
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  148 , name T0341TS393_1-D1
# Molecule2: number of CA atoms  148 ( 1158),  selected  148 , name T0341_D1.pdb
# PARAMETERS: T0341TS393_1-D1.T0341_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148         7 - 259         3.74     3.74
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        45 - 188         2.00     5.38
  LONGEST_CONTINUOUS_SEGMENT:    40        46 - 189         1.93     5.37
  LONGEST_CONTINUOUS_SEGMENT:    40        47 - 190         1.97     5.30
  LCS_AVERAGE:     15.99

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        27 - 40          0.86    10.07
  LONGEST_CONTINUOUS_SEGMENT:    14        53 - 66          0.96     9.07
  LCS_AVERAGE:      5.50

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     L       7     L       7      3    7  148     1    8   17   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K       8     K       8      5    7  148     3    5   13   29   52   78   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A       9     A       9      5   11  148     3    9   22   31   52   79   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V      10     V      10      5   11  148     3    7   16   27   39   53   69   85  111  125  134  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      11     L      11      5   11  148     4    7   16   27   39   54   69   85  110  125  134  140  142  144  146  148  148  148  148  148 
LCS_GDT     V      12     V      12      5   11  148     4    4    9   19   33   45   62   69   89  116  130  139  142  144  146  148  148  148  148  148 
LCS_GDT     D      13     D      13      6   11  148     4    8   16   27   46   63   93  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      14     L      14      6   11  148     5    8   17   28   47   74   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     N      15     N      15      6   11  148     5    9   22   31   53   79   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     G      16     G      16      6   11  148     5   11   21   26   45   73   95  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T      17     T      17      6   11  148     5   11   22   28   45   73   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      18     L      18      6   11  148     5   10   22   31   53   78   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     H      19     H      19      4   11  148     3    9   17   31   54   79   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I      20     I      20      4    5  148     3    4    4   12   17   27   52   66   90  107  124  134  141  144  146  148  148  148  148  148 
LCS_GDT     E      21     E      21      4   21  148     3    8   22   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D      22     D      22      4   21  148     3    7   19   40   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A      23     A      23      4   21  148     3    8   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A      24     A      24      3   21  148     1    6   15   30   52   74   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V      25     V      25      4   21  148     3    7   17   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     P      26     P      26      4   21  148     3    4   17   35   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     G      27     G      27     14   21  148     9   13   22   28   45   66   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A      28     A      28     14   21  148     9   13   22   29   48   78   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     Q      29     Q      29     14   21  148     9   13   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E      30     E      30     14   21  148     9   13   22   28   48   74   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A      31     A      31     14   21  148     9   13   22   28   48   68   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      32     L      32     14   21  148     9   13   22   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K      33     K      33     14   21  148     9   13   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     R      34     R      34     14   21  148     9   13   22   32   51   79   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      35     L      35     14   21  148     9   13   22   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     R      36     R      36     14   21  148     9   13   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A      37     A      37     14   21  148     7   13   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T      38     T      38     14   21  148     5   13   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     S      39     S      39     14   21  148     4    7   17   31   52   74   96  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V      40     V      40     14   21  148     