
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  151 (  151),  selected  144 , name T0362TS393_4
# Molecule2: number of CA atoms  144 ( 1169),  selected  144 , name T0362.pdb
# PARAMETERS: T0362TS393_4.T0362.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   139         4 - 142         4.99     5.24
  LCS_AVERAGE:     96.12

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        68 - 95          1.97     5.98
  LCS_AVERAGE:     12.86

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        25 - 45          0.98     5.71
  LCS_AVERAGE:      5.74

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     M       1     M       1      4    5  122     2    4    4    4    4    7   38   64   79   87  101  108  119  124  126  128  132  133  135  136 
LCS_GDT     N       2     N       2      4    5  122     3    4    4    4   11   25   58   77   85  103  110  115  122  124  126  128  132  133  135  136 
LCS_GDT     P       3     P       3      4    5  122     3    4    4    4    5    7   21   33   38   45   72   86   97  101  110  116  125  130  133  136 
LCS_GDT     E       4     E       4      4    5  139     3    4    4    6   14   28   58   75   85  103  112  116  122  124  126  128  132  133  135  136 
LCS_GDT     N       5     N       5      3    5  139     3    4   14   24   34   60   77   92  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     W       6     W       6      4    9  139     3    3   16   23   34   53   77   92  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L       7     L       7      4    9  139     3    4    4   14   34   55   75   91  102  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L       8     L       8      6    9  139     3   11   34   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L       9     L       9      6    9  139     3   10   31   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      10     R      10      6    9  139     4   13   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      11     R      11      6    9  139     4   13   28   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     V      12     V      12      6    9  139     4    9   26   46   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     V      13     V      13      6    9  139     4    7   10   23   52   72   86   94  104  109  114  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      14     R      14      6    9  139     3    7   16   41   62   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     F      15     F      15      3    9  139     3    3    4   10   29   50   75   86   96  102  111  116  122  124  126  128  132  133  135  136 
LCS_GDT     G      16     G      16      3   10  139     3   18   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     D      17     D      17      3   10  139     3    6   14   40   65   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     T      18     T      18      3   10  139     4   11   31   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     D      19     D      19      3   10  139     3   11   31   47   64   79   90   98  104  110  114  119  122  124  126  128  132  133  135  136 
LCS_GDT     A      20     A      20      5   10  139     3    7    8   16   29   41   66   79   88   97  109  114  120  123  126  128  132  133  135  136 
LCS_GDT     A      21     A      21      5   10  139     3    7    8   11   17   27   44   70   78   91   97  110  116  123  126  128  132  133  135  136 
LCS_GDT     G      22     G      22      5   10  139     2    4    8   10   13   18   32   56   77   85   94  107  116  123  126  128  130  133  135  136 
LCS_GDT     V      23     V      23      5   24  139     0    3    7   14   26   44   67   82   92  103  109  116  122  124  126  128  132  133  135  136 
LCS_GDT     M      24     M      24     20   26  139     3   13   31   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H      25     H      25     21   26  139     4   12   32   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     F      26     F      26     21   26  139     4   12   31   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H      27     H      27     21   26  139     3   15   28   48   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     Q      28     Q      28     21   26  139    16   23   34   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L      29     L      29     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     F      30     F      30     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      31     R      31     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     W      32     W      32     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     C      33     C      33     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H      34     H      34     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E      35     E      35     