
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  148 , name T0341TS393_3-D1
# Molecule2: number of CA atoms  148 ( 1158),  selected  148 , name T0341_D1.pdb
# PARAMETERS: T0341TS393_3-D1.T0341_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148         7 - 259         3.61     3.61
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        55 - 190         1.98     5.20
  LONGEST_CONTINUOUS_SEGMENT:    32        56 - 191         1.98     4.93
  LONGEST_CONTINUOUS_SEGMENT:    32       198 - 229         1.98     6.92
  LCS_AVERAGE:     16.67

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        49 - 62          0.94    15.55
  LONGEST_CONTINUOUS_SEGMENT:    14        53 - 66          0.95    11.70
  LCS_AVERAGE:      5.62

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     L       7     L       7      3    7  148     2    5    9   15   22   56   93  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K       8     K       8      3    7  148     0    4    9   15   19   25   38   62  115  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A       9     A       9      4   11  148     0    6   16   32   55   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V      10     V      10      4   11  148     3    7   16   26   36   55   75  102  122  132  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      11     L      11      4   11  148     3    6   13   26   36   55   70  102  122  132  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V      12     V      12      4   11  148     3    6    9   18   27   44   59   73   98  124  135  141  143  147  148  148  148  148  148  148 
LCS_GDT     D      13     D      13      6   11  148     3    4   11   17   31   48   72  101  123  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      14     L      14      6   11  148     3    6   11   18   36   56   79  108  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     N      15     N      15      6   11  148     3    5   13   29   47   66   96  112  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     G      16     G      16      6   11  148     3   12   13   22   33   46   70  104  122  132  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T      17     T      17      6   11  148     3   12   14   24   36   56   88  109  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      18     L      18      6   11  148     3    7   16   29   47   63   88  111  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     H      19     H      19      4   11  148     3    7   12   29   48   78  101  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     I      20     I      20      4    7  148     3    4    6    7   15   25   55   70  100  112  133  139  143  147  148  148  148  148  148  148 
LCS_GDT     E      21     E      21      4    7  148     3    6   24   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D      22     D      22      4    7  148     3    5   13   28   48   71   95  112  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A      23     A      23      4   15  148     4   14   26   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A      24     A      24      3   15  148     3    4   13   31   55   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V      25     V      25      4   15  148     3    7   22   39   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     P      26     P      26      4   15  148     3    4    9   21   47   79  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     G      27     G      27     13   16  148     9   11   12   18   23   30   49   62   89  114  133  140  143  147  148  148  148  148  148  148 
LCS_GDT     A      28     A      28     13   16  148     9   11   12   18   37   58   78  104  123  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     Q      29     Q      29     13   16  148     9   11   13   31   55   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E      30     E      30     13   16  148     9   11   12   18   29   44   62   94  118  131  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A      31     A      31     13   16  148     9   11   12   18   28   44   62   89  118  132  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      32     L      32     13   16  148     9   11   21   37   59   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K      33     K      33     13   16  148     9   11   12   26   43   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     R      34     R      34     13   16  148     9   11   12   18   34   55   77  108  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      35     L      35     13   16  148     9   11   19   32   54   79  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     R      36     R      36     13   16  148     9   13   26   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A      37     A      37     13   16  148     8   11   12   26   47   79  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T      