
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  125 (  125),  selected  125 , name T0367TS393_4
# Molecule2: number of CA atoms  125 ( 1016),  selected  125 , name T0367.pdb
# PARAMETERS: T0367TS393_4.T0367.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    55        71 - 125         4.88    15.35
  LCS_AVERAGE:     33.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        98 - 123         1.90    16.04
  LONGEST_CONTINUOUS_SEGMENT:    26        99 - 124         1.98    16.28
  LCS_AVERAGE:     16.34

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    35.36
  LONGEST_CONTINUOUS_SEGMENT:    24        99 - 122         0.66    16.10
  LCS_AVERAGE:     13.83

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     M       1     M       1      3   25   30     0    3    3    3    3    4    5    9   13   15   18   27   30   30   33   34   34   35   36   37 
LCS_GDT     D       2     D       2     24   25   30     7   16   22   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     E       3     E       3     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     L       4     L       4     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     E       5     E       5     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     L       6     L       6     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     R       7     R       7     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     I       8     I       8     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     R       9     R       9     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     K      10     K      10     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     A      11     A      11     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     E      12     E      12     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   39 
LCS_GDT     K      13     K      13     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   38   48   51   53   60 
LCS_GDT     L      14     L      14     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   48   51   53   60 
LCS_GDT     V      15     V      15     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   34   38   48   51   51   61 
LCS_GDT     Q      16     Q      16     24   25   30    16   24   24   25   25   25   26   26   26   28   29   30   38   44   46   56   62   65   70   73 
LCS_GDT     D      17     D      17     24   25   30    16   24   24   25   25   25   26   26   38   44   47   50   56   60   63   65   66   70   71   73 
LCS_GDT     A      18     A      18     24   25   30    16   24   24   25   25   25   26   31   38   44   47   50   56   60   63   65   66   70   71   74 
LCS_GDT     K      19     K      19     24   25   30    16   24   24   25   25   25   30   36   40   43   47   50   56   60   63   65   66   70   73   82 
LCS_GDT     K      20     K      20     24   25   31    16   24   24   29   30   32   34   36   40   43   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     E      21     E      21     24   25   31    16   24   24   25   25   25   26   26   34   39   44   50   56   60   63   65   68   76   83   87 
LCS_GDT     F      22     F      22     24   25   31    16   24   24   25   25   25   26   33   36   40   44   50   56   60   63   65   68   76   83   87 
LCS_GDT     E      23     E      23     24   25   31    16   24   24   25   25   25   26   26   26   28   29   35   45   49   55   61   68   76   83   87 
LCS_GDT     M      24     M      24     24   25   31    16   24   24   25   25   25   26   26   26   28   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     G      25     G      25     24   25   31    16   24   24   25   25   25   26   26   26   28   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     L      26     L      26     23   25   31    14   23   23   23   23   23   23   25   26   28   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     Y      27     Y      27     23   25   31    22   23   23   23   23   23   23   25   26   26   29   32   41   47   54   61   68   76   83   87 
LCS_GDT     E      28     E      28     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   39   46   49   57   65   70   79   86 
LCS_GDT     R      29     R      29     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   46   54   60   67   75   82   87 
