
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  148 , name T0341TS393_4-D1
# Molecule2: number of CA atoms  148 ( 1158),  selected  148 , name T0341_D1.pdb
# PARAMETERS: T0341TS393_4-D1.T0341_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148         7 - 259         3.99     3.99
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43        45 - 191         1.98     5.96
  LONGEST_CONTINUOUS_SEGMENT:    43        46 - 192         1.99     5.92
  LCS_AVERAGE:     15.59

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        53 - 68          0.94     8.74
  LCS_AVERAGE:      5.55

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     L       7     L       7      4    7  148     3    5   15   31   43   57   77  103  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K       8     K       8      4    7  148     3    5   11   23   43   61   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A       9     A       9      4   10  148     3    4   18   35   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V      10     V      10      4   10  148     3    5   12   19   32   55   75   98  116  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      11     L      11      4   10  148     3    6    9   15   34   52   68   96  116  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V      12     V      12      7   10  148     4    6    8   14   23   38   58   68   76   95  117  132  138  144  146  148  148  148  148  148 
LCS_GDT     D      13     D      13      7   10  148     4   11   15   21   35   46   68   81  100  115  128  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      14     L      14      7   10  148     5    9   20   35   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     N      15     N      15      7   10  148     4    7   19   35   48   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     G      16     G      16      7   10  148     3   13   19   33   43   56   68   86  109  121  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T      17     T      17      7   10  148     3    6    9   19   36   48   63   71   86   98  118  131  139  143  146  148  148  148  148  148 
LCS_GDT     L      18     L      18      7   10  148     2    6   15   22   34   46   63   81   96  110  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     H      19     H      19      4   10  148     3    4    7    8   34   50   66   83  102  117  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I      20     I      20      4    6  148     3    4    5   20   28   39   56   75   98  115  126  131  137  144  146  148  148  148  148  148 
LCS_GDT     E      21     E      21      5    6  148     3    4    5    8   10   25   48   52   85  109  125  131  135  143  146  148  148  148  148  148 
LCS_GDT     D      22     D      22      5    6  148     3    5    9   22   36   50   65   80   93  111  126  134  137  144  146  148  148  148  148  148 
LCS_GDT     A      23     A      23      5    6  148     3    5   13   31   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A      24     A      24      5    6  148     3    8   20   35   46   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V      25     V      25      5    8  148     3    4    8   14   26   45   71   93  116  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     P      26     P      26      3   16  148     5    9   19   29   48   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     G      27     G      27     13   18  148     9   12   13   19   36   51   63   81   95  112  128  135  139  144  146  148  148  148  148  148 
LCS_GDT     A      28     A      28     13   18  148     9   12   13   19   41   51   68   83  109  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     Q      29     Q      29     13   18  148     9   12   19   35   46   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E      30     E      30     13   18  148     9   12   19   33   43   60   74   94  113  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A      31     A      31     13   18  148     9   12   15   26   43   56   70   88  109  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      32     L      32     13   18  148     9   12   20   35   46   64   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K      33     K      33     13   18  148     9   12   19   35   46   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     R      34     R      34     13   18  148     9   12   17   33   43   60   74   92  110  123  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      35     L      35     13   18  148     9   12   20   35   46   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     R      36     R      36     13   18  148     9   12   20   35   46   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A      37     A      37     13   18  148     6   12   17   33   43   60   74   92  109  121  130  135  138  144  146  148  148  148  148  148 