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     S      36     S      36     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     W      37     W      37     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E      38     E      38     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E      39     E      39     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     S      40     S      40     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L      41     L      41     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E      42     E      42     21   26  139    16   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     S      43     S      43     21   26  139    14   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     Y      44     Y      44     21   26  139     8   23   31   50   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     G      45     G      45     21   26  139     3   15   29   50   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L      46     L      46     19   26  139     1    4   15   37   58   74   89   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     N      47     N      47      3   26  139     1    4    4   14   27   60   80   93  104  109  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     P      48     P      48      4   26  139     4   12   25   48   63   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A      49     A      49      4   26  139     4   15   32   50   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     D      50     D      50      4    8  139     4    6   16   24   45   56   74   91  100  110  114  119  122  124  126  128  132  133  135  136 
LCS_GDT     I      51     I      51      5    8  139     4    6    6   12   16   33   57   69   80   90   99  109  119  124  126  128  132  133  135  136 
LCS_GDT     F      52     F      52      5    8  139     3    6    6    7    9   12   25   37   44   51   73   87  101  113  121  125  129  133  135  136 
LCS_GDT     P      53     P      53      5    8  139     3    6    6    7    9   15   17   24   29   37   46   54   64   76   90  105  116  123  127  132 
LCS_GDT     G      54     G      54      5    8  139     3    6    6    7    9   12   12   16   20   22   29   34   35   40   48   57   59   63   88   94 
LCS_GDT     S      55     S      55      5    8  139     3    6    6    7    9   12   14   15   20   28   35   64   77   82   88   92  112  115  128  131 
LCS_GDT     R      56     R      56      4    8  139     3    4    4    4    5   12   29   34   42   48   62   85   89   98  117  121  127  130  134  136 
LCS_GDT     K      57     K      57      4    8  139     3    4    4    6    8   32   39   47   79   87   97  108  116  120  124  127  132  133  135  136 
LCS_GDT     S      58     S      58      4    8  139     3    4    5    8   15   23   24   47   59   69   93  104  115  120  124  127  132  133  135  136 
LCS_GDT     E      59     E      59      3    8  139     3    3    5   10   18   38   51   61   73   87   97  107  116  120  124  127  132  133  135  136 
LCS_GDT     V      60     V      60      4    8  139     0    4   10   20   29   57   62   73   90   99  108  113  119  122  125  128  132  133  135  136 
LCS_GDT     T      61     T      61      4    8  139     3   10   22   36   57   74   86   94  104  109  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     P      62     P      62      4    8  139     3    9   31   48   63   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E      63     E      63      4   12  139     3    4    8   15   41   61   81   96  102  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     V      64     V      64      4   13  139     3    4   13   21   46   67   88   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A      65     A      65      5   13  139     3    5   16   20   34   55   74   90  101  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L      66     L      66      6   13  139     3    4   11   19   26   52   66   84  100  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     P      67     P      67      6   25  139     3    7   16   29   56   69   88   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     I      68     I      68      6   28  139     3    8   28   44   65   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     I      69     I      69      6   28  139     3    7   18   43   62   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H      70     H      70      6   28  139     3   13   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     C      71     C      71      7   28  139     3   22   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     Q      72     Q      72      8   28  139     2   13   28   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A      73     A      73      8   28  139     5   19   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     D      74     D      74      