LCS_GDT     C      30     C      30     23   25   31    22   23   23   23   23   23   23   25   26   26   28   34   41   48   54   61   68   76   83   87 
LCS_GDT     C      31     C      31     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   39   46   54   60   67   75   83   87 
LCS_GDT     S      32     S      32     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   39   46   49   55   64   70   79   86 
LCS_GDT     T      33     T      33     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     A      34     A      34     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     Y      35     Y      35     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   39   46   54   60   67   75   83   87 
LCS_GDT     Y      36     Y      36     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   47   54   60   68   75   83   87 
LCS_GDT     A      37     A      37     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     M      38     M      38     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   48   54   61   68   76   83   87 
LCS_GDT     F      39     F      39     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   47   54   60   68   75   83   87 
LCS_GDT     H      40     H      40     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   47   54   61   68   76   83   87 
LCS_GDT     A      41     A      41     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   48   54   61   68   76   83   87 
LCS_GDT     A      42     A      42     23   25   31    22   23   23   23   23   23   23   25   26   27   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     K      43     K      43     23   25   31    22   23   23   23   23   23   23   25   26   26   27   32   41   47   54   61   68   76   83   87 
LCS_GDT     A      44     A      44     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   47   54   61   68   76   83   87 
LCS_GDT     M      45     M      45     23   25   31    22   23   23   23   23   23   23   25   26   27   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     L      46     L      46     23   25   31    22   23   23   23   23   23   23   25   26   26   27   33   41   47   54   61   68   76   83   87 
LCS_GDT     L      47     L      47     23   25   31    22   23   23   23   23   23   23   25   26   26   27   32   41   47   54   61   68   76   83   87 
LCS_GDT     G      48     G      48     23   25   31    22   23   23   23   23   23   23   25   26   27   30   34   41   47   54   60   68   76   83   87 
LCS_GDT     Y      49     Y      49      3   25   31     3    3    4    5    8   14   21   25   26   27   30   35   41   48   54   61   68   76   83   87 
LCS_GDT     G      50     G      50      4    8   31     3    4    5    8    9   11   13   18   24   27   33   37   45   52   56   61   68   76   83   87 
LCS_GDT     R      51     R      51      4    8   31     3    4    5    8   11   13   14   18   24   27   33   41   45   53   57   61   68   76   83   87 
LCS_GDT     D      52     D      52      4    8   30     3    4    5    8   11   13   14   18   24   27   33   37   45   53   57   61   68   76   83   87 
LCS_GDT     S      53     S      53      4    8   30     3    4    4    6   11   12   14   18   22   26   30   37   45   53   57   61   68   76   83   87 
LCS_GDT     K      54     K      54      4    8   30     3    4    5    7   11   14   16   21   26   29   40   46   50   57   61   62   68   76   83   87 
LCS_GDT     T      55     T      55      4    8   30     3    4    8   10   12   16   19   22   32   39   44   50   56   59   62   65   68   76   83   87 
LCS_GDT     H      56     H      56      4   12   30     3    4    8   10   12   16   19   22   32   39   44   50   56   59   63   65   68   76   83   87 
LCS_GDT     R      57     R      57     11   14   30    10   11   11   11   13   14   14   24   28   40   45   50   56   60   63   65   67   74   83   87 
LCS_GDT     G      58     G      58     11   14   30    10   11   11   11   17   18   24   27   36   43   47   50   56   60   63   65   66   70   81   87 
LCS_GDT     T      59     T      59     11   14   30    10   11   11   11   13   14   15   24   29   33   45   50   56   60   63   65   66   72   83   87 
LCS_GDT     I      60     I      60     11   14   30    10   11   11   11   13   14   14   19   26   32   44   50   56   59   63   65   68   76   83   87 
