
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  125 (  125),  selected  125 , name T0367TS393_3
# Molecule2: number of CA atoms  125 ( 1016),  selected  125 , name T0367.pdb
# PARAMETERS: T0367TS393_3.T0367.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    50        76 - 125         4.90    21.90
  LCS_AVERAGE:     30.83

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         1 - 25          1.45    37.95
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          1.72    37.16
  LONGEST_CONTINUOUS_SEGMENT:    25        25 - 49          1.89    26.55
  LONGEST_CONTINUOUS_SEGMENT:    25        98 - 122         1.68    22.77
  LONGEST_CONTINUOUS_SEGMENT:    25        99 - 123         1.75    23.02
  LCS_AVERAGE:     16.95

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    37.65
  LONGEST_CONTINUOUS_SEGMENT:    24        99 - 122         0.81    23.15
  LCS_AVERAGE:     14.04

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     M       1     M       1      3   25   30     3    3    3    4    5    9   13   16   20   25   25   25   25   26   27   28   28   28   34   36 
LCS_GDT     D       2     D       2     24   25   30     7   17   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     E       3     E       3     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   33   36   37 
LCS_GDT     L       4     L       4     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     E       5     E       5     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     L       6     L       6     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     R       7     R       7     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     I       8     I       8     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     R       9     R       9     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     K      10     K      10     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     A      11     A      11     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     E      12     E      12     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     K      13     K      13     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     L      14     L      14     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     V      15     V      15     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     Q      16     Q      16     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   38   39 
LCS_GDT     D      17     D      17     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   39 
LCS_GDT     A      18     A      18     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   37   39 
LCS_GDT     K      19     K      19     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   34   37   41   46   50   52 
LCS_GDT     K      20     K      20     24   25   31    16   22   24   24   24   24   24   24   24   25   27   28   29   31   33   37   38   41   48   50 
LCS_GDT     E      21     E      21     24   25   31    16   22   24   24   24   24   24   24   24   25   27   28   30   35   37   37   38   38   41   43 
LCS_GDT     F      22     F      22     24   25   31    16   22   24   24   24   24   24   24   24   25   27   28   31   35   37   37   38   45   49   51 
LCS_GDT     E      23     E      23     24   25   31    16   22   24   24   24   24   24   25   28   28   29   30   31   35   37   38   41   46   50   52 
LCS_GDT     M      24     M      24     24   25   33    16   22   24   24   24   24   24   24   24   27   29   29   31   35   37   37   38   38   41   44 
LCS_GDT     G      25     G      25     24   25   33    16   22   24   24   24   24   24   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     L      26     L      26     23   25   33    14   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     Y      27     Y      27     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   46 
LCS_GDT     E      28     E      28     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   43 
LCS_GDT     R      29     R      29     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     C      30     C      30     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   46 
LCS_GDT     C      31     C      31     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     S      32     S      32     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   43 
LCS_GDT     T      33     T      33     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     A      34     A      34     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     Y      35     Y      35     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     Y      36     Y      36     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   40   42   44 