LCS_GDT     T      38     T      38     13   18  148     3   11   19   35   46   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     S      39     S      39     13   18  148     3   13   19   33   44   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V      40     V      40      7   18  148     3   12   16   27   42   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     M      41     M      41      4   18  148     3   10   20   35   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V      42     V      42      4   18  148     3   10   19   35   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     R      43     R      43      4   26  148     3    9   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     F      44     F      44      4   42  148     3    5   18   30   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V      45     V      45      3   43  148     3    4   16   30   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T      46     T      46      3   43  148     3    3   12   26   41   64   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     N      47     N      47      3   43  148     3   10   21   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T      48     T      48      3   43  148     4   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T      49     T      49      3   43  148     3    4   21   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K      50     K      50      4   43  148     5   15   22   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E      51     E      51      4   43  148     3    8   18   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T      52     T      52     14   43  148     3   10   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K      53     K      53     16   43  148     8   15   22   27   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K      54     K      54     16   43  148     9   15   22   27   46   64   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D      55     D      55     16   43  148     9   15   22   30   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      56     L      56     16   43  148     9   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      57     L      57     16   43  148     9   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E      58     E      58     16   43  148     9   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     R      59     R      59     16   43  148     9   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      60     L      60     16   43  148     9   14   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K      61     K      61     16   43  148     9   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K      62     K      62     16   43  148     9   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L      63     L      63     16   43  148     5   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E      64     E      64     16   43  148     5   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     F      65     F      65     16   43  148     5   15   22   31   48   64   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E      66     E      66     16   43  148     3    7   22   28   44   64   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I      67     I      67     16   43  148     3   15   22   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     S      68     S      68     16   43  148     5   15   22   31   48   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E      69     E      69      7   43  148     5   11   18   28   48   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D      70     D      70      7   43  148     5   11   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E      71     E      71      7   43  148     5    6   18   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I      72     I      72      7   43  148     5   15   22   35   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     F      73     F      73      7   43  148     5   15   22   35   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T      74     T      74      7   43  148     5   15   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K     179     K     179      0   43  148     0    4   20   31   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     P     180     P     180      4   43  148     4    9   22   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E     181     E     181      4   43  148     3    4   13   24   41   61   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K     182     K     182     10   43  148     6   12   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T     183     T     183     10   43  148     9   13   22   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     F     184     F     184     10   43  148     9   13   19   35   48   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     F     185     F     185     10   43  148     9   13   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L     