LCS_GDT     Y      61     Y      61     11   14   30    10   11   11   11   13   14   14   19   28   32   44   50   56   59   63   65   67   76   83   87 
LCS_GDT     L      62     L      62     11   14   30    10   11   11   11   13   14   15   19   26   32   39   50   56   59   63   65   66   72   83   87 
LCS_GDT     I      63     I      63     11   14   30    10   11   11   11   13   14   14   18   21   27   32   37   47   57   61   65   66   76   83   87 
LCS_GDT     W      64     W      64     11   14   30    10   11   11   11   13   14   14   18   22   27   32   37   47   57   61   65   68   76   83   87 
LCS_GDT     E      65     E      65     11   14   30    10   11   11   11   13   14   14   18   22   31   35   44   52   58   61   65   68   76   83   87 
LCS_GDT     C      66     C      66     11   14   30    10   11   11   11   13   14   14   15   21   27   31   34   39   42   47   62   65   68   81   87 
LCS_GDT     R      67     R      67     11   14   30     9   11   11   11   13   14   14   18   21   27   31   34   39   45   48   55   63   72   83   87 
LCS_GDT     E      68     E      68      5   14   30     5    5    5    9   13   14   14   15   21   27   31   34   38   45   48   55   63   72   83   87 
LCS_GDT     E      69     E      69      5   14   30     5    5    5   11   13   14   14   18   21   27   31   34   38   45   48   55   63   72   83   87 
LCS_GDT     L      70     L      70      5   14   30     5    5    6    9   12   14   14   15   17   24   25   28   33   35   38   50   55   66   79   87 
LCS_GDT     G      71     G      71      5    6   55     4    4    6    6    7   11   12   16   21   27   31   34   38   45   52   57   67   76   83   87 
LCS_GDT     L      72     L      72      5    5   55     3    4    6    8   10   15   18   21   25   30   39   45   53   58   62   65   68   76   83   87 
LCS_GDT     S      73     S      73      5   17   55     4    4    6    6   10   12   16   19   30   38   44   49   56   60   63   65   68   76   83   87 
LCS_GDT     D      74     D      74     16   17   55    11   16   16   16   18   21   22   26   30   36   45   49   56   60   63   65   67   75   81   87 
LCS_GDT     D      75     D      75     16   17   55    11   16   16   16   18   21   22   25   30   36   41   49   56   60   62   65   68   76   82   87 
LCS_GDT     D      76     D      76     16   17   55    11   16   16   16   18   21   23   28   34   41   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     C      77     C      77     16   17   55    11   16   16   16   18   21   24   35   38   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     S      78     S      78     16   17   55    12   16   16   16   18   25   32   36   38   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     K      79     K      79     16   17   55    12   16   16   16   18   21   32   36   38   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     L      80     L      80     16   17   55    12   16   22   26   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     S      81     S      81     16   17   55    12   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     R      82     R      82     16   17   55    12   16   16   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     A      83     A      83     16   17   55    12   16   16   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     F      84     F      84     16   17   55    12   17   24   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     D      85     D      85     16   17   55    12   16   16   27   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     L      86     L      86     16   17   55    12   16   16   16   18   21   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     R      87     R      87     16   17   55    12   16   16   16   21   30   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     E      88     E      88     16   17   55    12   16   16   16   21   26   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     E      89     E      89     16   17   55    12   16   16   16   18   21   24   36   40   43   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     S      90     S      90      3   17   55     3    3    4    4    5    9   15   23   28   37   44   49   56   60   63   65   68   76   82   87 
LCS_GDT     D      91     D      91      4    6   55     3    4    4    5    7    9   13   17   22   28   37   42   50   56   61   64   67   75   81   87 