4    7   17   31   53   79   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     M      41     M      41      9   21  148     4    9   17   37   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V      42     V      42      9   21  148     4    7   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     R      43     R      43      9   19  148     3    7   17   37   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     F      44     F      44      9   21  148     3    7   11   29   45   75   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V      45     V      45      9   40  148     4    7   11   27   48   75   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T      46     T      46      4   40  148     4   10   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     N      47     N      47      4   40  148     4   11   23   34   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T      48     T      48      4   40  148     4   12   23   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T      49     T      49      4   40  148     3   13   23   35   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K      50     K      50      4   40  148     4   13   23   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E      51     E      51      4   40  148     4    8   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T      52     T      52     12   40  148     4    6   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K      53     K      53     14   40  148     8   12   23   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K      54     K      54     14   40  148     9   13   23   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D      55     D      55     14   40  148     9   13   23   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      56     L      56     14   40  148     9   13   23   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      57     L      57     14   40  148     9   13   23   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E      58     E      58     14   40  148     9   13   23   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     R      59     R      59     14   40  148     9   13   23   35   59   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      60     L      60     14   40  148     9   12   23   33   54   77   95  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K      61     K      61     14   40  148     9   13   23   36   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K      62     K      62     14   40  148     9   13   23   35   59   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L      63     L      63     14   40  148     3   11   23   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E      64     E      64     14   40  148     3    6   22   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     F      65     F      65     14   40  148     3   13   23   34   51   77   95  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E      66     E      66     14   40  148     3   13   23   34   51   78   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I      67     I      67      7   40  148     3   12   23   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     S      68     S      68      7   40  148     3   12   23   33   51   80   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E      69     E      69      7   40  148     3    8   18   28   46   64   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D      70     D      70      7   40  148     4   13   23   36   62   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E      71     E      71      7   40  148     4   13   22   34   56   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I      72     I      72      7   40  148     4   11   23   34   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     F      73     F      73      6   40  148     4   13   23   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T      74     T      74      6   40  148     3   13   23   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K     179     K     179      6   40  148     3    6   18   29   42   54   80  105  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     P     180     P     180     11   40  148     3   11   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E     181     E     181     11   40  148     3    7   11   31   52   74   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K     182     K     182     11   40  148     4   10   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T     183     T     183     11   40  148     8   10   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     F     184     F     184     11   40  148     8   10   17   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     F     185     F     185     11   40  148     8   10   18   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     186     L     186     11   40  148     8   10   19   39   