
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS168_5-D1
PFRMAT TS
TARGET T0341
MODEL 5
PARENT N/A
ATOM      7  CA  LEU     7      29.484  45.162 101.737  1.00 25.00           C
ATOM      8  CA  LYS     8      26.577  42.839 102.763  1.00 25.00           C
ATOM      9  CA  ALA     9      25.399  39.810 100.712  1.00 25.00           C
ATOM     10  CA  VAL    10      27.233  36.872  99.066  1.00 25.00           C
ATOM     11  CA  LEU    11      25.500  35.678  95.923  1.00 25.00           C
ATOM     12  CA  VAL    12      28.449  33.873  94.322  1.00 25.00           C
ATOM     13  CA  ASP    13      30.363  30.971  95.927  1.00 25.00           C
ATOM     14  CA  LEU    14      31.402  27.792  94.125  1.00 25.00           C
ATOM     15  CA  ASN    15      33.950  26.108  91.796  1.00 25.00           C
ATOM     16  CA  GLY    16      36.040  29.233  92.456  1.00 25.00           C
ATOM     17  CA  THR    17      34.806  30.294  95.891  1.00 25.00           C
ATOM     18  CA  LEU    18      34.691  27.085  97.842  1.00 25.00           C
ATOM     19  CA  HIS    19      34.425  23.379  98.455  1.00 25.00           C
ATOM     20  CA  ILE    20      34.262  20.077 100.343  1.00 25.00           C
ATOM     21  CA  GLU    21      37.100  19.049  98.026  1.00 25.00           C
ATOM     22  CA  ASP    22      40.498  19.021  99.627  1.00 25.00           C
ATOM     23  CA  ALA    23      41.153  20.542 103.098  1.00 25.00           C
ATOM     24  CA  ALA    24      39.043  23.451 101.769  1.00 25.00           C
ATOM     25  CA  VAL    25      37.678  24.942 105.042  1.00 25.00           C
ATOM     26  CA  PRO    26      39.684  27.833 106.412  1.00 25.00           C
ATOM     27  CA  GLY    27      38.509  30.561 103.947  1.00 25.00           C
ATOM     28  CA  ALA    28      35.085  30.794 102.249  1.00 25.00           C
ATOM     29  CA  GLN    29      33.699  28.128 104.624  1.00 25.00           C
ATOM     30  CA  GLU    30      35.087  30.049 107.632  1.00 25.00           C
ATOM     31  CA  ALA    31      33.474  33.276 106.347  1.00 25.00           C
ATOM     32  CA  LEU    32      30.129  31.463 105.919  1.00 25.00           C
ATOM     33  CA  LYS    33      30.387  30.094 109.487  1.00 25.00           C
ATOM     34  CA  ARG    34      31.127  33.611 110.809  1.00 25.00           C
ATOM     35  CA  LEU    35      28.094  34.987 108.917  1.00 25.00           C
ATOM     36  CA  ARG    36      25.891  32.220 110.386  1.00 25.00           C
ATOM     37  CA  ALA    37      27.172  33.033 113.902  1.00 25.00           C
ATOM     38  CA  THR    38      26.404  36.785 114.112  1.00 25.00           C
ATOM     39  CA  SER    39      22.846  37.203 113.010  1.00 25.00           C
ATOM     40  CA  VAL    40      23.320  36.690 109.227  1.00 25.00           C
ATOM     41  CA  MET    41      23.705  36.840 105.447  1.00 25.00           C
ATOM     42  CA  VAL    42      25.098  33.993 103.343  1.00 25.00           C
ATOM     43  CA  ARG    43      24.508  32.735  99.864  1.00 25.00           C
ATOM     44  CA  PHE    44      25.715  30.542  97.024  1.00 25.00           C
ATOM     45  CA  VAL    45      25.700  28.978  93.526  1.00 25.00           C
ATOM     46  CA  THR    46      26.719  31.470  90.815  1.00 25.00           C
ATOM     47  CA  ASN    47      30.130  29.849  90.014  1.00 25.00           C
ATOM     48  CA  THR    48      29.303  26.334  88.795  1.00 25.00           C
ATOM     49  CA  THR    49      25.992  26.539  86.931  1.00 25.00           C
ATOM     50  CA  LYS    50      26.605  22.818  86.634  1.00 25.00           C
ATOM     51  CA  GLU    51      24.672  21.144  89.470  1.00 25.00           C
ATOM     52  CA  THR    52      21.712  23.141  90.739  1.00 25.00           C
ATOM     53  CA  LYS    53      20.512  22.602  94.326  1.00 25.00           C
ATOM     54  CA  LYS    54      20.577  18.901  95.307  1.00 25.00           C
ATOM     55  CA  ASP    55      24.402  18.897  95.134  1.00 25.00           C
