
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS168_2
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS168_2.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        64 - 99          5.00    23.70
  LCS_AVERAGE:     21.77

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29       111 - 139         1.57    22.69
  LCS_AVERAGE:     11.85

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       111 - 138         0.98    22.61
  LCS_AVERAGE:      9.13

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3   13   31     0    3    3    9   13   14   18   22   26   30   33   37   39   42   48   51   56   60   63   65 
LCS_GDT     T       2     T       2     10   13   33     1    3    4   10   13   14   18   22   26   30   33   37   39   42   48   51   56   60   63   65 
LCS_GDT     D       3     D       3     10   13   33     9    9    9   10   13   14   16   20   23   24   31   35   39   42   47   51   54   58   62   65 
LCS_GDT     W       4     W       4     10   13   33     9    9    9   10   13   14   15   20   23   23   27   33   39   42   47   51   54   60   63   65 
LCS_GDT     Q       5     Q       5     10   13   33     9    9    9   10   13   14   16   18   26   30   33   37   39   42   48   51   56   60   63   66 
LCS_GDT     Q       6     Q       6     10   13   33     9    9    9   10   13   14   18   22   26   30   33   37   40   44   48   51   58   60   63   66 
LCS_GDT     A       7     A       7     10   13   33     9    9    9   10   13   14   18   22   26   30   33   37   40   43   48   51   58   60   63   66 
LCS_GDT     L       8     L       8     10   13   33     9    9    9   10   13   14   18   22   26   30   33   37   40   44   48   51   58   60   63   66 
LCS_GDT     D       9     D       9     10   13   33     9    9    9   10   13   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     R      10     R      10     10   13   33     9    9    9   10   13   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     H      11     H      11     10   13   33     9    9    9   10   13   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     V      12     V      12      3   13   33     3    3    3    4   10   13   15   19   23   26   31   37   41   44   48   51   58   60   63   67 
LCS_GDT     G      13     G      13      3   13   33     3    3    9   10   10   11   12   15   18   19   27   35   41   44   47   51   58   60   63   67 
LCS_GDT     V      14     V      14      3   14   33     3    3    7   10   13   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     G      15     G      15     12   14   33     3    4   12   12   12   13   14   15   19   26   30   37   40   44   48   51   58   60   63   67 
LCS_GDT     V      16     V      16     12   14   33     6   11   12   12   13   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     R      17     R      17     12   14   33    10   11   12   12   12   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     T      18     T      18     12   14   33    10   11   12   12   12   13   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     T      19     T      19     12   14   33    10   11   12   12   12   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     R      20     R      20     12   14   33    10   11   12   12   12   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     D      21     D      21     12   14   33    10   11   12   12   12   13   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     L      22     L      22     12   14   33    10   11   12   12   12   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     I      23     I      23     12   14   33    10   11   12   12   12   14   19   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     R      24     R      24     12   14   33    10   11   12   12   12   13   15   20   25   27   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     L      25     L      25     12   14   33    10   11   12   12   12   13   15   20   25   27   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     I      26     I      26     12   14   33    10   11   12   12   12   13   16   22   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     Q      27     Q      27      6   14   33     4    5    7    8   12   13   19   22   26   30   33   37   40   43   48   51   58   60   63   67 
LCS_GDT     P      28     P      28      6   11   33     4    5    7    8   11   12   12   15   19   25   29   37   40   42   48   51   58   60   63   67 
LCS_GDT     E      29     E      29      6   11   33     4    5    7    8   11   12   13   17   21   23   28   37   40   42   48   51   58   60   63   67 
LCS_GDT     D      30     D      30      6   11   33     4    5    7    8   11   13   15   19   23   26   31   37   41   44   48   51   58   60   63   67 
LCS_GDT     W      31     W      31      6   11   33     3    4    7    8   11   13   15   19   23   26   31   37   41   44   48   51   58   60   62   67 