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E     187     E     187     11   40  148     8   10   17   32   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     188     A     188     11   40  148     8   10   17   32   62   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     189     L     189     11   40  148     8   10   17   32   60   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     R     190     R     190     11   40  148     8   10   17   31   54   78   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     191     D     191     10   17  148     3    7   16   31   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     192     A     192      5   14  148     4    9   22   30   52   74   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     193     D     193      5   14  148     3    8   14   28   51   77   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     C     194     C     194      5   11  148     4    5   13   21   41   62   86  108  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     195     A     195      5   11  148     4    5   12   21   33   55   84  105  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     P     196     P     196      5    8  148     4    4   22   30   38   46   58   88  115  124  134  140  142  144  146  148  148  148  148  148 
LCS_GDT     E     198     E     198      6   26  148     3    8   17   34   61   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     199     A     199      6   26  148     4    9   18   34   59   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V     200     V     200      6   26  148     4    9   17   33   57   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     M     201     M     201      6   26  148     4    9   18   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I     202     I     202      6   26  148     4    9   18   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     G     203     G     203      6   26  148     4    9   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     204     D     204      4   26  148     3    8   22   28   48   69   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     205     D     205      6   26  148     3    8   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     C     206     C     206      6   26  148     5    8   18   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     R     207     R     207      6   26  148     5    8   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     208     D     208      8   26  148     5   10   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     209     D     209      8   26  148     5   10   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V     210     V     210      8   26  148     4    7   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     211     D     211      8   26  148     4    9   18   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     G     212     G     212      8   26  148     4   11   22   37   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     213     A     213      8   26  148     4    7   11   31   56   80   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     Q     214     Q     214      8   26  148     4    7   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     N     215     N     215      8   26  148     4   10   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I     216     I     216      8   26  148     3   10   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     G     217     G     217      5   26  148     4    9   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     M     218     M     218      5   26  148     4    9   18   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     219     L     219      5   26  148     4    9   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     G     220     G     220      5   26  148     4   10   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I     221     I     221      4   26  148     3    8   18   34   59   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     222     L     222      4   26  148     3    9   18   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V     223     V     223      4   26  148     3    8   18   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K     224     K     224      4   16  148     3    3    5   25   46   63   88  110  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T     225     T     225      4   16  148     3    8   17   32   49   78   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     G     226     G     226      5   11  148     3    7   19   39   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K     227     K     227      6   11  148     3    6   15   30   53   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     Y     228     Y     228      6   11  148     3    6   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K     229     K     229      6   11  148     4    6   