LCS_GDT     A      37     A      37     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     M      38     M      38     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     F      39     F      39     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     H      40     H      40     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     A      41     A      41     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   42   44   46 
LCS_GDT     A      42     A      42     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     K      43     K      43     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     A      44     A      44     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     M      45     M      45     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     L      46     L      46     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   42   44   46 
LCS_GDT     L      47     L      47     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   42   44   46 
LCS_GDT     G      48     G      48     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   42   43   46 
LCS_GDT     Y      49     Y      49      3   25   33     3    3    3    5    6   12   21   26   28   28   29   30   31   35   37   37   38   39   42   46 
LCS_GDT     G      50     G      50      4    7   33     3    4    4    5    6    8    9   13   16   20   24   28   31   35   37   37   38   39   42   46 
LCS_GDT     R      51     R      51      4    7   33     3    4    4    5    6    8    9   11   15   19   22   27   31   33   34   36   37   39   42   46 
LCS_GDT     D      52     D      52      4    7   33     3    4    4    5    6    8   11   14   17   22   26   27   31   33   34   36   36   39   42   46 
LCS_GDT     S      53     S      53      4    7   33     3    4    4    5    6    8    9   14   17   22   26   27   31   33   34   36   39   42   44   46 
LCS_GDT     K      54     K      54      4    7   33     3    3    4    5    6    8   11   14   18   22   26   27   31   33   35   37   40   42   44   46 
LCS_GDT     T      55     T      55      4   13   33     3    3    4    5    8   12   13   14   18   22   26   28   31   33   35   37   40   44   46   50 
LCS_GDT     H      56     H      56      4   13   33     3    3    4    5    6    9   13   13   16   21   26   28   31   33   35   37   40   44   46   50 
LCS_GDT     R      57     R      57     11   13   30    10   11   11   11   13   13   13   14   15   18   25   28   30   33   35   40   43   46   49   53 
LCS_GDT     G      58     G      58     11   13   28    10   11   11   11   13   13   13   15   16   20   25   28   30   33   35   40   43   46   51   53 
LCS_GDT     T      59     T      59     11   13   28    10   11   11   11   13   13   13   15   16   20   25   28   30   33   35   40   43   46   47   53 
LCS_GDT     I      60     I      60     11   13   28    10   11   11   11   13   13   13   15   16   19   23   28   30   33   35   40   43   47   51   53 
LCS_GDT     Y      61     Y      61     11   13   28    10   11   11   11   13   13   13   15   16   20   25   28   30   33   35   40   43   47   51   53 
LCS_GDT     L      62     L      62     11   13   28    10   11   11   11   13   13   13   15   16   20   25   28   30   33   35   40   43   47   51   53 
LCS_GDT     I      63     I      63     11   13   28    10   11   11   11   13   13   13   15   16   19   25   28   30   33   35   40   43   47   51   53 
LCS_GDT     W      64     W      64     11   13   28    10   11   11   11   13   13   13   15   16   20   25   28   30   33   35   40   43   47   51   53 
LCS_GDT     E      65     E      65     11   13   28    10   11   11   11   13   13   13   15   16   20   25   28   30   33   35   40   43   47   51   53 
LCS_GDT     C      66     C      66     11   13   28    10   11   11   11   13   13   13   15   16   19   25   28   30   32   34   36   43   46   51   53 
LCS_GDT     R      67     R      67     11   13   28     9   11   11   11   13   13   13   15   16   19   25   28   30   32   35   36   43   47   51   53 
LCS_GDT     E      68     E      68      4   13   28     4    4    4    9   13   13   13   15   16   20   25   28   30   33   35   40   43   47   51   53 
LCS_GDT     E      69     E      69      4   13   28     4    4    7    9   13   13   13   15   16   19   23   27   30   32   35   40   43   47   51   53 
LCS_GDT     L      70     L      70      3   22   28     3    3    6    7   10   12   13   16   23   23   26   35   40   43   47   50   52   55   55   56 
LCS_GDT     G      71     G      71      4   22   28     1    3    6    8   12   21   22   22   26   32   38   41   45   50   53   54   55   55   55   56 
LCS_GDT     L      72     L      72      4   22   28     4   17   17   18   19   21   22   22   25   29   35   41   46   50   53   54   55   55   55   56 