38     T      38     13   16  148     3   14   26   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     S      39     S      39     13   16  148     3    8   19   35   55   74  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V      40     V      40      6   16  148     3    8   20   37   61   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     M      41     M      41      6   16  148     3    8   20   36   63   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V      42     V      42      6   16  148     4    8   18   37   59   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     R      43     R      43      4   15  148     3    4    9   18   36   71   93  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     F      44     F      44      5   15  148     3    6   12   20   34   60   90  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V      45     V      45      5   15  148     3    8   14   28   49   78  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T      46     T      46      5   31  148     3    9   24   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     N      47     N      47      5   31  148     3    8   26   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T      48     T      48      5   31  148     6   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T      49     T      49     14   31  148     3   10   15   40   61   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K      50     K      50     14   31  148     5   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E      51     E      51     14   31  148     4    9   21   42   63   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T      52     T      52     14   31  148     4    9   25   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K      53     K      53     14   31  148     8   11   15   25   43   66   93  111  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K      54     K      54     14   31  148     9   11   15   25   43   68   93  110  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D      55     D      55     14   32  148     9   11   15   36   60   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      56     L      56     14   32  148     9   11   20   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      57     L      57     14   32  148     9   11   15   26   57   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E      58     E      58     14   32  148     9   11   19   41   63   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     R      59     R      59     14   32  148     9   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      60     L      60     14   32  148     9   11   16   26   59   80  100  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K      61     K      61     14   32  148     9   11   20   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K      62     K      62     14   32  148     9   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L      63     L      63     14   32  148     3    8   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E      64     E      64     14   32  148     3   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     F      65     F      65     14   32  148     5   11   18   32   64   80  101  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E      66     E      66     14   32  148     3   11   16   27   54   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     I      67     I      67     12   32  148     3   10   18   38   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     S      68     S      68      6   32  148     2    6   10   26   59   79  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E      69     E      69      6   32  148     4    8   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D      70     D      70      5   32  148     5   10   24   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E      71     E      71      5   32  148     4    7   20   37   61   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     I      72     I      72      5   32  148     4    9   20   43   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     F      73     F      73      5   32  148     3    6   11   25   50   79  101  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T      74     T      74      4   32  148     2    9   21   42   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K     179     K     179      4   32  148     2   10   22   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     P     180     P     180      4   32  148     6   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E     181     E     181     10   32  148     4    5   10   22   44   66   91  109  122  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K     182     K     182     10   32  148     6   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T     183     T     183     10   32  148     9   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     