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     230     A     230      6   11  148     4    6   19   32   55   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     231     A     231      6   11  148     4    6   10   14   28   44   72  103  119  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     232     D     232      6   11  148     4    6   10   14   28   44   70  103  119  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E     233     E     233      6   11  148     4    5    6    7   20   42   87  106  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E     234     E     234      6   11  148     4    5    6   14   37   64   91  108  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     K     235     K     235      6   11  148     3    5    7   15   34   51   75   95  114  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I     236     I     236      6   11  148     0    3    6   13   28   48   66   85  113  124  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     N     237     N     237      4    9  148     0    3    6    7   12   33   42   57   77   95  109  129  140  144  146  148  148  148  148  148 
LCS_GDT     P     238     P     238      3    9  148     3    3    3    4   12   19   32   46   70   89   98  125  137  144  146  148  148  148  148  148 
LCS_GDT     P     239     P     239      4    9  148     3    3   15   31   56   80   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     P     240     P     240      4    9  148     3    7   14   38   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     Y     241     Y     241      4    9  148     3    7   19   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     242     L     242      4    9  148     3    6   18   34   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     T     243     T     243      3    9  148     3   10   22   40   64   81   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     C     244     C     244      4    9  148     3   10   22   36   58   80   98  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     E     245     E     245      4    9  148     3    4    5    9   13   34   56   70  102  120  126  136  142  144  146  148  148  148  148  148 
LCS_GDT     S     246     S     246      4   14  148     3    4    9   16   25   35   57   77   96  121  130  137  142  144  146  148  148  148  148  148 
LCS_GDT     F     247     F     247     12   14  148    10   11   11   12   12   19   26   39   59   81  114  131  138  143  146  148  148  148  148  148 
LCS_GDT     P     248     P     248     12   14  148    10   11   11   12   28   44   58   92  115  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     H     249     H     249     12   14  148    10   11   11   12   17   61   91  107  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     A     250     A     250     12   14  148    10   11   11   12   13   36   44   60  112  128  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     V     251     V     251     12   14  148    10   11   11   12   17   39   61   93  115  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     D     252     D     252     12   14  148    10   11   13   23   41   56   75   94  111  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     H     253     H     253     12   14  148    10   11   11   20   27   54   75   95  113  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     I     254     I     254     12   14  148    10   11   11   12   36   61   91  107  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     255     L     255     12   14  148    10   11   11   14   21   41   57   79  101  125  134  140  142  144  146  148  148  148  148  148 
LCS_GDT     Q     256     Q     256     12   14  148    10   11   11   18   31   54   65   76   93  105  123  137  142  144  146  148  148  148  148  148 
LCS_GDT     H     257     H     257     12   14  148     4   11   11   25   41   56   71   90  107  120  133  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     258     L     258     12   14  148     3    5   13   26   42   62   79  100  118  129  135  140  142  144  146  148  148  148  148  148 
LCS_GDT     L     259     L     259      3   14  148     3    8   17   31   52   78   97  111  121  129  135  140  142  144  146  148  148  148  148  148 
LCS_AVERAGE  LCS_A:  40.50  (   5.50   15.99  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     23     40     64     81     98    111    121    129    135    140    142    144    146    148    148    148    148    148 
GDT PERCENT_CA   6.76   8.78  15.54  27.03  43.24  54.73  66.22  75.00  81.76  87.16  91.22  94.59  95.95  97.30  98.65 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.14   0.65   1.04   1.67   2.00   2.19   2.46   2.67   2.87   3.07   3.24   3.39   3.47   3.54   3.65   3.74   3.74   3.74   3.74   3.74
GDT RMS_ALL_CA  24.01   7.50   7.30   3.95   3.88   3.89   3.84   3.83   3.80   3.76   3.75   3.75   3.75   3.75   3.74   3.74   3.74   3.74   3.74   3.74