186     L     186     10   43  148     9   13   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E     187     E     187     10   43  148     9   13   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     188     A     188     10   43  148     9   13   22   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L     189     L     189     10   43  148     9   13   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     R     190     R     190     10   43  148     9   13   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     191     D     191     10   43  148     4    6   16   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     192     A     192      6   43  148     4    6   13   24   45   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     193     D     193      6   24  148     3    6   13   26   42   59   82  102  117  127  131  135  138  144  146  148  148  148  148  148 
LCS_GDT     C     194     C     194      6   23  148     3    7   13   25   42   63   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     195     A     195      4   23  148     3    4   13   26   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     P     196     P     196      4   23  148     3    9   22   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E     198     E     198      3   16  148     3    4    9   24   42   57   80  103  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     199     A     199      4   13  148     4    8   15   27   41   60   84  103  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V     200     V     200      4   13  148     4   11   15   30   43   60   82  101  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     M     201     M     201      4    9  148     9   13   19   35   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I     202     I     202      4    9  148     4   12   20   35   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     G     203     G     203      4    9  148     3    6   16   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     204     D     204      4    9  148     3    4   13   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     205     D     205      4    9  148     3    8   14   27   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     C     206     C     206      3   11  148     3    3    9   25   39   61   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     R     207     R     207      4   11  148     3    4    8   30   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     208     D     208      8   11  148     3    4    6    8   15   28   44   67   79   94  127  134  139  144  146  148  148  148  148  148 
LCS_GDT     D     209     D     209      8   11  148     3    7    9   12   14   19   31   48   62   88  119  134  139  144  146  148  148  148  148  148 
LCS_GDT     V     210     V     210      8   11  148     4    7    7   10   42   60   74   97  111  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     211     D     211      8   11  148     4   10   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     G     212     G     212      8   11  148     4    7    7   12   27   40   54   86  115  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     213     A     213      8   11  148     4    7    7   11   17   24   37   54   78  103  127  134  139  144  146  148  148  148  148  148 
LCS_GDT     Q     214     Q     214      8   11  148     4    9   20   35   46   61   85  103  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     N     215     N     215      8   11  148     4    7   19   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I     216     I     216      8   11  148     3    4    9   23   44   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     G     217     G     217      4   11  148     3   13   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     M     218     M     218      4   11  148     3    9   20   35   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L     219     L     219      4   11  148     3    9   20   35   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     G     220     G     220      4   11  148     7   13   20   35   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I     221     I     221      4   11  148     4   11   15   24   43   51   68   81   94  112  121  131  138  144  146  148  148  148  148  148 
LCS_GDT     L     222     L     222      4   11  148     3    4    9   23   35   46   62   81   86  102  120  126  137  142  146  148  148  148  148  148 
LCS_GDT     V     223     V     223      4   11  148     3    4    9   23   34   46   62   81   88  102  120  131  138  142  146  148  148  148  148  148 
LCS_GDT     K     224     K     224      4   11  148     3    3    5    7   25   44   56   82  107  120  128  135  139  144  146  148  148  148  148  148 