LCS_GDT     S      73     S      73     15   22   28     3    4    7   11   18   21   22   25   29   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     D      74     D      74     17   22   28     7   17   17   18   19   21   22   25   29   33   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     D      75     D      75     17   22   28     7   17   17   18   19   21   22   22   23   26   31   35   42   45   50   54   55   55   55   56 
LCS_GDT     D      76     D      76     17   22   50    10   17   17   18   19   21   22   22   23   25   33   40   45   50   53   54   55   55   55   56 
LCS_GDT     C      77     C      77     17   22   50    10   17   17   18   19   21   22   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     S      78     S      78     17   22   50    10   17   17   18   19   24   25   25   29   33   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     K      79     K      79     17   22   50     7   17   17   18   19   24   25   26   28   28   31   36   42   47   53   54   55   55   55   56 
LCS_GDT     L      80     L      80     17   22   50     9   17   17   18   19   21   22   25   30   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     S      81     S      81     17   22   50    10   17   17   18   19   21   24   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     R      82     R      82     17   22   50     9   17   17   18   19   21   22   25   29   33   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     A      83     A      83     17   22   50    10   17   17   18   19   21   22   25   30   34   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     F      84     F      84     17   22   50    10   17   17   18   23   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     D      85     D      85     17   22   50    10   17   17   18   19   21   22   23   29   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     L      86     L      86     17   22   50    10   17   17   18   19   21   22   27   30   34   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     R      87     R      87     17   22   50    10   17   17   20   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     E      88     E      88     17   22   50    10   17   17   18   19   21   22   22   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     E      89     E      89     17   22   50     7   17   17   18   19   21   22   22   29   34   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     S      90     S      90     17   22   50     3    4   11   18   19   21   24   27   30   34   37   43   46   47   53   54   55   55   55   56 
LCS_GDT     D      91     D      91      4   22   50     3    5    8   16   23   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     Y      92     Y      92      3   22   50     3    4    4    8   18   20   22   22   30   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     G      93     G      93      3    5   50     3    3    4    4   11   17   22   26   30   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     I      94     I      94      3    6   50     3    4    4    5    6    9   21   26   30   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     Y      95     Y      95      3    6   50     3    4    4    5   10   16   22   26   29   33   38   41   47   50   53   54   55   55   55   56 
LCS_GDT     K      96     K      96      4    6   50     3    4    4    5    6    8   18   24   29   32   35   41   42   47   53   54   55   55   55   56 
LCS_GDT     E      97     E      97      4    6   50     3    3    4    5    9   17   22   26   29   33   38   41   47   50   53   54   55   55   55   56 
LCS_GDT     V      98     V      98      4   25   50     3    3    4    5    7   13   17   25   29   32   35   41   43   49   53   54   55   55   55   56 
LCS_GDT     S      99     S      99     24   25   50     3    4   17   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     K     100     K     100     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     D     101     D     101     24   25   50    14   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     L     102     L     102     24   25   50    14   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     A     103     A     103     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     I     104     I     104     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     K     105     K     105     24   25   50    14   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     I     106     I     106     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     L     107     L     107     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     K     108     K     108     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     D     109     D     109     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     A     110     