8   28  139     4   17   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     F      75     F      75      8   28  139     4   17   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      76     R      76      8   28  139     5   20   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      77     R      77      8   28  139     4   19   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     P      78     P      78      8   28  139     3   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     I      79     I      79      8   28  139     4   23   34   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H      80     H      80      9   28  139     3   12   28   44   65   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     T      81     T      81      9   28  139     3    9   26   47   65   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     G      82     G      82      9   28  139     5   15   34   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     D      83     D      83      9   28  139     4   16   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A      84     A      84      9   28  139     3   13   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L      85     L      85      9   28  139     3   11   28   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A      86     A      86      9   28  139     3    7   28   47   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     M      87     M      87      9   28  139     4    7   16   39   63   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E      88     E      88      9   28  139     4   11   30   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L      89     L      89      7   28  139     4   15   34   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      90     R      90      7   28  139     4    7   25   45   62   79   88   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     P      91     P      91      3   28  139     3    7   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E      92     E      92      4   28  139     4   13   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R      93     R      93      4   28  139     3   17   27   47   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L      94     L      94      4   28  139     4   17   34   53   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     N      95     N      95      4   28  139    16   23   31   48   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     P      96     P      96      6   18  139     4    6   10   19   29   47   71   83  100  109  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     N      97     N      97      6   22  139     4   15   25   39   60   76   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     S      98     S      98      6   23  139     4   10   29   44   65   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     F      99     F      99      6   23  139     5   22   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     Q     100     Q     100      6   23  139     4   14   34   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     V     101     V     101      6   23  139     4   11   26   50   63   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H     102     H     102      6   23  139     4    9   29   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     F     103     F     103      6   23  139     4    7   16   25   49   74   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E     104     E     104      6   23  139    15   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     F     105     F     105      9   23  139     3   10   16   42   61   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R     106     R     106      9   23  139     3   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     C     107     C     107      9   23  139     4   14   31   47   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E     108     E     108      9   23  139     4   10   30   47   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E     109     E     109      9   23  139     3    5   15   29   49   75   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     Q     110     Q     110      9   23  139     4   12   32   50   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     I     111     I     111      9   23  139     5   17   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A     112     A     112      9   23  139     4   17   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A     113     A     113      9   23  139     4   23   35   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H     114     H     114      4   23  139     3    4   28   46   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A     115     A     115      4   23  139     3   13   34   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L     116     L     116      4   23  