LCS_GDT     T     225     T     225      4   10  148     3    5   17   33   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     G     226     G     226      5   11  148     3    6   10   19   33   62   80  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K     227     K     227      6   11  148     3    6   11   19   30   62   80  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     Y     228     Y     228      6   11  148     4    6   10   29   47   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K     229     K     229      6   16  148     3    6   16   30   47   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     230     A     230      6   16  148     4    6   16   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     231     A     231      6   16  148     4    6    9   17   39   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     232     D     232      6   16  148     4    6    9   12   19   42   79  101  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E     233     E     233      6   16  148     4    5   14   25   38   59   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E     234     E     234      9   16  148     4    6   12   27   47   64   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     K     235     K     235      9   16  148     3    5   12   19   30   61   79  102  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I     236     I     236      9   16  148     3    6   12   19   30   62   80  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     N     237     N     237      9   16  148     1    6   10   15   27   42   54   72  102  116  126  134  139  144  146  148  148  148  148  148 
LCS_GDT     P     238     P     238      9   16  148     1    4   10   17   36   57   76   97  116  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     P     239     P     239      9   16  148     0    5   12   26   43   62   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     P     240     P     240      9   19  148     3    6   16   34   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     Y     241     Y     241      9   19  148     3    6   14   29   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L     242     L     242      9   19  148     3    9   19   29   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     T     243     T     243      5   19  148     5   10   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     C     244     C     244      5   19  148     3    6   12   28   48   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     E     245     E     245      5   19  148     3   10   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     S     246     S     246     12   19  148     3    5   16   31   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     F     247     F     247     12   19  148    10   11   16   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     P     248     P     248     12   19  148    10   11   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     H     249     H     249     12   19  148    10   11   19   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     A     250     A     250     12   19  148    10   11   16   34   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     V     251     V     251     12   19  148    10   11   18   34   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     D     252     D     252     12   19  148    10   11   20   36   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     H     253     H     253     12   19  148    10   11   20   35   48   66   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     I     254     I     254     12   19  148    10   11   19   35   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L     255     L     255     12   19  148    10   11   13   19   42   60   82  103  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     Q     256     Q     256     12   19  148    10   11   16   31   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     H     257     H     257     12   19  148     4   11   19   35   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L     258     L     258     12   19  148     3    6   16   31   46   65   85  105  117  127  131  135  139  144  146  148  148  148  148  148 
LCS_GDT     L     259     L     259      4   19  148     3    4    5    8   17   36   53   74   98  112  127  134  139  144  146  148  148  148  148  148 
LCS_AVERAGE  LCS_A:  40.38  (   5.55   15.59  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     15     22     36     48     66     85    105    117    127    131    135    139    144    146    148    148    148    148    148 
GDT PERCENT_CA   6.76  10.14  14.86  24.32  32.43  44.59  57.43  70.95  79.05  85.81  88.51  91.22  93.92  97.30  98.65 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.14   0.64   1.06   1.60   1.85   2.17   2.54   2.84   3.05   3.28   3.40   3.53   3.71   3.83   3.90   3.99   3.99   3.99   3.99   3.99
GDT RMS_ALL_CA  11.11   9.97   8.31   4.54   4.65   4.28   4.08   4.10   4.05   4.02   4.00   3.99   3.99   3.99   3.99   3.99   3.99   3.99   3.99   3.99