LCS_GDT     Y      92     Y      92      4    7   55     3    4    4   16   18   21   24   32   39   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     G      93     G      93      4    7   55     3    6    9   14   18   26   33   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     I      94     I      94      4    7   55     3    4    9   13   18   25   33   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     Y      95     Y      95      3    7   55     3    3    4   10   13   17   21   28   36   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     K      96     K      96      3    7   55     3    3    8   11   14   19   24   32   39   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     E      97     E      97      3    7   55     3    3    4    5   10   17   20   30   36   44   47   50   56   60   63   65   67   76   82   87 
LCS_GDT     V      98     V      98      3   26   55     3    3    4    8   14   26   33   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     S      99     S      99     24   26   55     3    4   25   29   30   32   34   36   40   43   47   50   55   60   63   65   68   76   83   87 
LCS_GDT     K     100     K     100     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     D     101     D     101     24   26   55    15   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     L     102     L     102     24   26   55    15   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     A     103     A     103     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     I     104     I     104     24   26   55    16   24   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     K     105     K     105     24   26   55    15   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     I     106     I     106     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     L     107     L     107     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     K     108     K     108     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     D     109     D     109     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     A     110     A     110     24   26   55    15   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   68   76   83   87 
LCS_GDT     E     111     E     111     24   26   55    15   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   66   76   83   87 
LCS_GDT     I     112     I     112     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   66   76   83   87 
LCS_GDT     F     113     F     113     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   66   76   83   87 
LCS_GDT     V     114     V     114     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   66   70   77   85 
LCS_GDT     Q     115     Q     115     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   66   70   71   82 
LCS_GDT     K     116     K     116     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   56   60   63   65   66   70   71   82 
LCS_GDT     A     117     A     117     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   55   60   63   65   66   70   71   75 
LCS_GDT     K     118     K     118     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   54   60   63   65   66   70   71   73 
LCS_GDT     N     119     N     119     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   54   60   63   65   66   70   71   73 
LCS_GDT     A     120     A     120     24   26   55    16   23   25   29   30   32   34   36   40   44   47   50   54   60   63   65   66   70   71   73 
LCS_GDT     V     121     V     121     24   26   55    12   23   25   29   30   32   34   36   40   44   47   49   53   60   63   65   66   70   71   73 
LCS_GDT     N     122     N     122     24   26   55    12   22   25   29   30   32   34   36   40   43   47   49   53   60   63   65   66   70   71   73 
LCS_GDT     K     123     K     123      4   26   55     3    4    4    4    5    6    7   12   15   31   39   41   45   52   55   61   66   69   71   72 
LCS_GDT     N     124     N     124      4   26   55     3    4    4    4    5    6    7    9   12   17   36   48   53   60   63   65   66   70   71   73 
LCS_GDT     R     125     R     125      0    5   55     0    0    4    4   14   32   34   36   40   44   47   50   54   60   63   65   66   70   71   73 