139     3   12   28   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     I     117     I     117      4   23  139     3   10   25   53   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R     118     R     118      3   23  139     3   10   14   36   57   78   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H     119     H     119      4   23  139     3    4    7   15   30   54   74   91  100  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L     120     L     120      4   23  139     3    4    7   19   32   54   74   91  101  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A     121     A     121      4   23  139     3    5   16   39   59   77   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     I     122     I     122      4    7  139     3    4    7   15   25   47   71   83  100  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     N     123     N     123      4    7  139     3    3    5    8   14   16   26   32   43   69   78   97  114  120  123  125  129  130  132  134 
LCS_GDT     A     124     A     124      4    9  139     3    3    7   25   54   70   87   96  102  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     Q     125     Q     125      4    9  139     3    3    9   17   31   55   73   86  100  110  115  119  122  124  126  128  130  133  135  136 
LCS_GDT     T     126     T     126      4   11  139     3    3    4   10   26   36   58   81   95  106  115  119  122  124  126  128  130  133  134  136 
LCS_GDT     R     127     R     127      4   11  139     3   15   25   43   61   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     H     128     H     128      5   11  139     3   10   22   43   60   78   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R     129     R     129      5   11  139     3   10   22   43   60   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     C     130     C     130      5   11  139     3    8   27   44   65   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A     131     A     131      5   11  139     3   23   31   48   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L     132     L     132      5   11  139     3   10   27   48   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     P     133     P     133      5   11  139     3    8   23   42   63   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     E     134     E     134      5   11  139     3    7   14   26   41   64   81   94  104  109  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     G     135     G     135      5   11  139     3    4   11   19   29   46   75   84   95  106  112  117  122  124  126  128  132  133  135  136 
LCS_GDT     I     136     I     136      9   11  139     8   10   15   39   59   77   89   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     D     137     D     137      9    9  139     8   13   31   54   67   79   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     R     138     R     138      9    9  139     8    8    8   22   45   75   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     W     139     W     139      9    9  139     8   10   14   22   35   60   79   93  104  109  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     L     140     L     140      9    9  139     8    8    8    9   11   19   36   43   65   88  109  118  122  124  126  128  132  133  135  136 
LCS_GDT     E     141     E     141      9    9  139     8    8    9   42   61   77   90   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     A     142     A     142      9    9  139     8    8   13   33   56   72   89   98  104  110  115  119  122  124  126  128  132  133  135  136 
LCS_GDT     S     143     S     143      9    9  122     8    8    8   12   19   24   36   43   50   54   67   80   93  104  117  126  131  133  135  136 
LCS_GDT     G     144     G     144      9    9  122     0    3    3    9   11   11   13   17   19   23   42   59   67   74   90  107  114  128  132  133 
LCS_AVERAGE  LCS_A:  38.24  (   5.74   12.86   96.12 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     23     35     54     67     79     90     98    104    110    115    119    122    124    126    128    132    133    135    136 
GDT PERCENT_CA  11.11  15.97  24.31  37.50  46.53  54.86  62.50  68.06  72.22  76.39  79.86  82.64  84.72  86.11  87.50  88.89  91.67  92.36  93.75  94.44
GDT RMS_LOCAL    0.31   0.60   1.10   1.41   1.67   1.90   2.20   2.38   2.58   2.83   3.03   3.14   3.29   3.36   3.47   3.60   4.00   4.07   4.18   4.24
GDT RMS_ALL_CA   5.58   5.72   5.50   5.54   5.51   5.53   5.48   5.43   5.39   5.47   5.45   5.42   5.38   5.38   5.41   5.40   5.27   5.27   5.27   5.28

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          8.940
LGA    N       2      N       2          7.741
LGA    P       3      P       3         12.085
LGA    E       4      E       4          6.789
LGA    N       5      N       5          5.671