A     110     24   25   50    14   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     E     111     E     111     24   25   50    14   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     I     112     I     112     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     F     113     F     113     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     V     114     V     114     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     Q     115     Q     115     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     K     116     K     116     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     A     117     A     117     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     K     118     K     118     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     N     119     N     119     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     A     120     A     120     24   25   50    15   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     V     121     V     121     24   25   50    12   22   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     N     122     N     122     24   25   50    12   21   23   24   24   25   27   27   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     K     123     K     123      3   25   50     3    3    3    4    5   11   17   26   31   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     N     124     N     124      3    5   50     0    3    3    4    5    5    7   11   24   36   39   45   47   50   53   54   55   55   55   56 
LCS_GDT     R     125     R     125      0    4   50     0    0    4    6    6   11   16   22   27   36   39   45   47   50   53   54   55   55   55   56 
LCS_AVERAGE  LCS_A:  20.61  (  14.04   16.95   30.83 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     23     24     24     24     25     27     27     31     36     39     45     47     50     53     54     55     55     55     56 
GDT PERCENT_CA  17.60  18.40  19.20  19.20  19.20  20.00  21.60  21.60  24.80  28.80  31.20  36.00  37.60  40.00  42.40  43.20  44.00  44.00  44.00  44.80
GDT RMS_LOCAL    0.29   0.34   0.70   0.70   0.70   1.45   1.99   1.99   2.90   3.69   3.88   4.32   4.48   4.78   4.98   5.07   5.19   5.19   5.19   5.36
GDT RMS_ALL_CA  26.63  26.63  37.65  37.65  37.65  22.63  22.34  22.34  22.28  22.02  21.95  22.07  21.99  21.80  21.76  21.76  21.73  21.73  21.73  21.67

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         59.896
LGA    D       2      D       2         58.059
LGA    E       3      E       3         57.255
LGA    L       4      L       4         53.354
LGA    E       5      E       5         49.060
LGA    L       6      L       6         49.248
LGA    R       7      R       7         47.917
LGA    I       8      I       8         42.558
LGA    R       9      R       9         40.471
LGA    K      10      K      10         42.007
LGA    A      11      A      11         38.117
LGA    E      12      E      12         33.225
LGA    K      13      K      13         34.457
LGA    L      14      L      14         34.818
LGA    V      15      V      15         28.907
LGA    Q      16      Q      16         27.049
LGA    D      17      D      17         30.949
LGA    A      18      A      18         27.973
LGA    K      19      K      19         22.787
LGA    K      20      K      20         25.968
LGA    E      21      E      21         28.461
LGA    F      22      F      22         23.029
LGA    E      23      E      23         22.574
LGA    M      24      M      24         28.324
LGA    G      25      G      25         26.885
LGA    L      26      L      26         23.007
LGA    Y      27      Y      27         19.627
LGA    E      28      E      28         22.475
LGA    R      29      R      29         23.055
LGA    C      30      C      30         18.104
LGA    C      31      C      31         16.823
LGA    S      32      S      32         20.398
LGA    T      33      T      33         20.484
LGA    A      34      A      34         16.596
LGA    Y      35      Y      35         16.960
LGA    Y      36      Y      36         21.297
LGA    A      37      A      37         20.835
LGA    M      38      M      38         17.771
LGA    F      39      F      39         20.058
LGA    H      40      H      40         24.354
LGA    A      41      A      41         23.096
LGA    A      42      A      42         20.956
LGA    K      43      K      43         25.053
LGA    A      44      A      44         28.540
LGA    M      45      M      45         26.482
LGA    L      46      L      46         25.954
LGA    L      47      L      47         31.271
LGA    G      48      G      48         33.264
LGA    Y      49      Y      49         31.318
LGA    G      50      G      50         30.676
LGA    R      51      R      51         27.668