LCS_AVERAGE  LCS_A:  21.06  (  13.83   16.34   33.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     24     25     29     30     32     34     36     40     44     47     50     56     60     63     65     68     76     83     87 
GDT PERCENT_CA  17.60  19.20  20.00  23.20  24.00  25.60  27.20  28.80  32.00  35.20  37.60  40.00  44.80  48.00  50.40  52.00  54.40  60.80  66.40  69.60
GDT RMS_LOCAL    0.29   0.60   0.67   1.06   1.14   1.34   1.64   1.91   2.58   3.23   3.39   3.78   4.53   4.43   4.75   4.89   6.41   6.79   7.23   7.26
GDT RMS_ALL_CA  28.20  35.31  16.12  16.37  16.35  16.39  16.40  16.34  16.00  15.46  15.56  15.27  15.12  15.35  15.18  15.15  17.97  17.61  17.71  17.61

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         48.833
LGA    D       2      D       2         48.416
LGA    E       3      E       3         46.078
LGA    L       4      L       4         44.784
LGA    E       5      E       5         41.006
LGA    L       6      L       6         36.767
LGA    R       7      R       7         35.786
LGA    I       8      I       8         33.494
LGA    R       9      R       9         29.197
LGA    K      10      K      10         26.367
LGA    A      11      A      11         25.097
LGA    E      12      E      12         22.176
LGA    K      13      K      13         17.393
LGA    L      14      L      14         16.146
LGA    V      15      V      15         13.937
LGA    Q      16      Q      16         10.462
LGA    D      17      D      17          6.934
LGA    A      18      A      18          6.421
LGA    K      19      K      19          3.978
LGA    K      20      K      20          2.689
LGA    E      21      E      21          6.115
LGA    F      22      F      22          5.400
LGA    E      23      E      23          9.930
LGA    M      24      M      24         13.063
LGA    G      25      G      25         14.851
LGA    L      26      L      26         11.316
LGA    Y      27      Y      27         12.621
LGA    E      28      E      28         13.957
LGA    R      29      R      29         11.686
LGA    C      30      C      30         11.061
LGA    C      31      C      31         12.286
LGA    S      32      S      32         11.087
LGA    T      33      T      33         11.563
LGA    A      34      A      34         13.393
LGA    Y      35      Y      35         11.720
LGA    Y      36      Y      36         11.557
LGA    A      37      A      37         15.553
LGA    M      38      M      38         15.371
LGA    F      39      F      39         12.176
LGA    H      40      H      40         15.848
LGA    A      41      A      41         19.503
LGA    A      42      A      42         16.560
LGA    K      43      K      43         15.367
LGA    A      44      A      44         21.522
LGA    M      45      M      45         22.433
LGA    L      46      L      46         17.901
LGA    L      47      L      47         21.012
LGA    G      48      G      48         26.608
LGA    Y      49      Y      49         25.374
LGA    G      50      G      50         24.332
LGA    R      51      R      51         22.006
LGA    D      52      D      52         21.746
LGA    S      53      S      53         20.798
LGA    K      54      K      54         17.267
LGA    T      55      T      55         12.728
LGA    H      56      H      56         11.713
LGA    R      57      R      57         11.792
LGA    G      58      G      58         10.922
LGA    T      59      T      59         10.525
LGA    I      60      I      60         12.123
LGA    Y      61      Y      61         12.783
LGA    L      62      L      62         11.888
LGA    I      63      I      63         13.378
LGA    W      64      W      64         15.060
LGA    E      65      E      65         14.332
LGA    C      66      C      66         14.853
LGA    R      67      R      67         17.404
LGA    E      68      E      68         21.558
LGA    E      69      E      69         20.094
LGA    L      70      L      70         18.564
LGA    G      71      G      71         17.871
LGA    L      72      L      72         12.536
LGA    S      73      S      73         12.589
LGA    D      74      D      74         11.386
LGA    D      75      D      75         10.279
LGA    D      76      D      76          8.719
LGA    C      77      C      77          7.651
LGA    S      78      S      78          6.498
LGA    K      79      K      79          5.490
LGA    L      80      L      80          3.558
