
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  104 (  104),  selected  104 , name T0341TS393_4-D2
# Molecule2: number of CA atoms  104 (  810),  selected  104 , name T0341_D2.pdb
# PARAMETERS: T0341TS393_4-D2.T0341_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104        75 - 178         3.30     3.30
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    59       119 - 177         2.00     4.06
  LONGEST_CONTINUOUS_SEGMENT:    59       120 - 178         1.98     3.99
  LCS_AVERAGE:     40.67

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       154 - 172         0.92     5.10
  LCS_AVERAGE:      9.91

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  104
LCS_GDT     S      75     S      75     14   18  104    12   13   16   25   45   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L      76     L      76     14   18  104    12   13   16   25   43   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     T      77     T      77     14   18  104    12   13   16   27   44   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A      78     A      78     14   18  104    12   13   16   22   43   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A      79     A      79     14   18  104    12   13   16   22   41   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     R      80     R      80     14   18  104    12   13   16   22   45   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     N      81     N      81     14   18  104    12   13   16   22   40   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L      82     L      82     14   18  104    12   13   16   19   29   51   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     I      83     I      83     14   18  104    12   13   16   22   34   57   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     E      84     E      84     14   18  104    12   13   16   22   34   57   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Q      85     Q      85     14   18  104    12   13   16   19   25   41   64   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     K      86     K      86     14   18  104    12   13   16   19   23   33   47   63   90   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Q      87     Q      87     14   18  104     3    4    7   12   29   34   57   76   91   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     V      88     V      88     14   18  104    12   13   16   22   29   43   68   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     R      89     R      89      4   18  104     3    6   15   22   34   54   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     P      90     P      90      4   18  104     3    5   12   22   34   54   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     M      91     M      91      4   18  104     2    7    9   15   32   56   62   69   78   91   98  100  104  104  104  104  104  104  104  104 
LCS_GDT     L      92     L      92      3   18  104     3    3    6   24   40   57   66   81   91   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L      93     L      93      3   16  104     3    7   20   28   47   60   66   81   91   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L      94     L      94      3    8  104     3    3   16   22   37   56   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     D      95     D      95      3    9  104     3    7   16   23   29   52   67   79   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     D      96     D      96      5    9  104     3    4    8   15   34   53   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     R      97     R      97      5    9  104     3    5   16   23   37   56   70   81   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A      98     A      98      6    9  104     3    9   17   29   47   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L      99     L      99      6    9  104     3    7   12   23   36   52   67   78   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     P     100     P     100      6    9  104     3    5    8   16   23   35   46   66   77   87   95  102  104  104  104  104  104  104  104  104 
LCS_GDT     E     101     E     101      6    9  104     3    5    6   21   29   40   56   75   85   97  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     F     102     F     102      6    9  104     3    8   24   34   51   59   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     T     103     T     103      6    9  104     3    9   17   29   41   57   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     G     104     G     104      4    9  104     3    7   11   22   32   45   57   68   82   95  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     V     105     V     105      4    7  104     3    7   11   22   32   45   57   75   89   98  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Q     106     Q     106      4    7  104     3    4    8   19   40   56   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     T     107     T     107      4    7  104     3    4    4    7   15   32   66   77   89   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Q     108     Q     108      6   11  104     3    6   17   29   40   56   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     D     109     D     109      6   12  104     3    4   10   19   34   55   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     P     110     P     110      6   29  104     3    6   22   44   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     N     111     N     111      6   29  104     3   10   