F     184     F     184     10   32  148     9   10   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     F     185     F     185     10   32  148     9   10   30   43   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     186     L     186     10   32  148     9   11   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E     187     E     187     10   32  148     9   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     188     A     188     10   32  148     9   10   30   41   64   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     189     L     189     10   32  148     9   10   13   41   64   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     R     190     R     190     10   32  148     9   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     191     D     191     10   32  148     3    6   26   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     192     A     192      6   15  148     3    6   13   29   54   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     193     D     193      6   12  148     3    5    7   28   43   63   87  109  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     C     194     C     194      6   12  148     3    9   15   33   54   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     195     A     195      6   12  148     3    5   13   28   43   71   95  112  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     P     196     P     196      6   12  148     3    5    7    9   21   37   52   73   97  119  136  140  143  147  148  148  148  148  148  148 
LCS_GDT     E     198     E     198      6   32  148     4    9   18   37   61   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     199     A     199      4   32  148     4    9   16   32   56   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V     200     V     200      8   32  148     4    8   14   24   40   63   90  110  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     M     201     M     201      8   32  148     3    8   15   23   40   63   94  110  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     I     202     I     202      8   32  148     4   12   16   26   49   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     G     203     G     203      8   32  148     4   12   18   36   61   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     204     D     204      8   32  148     3   12   16   32   59   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     205     D     205      8   32  148     3    7   26   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     C     206     C     206      8   32  148     4   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     R     207     R     207      8   32  148     4   12   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     208     D     208      8   32  148     4    5   16   26   40   62   86  110  123  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     209     D     209      8   32  148     4   12   16   31   55   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V     210     V     210      8   32  148     6   12   19   43   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     211     D     211      8   32  148     6    8   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     G     212     G     212      8   32  148     9   10   15   35   60   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     213     A     213      8   32  148     6    8   11   28   60   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     Q     214     Q     214      8   32  148     6   12   17   41   61   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     N     215     N     215      8   32  148     6    8   16   35   60   80  100  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     I     216     I     216      3   32  148     3   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     G     217     G     217      3   32  148     4    8   21   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     M     218     M     218      3   32  148     5   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     219     L     219      4   32  148     3    9   16   38   61   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     G     220     G     220      4   32  148     3    9   19   40   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     I     221     I     221      4   32  148     3    7   14   30   55   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     222     L     222      4   32  148     3   12   18   42   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V     223     V     223      4   32  148     4   12   16   26   46   79  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K     224     K     224      4   32  148     3    3   11   24   46   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T     225     T     225      5   32  148     3    8   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     G     226     