LGA    D      52      D      52         28.453
LGA    S      53      S      53         26.630
LGA    K      54      K      54         25.567
LGA    T      55      T      55         19.575
LGA    H      56      H      56         17.298
LGA    R      57      R      57         15.918
LGA    G      58      G      58         15.889
LGA    T      59      T      59         15.293
LGA    I      60      I      60         14.328
LGA    Y      61      Y      61         13.957
LGA    L      62      L      62         14.255
LGA    I      63      I      63         13.787
LGA    W      64      W      64         13.056
LGA    E      65      E      65         13.086
LGA    C      66      C      66         13.580
LGA    R      67      R      67         12.540
LGA    E      68      E      68         12.609
LGA    E      69      E      69         11.853
LGA    L      70      L      70          9.625
LGA    G      71      G      71          8.775
LGA    L      72      L      72         10.114
LGA    S      73      S      73          9.858
LGA    D      74      D      74         12.204
LGA    D      75      D      75         15.444
LGA    D      76      D      76         11.505
LGA    C      77      C      77          6.582
LGA    S      78      S      78         11.313
LGA    K      79      K      79         11.384
LGA    L      80      L      80          5.025
LGA    S      81      S      81          6.559
LGA    R      82      R      82          9.884
LGA    A      83      A      83          6.399
LGA    F      84      F      84          3.408
LGA    D      85      D      85          8.452
LGA    L      86      L      86          7.482
LGA    R      87      R      87          2.490
LGA    E      88      E      88          7.175
LGA    E      89      E      89          8.783
LGA    S      90      S      90          6.400
LGA    D      91      D      91          2.752
LGA    Y      92      Y      92          7.691
LGA    G      93      G      93         10.339
LGA    I      94      I      94          9.955
LGA    Y      95      Y      95         10.851
LGA    K      96      K      96         10.786
LGA    E      97      E      97          6.786
LGA    V      98      V      98          5.954
LGA    S      99      S      99          3.030
LGA    K     100      K     100          2.702
LGA    D     101      D     101          1.516
LGA    L     102      L     102          2.249
LGA    A     103      A     103          2.544
LGA    I     104      I     104          2.194
LGA    K     105      K     105          1.802
LGA    I     106      I     106          1.896
LGA    L     107      L     107          2.429
LGA    K     108      K     108          2.110
LGA    D     109      D     109          1.289
LGA    A     110      A     110          2.093
LGA    E     111      E     111          2.751
LGA    I     112      I     112          2.018
LGA    F     113      F     113          1.070
LGA    V     114      V     114          1.351
LGA    Q     115      Q     115          1.974
LGA    K     116      K     116          1.856
LGA    A     117      A     117          1.044
LGA    K     118      K     118          1.243
LGA    N     119      N     119          2.457
LGA    A     120      A     120          2.378
LGA    V     121      V     121          0.823
LGA    N     122      N     122          1.213
LGA    K     123      K     123          6.112
LGA    N     124      N     124          7.939
LGA    R     125      R     125          9.874

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  125  125    4.0     27    1.99    25.600    23.337     1.293

LGA_LOCAL      RMSD =  1.988  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.081  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 17.823  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.864915 * X  +  -0.462163 * Y  +  -0.195773 * Z  +  34.746281
  Y_new =   0.177104 * X  +   0.645977 * Y  +  -0.742528 * Z  +  37.861298
  Z_new =   0.469634 * X  +   0.607551 * Y  +   0.640566 * Z  +  22.703281 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.758953   -2.382640  [ DEG:    43.4848   -136.5152 ]
  Theta =  -0.488876   -2.652716  [ DEG:   -28.0106   -151.9894 ]
  Phi   =   0.201972   -2.939620  [ DEG:    11.5722   -168.4278 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS393_3                                  
REMARK     2: T0367.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS393_3.T0367.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  125  125   4.0   27   1.99  23.337    17.82
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS393_3
PFRMAT TS
TARGET T0367
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      11.092  14.112  -4.114  1.00 25.00           C
ATOM      2  CA  ASP     2      13.636  16.878  -4.559  1.00 25.00           C
ATOM      3  CA  GLU     3      14.141  20.366  -6.057  1.00 25.00           C