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     112     A     112      6   29  104     3   10   23   44   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     V     113     V     113      6   29  104     6   13   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     V     114     V     114      5   29  104     3    4    7    9   20   46   61   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     I     115     I     115      6   58  104     3    5    9   30   46   60   67   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     G     116     G     116      6   58  104     3   12   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     117     L     117      6   58  104     8   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     118     A     118      6   58  104     3    5   11   28   48   60   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     P     119     P     119      6   59  104     4   11   28   41   54   61   70   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     E     120     E     120      6   59  104     3    5   14   28   45   58   66   82   91   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     H     121     H     121      4   59  104     3    3   10   18   23   38   59   82   89   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     F     122     F     122     14   59  104     3   12   24   43   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     H     123     H     123     14   59  104     3    7   24   42   55   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Y     124     Y     124     14   59  104     3   13   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Q     125     Q     125     14   59  104    10   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     126     L     126     14   59  104    10   13   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     127     L     127     14   59  104    10   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     N     128     N     128     14   59  104    10   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Q     129     Q     129     14   59  104    10   13   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     130     A     130     14   59  104    10   13   28   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     F     131     F     131     14   59  104    10   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     R     132     R     132     14   59  104    10   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     133     L     133     14   59  104    10   13   28   42   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     134     L     134     14   59  104    10   13   28   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     135     L     135     14   59  104    10   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     D     136     D     136     14   59  104     4   15   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     G     137     G     137      4   59  104     3   10   27   42   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     138     A     138      5   59  104     9   18   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     P     139     P     139      5   59  104     3   12   26   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     140     L     140      5   59  104     3    4   12   18   45   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     I     141     I     141      5   59  104     3   12   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     142     A     142      5   59  104     3    5   19   34   57   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     I     143     I     143      4   59  104     3   16   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     H     144     H     144      7   59  104     3    3   15   42   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     K     145     K     145      7   59  104     4   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     146     A     146      7   59  104     4   15   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     R     147     R     147      7   59  104     4   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Y     148     Y     148      7   59  104     3   13   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Y     149     Y     149      7   59  104     3   15   27   44   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     K     150     K     150      7   59  104     3   10   20   36   56   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     R     151     R     151      4   59  104     3    4   27   42   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     K     152     K     152      7   59  104     3   16   27   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     D     153     D     153     17   59  104     3   11   27   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     G     154     G     154     19   59  104     3   11   28   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     155     L     155     19   59  104     5   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     156     A     156     19   59  104    10   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     157     L     157     19   59  104     8   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     G     158     G     158     19   59  104     4   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     P     159     P     159     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     G     160     G     160     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     P     