#      Molecule1      Molecule2       DISTANCE
LGA    L       7      L       7          2.207
LGA    K       8      K       8          3.403
LGA    A       9      A       9          3.310
LGA    V      10      V      10          5.775
LGA    L      11      L      11          5.903
LGA    V      12      V      12          6.735
LGA    D      13      D      13          4.339
LGA    L      14      L      14          3.875
LGA    N      15      N      15          3.361
LGA    G      16      G      16          4.606
LGA    T      17      T      17          4.301
LGA    L      18      L      18          3.548
LGA    H      19      H      19          3.290
LGA    I      20      I      20          7.173
LGA    E      21      E      21          2.116
LGA    D      22      D      22          2.816
LGA    A      23      A      23          1.662
LGA    A      24      A      24          4.335
LGA    V      25      V      25          2.114
LGA    P      26      P      26          1.929
LGA    G      27      G      27          4.372
LGA    A      28      A      28          3.444
LGA    Q      29      Q      29          2.163
LGA    E      30      E      30          3.822
LGA    A      31      A      31          3.913
LGA    L      32      L      32          2.021
LGA    K      33      K      33          2.218
LGA    R      34      R      34          3.265
LGA    L      35      L      35          2.506
LGA    R      36      R      36          1.001
LGA    A      37      A      37          1.881
LGA    T      38      T      38          1.042
LGA    S      39      S      39          3.962
LGA    V      40      V      40          3.265
LGA    M      41      M      41          2.623
LGA    V      42      V      42          2.333
LGA    R      43      R      43          2.738
LGA    F      44      F      44          3.824
LGA    V      45      V      45          3.719
LGA    T      46      T      46          2.122
LGA    N      47      N      47          2.749
LGA    T      48      T      48          2.404
LGA    T      49      T      49          2.934
LGA    K      50      K      50          2.073
LGA    E      51      E      51          0.673
LGA    T      52      T      52          1.144
LGA    K      53      K      53          1.922
LGA    K      54      K      54          2.116
LGA    D      55      D      55          2.438
LGA    L      56      L      56          2.405
LGA    L      57      L      57          2.259
LGA    E      58      E      58          2.018
LGA    R      59      R      59          3.235
LGA    L      60      L      60          3.917
LGA    K      61      K      61          2.927
LGA    K      62      K      62          3.163
LGA    L      63      L      63          2.376
LGA    E      64      E      64          2.573
LGA    F      65      F      65          3.941
LGA    E      66      E      66          3.410
LGA    I      67      I      67          1.948
LGA    S      68      S      68          3.323
LGA    E      69      E      69          3.922
LGA    D      70      D      70          2.450
LGA    E      71      E      71          2.779
LGA    I      72      I      72          2.469
LGA    F      73      F      73          2.340
LGA    T      74      T      74          2.100
LGA    K     179      K     179          4.782
LGA    P     180      P     180          1.687
LGA    E     181      E     181          3.898
LGA    K     182      K     182          1.790
LGA    T     183      T     183          2.079
LGA    F     184      F     184          1.959
LGA    F     185      F     185          1.573
LGA    L     186      L     186          2.146
LGA    E     187      E     187          2.557
LGA    A     188      A     188          2.640
LGA    L     189      L     189          2.980
LGA    R     190      R     190          3.671
LGA    D     191      D     191          2.723
LGA    A     192      A     192          3.898
LGA    D     193      D     193          3.871
LGA    C     194      C     194          4.872
LGA    A     195      A     195          5.281
LGA    P     196      P     196          5.772
LGA    E     198      E     198          2.784
LGA    A     199      A     199          2.823
LGA    V     200      V     200          3.005
LGA    M     201      M     201          2.458
LGA    I     202      I     202          1.823
LGA    G     203      G     203          1.254
LGA    D     204      D     204          4.500
LGA    D     205      D     205          1.388
LGA    C     206      C     206          1.809
LGA    R     207      R     207          2.108
LGA    D     208      D     208          2.106
LGA    D     209      D     209          1.781
LGA    V     210      V     210          2.283
LGA    D     211      D     211          1.358
LGA    G     212      G     212          2.279
LGA    A     213      A     213          3.268
LGA    Q     214      Q     214          2.132
LGA    N     215      N     215          1.887
LGA    I     216      I     216          2.099