LGA    W       6      W       6          5.587
LGA    L       7      L       7          5.665
LGA    L       8      L       8          2.919
LGA    L       9      L       9          2.158
LGA    R      10      R      10          1.785
LGA    R      11      R      11          2.450
LGA    V      12      V      12          3.247
LGA    V      13      V      13          4.566
LGA    R      14      R      14          3.877
LGA    F      15      F      15          6.443
LGA    G      16      G      16          2.481
LGA    D      17      D      17          3.137
LGA    T      18      T      18          3.454
LGA    D      19      D      19          4.401
LGA    A      20      A      20          9.365
LGA    A      21      A      21         10.705
LGA    G      22      G      22         10.642
LGA    V      23      V      23          7.073
LGA    M      24      M      24          2.812
LGA    H      25      H      25          2.528
LGA    F      26      F      26          2.521
LGA    H      27      H      27          2.268
LGA    Q      28      Q      28          1.269
LGA    L      29      L      29          1.208
LGA    F      30      F      30          1.029
LGA    R      31      R      31          0.934
LGA    W      32      W      32          1.036
LGA    C      33      C      33          0.926
LGA    H      34      H      34          0.901
LGA    E      35      E      35          0.751
LGA    S      36      S      36          0.621
LGA    W      37      W      37          0.743
LGA    E      38      E      38          0.700
LGA    E      39      E      39          0.421
LGA    S      40      S      40          0.539
LGA    L      41      L      41          1.079
LGA    E      42      E      42          0.868
LGA    S      43      S      43          1.134
LGA    Y      44      Y      44          1.812
LGA    G      45      G      45          1.803
LGA    L      46      L      46          3.919
LGA    N      47      N      47          4.917
LGA    P      48      P      48          2.930
LGA    A      49      A      49          1.509
LGA    D      50      D      50          7.081
LGA    I      51      I      51          9.133
LGA    F      52      F      52         12.097
LGA    P      53      P      53         16.602
LGA    G      54      G      54         21.024
LGA    S      55      S      55         16.359
LGA    R      56      R      56         14.063
LGA    K      57      K      57         10.186
LGA    S      58      S      58         11.319
LGA    E      59      E      59         10.688
LGA    V      60      V      60          8.515
LGA    T      61      T      61          5.604
LGA    P      62      P      62          2.956
LGA    E      63      E      63          5.179
LGA    V      64      V      64          4.753
LGA    A      65      A      65          6.274
LGA    L      66      L      66          6.510
LGA    P      67      P      67          4.399
LGA    I      68      I      68          2.356
LGA    I      69      I      69          2.909
LGA    H      70      H      70          1.642
LGA    C      71      C      71          1.201
LGA    Q      72      Q      72          2.848
LGA    A      73      A      73          1.254
LGA    D      74      D      74          1.596
LGA    F      75      F      75          1.440
LGA    R      76      R      76          0.969
LGA    R      77      R      77          1.642
LGA    P      78      P      78          0.950
LGA    I      79      I      79          0.941
LGA    H      80      H      80          2.312
LGA    T      81      T      81          2.987
LGA    G      82      G      82          2.532
LGA    D      83      D      83          2.180
LGA    A      84      A      84          2.152
LGA    L      85      L      85          2.660
LGA    A      86      A      86          2.813
LGA    M      87      M      87          3.293
LGA    E      88      E      88          2.361
LGA    L      89      L      89          2.646
LGA    R      90      R      90          3.883
LGA    P      91      P      91          1.887
LGA    E      92      E      92          1.870
LGA    R      93      R      93          1.997
LGA    L      94      L      94          2.805
LGA    N      95      N      95          1.152
LGA    P      96      P      96          5.781
LGA    N      97      N      97          3.390
LGA    S      98      S      98          2.273
LGA    F      99      F      99          1.222
LGA    Q     100      Q     100          2.153
LGA    V     101      V     101          2.767
LGA    H     102      H     102          2.683
LGA    F     103      F     103          3.446
LGA    E     104      E     104          0.479
LGA    F     105      F     105          2.638
LGA    R     106      R     106          1.015
LGA    C     107      C     107          1.825
LGA    E     108      E     108          2.215
LGA    E     109      E     109          3.881
LGA    Q     110      Q     110          1.748