#      Molecule1      Molecule2       DISTANCE
LGA    L       7      L       7          4.650
LGA    K       8      K       8          3.946
LGA    A       9      A       9          2.764
LGA    V      10      V      10          4.908
LGA    L      11      L      11          5.150
LGA    V      12      V      12          7.430
LGA    D      13      D      13          6.484
LGA    L      14      L      14          2.406
LGA    N      15      N      15          3.353
LGA    G      16      G      16          6.654
LGA    T      17      T      17          8.352
LGA    L      18      L      18          7.094
LGA    H      19      H      19          5.910
LGA    I      20      I      20          6.282
LGA    E      21      E      21          6.918
LGA    D      22      D      22          7.356
LGA    A      23      A      23          3.158
LGA    A      24      A      24          4.164
LGA    V      25      V      25          4.958
LGA    P      26      P      26          2.987
LGA    G      27      G      27          7.693
LGA    A      28      A      28          6.198
LGA    Q      29      Q      29          3.700
LGA    E      30      E      30          5.875
LGA    A      31      A      31          6.051
LGA    L      32      L      32          3.216
LGA    K      33      K      33          4.283
LGA    R      34      R      34          6.099
LGA    L      35      L      35          3.995
LGA    R      36      R      36          3.646
LGA    A      37      A      37          6.479
LGA    T      38      T      38          4.673
LGA    S      39      S      39          4.493
LGA    V      40      V      40          3.658
LGA    M      41      M      41          2.196
LGA    V      42      V      42          2.620
LGA    R      43      R      43          0.865
LGA    F      44      F      44          1.973
LGA    V      45      V      45          2.493
LGA    T      46      T      46          3.333
LGA    N      47      N      47          0.822
LGA    T      48      T      48          2.361
LGA    T      49      T      49          2.890
LGA    K      50      K      50          2.770
LGA    E      51      E      51          0.884
LGA    T      52      T      52          1.179
LGA    K      53      K      53          2.572
LGA    K      54      K      54          3.228
LGA    D      55      D      55          2.986
LGA    L      56      L      56          1.623
LGA    L      57      L      57          1.618
LGA    E      58      E      58          1.719
LGA    R      59      R      59          2.616
LGA    L      60      L      60          3.003
LGA    K      61      K      61          1.839
LGA    K      62      K      62          2.215
LGA    L      63      L      63          2.738
LGA    E      64      E      64          2.604
LGA    F      65      F      65          3.933
LGA    E      66      E      66          3.762
LGA    I      67      I      67          3.182
LGA    S      68      S      68          3.464
LGA    E      69      E      69          3.485
LGA    D      70      D      70          2.466
LGA    E      71      E      71          1.866
LGA    I      72      I      72          3.208
LGA    F      73      F      73          2.826
LGA    T      74      T      74          1.694
LGA    K     179      K     179          3.263
LGA    P     180      P     180          3.475
LGA    E     181      E     181          3.866
LGA    K     182      K     182          2.756
LGA    T     183      T     183          3.403
LGA    F     184      F     184          3.848
LGA    F     185      F     185          2.398
LGA    L     186      L     186          2.482
LGA    E     187      E     187          2.970
LGA    A     188      A     188          2.306
LGA    L     189      L     189          1.365
LGA    R     190      R     190          2.353
LGA    D     191      D     191          1.402
LGA    A     192      A     192          3.248
LGA    D     193      D     193          4.502
LGA    C     194      C     194          3.909
LGA    A     195      A     195          3.895
LGA    P     196      P     196          3.535
LGA    E     198      E     198          4.510
LGA    A     199      A     199          4.236
LGA    V     200      V     200          4.643
LGA    M     201      M     201          2.560
LGA    I     202      I     202          2.349
LGA    G     203      G     203          1.407
LGA    D     204      D     204          2.185
LGA    D     205      D     205          2.347
LGA    C     206      C     206          3.577
LGA    R     207      R     207          2.637
LGA    D     208      D     208          6.783
LGA    D     209      D     209          7.918
LGA    V     210      V     210          5.519
LGA    D     211      D     211          1.189
LGA    G     212      G     212          5.422
LGA    A     213      A     213          7.014
LGA    Q     214      Q     214          4.290
LGA    N     215      N     215          1.681
LGA    I     216      I     216          2.633