LGA    G     217      G     217          1.969
LGA    M     218      M     218          1.432
LGA    L     219      L     219          1.461
LGA    G     220      G     220          1.935
LGA    I     221      I     221          2.692
LGA    L     222      L     222          1.041
LGA    V     223      V     223          2.477
LGA    K     224      K     224          5.009
LGA    T     225      T     225          3.697
LGA    G     226      G     226          2.569
LGA    K     227      K     227          3.223
LGA    Y     228      Y     228          2.404
LGA    K     229      K     229          2.281
LGA    A     230      A     230          3.032
LGA    A     231      A     231          5.506
LGA    D     232      D     232          5.356
LGA    E     233      E     233          5.290
LGA    E     234      E     234          5.002
LGA    K     235      K     235          5.645
LGA    I     236      I     236          6.272
LGA    N     237      N     237          8.996
LGA    P     238      P     238          8.962
LGA    P     239      P     239          3.408
LGA    P     240      P     240          2.582
LGA    Y     241      Y     241          1.941
LGA    L     242      L     242          2.159
LGA    T     243      T     243          1.692
LGA    C     244      C     244          3.199
LGA    E     245      E     245          6.266
LGA    S     246      S     246          6.335
LGA    F     247      F     247          8.173
LGA    P     248      P     248          6.374
LGA    H     249      H     249          5.274
LGA    A     250      A     250          6.255
LGA    V     251      V     251          6.067
LGA    D     252      D     252          6.668
LGA    H     253      H     253          6.644
LGA    I     254      I     254          5.128
LGA    L     255      L     255          6.745
LGA    Q     256      Q     256          8.820
LGA    H     257      H     257          7.624
LGA    L     258      L     258          6.024
LGA    L     259      L     259          3.897

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  148    4.0    111    2.67    52.703    48.418     4.013

LGA_LOCAL      RMSD =  2.666  Number of atoms =  111  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.830  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  3.741  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.828182 * X  +  -0.071263 * Y  +   0.555910 * Z  +  28.348869
  Y_new =  -0.559043 * X  +  -0.034561 * Y  +   0.828418 * Z  +  33.559292
  Z_new =  -0.039822 * X  +  -0.996859 * Y  +  -0.068462 * Z  +  91.309280 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.639366    1.502227  [ DEG:   -93.9288     86.0712 ]
  Theta =   0.039833    3.101760  [ DEG:     2.2823    177.7177 ]
  Phi   =  -0.593766    2.547826  [ DEG:   -34.0203    145.9797 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS393_1-D1                               
REMARK     2: T0341_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS393_1-D1.T0341_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  148   4.0  111   2.67  48.418     3.74
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS393_1-D1
PFRMAT TS
TARGET T0341
MODEL 1
PARENT N/A
ATOM      7  CA  LEU     7      25.863  44.336 104.266  1.00 25.00           C
ATOM      8  CA  LYS     8      23.949  41.113 103.586  1.00 25.00           C
ATOM      9  CA  ALA     9      22.886  38.461 101.038  1.00 25.00           C
ATOM     10  CA  VAL    10      24.107  36.570  97.979  1.00 25.00           C
ATOM     11  CA  LEU    11      24.249  33.957  95.168  1.00 25.00           C
ATOM     12  CA  VAL    12      25.314  30.338  95.754  1.00 25.00           C
ATOM     13  CA  ASP    13      28.760  28.744  95.946  1.00 25.00           C
ATOM     14  CA  LEU    14      30.518  26.056  93.997  1.00 25.00           C
ATOM     15  CA  ASN    15      33.238  26.281  91.402  1.00 25.00           C
ATOM     16  CA  GLY    16      35.691  29.185  91.595  1.00 25.00           C
ATOM     17  CA  THR    17      34.254  30.604  94.820  1.00 25.00           C
ATOM     18  CA  LEU    18      33.714  27.951  97.424  1.00 25.00           C
ATOM     19  CA  HIS    19      33.238  24.262  98.401  1.00 25.00           C
ATOM     20  CA  ILE    20      32.803  20.670  99.658  1.00 25.00           C
ATOM     21  CA  GLU    21      35.673  19.595  97.332  1.00 25.00           C
ATOM     22  CA  ASP    22      39.067  18.062  97.955  1.00 25.00           C
ATOM     23  CA  ALA    23      40.370  20.013 101.019  1.00 25.00           C
ATOM     24  CA  ALA    24      39.823  23.501  99.519  1.00 25.00           C
ATOM     25  CA  VAL    25      37.881  24.562 102.543  1.00 25.00           C
ATOM     26  CA  PRO    26      39.161  25.655 106.002  1.00 25.00           C
ATOM     27  CA  GLY    27      38.493  29.335 105.318  1.00 25.00           C
ATOM     28  CA  ALA    28      35.089  28.991 103.598  1.00 25.00           C
ATOM     29  CA  GLN    29      33.648  27.322 106.730  1.00 25.00           C