LGA    I     111      I     111          1.344
LGA    A     112      A     112          1.286
LGA    A     113      A     113          0.911
LGA    H     114      H     114          2.314
LGA    A     115      A     115          1.909
LGA    L     116      L     116          2.261
LGA    I     117      I     117          2.464
LGA    R     118      R     118          3.675
LGA    H     119      H     119          5.855
LGA    L     120      L     120          5.863
LGA    A     121      A     121          3.895
LGA    I     122      I     122          6.420
LGA    N     123      N     123         10.229
LGA    A     124      A     124          4.657
LGA    Q     125      Q     125          6.908
LGA    T     126      T     126          7.820
LGA    R     127      R     127          3.570
LGA    H     128      H     128          3.752
LGA    R     129      R     129          3.705
LGA    C     130      C     130          2.695
LGA    A     131      A     131          2.137
LGA    L     132      L     132          2.337
LGA    P     133      P     133          2.981
LGA    E     134      E     134          4.386
LGA    G     135      G     135          6.321
LGA    I     136      I     136          3.532
LGA    D     137      D     137          2.962
LGA    R     138      R     138          3.682
LGA    W     139      W     139          5.514
LGA    L     140      L     140          6.145
LGA    E     141      E     141          3.884
LGA    A     142      A     142          3.930
LGA    S     143      S     143          9.271
LGA    G     144      G     144         10.688

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  151  144    4.0     98    2.38    52.604    46.154     3.946

LGA_LOCAL      RMSD =  2.384  Number of atoms =   98  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.424  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  5.231  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.582287 * X  +  -0.380147 * Y  +  -0.718631 * Z  +  39.338329
  Y_new =  -0.703342 * X  +   0.207773 * Y  +  -0.679809 * Z  +  45.901779
  Z_new =   0.407739 * X  +   0.901287 * Y  +  -0.146390 * Z  +  12.520034 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.731813   -1.409779  [ DEG:    99.2256    -80.7744 ]
  Theta =  -0.419977   -2.721616  [ DEG:   -24.0629   -155.9371 ]
  Phi   =  -0.879282    2.262311  [ DEG:   -50.3791    129.6209 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0362TS393_4                                  
REMARK     2: T0362.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0362TS393_4.T0362.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  151  144   4.0   98   2.38  46.154     5.23
REMARK  ---------------------------------------------------------- 
MOLECULE T0362TS393_4
PFRMAT TS
TARGET T0362
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      41.384  45.917  37.970  1.00 25.00           C
ATOM      2  CA  ASN     2      41.492  48.230  34.987  1.00 25.00           C
ATOM      3  CA  PRO     3      41.468  51.939  34.321  1.00 25.00           C
ATOM      4  CA  GLU     4      40.965  51.585  30.557  1.00 25.00           C
ATOM      5  CA  ASN     5      38.622  52.306  27.658  1.00 25.00           C
ATOM      6  CA  TRP     6      38.094  50.405  24.379  1.00 25.00           C
ATOM      7  CA  LEU     7      39.867  53.272  22.758  1.00 25.00           C
ATOM      8  CA  LEU     8      42.337  50.693  21.600  1.00 25.00           C
ATOM      9  CA  LEU     9      43.050  51.011  17.894  1.00 25.00           C
ATOM     10  CA  ARG    10      45.690  53.746  17.820  1.00 25.00           C
ATOM     11  CA  ARG    11      47.120  54.487  14.362  1.00 25.00           C
ATOM     12  CA  VAL    12      48.916  57.187  12.407  1.00 25.00           C
ATOM     13  CA  VAL    13      47.863  56.863   8.768  1.00 25.00           C
ATOM     14  CA  ARG    14      50.290  59.203   7.083  1.00 25.00           C
ATOM     15  CA  PHE    15      52.207  56.912   4.756  1.00 25.00           C
ATOM     16  CA  GLY    16      54.152  58.722   2.075  1.00 25.00           C
ATOM     17  CA  ASP    17      51.464  61.418   2.568  1.00 25.00           C
ATOM     18  CA  THR    18      48.668  62.643   0.208  1.00 25.00           C
ATOM     19  CA  ASP    19      47.520  62.618  -3.460  1.00 25.00           C
ATOM     20  CA  ALA    20      46.493  60.886  -6.722  1.00 25.00           C
ATOM     21  CA  ALA    21      42.854  60.418  -5.801  1.00 25.00           C
ATOM     22  CA  GLY    22      42.385  62.264  -2.501  1.00 25.00           C
ATOM     23  CA  VAL    23      41.825  61.821   1.259  1.00 25.00           C
ATOM     24  CA  MET    24      44.813  60.358   3.094  1.00 25.00           C
ATOM     25  CA  HIS    25      45.702  58.481  -0.136  1.00 25.00           C
ATOM     26  CA  PHE    26      42.392  56.623   0.267  1.00 25.00           C