G     226      5   32  148     3    8   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K     227     K     227      5   32  148     3   10   15   22   63   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     Y     228     Y     228      5   32  148     3   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     K     229     K     229      5   32  148     3   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     230     A     230      3    9  148     3    4   11   26   50   79  101  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     231     A     231      6    9  148     5    6    6    7   11   19   63  101  122  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     232     D     232      6    9  148     5    6    6    6    8   10   14   34   61  121  132  141  143  147  148  148  148  148  148  148 
LCS_GDT     E     233     E     233      6    9  148     5    6    6    6   13   24   69  102  122  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E     234     E     234      6   26  148     5    6    6    6   26   39   59   86  101  113  132  137  143  147  148  148  148  148  148  148 
LCS_GDT     K     235     K     235      6   26  148     5    8   15   18   25   34   43   59   75  100  122  132  139  145  148  148  148  148  148  148 
LCS_GDT     I     236     I     236      6   26  148     3   10   15   20   28   36   50   64   85  111  126  137  143  147  148  148  148  148  148  148 
LCS_GDT     N     237     N     237      6   26  148     3    7   15   22   29   41   52   65   94  113  128  137  143  147  148  148  148  148  148  148 
LCS_GDT     P     238     P     238      7   26  148     2    7   17   27   39   55   76  101  119  131  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     P     239     P     239      7   26  148     3    8   17   28   39   66   95  113  122  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     P     240     P     240      7   26  148     3   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     Y     241     Y     241      7   26  148     3    8   17   37   64   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     242     L     242      7   26  148     3   11   24   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     T     243     T     243      7   26  148     3   11   25   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     C     244     C     244      7   26  148     3    9   22   42   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     E     245     E     245     13   26  148     3   10   18   37   61   80  100  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     S     246     S     246     13   26  148     3   11   26   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     F     247     F     247     13   26  148    10   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     P     248     P     248     13   26  148    10   11   17   41   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     H     249     H     249     13   26  148    10   11   20   41   64   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     A     250     A     250     13   26  148    10   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     V     251     V     251     13   26  148    10   11   17   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     D     252     D     252     13   26  148    10   11   21   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     H     253     H     253     13   26  148    10   14   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     I     254     I     254     13   26  148    10   11   30   42   62   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     255     L     255     13   26  148    10   11   17   29   55   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     Q     256     Q     256     13   26  148    10   11   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     H     257     H     257     13   26  148     5   13   30   45   64   81  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     258     L     258     13   26  148     3    7   30   43   64   80  102  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_GDT     L     259     L     259      5   26  148     3    4   12   41   58   75   94  113  124  133  137  141  143  147  148  148  148  148  148  148 
LCS_AVERAGE  LCS_A:  40.76  (   5.62   16.67  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     14     30     45     64     81    102    113    124    133    137    141    143    147    148    148    148    148    148    148 
GDT PERCENT_CA   6.76   9.46  20.27  30.41  43.24  54.73  68.92  76.35  83.78  89.86  92.57  95.27  96.62  99.32 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.14   0.72   1.10   1.52   1.82   2.19   2.47   2.63   2.87   3.07   3.16   3.28   3.35   3.55   3.61   3.61   3.61   3.61   3.61   3.61
GDT RMS_ALL_CA  11.03   3.88   4.08   3.77   3.76   3.69   3.66   3.65   3.66   3.63   3.63   3.63   3.63   3.61   3.61   3.61   3.61   3.61   3.61   3.61