161     P     161     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     F     162     F     162     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     V     163     V     163     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     T     164     T     164     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     165     A     165     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     L     166     L     166     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     E     167     E     167     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     Y     168     Y     168     19   59  104    10   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     169     A     169     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     T     170     T     170     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     D     171     D     171     19   59  104    11   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     T     172     T     172     19   59  104    12   18   30   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     K     173     K     173      3   59  104     3    3   13   27   38   55   64   80   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     A     174     A     174      5   59  104     3   12   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     M     175     M     175      5   59  104     3   13   29   45   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     V     176     V     176      5   59  104     3    8   25   41   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     V     177     V     177      5   59  104     3   12   27   42   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_GDT     G     178     G     178      5   59  104     2   12   27   42   58   62   71   82   92   99  102  102  104  104  104  104  104  104  104  104 
LCS_AVERAGE  LCS_A:  50.19  (   9.91   40.67  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     18     30     45     58     62     71     82     92     99    102    102    104    104    104    104    104    104    104    104 
GDT PERCENT_CA  11.54  17.31  28.85  43.27  55.77  59.62  68.27  78.85  88.46  95.19  98.08  98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.19   0.61   1.17   1.39   1.68   1.82   2.28   2.59   2.86   3.05   3.18   3.18   3.30   3.30   3.30   3.30   3.30   3.30   3.30   3.30
GDT RMS_ALL_CA   7.74   5.37   4.28   4.44   4.08   3.98   3.48   3.38   3.32   3.32   3.30   3.30   3.30   3.30   3.30   3.30   3.30   3.30   3.30   3.30

#      Molecule1      Molecule2       DISTANCE
LGA    S      75      S      75          2.907
LGA    L      76      L      76          3.131
LGA    T      77      T      77          3.310
LGA    A      78      A      78          3.274
LGA    A      79      A      79          3.011
LGA    R      80      R      80          2.863
LGA    N      81      N      81          3.467
LGA    L      82      L      82          3.735
LGA    I      83      I      83          3.526
LGA    E      84      E      84          3.266
LGA    Q      85      Q      85          4.104
LGA    K      86      K      86          4.872
LGA    Q      87      Q      87          4.778
LGA    V      88      V      88          4.232
LGA    R      89      R      89          3.927
LGA    P      90      P      90          3.877
LGA    M      91      M      91          6.158
LGA    L      92      L      92          4.587
LGA    L      93      L      93          4.441
LGA    L      94      L      94          3.706
LGA    D      95      D      95          4.259
LGA    D      96      D      96          3.664
LGA    R      97      R      97          4.693
LGA    A      98      A      98          2.769
LGA    L      99      L      99          4.738
LGA    P     100      P     100          7.990
LGA    E     101      E     101          6.536
LGA    F     102      F     102          2.488
LGA    T     103      T     103          3.908
LGA    G     104      G     104          7.177
LGA    V     105      V     105          6.249
LGA    Q     106      Q     106          4.561
LGA    T     107      T     107          5.327
LGA    Q     108      Q     108          4.324
LGA    D     109      D     109          3.992
LGA    P     110      P     110          2.397
LGA    N     111      N     111          3.043
LGA    A     112      A     112          2.809
LGA    V     113      V     113          2.813
LGA    V     114      V     114          4.616
LGA    I     115      I     115          4.045
LGA    G     116      G     116          2.160
LGA    L     117      L     117          0.622
LGA    A     118      A     118          3.417
LGA    P     119      P     119          3.704
LGA    E     120      E     120          4.857
LGA    H     121      H     121          5.032
LGA    F     122      F     122          2.478
LGA    H     123      H     123          2.211
LGA    Y     124      Y     124          3.811
LGA    Q     125      Q     125          3.957
LGA    L     126      L     126          3.397
LGA    L     127      L     127          2.292
LGA    N     128      N     128          3.187
LGA    Q     129      Q     129          3.555
LGA    A     130      A     130          2.909
LGA    F     131      F     131          2.301
LGA    R     132      R     132          3.431
LGA    L     133      L     133          3.678
LGA    L     134      L     134          2.631
LGA    L     135      L     135          2.746
LGA    D     136      D     136          1.640
LGA    G     137      G     137          3.509
LGA    A     138      A     138          1.867
LGA    P     139      P     139          2.202