ATOM     30  CA  GLU    30      35.029  30.155 108.905  1.00 25.00           C
ATOM     31  CA  ALA    31      33.465  32.749 106.562  1.00 25.00           C
ATOM     32  CA  LEU    32      30.105  30.924 106.743  1.00 25.00           C
ATOM     33  CA  LYS    33      30.311  30.872 110.567  1.00 25.00           C
ATOM     34  CA  ARG    34      31.076  34.625 110.600  1.00 25.00           C
ATOM     35  CA  LEU    35      28.079  35.281 108.307  1.00 25.00           C
ATOM     36  CA  ARG    36      25.831  33.210 110.613  1.00 25.00           C
ATOM     37  CA  ALA    37      27.084  35.182 113.648  1.00 25.00           C
ATOM     38  CA  THR    38      24.266  37.685 113.133  1.00 25.00           C
ATOM     39  CA  SER    39      20.948  36.361 112.006  1.00 25.00           C
ATOM     40  CA  VAL    40      22.359  36.560 108.498  1.00 25.00           C
ATOM     41  CA  MET    41      22.836  35.295 104.914  1.00 25.00           C
ATOM     42  CA  VAL    42      26.187  33.878 103.744  1.00 25.00           C
ATOM     43  CA  ARG    43      26.339  32.613 100.100  1.00 25.00           C
ATOM     44  CA  PHE    44      28.869  33.894  97.552  1.00 25.00           C
ATOM     45  CA  VAL    45      29.814  34.009  93.867  1.00 25.00           C
ATOM     46  CA  THR    46      29.890  31.027  91.541  1.00 25.00           C
ATOM     47  CA  ASN    47      26.745  29.283  90.253  1.00 25.00           C
ATOM     48  CA  THR    48      28.464  25.945  89.738  1.00 25.00           C
ATOM     49  CA  THR    49      25.452  25.276  87.485  1.00 25.00           C
ATOM     50  CA  LYS    50      26.631  21.613  87.299  1.00 25.00           C
ATOM     51  CA  GLU    51      24.236  20.478  90.077  1.00 25.00           C
ATOM     52  CA  THR    52      21.615  22.657  91.786  1.00 25.00           C
ATOM     53  CA  LYS    53      21.187  21.759  95.499  1.00 25.00           C
ATOM     54  CA  LYS    54      21.159  18.338  97.221  1.00 25.00           C
ATOM     55  CA  ASP    55      24.982  18.187  97.038  1.00 25.00           C
ATOM     56  CA  LEU    56      25.217  21.699  98.546  1.00 25.00           C
ATOM     57  CA  LEU    57      22.849  20.670 101.374  1.00 25.00           C
ATOM     58  CA  GLU    58      24.971  17.554 102.051  1.00 25.00           C
ATOM     59  CA  ARG    59      28.138  19.705 102.156  1.00 25.00           C
ATOM     60  CA  LEU    60      26.452  22.112 104.611  1.00 25.00           C
ATOM     61  CA  LYS    61      25.406  19.165 106.821  1.00 25.00           C
ATOM     62  CA  LYS    62      28.992  17.820 106.767  1.00 25.00           C
ATOM     63  CA  LEU    63      31.371  20.687 106.000  1.00 25.00           C
ATOM     64  CA  GLU    64      29.994  22.195 109.217  1.00 25.00           C
ATOM     65  CA  PHE    65      26.483  23.563 109.466  1.00 25.00           C
ATOM     66  CA  GLU    66      22.804  22.907 109.028  1.00 25.00           C
ATOM     67  CA  ILE    67      22.346  24.990 105.895  1.00 25.00           C
ATOM     68  CA  SER    68      18.700  24.032 105.999  1.00 25.00           C
ATOM     69  CA  GLU    69      16.212  24.218 103.075  1.00 25.00           C
ATOM     70  CA  ASP    70      15.519  27.491 101.210  1.00 25.00           C
ATOM     71  CA  GLU    71      19.270  28.258 101.112  1.00 25.00           C
ATOM     72  CA  ILE    72      20.564  27.171  97.666  1.00 25.00           C
ATOM     73  CA  PHE    73      20.260  30.539  95.924  1.00 25.00           C
ATOM     74  CA  THR    74      21.853  29.612  92.564  1.00 25.00           C
ATOM    179  CA  LYS   179      28.524  37.786  90.827  1.00 25.00           C
ATOM    180  CA  PRO   180      29.979  38.644  87.461  1.00 25.00           C
ATOM    181  CA  GLU   181      29.657  42.085  85.729  1.00 25.00           C
ATOM    182  CA  LYS   182      26.531  43.233  87.501  1.00 25.00           C
ATOM    183  CA  THR   183      22.811  42.618  86.824  1.00 25.00           C
ATOM    184  CA  PHE   184      22.939  39.405  88.903  1.00 25.00           C
ATOM    185  CA  PHE   185      24.638  41.296  91.768  1.00 25.00           C
ATOM    186  CA  LEU   186      21.945  44.014  91.603  1.00 25.00           C
ATOM    187  CA  GLU   187      19.206  41.340  91.706  1.00 25.00           C
ATOM    188  CA  ALA   188      20.874  39.712  94.745  1.00 25.00           C
ATOM    189  CA  LEU   189      21.059  43.113  96.496  1.00 25.00           C
ATOM    190  CA  ARG   190      17.350  43.721  95.759  1.00 25.00           C
ATOM    191  CA  ASP   191      16.478  40.271  97.174  1.00 25.00           C
ATOM    192  CA  ALA   192      16.494  37.740  99.939  1.00 25.00           C
ATOM    193  CA  ASP   193      15.154  40.628 102.101  1.00 25.00           C
ATOM    194  CA  CYS   194      18.773  41.775 102.520  1.00 25.00           C
ATOM    195  CA  ALA   195      19.649  45.470 101.918  1.00 25.00           C
ATOM    196  CA  PRO   196      19.506  47.505  98.759  1.00 25.00           C