ATOM     27  CA  HIS    27      44.936  53.780  -0.062  1.00 25.00           C
ATOM     28  CA  GLN    28      46.838  55.097   2.990  1.00 25.00           C
ATOM     29  CA  LEU    29      43.574  55.257   4.986  1.00 25.00           C
ATOM     30  CA  PHE    30      42.746  51.659   3.968  1.00 25.00           C
ATOM     31  CA  ARG    31      46.239  50.522   5.053  1.00 25.00           C
ATOM     32  CA  TRP    32      45.795  52.290   8.422  1.00 25.00           C
ATOM     33  CA  CYS    33      42.397  50.587   8.896  1.00 25.00           C
ATOM     34  CA  HIS    34      43.962  47.186   8.090  1.00 25.00           C
ATOM     35  CA  GLU    35      46.758  47.845  10.625  1.00 25.00           C
ATOM     36  CA  SER    36      44.162  48.792  13.277  1.00 25.00           C
ATOM     37  CA  TRP    37      42.209  45.579  12.549  1.00 25.00           C
ATOM     38  CA  GLU    38      45.423  43.521  12.877  1.00 25.00           C
ATOM     39  CA  GLU    39      46.201  45.224  16.219  1.00 25.00           C
ATOM     40  CA  SER    40      42.658  44.464  17.458  1.00 25.00           C
ATOM     41  CA  LEU    41      43.052  40.801  16.414  1.00 25.00           C
ATOM     42  CA  GLU    42      46.399  40.607  18.265  1.00 25.00           C
ATOM     43  CA  SER    43      44.783  42.113  21.394  1.00 25.00           C
ATOM     44  CA  TYR    44      41.939  39.557  21.184  1.00 25.00           C
ATOM     45  CA  GLY    45      43.721  36.428  22.397  1.00 25.00           C
ATOM     46  CA  LEU    46      40.943  35.088  20.250  1.00 25.00           C
ATOM     47  CA  ASN    47      43.103  35.480  17.188  1.00 25.00           C
ATOM     48  CA  PRO    48      46.381  34.705  15.419  1.00 25.00           C
ATOM     49  CA  ALA    49      49.937  33.833  14.295  1.00 25.00           C
ATOM     50  CA  ASP    50      51.252  34.544  17.821  1.00 25.00           C
ATOM     51  CA  ILE    51      48.457  32.957  19.860  1.00 25.00           C
ATOM     52  CA  PHE    52      44.869  31.964  20.353  1.00 25.00           C
ATOM     53  CA  PRO    53      44.379  28.263  21.278  1.00 25.00           C
ATOM     54  CA  GLY    54      41.259  26.046  21.387  1.00 25.00           C
ATOM     55  CA  SER    55      41.493  26.230  17.551  1.00 25.00           C
ATOM     56  CA  ARG    56      44.927  27.189  16.307  1.00 25.00           C
ATOM     57  CA  LYS    57      47.453  24.349  15.639  1.00 25.00           C
ATOM     58  CA  SER    58      44.361  22.100  15.949  1.00 25.00           C
ATOM     59  CA  GLU    59      42.195  23.573  13.270  1.00 25.00           C
ATOM     60  CA  VAL    60      42.303  23.335   9.432  1.00 25.00           C
ATOM     61  CA  THR    61      44.786  26.194   9.789  1.00 25.00           C
ATOM     62  CA  PRO    62      45.402  29.680  11.180  1.00 25.00           C
ATOM     63  CA  GLU    63      45.297  31.579   7.952  1.00 25.00           C
ATOM     64  CA  VAL    64      42.196  33.410   9.114  1.00 25.00           C
ATOM     65  CA  ALA    65      43.899  36.790   8.519  1.00 25.00           C
ATOM     66  CA  LEU    66      43.110  40.504   8.080  1.00 25.00           C
ATOM     67  CA  PRO    67      41.697  40.576   4.488  1.00 25.00           C
ATOM     68  CA  ILE    68      39.204  42.983   2.899  1.00 25.00           C
ATOM     69  CA  ILE    69      36.017  43.745   0.963  1.00 25.00           C
ATOM     70  CA  HIS    70      32.854  45.675   1.718  1.00 25.00           C
ATOM     71  CA  CYS    71      34.391  49.008   2.775  1.00 25.00           C
ATOM     72  CA  GLN    72      31.527  51.383   3.493  1.00 25.00           C
ATOM     73  CA  ALA    73      34.192  54.112   3.723  1.00 25.00           C
ATOM     74  CA  ASP    74      32.699  57.469   4.877  1.00 25.00           C
ATOM     75  CA  PHE    75      35.333  60.261   4.873  1.00 25.00           C
ATOM     76  CA  ARG    76      34.213  63.694   6.099  1.00 25.00           C
ATOM     77  CA  ARG    77      37.593  65.285   6.996  1.00 25.00           C
ATOM     78  CA  PRO    78      41.060  66.684   7.700  1.00 25.00           C
ATOM     79  CA  ILE    79      43.711  64.549   9.413  1.00 25.00           C
ATOM     80  CA  HIS    80      45.752  67.618  10.228  1.00 25.00           C
ATOM     81  CA  THR    81      48.489  66.324   7.994  1.00 25.00           C
ATOM     82  CA  GLY    82      50.489  65.426  11.086  1.00 25.00           C
ATOM     83  CA  ASP    83      47.763  63.165  12.382  1.00 25.00           C
ATOM     84  CA  ALA    84      46.743  60.803  15.237  1.00 25.00           C
ATOM     85  CA  LEU    85      43.899  58.906  13.494  1.00 25.00           C
ATOM     86  CA  ALA    86      41.777  56.797  15.843  1.00 25.00           C
ATOM     87  CA  MET    87      41.089  53.735  13.646  1.00 25.00           C
ATOM     88  CA  GLU    88      38.534  52.384  16.130  1.00 25.00           C
ATOM     89  CA  LEU    89      38.460  48.647  16.660  1.00 25.00           C