ATOM     56  CA  LEU    56      24.530  22.028  97.336  1.00 25.00           C
ATOM     57  CA  LEU    57      22.180  20.372  99.868  1.00 25.00           C
ATOM     58  CA  GLU    58      24.391  17.244  99.910  1.00 25.00           C
ATOM     59  CA  ARG    59      27.493  19.414 100.487  1.00 25.00           C
ATOM     60  CA  LEU    60      25.726  21.216 103.368  1.00 25.00           C
ATOM     61  CA  LYS    61      24.759  17.848 104.914  1.00 25.00           C
ATOM     62  CA  LYS    62      28.382  16.643 104.620  1.00 25.00           C
ATOM     63  CA  LEU    63      30.596  19.277 106.351  1.00 25.00           C
ATOM     64  CA  GLU    64      29.360  19.881 109.935  1.00 25.00           C
ATOM     65  CA  PHE    65      29.457  23.534 108.841  1.00 25.00           C
ATOM     66  CA  GLU    66      25.642  23.112 109.029  1.00 25.00           C
ATOM     67  CA  ILE    67      22.734  24.331 106.900  1.00 25.00           C
ATOM     68  CA  SER    68      19.022  24.372 106.038  1.00 25.00           C
ATOM     69  CA  GLU    69      17.727  24.340 102.493  1.00 25.00           C
ATOM     70  CA  ASP    70      16.880  27.914 101.407  1.00 25.00           C
ATOM     71  CA  GLU    71      20.569  28.902 101.696  1.00 25.00           C
ATOM     72  CA  ILE    72      19.870  31.194  98.796  1.00 25.00           C
ATOM     73  CA  PHE    73      20.968  30.458  95.244  1.00 25.00           C
ATOM     74  CA  THR    74      20.775  27.984  92.404  1.00 25.00           C
ATOM    179  CA  LYS   179      26.366  37.529  91.107  1.00 25.00           C
ATOM    180  CA  PRO   180      27.842  41.008  91.541  1.00 25.00           C
ATOM    181  CA  GLU   181      26.779  42.865  88.408  1.00 25.00           C
ATOM    182  CA  LYS   182      23.374  41.380  88.851  1.00 25.00           C
ATOM    183  CA  THR   183      19.625  40.684  89.197  1.00 25.00           C
ATOM    184  CA  PHE   184      20.375  37.489  91.171  1.00 25.00           C
ATOM    185  CA  PHE   185      22.738  39.436  93.472  1.00 25.00           C
ATOM    186  CA  LEU   186      20.040  42.097  94.032  1.00 25.00           C
ATOM    187  CA  GLU   187      17.488  39.366  94.869  1.00 25.00           C
ATOM    188  CA  ALA   188      19.946  37.795  97.351  1.00 25.00           C
ATOM    189  CA  LEU   189      20.518  41.211  98.985  1.00 25.00           C
ATOM    190  CA  ARG   190      16.735  41.737  99.269  1.00 25.00           C
ATOM    191  CA  ASP   191      16.350  38.279 100.869  1.00 25.00           C
ATOM    192  CA  ALA   192      19.576  36.883 102.287  1.00 25.00           C
ATOM    193  CA  ASP   193      18.982  39.353 105.068  1.00 25.00           C
ATOM    194  CA  CYS   194      19.775  42.944 103.875  1.00 25.00           C
ATOM    195  CA  ALA   195      18.026  45.832 102.194  1.00 25.00           C
ATOM    196  CA  PRO   196      20.550  46.444  99.491  1.00 25.00           C
ATOM    197  CA  GLU   197      23.107  49.223 100.126  1.00 25.00           C
ATOM    198  CA  GLU   198      25.832  47.138  98.423  1.00 25.00           C
ATOM    199  CA  ALA   199      24.576  43.724  97.168  1.00 25.00           C
ATOM    200  CA  VAL   200      27.611  41.493  96.540  1.00 25.00           C
ATOM    201  CA  MET   201      30.766  39.296  96.443  1.00 25.00           C
ATOM    202  CA  ILE   202      32.241  36.934  93.915  1.00 25.00           C
ATOM    203  CA  GLY   203      34.252  34.769  96.237  1.00 25.00           C
ATOM    204  CA  ASP   204      37.039  35.455  93.678  1.00 25.00           C
ATOM    205  CA  ASP   205      39.297  33.145  91.653  1.00 25.00           C
ATOM    206  CA  CYS   206      41.652  36.125  91.433  1.00 25.00           C
ATOM    207  CA  ARG   207      41.006  39.124  89.210  1.00 25.00           C
ATOM    208  CA  ASP   208      38.096  38.982  86.723  1.00 25.00           C
ATOM    209  CA  ASP   209      35.698  38.009  89.546  1.00 25.00           C