ATOM      4  CA  LEU     4      12.147  21.917  -3.179  1.00 25.00           C
ATOM      5  CA  GLU     5      14.276  20.001  -0.638  1.00 25.00           C
ATOM      6  CA  LEU     6      17.472  21.225  -2.355  1.00 25.00           C
ATOM      7  CA  ARG     7      16.174  24.827  -2.257  1.00 25.00           C
ATOM      8  CA  ILE     8      15.370  24.462   1.470  1.00 25.00           C
ATOM      9  CA  ARG     9      18.890  23.097   2.120  1.00 25.00           C
ATOM     10  CA  LYS    10      20.413  26.047   0.210  1.00 25.00           C
ATOM     11  CA  ALA    11      18.306  28.498   2.266  1.00 25.00           C
ATOM     12  CA  GLU    12      19.456  26.808   5.504  1.00 25.00           C
ATOM     13  CA  LYS    13      23.104  27.055   4.368  1.00 25.00           C
ATOM     14  CA  LEU    14      22.630  30.769   3.567  1.00 25.00           C
ATOM     15  CA  VAL    15      21.087  31.343   7.025  1.00 25.00           C
ATOM     16  CA  GLN    16      24.039  29.539   8.668  1.00 25.00           C
ATOM     17  CA  ASP    17      26.498  31.703   6.682  1.00 25.00           C
ATOM     18  CA  ALA    18      24.633  34.865   7.772  1.00 25.00           C
ATOM     19  CA  LYS    19      24.763  33.715  11.422  1.00 25.00           C
ATOM     20  CA  LYS    20      28.525  33.062  11.108  1.00 25.00           C
ATOM     21  CA  GLU    21      29.029  36.550   9.609  1.00 25.00           C
ATOM     22  CA  PHE    22      27.035  38.102  12.487  1.00 25.00           C
ATOM     23  CA  GLU    23      29.164  36.185  15.030  1.00 25.00           C
ATOM     24  CA  MET    24      32.360  37.410  13.311  1.00 25.00           C
ATOM     25  CA  GLY    25      31.062  41.011  13.410  1.00 25.00           C
ATOM     26  CA  LEU    26      30.257  40.646  17.136  1.00 25.00           C
ATOM     27  CA  TYR    27      33.776  39.282  17.787  1.00 25.00           C
ATOM     28  CA  GLU    28      35.300  42.232  15.877  1.00 25.00           C
ATOM     29  CA  ARG    29      33.193  44.682  17.932  1.00 25.00           C
ATOM     30  CA  CYS    30      34.343  42.992  21.171  1.00 25.00           C
ATOM     31  CA  CYS    31      37.992  43.239  20.034  1.00 25.00           C
ATOM     32  CA  SER    32      37.517  46.953  19.234  1.00 25.00           C
ATOM     33  CA  THR    33      35.974  47.527  22.691  1.00 25.00           C
ATOM     34  CA  ALA    34      38.927  45.724  24.334  1.00 25.00           C
ATOM     35  CA  TYR    35      41.385  47.887  22.349  1.00 25.00           C
ATOM     36  CA  TYR    36      39.520  51.050  23.439  1.00 25.00           C
ATOM     37  CA  ALA    37      39.651  49.898  27.088  1.00 25.00           C
ATOM     38  CA  MET    38      43.412  49.246  26.775  1.00 25.00           C
ATOM     39  CA  PHE    39      43.916  52.735  25.276  1.00 25.00           C
ATOM     40  CA  HIS    40      41.922  54.286  28.154  1.00 25.00           C
ATOM     41  CA  ALA    41      44.051  52.369  30.695  1.00 25.00           C
ATOM     42  CA  ALA    42      47.248  53.594  28.978  1.00 25.00           C
ATOM     43  CA  LYS    43      45.949  57.196  29.077  1.00 25.00           C
ATOM     44  CA  ALA    44      45.146  56.830  32.802  1.00 25.00           C
ATOM     45  CA  MET    45      48.664  55.466  33.453  1.00 25.00           C
ATOM     46  CA  LEU    46      50.187  58.415  31.544  1.00 25.00           C
ATOM     47  CA  LEU    47      48.081  60.867  33.599  1.00 25.00           C
ATOM     48  CA  GLY    48      49.231  59.176  36.838  1.00 25.00           C
ATOM     49  CA  TYR    49      46.036  57.260  37.722  1.00 25.00           C
ATOM     50  CA  GLY    50      42.468  55.983  37.985  1.00 25.00           C
ATOM     51  CA  ARG    51      38.973  54.487  37.442  1.00 25.00           C
ATOM     52  CA  ASP    52      35.637  55.858  38.694  1.00 25.00           C
ATOM     53  CA  SER    53      32.144  55.444  37.253  1.00 25.00           C
ATOM     54  CA  LYS    54      30.165  54.446  34.219  1.00 25.00           C
ATOM     55  CA  THR    55      31.632  52.079  31.682  1.00 25.00           C
ATOM     56  CA  HIS    56      30.244  49.497  29.256  1.00 25.00           C
ATOM     57  CA  ARG    57      29.681  45.735  29.155  1.00 25.00           C
ATOM     58  CA  GLY    58      33.431  45.568  29.912  1.00 25.00           C
ATOM     59  CA  THR    59      33.131  41.830  30.694  1.00 25.00           C
ATOM     60  CA  ILE    60      31.261  41.266  27.400  1.00 25.00           C
ATOM     61  CA  TYR    61      33.986  43.170  25.498  1.00 25.00           C
ATOM     62  CA  LEU    62      36.685  41.044  27.188  1.00 25.00           C
ATOM     63  CA  ILE    63      34.798  37.849  26.239  1.00 25.00           C
ATOM     64  CA  TRP    64      34.529  39.056  22.614  1.00 25.00           C