ATOM     90  CA  ARG    90      35.743  45.918  16.514  1.00 25.00           C
ATOM     91  CA  PRO    91      32.866  43.457  16.223  1.00 25.00           C
ATOM     92  CA  GLU    92      29.222  43.902  15.216  1.00 25.00           C
ATOM     93  CA  ARG    93      28.592  41.151  12.589  1.00 25.00           C
ATOM     94  CA  LEU    94      28.550  37.587  11.241  1.00 25.00           C
ATOM     95  CA  ASN    95      26.122  36.131   8.728  1.00 25.00           C
ATOM     96  CA  PRO    96      27.310  34.855   5.362  1.00 25.00           C
ATOM     97  CA  ASN    97      31.065  34.987   4.853  1.00 25.00           C
ATOM     98  CA  SER    98      32.227  38.230   6.414  1.00 25.00           C
ATOM     99  CA  PHE    99      32.615  40.333   9.571  1.00 25.00           C
ATOM    100  CA  GLN   100      32.764  43.758  11.154  1.00 25.00           C
ATOM    101  CA  VAL   101      32.042  47.200  12.724  1.00 25.00           C
ATOM    102  CA  HIS   102      34.676  49.804  13.529  1.00 25.00           C
ATOM    103  CA  PHE   103      32.993  53.258  13.518  1.00 25.00           C
ATOM    104  CA  GLU   104      35.890  55.781  13.373  1.00 25.00           C
ATOM    105  CA  PHE   105      37.066  58.508  15.698  1.00 25.00           C
ATOM    106  CA  ARG   106      39.030  61.791  15.901  1.00 25.00           C
ATOM    107  CA  CYS   107      39.913  65.178  17.305  1.00 25.00           C
ATOM    108  CA  GLU   108      39.215  68.561  18.857  1.00 25.00           C
ATOM    109  CA  GLU   109      35.410  68.259  18.995  1.00 25.00           C
ATOM    110  CA  GLN   110      34.509  66.685  15.614  1.00 25.00           C
ATOM    111  CA  ILE   111      34.106  62.960  14.824  1.00 25.00           C
ATOM    112  CA  ALA   112      36.352  62.807  11.754  1.00 25.00           C
ATOM    113  CA  ALA   113      36.511  59.593   9.695  1.00 25.00           C
ATOM    114  CA  HIS   114      36.791  55.970   8.390  1.00 25.00           C
ATOM    115  CA  ALA   115      36.149  52.208   8.239  1.00 25.00           C
ATOM    116  CA  LEU   116      32.753  50.605   8.955  1.00 25.00           C
ATOM    117  CA  ILE   117      34.621  47.397   8.125  1.00 25.00           C
ATOM    118  CA  ARG   118      36.401  44.270   6.892  1.00 25.00           C
ATOM    119  CA  HIS   119      37.462  42.252   9.900  1.00 25.00           C
ATOM    120  CA  LEU   120      37.625  39.416   7.438  1.00 25.00           C
ATOM    121  CA  ALA   121      38.048  35.605   7.069  1.00 25.00           C
ATOM    122  CA  ILE   122      40.607  35.537   4.312  1.00 25.00           C
ATOM    123  CA  ASN   123      44.121  36.366   3.127  1.00 25.00           C
ATOM    124  CA  ALA   124      43.818  33.248   0.943  1.00 25.00           C
ATOM    125  CA  GLN   125      46.271  31.905  -1.534  1.00 25.00           C
ATOM    126  CA  THR   126      44.059  31.056  -4.480  1.00 25.00           C
ATOM    127  CA  ARG   127      41.238  29.616  -2.415  1.00 25.00           C
ATOM    128  CA  HIS   128      37.951  28.709  -0.659  1.00 25.00           C
ATOM    129  CA  ARG   129      35.891  31.110   1.433  1.00 25.00           C
ATOM    130  CA  CYS   130      34.649  30.389   4.955  1.00 25.00           C
ATOM    131  CA  ALA   131      31.751  29.264   7.050  1.00 25.00           C
ATOM    132  CA  LEU   132      32.607  32.155   9.290  1.00 25.00           C
ATOM    133  CA  PRO   133      35.085  29.917  11.106  1.00 25.00           C
ATOM    134  CA  GLU   134      33.550  28.203  14.132  1.00 25.00           C
ATOM    135  CA  GLY   135      33.236  31.519  15.990  1.00 25.00           C
ATOM    136  CA  ILE   136      33.983  35.175  15.652  1.00 25.00           C
ATOM    137  CA  ASP   137      35.696  34.665  19.040  1.00 25.00           C
ATOM    138  CA  ARG   138      34.694  38.204  20.108  1.00 25.00           C
ATOM    139  CA  TRP   139      31.075  37.524  19.053  1.00 25.00           C
ATOM    140  CA  LEU   140      31.080  34.259  21.056  1.00 25.00           C
ATOM    141  CA  GLU   141      32.442  36.111  24.119  1.00 25.00           C
ATOM    142  CA  ALA   142      29.710  38.771  23.757  1.00 25.00           C
ATOM    143  CA  SER   143      27.042  36.033  23.524  1.00 25.00           C
ATOM    144  CA  GLY   144      25.071  33.873  25.944  1.00 25.00           C
ATOM    145  CA  VAL   145      25.009  32.319  29.456  1.00 25.00           C
ATOM    146  CA  GLY   146      23.180  35.287  31.085  1.00 25.00           C
ATOM    147  CA  LYS   147      24.990  37.556  33.541  1.00 25.00           C
ATOM    148  CA  ILE   148      24.771  41.342  33.289  1.00 25.00           C
ATOM    149  CA  GLY   149      21.582  43.318  32.868  1.00 25.00           C
ATOM    150  CA  SER   150      21.230  47.017  32.100  1.00 25.00           C
ATOM    151  CA  ILE   151      22.333  50.451  30.848  1.00 25.00           C
TER
END