ATOM    197  CA  GLU   197      22.917  49.165  99.281  1.00 25.00           C
ATOM    198  CA  GLU   198      24.574  45.725  99.576  1.00 25.00           C
ATOM    199  CA  ALA   199      25.424  42.142  98.830  1.00 25.00           C
ATOM    200  CA  VAL   200      28.774  40.318  98.344  1.00 25.00           C
ATOM    201  CA  MET   201      30.948  38.625  95.709  1.00 25.00           C
ATOM    202  CA  ILE   202      33.334  36.138  97.317  1.00 25.00           C
ATOM    203  CA  GLY   203      36.014  34.908  94.939  1.00 25.00           C
ATOM    204  CA  ASP   204      35.757  34.346  91.180  1.00 25.00           C
ATOM    205  CA  ASP   205      39.491  34.746  90.966  1.00 25.00           C
ATOM    206  CA  CYS   206      40.556  38.291  91.559  1.00 25.00           C
ATOM    207  CA  ARG   207      38.957  39.760  88.444  1.00 25.00           C
ATOM    208  CA  ASP   208      35.275  38.785  88.042  1.00 25.00           C
ATOM    209  CA  ASP   209      34.728  39.199  91.809  1.00 25.00           C
ATOM    210  CA  VAL   210      36.385  42.649  91.696  1.00 25.00           C
ATOM    211  CA  ASP   211      34.142  43.657  88.759  1.00 25.00           C
ATOM    212  CA  GLY   212      31.048  42.476  90.685  1.00 25.00           C
ATOM    213  CA  ALA   213      32.151  44.499  93.744  1.00 25.00           C
ATOM    214  CA  GLN   214      32.645  47.597  91.548  1.00 25.00           C
ATOM    215  CA  ASN   215      29.157  47.118  90.043  1.00 25.00           C
ATOM    216  CA  ILE   216      25.708  47.938  91.537  1.00 25.00           C
ATOM    217  CA  GLY   217      26.864  48.359  95.119  1.00 25.00           C
ATOM    218  CA  MET   218      28.295  44.870  95.687  1.00 25.00           C
ATOM    219  CA  LEU   219      31.004  44.872  98.354  1.00 25.00           C
ATOM    220  CA  GLY   220      34.761  44.319  98.123  1.00 25.00           C
ATOM    221  CA  ILE   221      35.365  40.912  96.680  1.00 25.00           C
ATOM    222  CA  LEU   222      38.654  39.045  96.226  1.00 25.00           C
ATOM    223  CA  VAL   223      40.767  35.835  96.441  1.00 25.00           C
ATOM    224  CA  LYS   224      40.266  32.250  95.421  1.00 25.00           C
ATOM    225  CA  THR   225      40.334  28.538  96.154  1.00 25.00           C
ATOM    226  CA  GLY   226      43.844  28.806  94.722  1.00 25.00           C
ATOM    227  CA  LYS   227      45.299  30.709  91.797  1.00 25.00           C
ATOM    228  CA  TYR   228      45.870  34.368  92.277  1.00 25.00           C
ATOM    229  CA  LYS   229      49.616  34.709  91.978  1.00 25.00           C
ATOM    230  CA  ALA   230      52.751  36.860  91.840  1.00 25.00           C
ATOM    231  CA  ALA   231      53.480  39.024  88.766  1.00 25.00           C
ATOM    232  CA  ASP   232      49.899  38.494  87.513  1.00 25.00           C
ATOM    233  CA  GLU   233      48.525  39.483  90.948  1.00 25.00           C
ATOM    234  CA  GLU   234      50.693  42.641  90.934  1.00 25.00           C
ATOM    235  CA  LYS   235      49.673  45.243  88.320  1.00 25.00           C
ATOM    236  CA  ILE   236      46.759  47.707  88.798  1.00 25.00           C
ATOM    237  CA  ASN   237      48.220  48.586  92.198  1.00 25.00           C
ATOM    238  CA  PRO   238      46.209  45.672  93.596  1.00 25.00           C
ATOM    239  CA  PRO   239      43.444  47.843  95.033  1.00 25.00           C
ATOM    240  CA  PRO   240      39.708  47.315  94.408  1.00 25.00           C
ATOM    241  CA  TYR   241      39.487  47.473  98.172  1.00 25.00           C
ATOM    242  CA  LEU   242      40.107  43.741  98.441  1.00 25.00           C
ATOM    243  CA  THR   243      42.149  42.022 101.158  1.00 25.00           C
ATOM    244  CA  CYS   244      41.364  40.658 104.662  1.00 25.00           C
ATOM    245  CA  GLU   245      44.867  40.755 106.044  1.00 25.00           C
ATOM    246  CA  SER   246      45.481  37.904 103.610  1.00 25.00           C
ATOM    247  CA  PHE   247      45.568  34.068 103.778  1.00 25.00           C
ATOM    248  CA  PRO   248      42.607  31.639 103.808  1.00 25.00           C
ATOM    249  CA  HIS   249      42.504  31.774 107.634  1.00 25.00           C
ATOM    250  CA  ALA   250      42.544  35.601 107.525  1.00 25.00           C
ATOM    251  CA  VAL   251      39.677  35.585 104.986  1.00 25.00           C
ATOM    252  CA  ASP   252      37.675  33.209 107.227  1.00 25.00           C
ATOM    253  CA  HIS   253      38.282  35.498 110.237  1.00 25.00           C
ATOM    254  CA  ILE   254      37.116  38.525 108.201  1.00 25.00           C
ATOM    255  CA  LEU   255      33.957  36.631 107.148  1.00 25.00           C
ATOM    256  CA  GLN   256      33.264  35.708 110.799  1.00 25.00           C
ATOM    257  CA  HIS   257      33.706  39.369 111.834  1.00 25.00           C
ATOM    258  CA  LEU   258      31.289  40.467 109.073  1.00 25.00           C
ATOM    259  CA  LEU   259      28.694  41.171 111.821  1.00 25.00           C
TER
END