ATOM     65  CA  GLU    65      38.285  39.802  22.558  1.00 25.00           C
ATOM     66  CA  CYS    66      39.025  36.308  23.938  1.00 25.00           C
ATOM     67  CA  ARG    67      36.788  34.746  21.250  1.00 25.00           C
ATOM     68  CA  GLU    68      38.600  36.754  18.540  1.00 25.00           C
ATOM     69  CA  GLU    69      41.984  35.589  19.904  1.00 25.00           C
ATOM     70  CA  LEU    70      43.535  38.105  17.587  1.00 25.00           C
ATOM     71  CA  GLY    71      46.698  39.179  15.680  1.00 25.00           C
ATOM     72  CA  LEU    72      48.363  42.421  16.856  1.00 25.00           C
ATOM     73  CA  SER    73      50.562  39.925  18.788  1.00 25.00           C
ATOM     74  CA  ASP    74      52.275  41.860  21.541  1.00 25.00           C
ATOM     75  CA  ASP    75      50.475  44.939  22.938  1.00 25.00           C
ATOM     76  CA  ASP    76      47.158  43.687  21.490  1.00 25.00           C
ATOM     77  CA  CYS    77      47.736  40.248  23.072  1.00 25.00           C
ATOM     78  CA  SER    78      48.480  41.900  26.448  1.00 25.00           C
ATOM     79  CA  LYS    79      45.270  43.971  26.169  1.00 25.00           C
ATOM     80  CA  LEU    80      43.267  40.806  25.368  1.00 25.00           C
ATOM     81  CA  SER    81      44.800  39.040  28.402  1.00 25.00           C
ATOM     82  CA  ARG    82      43.897  42.023  30.626  1.00 25.00           C
ATOM     83  CA  ALA    83      40.305  41.960  29.296  1.00 25.00           C
ATOM     84  CA  PHE    84      40.082  38.203  30.010  1.00 25.00           C
ATOM     85  CA  ASP    85      41.377  38.777  33.568  1.00 25.00           C
ATOM     86  CA  LEU    86      38.777  41.539  34.095  1.00 25.00           C
ATOM     87  CA  ARG    87      36.012  39.212  32.831  1.00 25.00           C
ATOM     88  CA  GLU    88      37.199  36.464  35.220  1.00 25.00           C
ATOM     89  CA  GLU    89      37.179  38.951  38.131  1.00 25.00           C
ATOM     90  CA  SER    90      34.802  41.383  39.957  1.00 25.00           C
ATOM     91  CA  ASP    91      32.644  38.229  40.273  1.00 25.00           C
ATOM     92  CA  TYR    92      29.172  37.506  39.062  1.00 25.00           C
ATOM     93  CA  GLY    93      27.584  36.827  42.499  1.00 25.00           C
ATOM     94  CA  ILE    94      24.067  37.162  41.093  1.00 25.00           C
ATOM     95  CA  TYR    95      20.448  38.330  40.995  1.00 25.00           C
ATOM     96  CA  LYS    96      18.882  36.596  38.066  1.00 25.00           C
ATOM     97  CA  GLU    97      16.918  38.160  35.232  1.00 25.00           C
ATOM     98  CA  VAL    98      18.046  38.464  31.583  1.00 25.00           C
ATOM     99  CA  SER    99      19.329  38.238  27.991  1.00 25.00           C
ATOM    100  CA  LYS   100      22.274  36.459  29.742  1.00 25.00           C
ATOM    101  CA  ASP   101      22.146  33.934  26.865  1.00 25.00           C
ATOM    102  CA  LEU   102      24.578  36.086  24.835  1.00 25.00           C
ATOM    103  CA  ALA   103      26.951  36.279  27.834  1.00 25.00           C
ATOM    104  CA  ILE   104      26.785  32.474  28.241  1.00 25.00           C
ATOM    105  CA  LYS   105      27.559  32.019  24.518  1.00 25.00           C
ATOM    106  CA  ILE   106      30.546  34.396  24.823  1.00 25.00           C
ATOM    107  CA  LEU   107      31.824  32.441  27.858  1.00 25.00           C
ATOM    108  CA  LYS   108      31.484  29.157  25.918  1.00 25.00           C
ATOM    109  CA  ASP   109      33.413  30.668  22.974  1.00 25.00           C
ATOM    110  CA  ALA   110      36.174  31.842  25.355  1.00 25.00           C
ATOM    111  CA  GLU   111      36.375  28.339  26.889  1.00 25.00           C
ATOM    112  CA  ILE   112      36.634  26.796  23.394  1.00 25.00           C
ATOM    113  CA  PHE   113      39.433  29.250  22.492  1.00 25.00           C
ATOM    114  CA  VAL   114      41.291  28.355  25.719  1.00 25.00           C
ATOM    115  CA  GLN   115      40.936  24.628  24.918  1.00 25.00           C
ATOM    116  CA  LYS   116      42.291  25.231  21.387  1.00 25.00           C
ATOM    117  CA  ALA   117      45.264  27.165  22.832  1.00 25.00           C
ATOM    118  CA  LYS   118      45.968  24.304  25.279  1.00 25.00           C
ATOM    119  CA  ASN   119      45.839  21.779  22.403  1.00 25.00           C
ATOM    120  CA  ALA   120      48.271  23.932  20.372  1.00 25.00           C
ATOM    121  CA  VAL   121      50.644  24.124  23.372  1.00 25.00           C
ATOM    122  CA  ASN   122      50.477  20.319  23.778  1.00 25.00           C
ATOM    123  CA  LYS   123      51.678  19.003  20.407  1.00 25.00           C
ATOM    124  CA  ASN   124      50.502  17.700  17.030  1.00 25.00           C
ATOM    125  CA  ARG   125      48.450  16.250  14.249  1.00 25.00           C
TER
END