#      Molecule1      Molecule2       DISTANCE
LGA    L       7      L       7          4.129
LGA    K       8      K       8          5.146
LGA    A       9      A       9          3.219
LGA    V      10      V      10          5.502
LGA    L      11      L      11          5.608
LGA    V      12      V      12          6.678
LGA    D      13      D      13          5.143
LGA    L      14      L      14          4.954
LGA    N      15      N      15          4.399
LGA    G      16      G      16          5.726
LGA    T      17      T      17          4.790
LGA    L      18      L      18          4.526
LGA    H      19      H      19          3.620
LGA    I      20      I      20          6.446
LGA    E      21      E      21          1.604
LGA    D      22      D      22          4.675
LGA    A      23      A      23          1.590
LGA    A      24      A      24          3.793
LGA    V      25      V      25          2.130
LGA    P      26      P      26          3.420
LGA    G      27      G      27          7.604
LGA    A      28      A      28          5.257
LGA    Q      29      Q      29          3.051
LGA    E      30      E      30          6.152
LGA    A      31      A      31          5.906
LGA    L      32      L      32          2.306
LGA    K      33      K      33          3.592
LGA    R      34      R      34          5.044
LGA    L      35      L      35          3.136
LGA    R      36      R      36          1.411
LGA    A      37      A      37          3.521
LGA    T      38      T      38          0.756
LGA    S      39      S      39          3.598
LGA    V      40      V      40          2.612
LGA    M      41      M      41          2.437
LGA    V      42      V      42          2.455
LGA    R      43      R      43          3.979
LGA    F      44      F      44          3.897
LGA    V      45      V      45          3.105
LGA    T      46      T      46          1.449
LGA    N      47      N      47          1.545
LGA    T      48      T      48          0.891
LGA    T      49      T      49          3.503
LGA    K      50      K      50          1.887
LGA    E      51      E      51          2.226
LGA    T      52      T      52          1.758
LGA    K      53      K      53          4.800
LGA    K      54      K      54          5.041
LGA    D      55      D      55          3.761
LGA    L      56      L      56          2.593
LGA    L      57      L      57          3.379
LGA    E      58      E      58          2.984
LGA    R      59      R      59          2.916
LGA    L      60      L      60          3.578
LGA    K      61      K      61          2.554
LGA    K      62      K      62          3.081
LGA    L      63      L      63          2.725
LGA    E      64      E      64          2.772
LGA    F      65      F      65          3.369
LGA    E      66      E      66          3.315
LGA    I      67      I      67          2.642
LGA    S      68      S      68          3.555
LGA    E      69      E      69          2.707
LGA    D      70      D      70          1.428
LGA    E      71      E      71          2.389
LGA    I      72      I      72          2.328
LGA    F      73      F      73          3.940
LGA    T      74      T      74          2.381
LGA    K     179      K     179          2.592
LGA    P     180      P     180          1.007
LGA    E     181      E     181          4.402
LGA    K     182      K     182          1.591
LGA    T     183      T     183          0.893
LGA    F     184      F     184          2.246
LGA    F     185      F     185          2.391
LGA    L     186      L     186          1.407
LGA    E     187      E     187          1.441
LGA    A     188      A     188          2.959
LGA    L     189      L     189          2.888
LGA    R     190      R     190          1.476
LGA    D     191      D     191          1.329
LGA    A     192      A     192          3.848
LGA    D     193      D     193          5.328
LGA    C     194      C     194          3.984
LGA    A     195      A     195          5.009
LGA    P     196      P     196          6.695
LGA    E     198      E     198          2.800
LGA    A     199      A     199          3.313
LGA    V     200      V     200          5.170
LGA    M     201      M     201          4.646
LGA    I     202      I     202          3.576
LGA    G     203      G     203          2.537
LGA    D     204      D     204          2.812
LGA    D     205      D     205          1.309
LGA    C     206      C     206          0.267
LGA    R     207      R     207          1.862
LGA    D     208      D     208          4.584
LGA    D     209      D     209          3.122
LGA    V     210      V     210          2.024
LGA    D     211      D     211          2.057
LGA    G     212      G     212          3.261
LGA    A     213      A     213          3.098
LGA    Q     214      Q     214          2.826
LGA    N     215      N     215          3.362
LGA    I     216      I     216          1.364