LGA    S      81      S      81          3.026
LGA    R      82      R      82          2.892
LGA    A      83      A      83          2.293
LGA    F      84      F      84          0.792
LGA    D      85      D      85          1.537
LGA    L      86      L      86          3.453
LGA    R      87      R      87          3.048
LGA    E      88      E      88          3.805
LGA    E      89      E      89          5.225
LGA    S      90      S      90          6.183
LGA    D      91      D      91          9.316
LGA    Y      92      Y      92          7.405
LGA    G      93      G      93          5.641
LGA    I      94      I      94          6.570
LGA    Y      95      Y      95          8.565
LGA    K      96      K      96          7.424
LGA    E      97      E      97          8.011
LGA    V      98      V      98          4.816
LGA    S      99      S      99          2.671
LGA    K     100      K     100          1.415
LGA    D     101      D     101          1.012
LGA    L     102      L     102          0.998
LGA    A     103      A     103          1.111
LGA    I     104      I     104          1.059
LGA    K     105      K     105          1.009
LGA    I     106      I     106          1.146
LGA    L     107      L     107          0.953
LGA    K     108      K     108          1.211
LGA    D     109      D     109          1.345
LGA    A     110      A     110          1.094
LGA    E     111      E     111          1.052
LGA    I     112      I     112          1.291
LGA    F     113      F     113          1.027
LGA    V     114      V     114          0.246
LGA    Q     115      Q     115          1.024
LGA    K     116      K     116          0.882
LGA    A     117      A     117          0.419
LGA    K     118      K     118          1.164
LGA    N     119      N     119          1.188
LGA    A     120      A     120          0.411
LGA    V     121      V     121          1.853
LGA    N     122      N     122          2.568
LGA    K     123      K     123          7.507
LGA    N     124      N     124          6.664
LGA    R     125      R     125          2.970

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  125  125    4.0     36    1.91    30.800    27.109     1.791

LGA_LOCAL      RMSD =  1.910  Number of atoms =   36  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.123  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 14.777  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.470032 * X  +   0.360804 * Y  +  -0.805537 * Z  +  36.592049
  Y_new =  -0.050892 * X  +   0.900039 * Y  +   0.432827 * Z  +  35.261749
  Z_new =   0.881181 * X  +   0.244438 * Y  +  -0.404685 * Z  +  31.060013 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.598221   -0.543371  [ DEG:   148.8671    -31.1329 ]
  Theta =  -1.078355   -2.063238  [ DEG:   -61.7852   -118.2148 ]
  Phi   =  -3.033738    0.107854  [ DEG:  -173.8204      6.1796 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS393_4                                  
REMARK     2: T0367.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS393_4.T0367.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  125  125   4.0   36   1.91  27.109    14.78
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS393_4
PFRMAT TS
TARGET T0367
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1       5.390   8.341  35.535  1.00 25.00           C
ATOM      2  CA  ASP     2       8.178   8.150  38.157  1.00 25.00           C
ATOM      3  CA  GLU     3      10.325   7.659  35.025  1.00 25.00           C
ATOM      4  CA  LEU     4       9.387  11.165  33.802  1.00 25.00           C
ATOM      5  CA  GLU     5      10.316  12.631  37.216  1.00 25.00           C
ATOM      6  CA  LEU     6      13.682  10.808  37.110  1.00 25.00           C
ATOM      7  CA  ARG     7      14.336  12.168  33.590  1.00 25.00           C
ATOM      8  CA  ILE     8      13.494  15.711  34.776  1.00 25.00           C
ATOM      9  CA  ARG     9      15.884  15.314  37.741  1.00 25.00           C
ATOM     10  CA  LYS    10      18.646  14.102  35.383  1.00 25.00           C
ATOM     11  CA  ALA    11      18.048  17.113  33.094  1.00 25.00           C
ATOM     12  CA  GLU    12      18.243  19.472  36.104  1.00 25.00           C
ATOM     13  CA  LYS    13      21.526  17.835  37.205  1.00 25.00           C
ATOM     14  CA  LEU    14      22.941  18.238  33.669  1.00 25.00           C