LGA    G     217      G     217          0.836
LGA    M     218      M     218          3.534
LGA    L     219      L     219          3.811
LGA    G     220      G     220          2.775
LGA    I     221      I     221          7.586
LGA    L     222      L     222          8.294
LGA    V     223      V     223          8.423
LGA    K     224      K     224          6.592
LGA    T     225      T     225          2.755
LGA    G     226      G     226          3.955
LGA    K     227      K     227          3.881
LGA    Y     228      Y     228          2.757
LGA    K     229      K     229          3.820
LGA    A     230      A     230          3.102
LGA    A     231      A     231          3.390
LGA    D     232      D     232          4.502
LGA    E     233      E     233          3.615
LGA    E     234      E     234          3.385
LGA    K     235      K     235          4.334
LGA    I     236      I     236          3.935
LGA    N     237      N     237          6.743
LGA    P     238      P     238          4.862
LGA    P     239      P     239          3.547
LGA    P     240      P     240          1.653
LGA    Y     241      Y     241          1.783
LGA    L     242      L     242          2.455
LGA    T     243      T     243          1.735
LGA    C     244      C     244          3.539
LGA    E     245      E     245          2.273
LGA    S     246      S     246          2.024
LGA    F     247      F     247          2.209
LGA    P     248      P     248          2.558
LGA    H     249      H     249          2.976
LGA    A     250      A     250          1.794
LGA    V     251      V     251          1.787
LGA    D     252      D     252          2.199
LGA    H     253      H     253          0.813
LGA    I     254      I     254          3.373
LGA    L     255      L     255          4.524
LGA    Q     256      Q     256          3.452
LGA    H     257      H     257          3.838
LGA    L     258      L     258          3.423
LGA    L     259      L     259          6.387

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  148    4.0    105    2.84    51.351    45.658     3.565

LGA_LOCAL      RMSD =  2.845  Number of atoms =  105  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.062  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  3.987  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.972841 * X  +   0.035131 * Y  +  -0.228792 * Z  +  28.383638
  Y_new =   0.218378 * X  +  -0.467037 * Y  +   0.856848 * Z  +  33.803444
  Z_new =  -0.076752 * X  +  -0.883540 * Y  +  -0.462024 * Z  +  90.938835 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.052615    1.088978  [ DEG:  -117.6062     62.3938 ]
  Theta =   0.076827    3.064765  [ DEG:     4.4019    175.5981 ]
  Phi   =   0.220814   -2.920778  [ DEG:    12.6517   -167.3483 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS393_4-D1                               
REMARK     2: T0341_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS393_4-D1.T0341_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  148   4.0  105   2.84  45.658     3.99
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS393_4-D1
PFRMAT TS
TARGET T0341
MODEL 4
PARENT N/A
ATOM      7  CA  LEU     7      28.332  44.530 102.423  1.00 25.00           C
ATOM      8  CA  LYS     8      25.930  42.218 104.270  1.00 25.00           C
ATOM      9  CA  ALA     9      25.667  40.498 100.885  1.00 25.00           C
ATOM     10  CA  VAL    10      24.326  37.978  98.403  1.00 25.00           C
ATOM     11  CA  LEU    11      24.293  35.911  95.192  1.00 25.00           C
ATOM     12  CA  VAL    12      24.030  32.144  94.887  1.00 25.00           C
ATOM     13  CA  ASP    13      26.114  28.958  94.565  1.00 25.00           C
ATOM     14  CA  LEU    14      29.852  28.515  95.376  1.00 25.00           C
ATOM     15  CA  ASN    15      31.358  25.375  93.762  1.00 25.00           C
ATOM     16  CA  GLY    16      33.168  27.076  90.868  1.00 25.00           C
ATOM     17  CA  THR    17      31.877  30.636  91.522  1.00 25.00           C
ATOM     18  CA  LEU    18      34.490  30.522  94.283  1.00 25.00           C
ATOM     19  CA  HIS    19      37.392  29.727  96.623  1.00 25.00           C
ATOM     20  CA  ILE    20      40.097  29.145  99.191  1.00 25.00           C
ATOM     21  CA  GLU    21      40.785  25.858  97.494  1.00 25.00           C
ATOM     22  CA  ASP    22      41.402  22.464  95.924  1.00 25.00           C
ATOM     23  CA  ALA    23      41.220  20.281  98.993  1.00 25.00           C
ATOM     24  CA  ALA    24      37.470  21.108  99.168  1.00 25.00           C
ATOM     25  CA  VAL    25      37.896  21.202 102.981  1.00 25.00           C
ATOM     26  CA  PRO    26      39.559  24.331 104.365  1.00 25.00           C
ATOM     27  CA  GLY    27      37.273  26.024 101.798  1.00 25.00           C
ATOM     28  CA  ALA    28      33.613  26.980 101.205  1.00 25.00           C
ATOM     29  CA  GLN    29      32.722  25.870 104.760  1.00 25.00           C