LGA    G     217      G     217          2.137
LGA    M     218      M     218          1.036
LGA    L     219      L     219          3.240
LGA    G     220      G     220          2.605
LGA    I     221      I     221          3.530
LGA    L     222      L     222          1.935
LGA    V     223      V     223          3.613
LGA    K     224      K     224          3.814
LGA    T     225      T     225          1.528
LGA    G     226      G     226          1.536
LGA    K     227      K     227          3.012
LGA    Y     228      Y     228          1.269
LGA    K     229      K     229          1.695
LGA    A     230      A     230          3.988
LGA    A     231      A     231          4.946
LGA    D     232      D     232          5.983
LGA    E     233      E     233          4.737
LGA    E     234      E     234          7.080
LGA    K     235      K     235          8.585
LGA    I     236      I     236          7.601
LGA    N     237      N     237          7.703
LGA    P     238      P     238          5.062
LGA    P     239      P     239          3.886
LGA    P     240      P     240          1.395
LGA    Y     241      Y     241          2.314
LGA    L     242      L     242          1.232
LGA    T     243      T     243          1.380
LGA    C     244      C     244          1.980
LGA    E     245      E     245          3.488
LGA    S     246      S     246          1.074
LGA    F     247      F     247          1.319
LGA    P     248      P     248          2.552
LGA    H     249      H     249          2.791
LGA    A     250      A     250          1.927
LGA    V     251      V     251          2.320
LGA    D     252      D     252          2.202
LGA    H     253      H     253          1.504
LGA    I     254      I     254          2.831
LGA    L     255      L     255          3.443
LGA    Q     256      Q     256          1.830
LGA    H     257      H     257          2.085
LGA    L     258      L     258          2.906
LGA    L     259      L     259          3.841

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  148    4.0    113    2.63    54.054    49.852     4.136

LGA_LOCAL      RMSD =  2.632  Number of atoms =  113  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.615  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  3.607  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.952143 * X  +  -0.077845 * Y  +   0.295575 * Z  +  28.277674
  Y_new =  -0.301454 * X  +  -0.398927 * Y  +   0.866016 * Z  +  33.401836
  Z_new =   0.050498 * X  +  -0.913673 * Y  +  -0.403302 * Z  +  91.404129 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.986482    1.155111  [ DEG:  -113.8170     66.1830 ]
  Theta =  -0.050520   -3.091073  [ DEG:    -2.8946   -177.1054 ]
  Phi   =  -0.306621    2.834972  [ DEG:   -17.5681    162.4319 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS393_3-D1                               
REMARK     2: T0341_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS393_3-D1.T0341_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  148   4.0  113   2.63  49.852     3.61
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS393_3-D1
PFRMAT TS
TARGET T0341
MODEL 3
PARENT N/A
ATOM      7  CA  LEU     7      27.437  44.556 102.444  1.00 25.00           C
ATOM      8  CA  LYS     8      25.790  41.203 102.162  1.00 25.00           C
ATOM      9  CA  ALA     9      23.247  38.860 100.621  1.00 25.00           C
ATOM     10  CA  VAL    10      24.856  36.989  97.691  1.00 25.00           C
ATOM     11  CA  LEU    11      25.039  35.036  94.411  1.00 25.00           C
ATOM     12  CA  VAL    12      24.960  31.317  95.447  1.00 25.00           C
ATOM     13  CA  ASP    13      27.714  28.686  95.618  1.00 25.00           C
ATOM     14  CA  LEU    14      29.303  26.400  93.022  1.00 25.00           C
ATOM     15  CA  ASN    15      32.277  26.048  90.711  1.00 25.00           C
ATOM     16  CA  GLY    16      33.495  29.447  91.954  1.00 25.00           C
ATOM     17  CA  THR    17      32.635  29.970  95.607  1.00 25.00           C
ATOM     18  CA  LEU    18      32.351  26.498  97.177  1.00 25.00           C
ATOM     19  CA  HIS    19      33.774  22.944  97.600  1.00 25.00           C
ATOM     20  CA  ILE    20      34.266  19.587  99.395  1.00 25.00           C
ATOM     21  CA  GLU    21      36.636  18.933  96.480  1.00 25.00           C
ATOM     22  CA  ASP    22      40.416  19.432  96.961  1.00 25.00           C
ATOM     23  CA  ALA    23      40.301  19.954 100.728  1.00 25.00           C
ATOM     24  CA  ALA    24      40.029  23.750 100.513  1.00 25.00           C
ATOM     25  CA  VAL    25      37.613  24.703 103.254  1.00 25.00           C
ATOM     26  CA  PRO    26      38.870  27.787 105.005  1.00 25.00           C
ATOM     27  CA  GLY    27      37.254  29.639 102.120  1.00 25.00           C
ATOM     28  CA  ALA    28      33.654  28.332 102.093  1.00 25.00           C
ATOM     29  CA  GLN    29      33.927  27.431 105.805  1.00 25.00           C