ATOM     15  CA  VAL    15      21.918  21.927  33.653  1.00 25.00           C
ATOM     16  CA  GLN    16      23.609  22.436  37.052  1.00 25.00           C
ATOM     17  CA  ASP    17      26.796  20.762  35.744  1.00 25.00           C
ATOM     18  CA  ALA    18      26.749  23.028  32.658  1.00 25.00           C
ATOM     19  CA  LYS    19      26.330  26.108  34.894  1.00 25.00           C
ATOM     20  CA  LYS    20      29.273  24.965  37.062  1.00 25.00           C
ATOM     21  CA  GLU    21      31.421  24.475  33.930  1.00 25.00           C
ATOM     22  CA  PHE    22      30.483  27.980  32.707  1.00 25.00           C
ATOM     23  CA  GLU    23      31.412  29.447  36.120  1.00 25.00           C
ATOM     24  CA  MET    24      34.779  27.624  36.015  1.00 25.00           C
ATOM     25  CA  GLY    25      35.432  28.984  32.495  1.00 25.00           C
ATOM     26  CA  LEU    26      34.588  32.527  33.680  1.00 25.00           C
ATOM     27  CA  TYR    27      36.979  32.130  36.645  1.00 25.00           C
ATOM     28  CA  GLU    28      39.743  30.918  34.287  1.00 25.00           C
ATOM     29  CA  ARG    29      39.144  33.929  31.998  1.00 25.00           C
ATOM     30  CA  CYS    30      39.339  36.288  35.009  1.00 25.00           C
ATOM     31  CA  CYS    31      42.622  34.650  36.109  1.00 25.00           C
ATOM     32  CA  SER    32      44.037  35.053  32.574  1.00 25.00           C
ATOM     33  CA  THR    33      43.014  38.744  32.558  1.00 25.00           C
ATOM     34  CA  ALA    34      44.705  39.251  35.956  1.00 25.00           C
ATOM     35  CA  TYR    35      47.891  37.577  34.648  1.00 25.00           C
ATOM     36  CA  TYR    36      47.844  39.843  31.562  1.00 25.00           C
ATOM     37  CA  ALA    37      47.426  42.923  33.798  1.00 25.00           C
ATOM     38  CA  MET    38      50.369  41.780  35.966  1.00 25.00           C
ATOM     39  CA  PHE    39      52.517  41.290  32.834  1.00 25.00           C
ATOM     40  CA  HIS    40      51.579  44.797  31.611  1.00 25.00           C
ATOM     41  CA  ALA    41      52.507  46.262  35.026  1.00 25.00           C
ATOM     42  CA  ALA    42      55.875  44.440  34.919  1.00 25.00           C
ATOM     43  CA  LYS    43      56.527  45.800  31.399  1.00 25.00           C
ATOM     44  CA  ALA    44      55.684  49.343  32.585  1.00 25.00           C
ATOM     45  CA  MET    45      58.076  48.944  35.550  1.00 25.00           C
ATOM     46  CA  LEU    46      60.838  47.733  33.192  1.00 25.00           C
ATOM     47  CA  LEU    47      60.240  50.745  30.902  1.00 25.00           C
ATOM     48  CA  GLY    48      60.435  53.103  33.913  1.00 25.00           C
ATOM     49  CA  TYR    49      56.897  53.912  35.014  1.00 25.00           C
ATOM     50  CA  GLY    50      53.690  53.958  37.155  1.00 25.00           C
ATOM     51  CA  ARG    51      50.057  53.657  38.341  1.00 25.00           C
ATOM     52  CA  ASP    52      47.114  54.469  40.548  1.00 25.00           C
ATOM     53  CA  SER    53      43.868  55.111  42.447  1.00 25.00           C
ATOM     54  CA  LYS    54      41.661  52.294  43.716  1.00 25.00           C
ATOM     55  CA  THR    55      40.132  49.527  41.562  1.00 25.00           C
ATOM     56  CA  HIS    56      37.591  47.347  39.890  1.00 25.00           C
ATOM     57  CA  ARG    57      38.947  43.916  40.581  1.00 25.00           C
ATOM     58  CA  GLY    58      42.136  42.838  38.754  1.00 25.00           C
ATOM     59  CA  THR    59      40.036  41.153  36.031  1.00 25.00           C
ATOM     60  CA  ILE    60      37.938  44.334  35.646  1.00 25.00           C
ATOM     61  CA  TYR    61      41.128  46.431  35.347  1.00 25.00           C
ATOM     62  CA  LEU    62      42.479  44.039  32.678  1.00 25.00           C
ATOM     63  CA  ILE    63      39.181  44.289  30.748  1.00 25.00           C
ATOM     64  CA  TRP    64      39.336  48.112  30.930  1.00 25.00           C
ATOM     65  CA  GLU    65      42.942  48.051  29.641  1.00 25.00           C
ATOM     66  CA  CYS    66      41.896  45.768  26.751  1.00 25.00           C
ATOM     67  CA  ARG    67      39.014  48.139  25.887  1.00 25.00           C
ATOM     68  CA  GLU    68      41.423  51.117  25.921  1.00 25.00           C
ATOM     69  CA  GLU    69      43.828  49.229  23.616  1.00 25.00           C