LGA    L     140      L     140          3.583
LGA    I     141      I     141          1.771
LGA    A     142      A     142          2.433
LGA    I     143      I     143          2.437
LGA    H     144      H     144          2.944
LGA    K     145      K     145          1.876
LGA    A     146      A     146          1.594
LGA    R     147      R     147          1.166
LGA    Y     148      Y     148          1.741
LGA    Y     149      Y     149          1.629
LGA    K     150      K     150          2.550
LGA    R     151      R     151          2.335
LGA    K     152      K     152          3.309
LGA    D     153      D     153          2.767
LGA    G     154      G     154          1.575
LGA    L     155      L     155          2.142
LGA    A     156      A     156          1.819
LGA    L     157      L     157          1.004
LGA    G     158      G     158          1.098
LGA    P     159      P     159          1.434
LGA    G     160      G     160          1.924
LGA    P     161      P     161          1.655
LGA    F     162      F     162          0.540
LGA    V     163      V     163          1.038
LGA    T     164      T     164          1.581
LGA    A     165      A     165          1.310
LGA    L     166      L     166          0.916
LGA    E     167      E     167          0.710
LGA    Y     168      Y     168          2.132
LGA    A     169      A     169          2.496
LGA    T     170      T     170          1.526
LGA    D     171      D     171          0.807
LGA    T     172      T     172          0.831
LGA    K     173      K     173          4.420
LGA    A     174      A     174          1.672
LGA    M     175      M     175          2.222
LGA    V     176      V     176          1.815
LGA    V     177      V     177          1.194
LGA    G     178      G     178          0.457

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  104  104    4.0     82    2.59    59.856    60.130     3.045

LGA_LOCAL      RMSD =  2.593  Number of atoms =   82  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.335  Number of atoms =  104 
Std_ALL_ATOMS  RMSD =  3.298  (standard rmsd on all 104 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.921531 * X  +  -0.165439 * Y  +  -0.351299 * Z  +  28.097349
  Y_new =   0.185657 * X  +  -0.606871 * Y  +   0.772813 * Z  +  31.116123
  Z_new =  -0.341046 * X  +  -0.777392 * Y  +  -0.528535 * Z  +  85.250320 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.167893    0.973700  [ DEG:  -124.2111     55.7889 ]
  Theta =   0.348030    2.793563  [ DEG:    19.9406    160.0594 ]
  Phi   =   0.198805   -2.942788  [ DEG:    11.3907   -168.6093 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS393_4-D2                               
REMARK     2: T0341_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS393_4-D2.T0341_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  104  104   4.0   82   2.59  60.130     3.30
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS393_4-D2
PFRMAT TS
TARGET T0341
MODEL 4
PARENT N/A
ATOM     75  CA  SER    75      20.744  30.130  87.143  1.00 25.00           C
ATOM     76  CA  LEU    76      18.090  27.943  85.458  1.00 25.00           C
ATOM     77  CA  THR    77      15.698  28.549  88.387  1.00 25.00           C
ATOM     78  CA  ALA    78      16.299  32.322  88.131  1.00 25.00           C
ATOM     79  CA  ALA    79      15.599  32.203  84.368  1.00 25.00           C
ATOM     80  CA  ARG    80      12.357  30.268  85.007  1.00 25.00           C
ATOM     81  CA  ASN    81      11.299  32.856  87.624  1.00 25.00           C
ATOM     82  CA  LEU    82      12.025  35.689  85.152  1.00 25.00           C
ATOM     83  CA  ILE    83       9.946  33.913  82.470  1.00 25.00           C
ATOM     84  CA  GLU    84       7.059  33.494  84.950  1.00 25.00           C
ATOM     85  CA  GLN    85       7.257  37.212  85.848  1.00 25.00           C
ATOM     86  CA  LYS    86       6.847  38.240  82.192  1.00 25.00           C
ATOM     87  CA  GLN    87       5.724  38.088  78.541  1.00 25.00           C
ATOM     88  CA  VAL    88       6.267  34.426  77.663  1.00 25.00           C
ATOM     89  CA  ARG    89       6.633  30.641  77.586  1.00 25.00           C
ATOM     90  CA  PRO    90      10.174  29.383  77.935  1.00 25.00           C
ATOM     91  CA  MET    91      13.791  28.757  78.748  1.00 25.00           C
ATOM     92  CA  LEU    92      17.346  27.401  79.345  1.00 25.00           C
ATOM     93  CA  LEU    93      20.299  25.083  79.592  1.00 25.00           C
ATOM     94  CA  LEU    94      19.689  22.533  76.843  1.00 25.00           C
ATOM     95  CA  ASP    95      22.856  20.950  78.271  1.00 25.00           C
ATOM     96  CA  ASP    96      22.358  17.931  80.417  1.00 25.00           C
ATOM     97  CA  ARG    97      19.406  16.328  82.147  1.00 25.00           C
ATOM     98  CA  ALA    98      19.055  19.776  83.775  1.00 25.00           C
ATOM     99  CA  LEU    99      16.984  21.000  80.794  1.00 25.00           C
ATOM    100  CA  PRO   100      14.732  17.912  81.062  1.00 25.00           C
ATOM    101  CA  GLU   101      14.263  18.550  84.809  1.00 25.00           C
ATOM    102  CA  PHE   102      13.355  22.203  84.101  1.00 25.00           C
ATOM    103  CA  THR   103       9.880  20.817  83.548  1.00 25.00           C
ATOM    104  CA  GLY   104       7.936  18.727  80.989  1.00 25.00           C
ATOM    105  CA  VAL   105       8.933  21.383  78.473  1.00 25.00           C
ATOM    106  CA  GLN   106       5.684  21.874  76.557  1.00 25.00           C
ATOM    107  CA  THR   107       6.097  23.768  73.348  1.00 25.00           C