ATOM     30  CA  GLU    30      35.264  30.933 106.582  1.00 25.00           C
ATOM     31  CA  ALA    31      32.360  32.500 104.640  1.00 25.00           C
ATOM     32  CA  LEU    32      29.864  30.336 106.575  1.00 25.00           C
ATOM     33  CA  LYS    33      31.468  31.402 109.885  1.00 25.00           C
ATOM     34  CA  ARG    34      31.240  35.079 108.840  1.00 25.00           C
ATOM     35  CA  LEU    35      27.548  34.617 107.932  1.00 25.00           C
ATOM     36  CA  ARG    36      26.892  32.983 111.333  1.00 25.00           C
ATOM     37  CA  ALA    37      28.645  35.894 113.098  1.00 25.00           C
ATOM     38  CA  THR    38      25.548  37.938 113.772  1.00 25.00           C
ATOM     39  CA  SER    39      22.650  36.573 111.647  1.00 25.00           C
ATOM     40  CA  VAL    40      22.605  37.147 107.852  1.00 25.00           C
ATOM     41  CA  MET    41      22.309  35.408 104.481  1.00 25.00           C
ATOM     42  CA  VAL    42      24.619  33.998 101.769  1.00 25.00           C
ATOM     43  CA  ARG    43      27.338  31.848 100.185  1.00 25.00           C
ATOM     44  CA  PHE    44      29.010  33.793  97.415  1.00 25.00           C
ATOM     45  CA  VAL    45      29.408  33.302  93.613  1.00 25.00           C
ATOM     46  CA  THR    46      27.993  30.855  91.076  1.00 25.00           C
ATOM     47  CA  ASN    47      29.836  29.599  87.990  1.00 25.00           C
ATOM     48  CA  THR    48      27.244  26.752  88.176  1.00 25.00           C
ATOM     49  CA  THR    49      24.285  24.363  87.935  1.00 25.00           C
ATOM     50  CA  LYS    50      26.446  21.312  87.333  1.00 25.00           C
ATOM     51  CA  GLU    51      25.374  19.066  90.191  1.00 25.00           C
ATOM     52  CA  THR    52      22.283  20.216  92.061  1.00 25.00           C
ATOM     53  CA  LYS    53      21.410  18.848  95.477  1.00 25.00           C
ATOM     54  CA  LYS    54      22.457  15.682  97.358  1.00 25.00           C
ATOM     55  CA  ASP    55      26.140  16.678  97.038  1.00 25.00           C
ATOM     56  CA  LEU    56      25.335  20.178  98.369  1.00 25.00           C
ATOM     57  CA  LEU    57      23.452  18.644 101.330  1.00 25.00           C
ATOM     58  CA  GLU    58      26.431  16.356 102.073  1.00 25.00           C
ATOM     59  CA  ARG    59      28.801  19.363 101.956  1.00 25.00           C
ATOM     60  CA  LEU    60      26.519  21.285 104.357  1.00 25.00           C
ATOM     61  CA  LYS    61      26.462  18.289 106.741  1.00 25.00           C
ATOM     62  CA  LYS    62      30.284  18.085 106.615  1.00 25.00           C
ATOM     63  CA  LEU    63      31.676  21.525 105.735  1.00 25.00           C
ATOM     64  CA  GLU    64      30.426  22.643 109.118  1.00 25.00           C
ATOM     65  CA  PHE    65      26.775  23.860 108.928  1.00 25.00           C
ATOM     66  CA  GLU    66      23.308  22.342 109.137  1.00 25.00           C
ATOM     67  CA  ILE    67      21.930  24.577 106.330  1.00 25.00           C
ATOM     68  CA  SER    68      18.087  24.664 106.303  1.00 25.00           C
ATOM     69  CA  GLU    69      18.288  26.433 102.979  1.00 25.00           C
ATOM     70  CA  ASP    70      16.026  28.321 100.533  1.00 25.00           C
ATOM     71  CA  GLU    71      19.076  30.089  99.038  1.00 25.00           C
ATOM     72  CA  ILE    72      21.781  27.377  99.125  1.00 25.00           C
ATOM     73  CA  PHE    73      21.922  27.261  95.358  1.00 25.00           C
ATOM     74  CA  THR    74      23.990  27.545  92.199  1.00 25.00           C
ATOM    179  CA  LYS   179      28.582  35.767  89.091  1.00 25.00           C
ATOM    180  CA  PRO   180      30.167  38.402  86.850  1.00 25.00           C
ATOM    181  CA  GLU   181      27.979  40.867  88.635  1.00 25.00           C
ATOM    182  CA  LYS   182      25.102  43.184  87.701  1.00 25.00           C
ATOM    183  CA  THR   183      22.216  40.675  87.489  1.00 25.00           C
ATOM    184  CA  PHE   184      23.739  38.642  90.355  1.00 25.00           C
ATOM    185  CA  PHE   185      24.084  41.823  92.460  1.00 25.00           C
ATOM    186  CA  LEU   186      20.428  42.716  91.752  1.00 25.00           C
ATOM    187  CA  GLU   187      19.341  39.192  92.782  1.00 25.00           C
ATOM    188  CA  ALA   188      21.361  39.488  96.021  1.00 25.00           C
ATOM    189  CA  LEU   189      19.734  42.876  96.756  1.00 25.00           C
ATOM    190  CA  ARG   190      16.266  41.370  96.150  1.00 25.00           C
ATOM    191  CA  ASP   191      17.085  38.471  98.514  1.00 25.00           C
ATOM    192  CA  ALA   192      17.924  37.320 102.091  1.00 25.00           C
ATOM    193  CA  ASP   193      15.845  39.980 103.750  1.00 25.00           C
ATOM    194  CA  CYS   194      17.597  42.511 101.546  1.00 25.00           C
ATOM    195  CA  ALA   195      18.009  46.243 100.959  1.00 25.00           C
ATOM    196  CA  PRO   196      18.330  48.429  97.893  1.00 25.00           C