ATOM    210  CA  VAL   210      36.977  40.927  91.671  1.00 25.00           C
ATOM    211  CA  ASP   211      36.468  43.325  88.729  1.00 25.00           C
ATOM    212  CA  GLY   212      32.903  42.012  88.244  1.00 25.00           C
ATOM    213  CA  ALA   213      32.186  42.509  91.973  1.00 25.00           C
ATOM    214  CA  GLN   214      33.536  46.088  91.781  1.00 25.00           C
ATOM    215  CA  ASN   215      31.320  46.787  88.738  1.00 25.00           C
ATOM    216  CA  ILE   216      28.400  49.037  89.697  1.00 25.00           C
ATOM    217  CA  GLY   217      27.890  49.421  93.404  1.00 25.00           C
ATOM    218  CA  MET   218      27.643  45.686  93.587  1.00 25.00           C
ATOM    219  CA  LEU   219      30.647  45.528  95.904  1.00 25.00           C
ATOM    220  CA  GLY   220      33.918  43.625  96.595  1.00 25.00           C
ATOM    221  CA  ILE   221      35.492  40.181  96.503  1.00 25.00           C
ATOM    222  CA  LEU   222      39.144  39.107  96.727  1.00 25.00           C
ATOM    223  CA  VAL   223      38.632  35.811  98.548  1.00 25.00           C
ATOM    224  CA  LYS   224      41.503  34.708  96.309  1.00 25.00           C
ATOM    225  CA  THR   225      40.254  31.195  96.707  1.00 25.00           C
ATOM    226  CA  GLY   226      43.781  29.791  96.382  1.00 25.00           C
ATOM    227  CA  LYS   227      45.867  31.091  93.420  1.00 25.00           C
ATOM    228  CA  TYR   228      46.305  34.661  94.519  1.00 25.00           C
ATOM    229  CA  LYS   229      49.884  35.403  93.536  1.00 25.00           C
ATOM    230  CA  ALA   230      51.750  37.641  95.977  1.00 25.00           C
ATOM    231  CA  ALA   231      53.798  39.709  93.489  1.00 25.00           C
ATOM    232  CA  ASP   232      50.867  39.695  91.025  1.00 25.00           C
ATOM    233  CA  GLU   233      48.493  40.837  93.805  1.00 25.00           C
ATOM    234  CA  GLU   234      50.906  43.660  94.741  1.00 25.00           C
ATOM    235  CA  LYS   235      49.247  46.802  93.449  1.00 25.00           C
ATOM    236  CA  ILE   236      46.016  47.875  91.915  1.00 25.00           C
ATOM    237  CA  ASN   237      44.117  51.000  90.981  1.00 25.00           C
ATOM    238  CA  PRO   238      41.124  50.153  93.171  1.00 25.00           C
ATOM    239  CA  PRO   239      43.550  49.840  96.114  1.00 25.00           C
ATOM    240  CA  PRO   240      41.888  46.492  97.017  1.00 25.00           C
ATOM    241  CA  TYR   241      39.373  46.148  99.849  1.00 25.00           C
ATOM    242  CA  LEU   242      40.735  42.663 100.542  1.00 25.00           C
ATOM    243  CA  THR   243      40.290  39.200 102.037  1.00 25.00           C
ATOM    244  CA  CYS   244      43.663  37.549 102.766  1.00 25.00           C
ATOM    245  CA  GLU   245      44.926  35.553 105.708  1.00 25.00           C
ATOM    246  CA  SER   246      42.904  32.689 104.260  1.00 25.00           C
ATOM    247  CA  PHE   247      39.976  35.005 105.015  1.00 25.00           C
ATOM    248  CA  PRO   248      37.203  34.622 107.631  1.00 25.00           C
ATOM    249  CA  HIS   249      39.282  36.609 110.160  1.00 25.00           C
ATOM    250  CA  ALA   250      39.851  39.367 107.565  1.00 25.00           C
ATOM    251  CA  VAL   251      36.094  39.488 106.834  1.00 25.00           C
ATOM    252  CA  ASP   252      35.349  39.753 110.581  1.00 25.00           C
ATOM    253  CA  HIS   253      37.883  42.605 110.909  1.00 25.00           C
ATOM    254  CA  ILE   254      36.268  44.416 107.946  1.00 25.00           C
ATOM    255  CA  LEU   255      32.812  44.000 109.545  1.00 25.00           C
ATOM    256  CA  GLN   256      34.147  45.400 112.852  1.00 25.00           C
ATOM    257  CA  HIS   257      35.658  48.394 111.002  1.00 25.00           C
ATOM    258  CA  LEU   258      32.316  49.020 109.236  1.00 25.00           C
ATOM    259  CA  LEU   259      29.263  50.282 111.160  1.00 25.00           C
TER
END