ATOM     70  CA  LEU    70      41.706  47.711  20.871  1.00 25.00           C
ATOM     71  CA  GLY    71      44.767  47.895  18.624  1.00 25.00           C
ATOM     72  CA  LEU    72      45.879  44.882  20.681  1.00 25.00           C
ATOM     73  CA  SER    73      49.561  44.001  20.656  1.00 25.00           C
ATOM     74  CA  ASP    74      50.420  41.147  23.017  1.00 25.00           C
ATOM     75  CA  ASP    75      47.764  39.222  21.039  1.00 25.00           C
ATOM     76  CA  ASP    76      47.292  36.808  23.974  1.00 25.00           C
ATOM     77  CA  CYS    77      46.906  39.764  26.378  1.00 25.00           C
ATOM     78  CA  SER    78      44.307  41.346  24.052  1.00 25.00           C
ATOM     79  CA  LYS    79      42.390  38.035  23.901  1.00 25.00           C
ATOM     80  CA  LEU    80      42.450  37.796  27.723  1.00 25.00           C
ATOM     81  CA  SER    81      41.141  41.386  27.991  1.00 25.00           C
ATOM     82  CA  ARG    82      38.330  40.572  25.520  1.00 25.00           C
ATOM     83  CA  ALA    83      37.410  37.459  27.554  1.00 25.00           C
ATOM     84  CA  PHE    84      37.335  39.549  30.763  1.00 25.00           C
ATOM     85  CA  ASP    85      35.076  42.129  29.059  1.00 25.00           C
ATOM     86  CA  LEU    86      32.731  39.338  27.886  1.00 25.00           C
ATOM     87  CA  ARG    87      32.599  37.921  31.442  1.00 25.00           C
ATOM     88  CA  GLU    88      31.785  41.399  32.823  1.00 25.00           C
ATOM     89  CA  GLU    89      28.994  41.802  30.232  1.00 25.00           C
ATOM     90  CA  SER    90      28.005  44.787  32.310  1.00 25.00           C
ATOM     91  CA  ASP    91      26.624  47.033  35.029  1.00 25.00           C
ATOM     92  CA  TYR    92      25.560  43.794  36.652  1.00 25.00           C
ATOM     93  CA  GLY    93      23.699  45.635  39.461  1.00 25.00           C
ATOM     94  CA  ILE    94      20.247  44.070  38.736  1.00 25.00           C
ATOM     95  CA  TYR    95      17.232  42.335  37.102  1.00 25.00           C
ATOM     96  CA  LYS    96      16.546  43.259  33.446  1.00 25.00           C
ATOM     97  CA  GLU    97      15.598  40.643  30.884  1.00 25.00           C
ATOM     98  CA  VAL    98      19.367  40.122  30.702  1.00 25.00           C
ATOM     99  CA  SER    99      21.276  37.513  32.754  1.00 25.00           C
ATOM    100  CA  LYS   100      22.011  34.902  30.093  1.00 25.00           C
ATOM    101  CA  ASP   101      22.908  35.367  26.399  1.00 25.00           C
ATOM    102  CA  LEU   102      25.972  37.444  27.378  1.00 25.00           C
ATOM    103  CA  ALA   103      27.056  34.726  29.849  1.00 25.00           C
ATOM    104  CA  ILE   104      26.659  32.060  27.128  1.00 25.00           C
ATOM    105  CA  LYS   105      28.757  34.172  24.718  1.00 25.00           C
ATOM    106  CA  ILE   106      31.469  34.572  27.392  1.00 25.00           C
ATOM    107  CA  LEU   107      31.474  30.789  27.989  1.00 25.00           C
ATOM    108  CA  LYS   108      31.804  30.170  24.224  1.00 25.00           C
ATOM    109  CA  ASP   109      34.730  32.636  24.050  1.00 25.00           C
ATOM    110  CA  ALA   110      36.428  30.866  26.992  1.00 25.00           C
ATOM    111  CA  GLU   111      35.957  27.483  25.260  1.00 25.00           C
ATOM    112  CA  ILE   112      37.467  28.896  22.036  1.00 25.00           C
ATOM    113  CA  PHE   113      40.457  30.255  24.004  1.00 25.00           C
ATOM    114  CA  VAL   114      40.953  26.838  25.661  1.00 25.00           C
ATOM    115  CA  GLN   115      40.835  25.133  22.233  1.00 25.00           C
ATOM    116  CA  LYS   116      43.425  27.610  20.883  1.00 25.00           C
ATOM    117  CA  ALA   117      45.688  26.923  23.896  1.00 25.00           C
ATOM    118  CA  LYS   118      45.356  23.152  23.315  1.00 25.00           C
ATOM    119  CA  ASN   119      46.252  23.616  19.621  1.00 25.00           C
ATOM    120  CA  ALA   120      49.317  25.694  20.600  1.00 25.00           C
ATOM    121  CA  VAL   121      50.401  22.975  23.070  1.00 25.00           C
ATOM    122  CA  ASN   122      50.004  20.310  20.350  1.00 25.00           C
ATOM    123  CA  LYS   123      52.890  17.830  19.828  1.00 25.00           C
ATOM    124  CA  ASN   124      51.411  15.500  22.467  1.00 25.00           C
ATOM    125  CA  ARG   125      48.911  12.924  23.759  1.00 25.00           C
TER
END