ATOM     30  CA  GLU    30      35.611  27.955 106.162  1.00 25.00           C
ATOM     31  CA  ALA    31      34.419  30.997 104.164  1.00 25.00           C
ATOM     32  CA  LEU    32      30.863  30.511 105.500  1.00 25.00           C
ATOM     33  CA  LYS    33      32.210  30.294 109.078  1.00 25.00           C
ATOM     34  CA  ARG    34      34.218  33.511 108.543  1.00 25.00           C
ATOM     35  CA  LEU    35      31.092  35.266 107.194  1.00 25.00           C
ATOM     36  CA  ARG    36      29.090  34.095 110.241  1.00 25.00           C
ATOM     37  CA  ALA    37      31.830  35.402 112.575  1.00 25.00           C
ATOM     38  CA  THR    38      29.613  38.498 112.736  1.00 25.00           C
ATOM     39  CA  SER    39      26.057  37.946 111.594  1.00 25.00           C
ATOM     40  CA  VAL    40      24.679  36.357 108.365  1.00 25.00           C
ATOM     41  CA  MET    41      23.711  36.873 104.729  1.00 25.00           C
ATOM     42  CA  VAL    42      26.260  35.380 102.326  1.00 25.00           C
ATOM     43  CA  ARG    43      24.162  33.086 100.046  1.00 25.00           C
ATOM     44  CA  PHE    44      27.367  32.846  97.997  1.00 25.00           C
ATOM     45  CA  VAL    45      28.890  33.356  94.568  1.00 25.00           C
ATOM     46  CA  THR    46      27.647  32.860  91.023  1.00 25.00           C
ATOM     47  CA  ASN    47      27.626  30.185  88.335  1.00 25.00           C
ATOM     48  CA  THR    48      28.319  26.717  89.672  1.00 25.00           C
ATOM     49  CA  THR    49      25.522  25.672  87.300  1.00 25.00           C
ATOM     50  CA  LYS    50      27.343  22.386  86.917  1.00 25.00           C
ATOM     51  CA  GLU    51      24.391  21.026  88.985  1.00 25.00           C
ATOM     52  CA  THR    52      21.367  22.368  90.837  1.00 25.00           C
ATOM     53  CA  LYS    53      22.177  21.393  94.465  1.00 25.00           C
ATOM     54  CA  LYS    54      22.487  17.886  95.971  1.00 25.00           C
ATOM     55  CA  ASP    55      26.303  18.207  95.996  1.00 25.00           C
ATOM     56  CA  LEU    56      26.029  21.612  97.728  1.00 25.00           C
ATOM     57  CA  LEU    57      23.670  20.117 100.348  1.00 25.00           C
ATOM     58  CA  GLU    58      26.124  17.240 100.953  1.00 25.00           C
ATOM     59  CA  ARG    59      28.993  19.744 101.370  1.00 25.00           C
ATOM     60  CA  LEU    60      26.904  21.760 103.867  1.00 25.00           C
ATOM     61  CA  LYS    61      26.122  18.566 105.830  1.00 25.00           C
ATOM     62  CA  LYS    62      29.844  17.668 105.898  1.00 25.00           C
ATOM     63  CA  LEU    63      31.485  21.133 106.185  1.00 25.00           C
ATOM     64  CA  GLU    64      29.051  21.636 109.020  1.00 25.00           C
ATOM     65  CA  PHE    65      25.815  23.654 108.642  1.00 25.00           C
ATOM     66  CA  GLU    66      22.446  22.752 107.209  1.00 25.00           C
ATOM     67  CA  ILE    67      20.787  25.598 105.341  1.00 25.00           C
ATOM     68  CA  SER    68      17.324  24.510 104.148  1.00 25.00           C
ATOM     69  CA  GLU    69      15.682  26.419 101.255  1.00 25.00           C
ATOM     70  CA  ASP    70      16.921  29.780 102.610  1.00 25.00           C
ATOM     71  CA  GLU    71      20.491  28.935 101.512  1.00 25.00           C
ATOM     72  CA  ILE    72      19.292  27.727  98.081  1.00 25.00           C
ATOM     73  CA  PHE    73      19.605  29.425  94.687  1.00 25.00           C
ATOM     74  CA  THR    74      21.841  29.046  91.613  1.00 25.00           C
ATOM    179  CA  LYS   179      29.719  37.426  89.185  1.00 25.00           C
ATOM    180  CA  PRO   180      28.288  40.463  87.436  1.00 25.00           C
ATOM    181  CA  GLU   181      26.287  43.131  85.614  1.00 25.00           C
ATOM    182  CA  LYS   182      23.251  43.151  87.866  1.00 25.00           C
ATOM    183  CA  THR   183      19.480  42.485  87.877  1.00 25.00           C
ATOM    184  CA  PHE   184      20.094  38.893  89.057  1.00 25.00           C
ATOM    185  CA  PHE   185      22.373  40.175  91.855  1.00 25.00           C
ATOM    186  CA  LEU   186      19.689  42.689  92.923  1.00 25.00           C
ATOM    187  CA  GLU   187      17.064  39.901  92.973  1.00 25.00           C
ATOM    188  CA  ALA   188      19.381  37.723  95.106  1.00 25.00           C
ATOM    189  CA  LEU   189      19.923  40.635  97.534  1.00 25.00           C
ATOM    190  CA  ARG   190      16.139  41.170  97.777  1.00 25.00           C
ATOM    191  CA  ASP   191      15.632  37.439  98.483  1.00 25.00           C
ATOM    192  CA  ALA   192      18.029  37.811 101.323  1.00 25.00           C
ATOM    193  CA  ASP   193      16.916  40.858 103.252  1.00 25.00           C
ATOM    194  CA  CYS   194      19.824  43.214 102.579  1.00 25.00           C
ATOM    195  CA  ALA   195      19.086  45.421  99.541  1.00 25.00           C
ATOM    196  CA  PRO   196      21.413  47.629  97.419  1.00 25.00           C