ATOM    108  CA  GLN   108       9.034  22.462  71.405  1.00 25.00           C
ATOM    109  CA  ASP   109       9.469  26.120  70.462  1.00 25.00           C
ATOM    110  CA  PRO   110      11.937  26.173  73.352  1.00 25.00           C
ATOM    111  CA  ASN   111      12.653  29.912  73.585  1.00 25.00           C
ATOM    112  CA  ALA   112      16.342  30.340  74.082  1.00 25.00           C
ATOM    113  CA  VAL   113      19.541  28.467  74.888  1.00 25.00           C
ATOM    114  CA  VAL   114      22.620  26.170  74.985  1.00 25.00           C
ATOM    115  CA  ILE   115      25.522  28.584  75.729  1.00 25.00           C
ATOM    116  CA  GLY   116      26.096  26.342  78.747  1.00 25.00           C
ATOM    117  CA  LEU   117      27.835  23.061  79.554  1.00 25.00           C
ATOM    118  CA  ALA   118      28.382  20.955  76.470  1.00 25.00           C
ATOM    119  CA  PRO   119      30.299  18.749  78.892  1.00 25.00           C
ATOM    120  CA  GLU   120      29.982  16.190  76.097  1.00 25.00           C
ATOM    121  CA  HIS   121      27.244  14.092  74.525  1.00 25.00           C
ATOM    122  CA  PHE   122      27.247  16.643  71.718  1.00 25.00           C
ATOM    123  CA  HIS   123      27.651  16.761  67.893  1.00 25.00           C
ATOM    124  CA  TYR   124      24.103  15.398  68.025  1.00 25.00           C
ATOM    125  CA  GLN   125      20.421  15.472  69.077  1.00 25.00           C
ATOM    126  CA  LEU   126      21.233  18.011  71.827  1.00 25.00           C
ATOM    127  CA  LEU   127      23.112  20.187  69.297  1.00 25.00           C
ATOM    128  CA  ASN   128      20.128  20.025  66.902  1.00 25.00           C
ATOM    129  CA  GLN   129      17.764  21.037  69.741  1.00 25.00           C
ATOM    130  CA  ALA   130      20.049  23.981  70.627  1.00 25.00           C
ATOM    131  CA  PHE   131      20.098  25.079  66.959  1.00 25.00           C
ATOM    132  CA  ARG   132      16.276  24.886  66.824  1.00 25.00           C
ATOM    133  CA  LEU   133      16.034  26.988  70.016  1.00 25.00           C
ATOM    134  CA  LEU   134      18.420  29.582  68.520  1.00 25.00           C
ATOM    135  CA  LEU   135      16.312  29.712  65.324  1.00 25.00           C
ATOM    136  CA  ASP   136      12.655  30.783  65.487  1.00 25.00           C
ATOM    137  CA  GLY   137      11.670  32.278  68.821  1.00 25.00           C
ATOM    138  CA  ALA   138      14.645  33.722  70.756  1.00 25.00           C
ATOM    139  CA  PRO   139      15.688  35.398  74.007  1.00 25.00           C
ATOM    140  CA  LEU   140      18.805  34.341  75.895  1.00 25.00           C
ATOM    141  CA  ILE   141      19.840  31.910  78.544  1.00 25.00           C
ATOM    142  CA  ALA   142      22.808  29.962  79.869  1.00 25.00           C
ATOM    143  CA  ILE   143      26.420  30.955  80.272  1.00 25.00           C
ATOM    144  CA  HIS   144      29.743  29.780  78.687  1.00 25.00           C
ATOM    145  CA  LYS   145      31.992  32.256  76.943  1.00 25.00           C
ATOM    146  CA  ALA   146      34.831  30.319  78.440  1.00 25.00           C
ATOM    147  CA  ARG   147      36.744  27.454  76.725  1.00 25.00           C
ATOM    148  CA  TYR   148      38.539  24.383  78.112  1.00 25.00           C
ATOM    149  CA  TYR   149      37.087  22.441  81.097  1.00 25.00           C
ATOM    150  CA  LYS   150      38.639  19.279  82.414  1.00 25.00           C
ATOM    151  CA  ARG   151      39.221  16.051  84.246  1.00 25.00           C
ATOM    152  CA  LYS   152      41.913  13.467  83.317  1.00 25.00           C
ATOM    153  CA  ASP   153      42.815  14.767  79.849  1.00 25.00           C
ATOM    154  CA  GLY   154      43.402  18.478  80.451  1.00 25.00           C
ATOM    155  CA  LEU   155      41.285  19.694  77.554  1.00 25.00           C
ATOM    156  CA  ALA   156      37.770  18.604  76.570  1.00 25.00           C
ATOM    157  CA  LEU   157      35.200  21.179  75.617  1.00 25.00           C
ATOM    158  CA  GLY   158      33.061  23.104  78.018  1.00 25.00           C
ATOM    159  CA  PRO   159      30.762  25.334  75.981  1.00 25.00           C
ATOM    160  CA  GLY   160      32.528  28.093  73.995  1.00 25.00           C
ATOM    161  CA  PRO   161      32.289  25.984  70.807  1.00 25.00           C
ATOM    162  CA  PHE   162      28.554  25.413  71.435  1.00 25.00           C
ATOM    163  CA  VAL   163      28.038  29.174  71.941  1.00 25.00           C
ATOM    164  CA  THR   164      29.900  29.894  68.673  1.00 25.00           C
ATOM    165  CA  ALA   165      27.718  27.337  66.838  1.00 25.00           C
ATOM    166  CA  LEU   166      24.562  28.959  68.279  1.00 25.00           C
ATOM    167  CA  GLU   167      25.789  32.406  67.149  1.00 25.00           C
ATOM    168  CA  TYR   168      26.468  31.041  63.635  1.00 25.00           C
ATOM    169  CA  ALA   169      22.953  29.522  63.521  1.00 25.00           C
ATOM    170  CA  THR   170      21.444  32.870  64.609  1.00 25.00           C
ATOM    171  CA  ASP   171      23.759  35.903  64.115  1.00 25.00           C
ATOM    172  CA  THR   172      23.129  36.873  67.722  1.00 25.00           C
ATOM    173  CA  LYS   173      20.910  34.320  69.483  1.00 25.00           C
ATOM    174  CA  ALA   174      22.842  33.732  72.704  1.00 25.00           C
ATOM    175  CA  MET   175      23.262  36.721  75.021  1.00 25.00           C
ATOM    176  CA  VAL   176      23.710  34.566  78.056  1.00 25.00           C
ATOM    177  CA  VAL   177      23.121  34.617  81.819  1.00 25.00           C
ATOM    178  CA  GLY   178      25.704  34.134  84.631  1.00 25.00           C
TER
END