ATOM    197  CA  GLU   197      22.011  48.954  96.974  1.00 25.00           C
ATOM    198  CA  GLU   198      23.062  46.403  99.631  1.00 25.00           C
ATOM    199  CA  ALA   199      24.495  43.462  97.830  1.00 25.00           C
ATOM    200  CA  VAL   200      26.992  41.411  95.883  1.00 25.00           C
ATOM    201  CA  MET   201      29.313  39.548  93.514  1.00 25.00           C
ATOM    202  CA  ILE   202      31.181  37.533  96.176  1.00 25.00           C
ATOM    203  CA  GLY   203      33.840  35.818  93.991  1.00 25.00           C
ATOM    204  CA  ASP   204      36.560  33.462  92.758  1.00 25.00           C
ATOM    205  CA  ASP   205      39.481  34.996  90.863  1.00 25.00           C
ATOM    206  CA  CYS   206      39.131  38.777  90.752  1.00 25.00           C
ATOM    207  CA  ARG   207      38.358  40.715  87.547  1.00 25.00           C
ATOM    208  CA  ASP   208      34.781  41.317  86.318  1.00 25.00           C
ATOM    209  CA  ASP   209      33.400  40.170  89.702  1.00 25.00           C
ATOM    210  CA  VAL   210      35.809  42.533  91.514  1.00 25.00           C
ATOM    211  CA  ASP   211      34.705  45.426  89.260  1.00 25.00           C
ATOM    212  CA  GLY   212      31.031  44.626  89.989  1.00 25.00           C
ATOM    213  CA  ALA   213      31.763  44.578  93.748  1.00 25.00           C
ATOM    214  CA  GLN   214      33.535  47.962  93.471  1.00 25.00           C
ATOM    215  CA  ASN   215      30.540  49.401  91.566  1.00 25.00           C
ATOM    216  CA  ILE   216      27.315  48.306  89.941  1.00 25.00           C
ATOM    217  CA  GLY   217      26.186  47.839  93.532  1.00 25.00           C
ATOM    218  CA  MET   218      28.319  46.996  96.574  1.00 25.00           C
ATOM    219  CA  LEU   219      29.399  44.373  99.163  1.00 25.00           C
ATOM    220  CA  GLY   220      32.152  41.891  98.494  1.00 25.00           C
ATOM    221  CA  ILE   221      34.862  40.953  96.003  1.00 25.00           C
ATOM    222  CA  LEU   222      37.670  38.338  96.177  1.00 25.00           C
ATOM    223  CA  VAL   223      37.232  34.852  97.632  1.00 25.00           C
ATOM    224  CA  LYS   224      40.737  34.970  96.098  1.00 25.00           C
ATOM    225  CA  THR   225      41.540  31.793  98.028  1.00 25.00           C
ATOM    226  CA  GLY   226      41.182  30.209  94.574  1.00 25.00           C
ATOM    227  CA  LYS   227      44.679  30.357  93.198  1.00 25.00           C
ATOM    228  CA  TYR   228      44.809  34.135  93.073  1.00 25.00           C
ATOM    229  CA  LYS   229      48.557  34.922  92.896  1.00 25.00           C
ATOM    230  CA  ALA   230      49.560  35.429  89.330  1.00 25.00           C
ATOM    231  CA  ALA   231      52.715  37.515  89.932  1.00 25.00           C
ATOM    232  CA  ASP   232      51.052  40.551  88.294  1.00 25.00           C
ATOM    233  CA  GLU   233      47.958  40.077  90.502  1.00 25.00           C
ATOM    234  CA  GLU   234      50.181  39.872  93.614  1.00 25.00           C
ATOM    235  CA  LYS   235      50.925  43.505  92.801  1.00 25.00           C
ATOM    236  CA  ILE   236      47.512  45.039  92.183  1.00 25.00           C
ATOM    237  CA  ASN   237      47.250  48.701  91.146  1.00 25.00           C
ATOM    238  CA  PRO   238      43.520  48.334  91.717  1.00 25.00           C
ATOM    239  CA  PRO   239      43.928  46.833  95.182  1.00 25.00           C
ATOM    240  CA  PRO   240      40.318  45.798  95.584  1.00 25.00           C
ATOM    241  CA  TYR   241      39.973  46.582  99.263  1.00 25.00           C
ATOM    242  CA  LEU   242      39.337  43.146 100.685  1.00 25.00           C
ATOM    243  CA  THR   243      42.265  40.693 100.649  1.00 25.00           C
ATOM    244  CA  CYS   244      41.414  37.645 102.781  1.00 25.00           C
ATOM    245  CA  GLU   245      42.487  35.445 105.712  1.00 25.00           C
ATOM    246  CA  SER   246      40.816  32.644 103.713  1.00 25.00           C
ATOM    247  CA  PHE   247      37.544  34.258 104.834  1.00 25.00           C
ATOM    248  CA  PRO   248      35.580  34.355 108.121  1.00 25.00           C
ATOM    249  CA  HIS   249      38.339  36.466 109.734  1.00 25.00           C
ATOM    250  CA  ALA   250      38.271  38.874 106.757  1.00 25.00           C
ATOM    251  CA  VAL   251      34.463  39.165 107.048  1.00 25.00           C
ATOM    252  CA  ASP   252      34.781  39.894 110.794  1.00 25.00           C
ATOM    253  CA  HIS   253      37.405  42.589 110.072  1.00 25.00           C
ATOM    254  CA  ILE   254      35.103  44.162 107.447  1.00 25.00           C
ATOM    255  CA  LEU   255      32.205  44.160 109.951  1.00 25.00           C
ATOM    256  CA  GLN   256      34.441  45.826 112.577  1.00 25.00           C
ATOM    257  CA  HIS   257      35.489  48.488 110.031  1.00 25.00           C
ATOM    258  CA  LEU   258      31.816  49.136 109.160  1.00 25.00           C
ATOM    259  CA  LEU   259      29.917  48.133 112.240  1.00 25.00           C
TER
END