ATOM    197  CA  GLU   197      24.672  49.503  98.147  1.00 25.00           C
ATOM    198  CA  GLU   198      26.644  46.232  97.868  1.00 25.00           C
ATOM    199  CA  ALA   199      24.478  43.291  96.807  1.00 25.00           C
ATOM    200  CA  VAL   200      27.581  41.158  96.253  1.00 25.00           C
ATOM    201  CA  MET   201      29.441  37.874  96.681  1.00 25.00           C
ATOM    202  CA  ILE   202      32.655  35.848  97.123  1.00 25.00           C
ATOM    203  CA  GLY   203      36.353  35.118  96.933  1.00 25.00           C
ATOM    204  CA  ASP   204      38.954  36.033  94.329  1.00 25.00           C
ATOM    205  CA  ASP   205      40.126  33.961  91.355  1.00 25.00           C
ATOM    206  CA  CYS   206      40.940  36.701  88.790  1.00 25.00           C
ATOM    207  CA  ARG   207      37.478  37.874  89.699  1.00 25.00           C
ATOM    208  CA  ASP   208      38.929  41.418  89.743  1.00 25.00           C
ATOM    209  CA  ASP   209      37.521  42.065  86.241  1.00 25.00           C
ATOM    210  CA  VAL   210      34.084  40.801  87.362  1.00 25.00           C
ATOM    211  CA  ASP   211      34.212  43.097  90.425  1.00 25.00           C
ATOM    212  CA  GLY   212      35.129  46.068  88.189  1.00 25.00           C
ATOM    213  CA  ALA   213      32.209  45.244  85.854  1.00 25.00           C
ATOM    214  CA  GLN   214      29.832  45.064  88.850  1.00 25.00           C
ATOM    215  CA  ASN   215      31.104  48.455  90.096  1.00 25.00           C
ATOM    216  CA  ILE   216      27.492  49.515  89.585  1.00 25.00           C
ATOM    217  CA  GLY   217      27.285  48.637  93.319  1.00 25.00           C
ATOM    218  CA  MET   218      27.809  44.894  92.892  1.00 25.00           C
ATOM    219  CA  LEU   219      31.336  44.563  94.342  1.00 25.00           C
ATOM    220  CA  GLY   220      33.058  41.244  95.040  1.00 25.00           C
ATOM    221  CA  ILE   221      33.453  38.220  92.745  1.00 25.00           C
ATOM    222  CA  LEU   222      34.329  34.633  92.028  1.00 25.00           C
ATOM    223  CA  VAL   223      35.652  31.456  93.598  1.00 25.00           C
ATOM    224  CA  LYS   224      39.050  30.921  95.289  1.00 25.00           C
ATOM    225  CA  THR   225      40.921  32.883  97.865  1.00 25.00           C
ATOM    226  CA  GLY   226      44.032  30.923  96.918  1.00 25.00           C
ATOM    227  CA  LYS   227      45.227  31.696  93.404  1.00 25.00           C
ATOM    228  CA  TYR   228      45.455  35.504  93.487  1.00 25.00           C
ATOM    229  CA  LYS   229      48.793  35.364  95.278  1.00 25.00           C
ATOM    230  CA  ALA   230      50.737  38.626  95.407  1.00 25.00           C
ATOM    231  CA  ALA   231      52.628  40.355  92.562  1.00 25.00           C
ATOM    232  CA  ASP   232      50.186  38.877  90.008  1.00 25.00           C
ATOM    233  CA  GLU   233      47.220  40.108  92.094  1.00 25.00           C
ATOM    234  CA  GLU   234      48.768  43.606  92.277  1.00 25.00           C
ATOM    235  CA  LYS   235      47.945  45.301  89.003  1.00 25.00           C
ATOM    236  CA  ILE   236      44.492  46.827  89.148  1.00 25.00           C
ATOM    237  CA  ASN   237      46.300  49.703  90.787  1.00 25.00           C
ATOM    238  CA  PRO   238      43.219  49.736  93.045  1.00 25.00           C
ATOM    239  CA  PRO   239      43.523  46.501  95.047  1.00 25.00           C
ATOM    240  CA  PRO   240      39.821  45.913  94.316  1.00 25.00           C
ATOM    241  CA  TYR   241      39.373  46.978  97.964  1.00 25.00           C
ATOM    242  CA  LEU   242      38.653  43.292  98.647  1.00 25.00           C
ATOM    243  CA  THR   243      41.027  40.912 100.479  1.00 25.00           C
ATOM    244  CA  CYS   244      39.791  37.400 101.430  1.00 25.00           C
ATOM    245  CA  GLU   245      42.157  35.277 103.527  1.00 25.00           C
ATOM    246  CA  SER   246      40.911  31.742 104.137  1.00 25.00           C
ATOM    247  CA  PHE   247      37.789  32.965 105.977  1.00 25.00           C
ATOM    248  CA  PRO   248      35.814  33.976 109.099  1.00 25.00           C
ATOM    249  CA  HIS   249      38.582  36.430 110.088  1.00 25.00           C
ATOM    250  CA  ALA   250      38.546  37.927 106.562  1.00 25.00           C
ATOM    251  CA  VAL   251      34.740  38.313 106.739  1.00 25.00           C
ATOM    252  CA  ASP   252      35.048  40.042 110.143  1.00 25.00           C
ATOM    253  CA  HIS   253      37.697  42.416 108.725  1.00 25.00           C
ATOM    254  CA  ILE   254      35.419  43.223 105.754  1.00 25.00           C
ATOM    255  CA  LEU   255      32.511  43.928 108.144  1.00 25.00           C
ATOM    256  CA  GLN   256      34.749  46.237 110.224  1.00 25.00           C
ATOM    257  CA  HIS   257      35.830  48.090 107.052  1.00 25.00           C
ATOM    258  CA  LEU   258      32.166  48.498 106.013  1.00 25.00           C
ATOM    259  CA  LEU   259      31.504  50.280 109.268  1.00 25.00           C
TER
END