LCS_GDT     D      32     D      32      6   11   33     3    5    7    8   11   12   13   17   21   23   27   33   37   42   46   51   56   59   62   67 
LCS_GDT     K      33     K      33      5   11   33     3    5    7    8   10   12   13   17   21   24   28   33   39   43   46   51   56   59   62   67 
LCS_GDT     R      34     R      34      4   11   33     3    5    5    5   11   12   12   18   22   26   28   33   39   43   46   51   56   59   62   67 
LCS_GDT     P      35     P      35      4   11   30     3    5    7    8   11   18   22   23   25   26   28   32   37   42   45   49   54   59   62   67 
LCS_GDT     I      36     I      36      3   11   29     3    3    7    8   12   16   18   19   25   26   27   28   33   37   42   46   51   53   58   64 
LCS_GDT     S      37     S      37      3    6   29     3    3    5    6    8   11   14   16   18   23   28   33   37   42   45   49   54   59   62   67 
LCS_GDT     G      38     G      38      4    6   29     3    4    5    7    8   11   14   17   21   24   28   33   39   43   46   51   56   59   62   67 
LCS_GDT     K      39     K      39      4    6   29     3    4    4    8    8   12   15   19   21   25   29   37   41   43   47   51   58   59   62   67 
LCS_GDT     R      40     R      40      4   14   29     3    4    4    6    8    9   13   20   23   27   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     S      41     S      41     13   18   29    10   12   12   15   16   19   22   23   25   27   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     V      42     V      42     13   18   29    10   12   12   15   16   19   22   23   25   27   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     Y      43     Y      43     13   18   29    10   12   12   15   16   19   22   23   25   26   33   37   40   44   48   51   58   60   63   66 
LCS_GDT     E      44     E      44     13   18   29    10   12   12   15   16   19   22   23   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     V      45     V      45     13   18   29    10   12   12   15   17   19   22   23   25   27   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     A      46     A      46     13   18   29    10   12   12   15   17   19   22   23   25   27   33   37   41   44   50   53   58   63   65   67 
LCS_GDT     V      47     V      47     13   18   29    10   12   12   15   17   19   22   23   26   30   39   44   50   56   58   60   62   63   65   67 
LCS_GDT     H      48     H      48     13   18   29    10   12   12   15   17   19   22   23   31   37   44   49   52   56   58   60   62   63   65   67 
LCS_GDT     L      49     L      49     13   18   29    10   12   12   15   17   21   25   30   30   30   38   45   47   54   56   60   62   63   65   67 
LCS_GDT     A      50     A      50     13   18   29    10   12   14   28   28   29   32   34   38   41   44   49   52   56   58   60   62   63   66   67 
LCS_GDT     V      51     V      51     13   18   29     9   12   12   15   17   19   22   29   38   41   44   49   52   56   58   60   62   63   66   67 
LCS_GDT     L      52     L      52     13   18   28     8   12   12   15   17   19   29   30   33   34   43   46   52   55   58   60   62   63   66   67 
LCS_GDT     L      53     L      53     13   18   28     4   10   11   15   17   19   22   23   26   30   33   37   41   44   48   51   59   63   66   67 
LCS_GDT     E      54     E      54     10   18   28     8   10   11   15   17   19   22   23   25   27   33   37   41   44   48   51   58   63   66   67 
LCS_GDT     A      55     A      55     10   18   28     8   10   11   15   17   19   22   23   25   26   31   37   41   44   50   55   59   63   66   67 
LCS_GDT     D      56     D      56     10   18   28     8   10   11   13   17   19   22   23   25   30   33   37   41   44   48   51   59   63   66   67 
LCS_GDT     L      57     L      57     10   18   28     8   10   11   12   17   19   22   23   26   30   33   37   41   44   48   51   58   60   63   67 
LCS_GDT     R      58     R      58     10   18   28     8   10   11   13   17   19   22   23   25   26   31   37   41   44   47   51   56   59   62   67 
LCS_GDT     I      59     I      59     10   18   28     8   10   11   12   17   19   22   23   25   26   27   28   31   34   39   46   49   56   59   67 
LCS_GDT     A      60     A      60     10   17   28     8   10   11   12   17   18   22   23   25   26   27   31   38   43   48   51   58   60   63   67 
LCS_GDT     T      61     T      61      4   11   28     4    4    5    7   11   13   14   17   22   26   27   29   33   42   46   51   58   60   63   67 
LCS_GDT     G      62     G      62      4    8   29     4    4    5    7   11   13   14   17   19   21   24   29   33   40   46   51   58   60   63   67 
LCS_GDT     A      63     A      63      4    8   32     4    4    5    7   11   13   14   17   19   21   27   33   37   42   46   51   58   60   63   67 
LCS_GDT     T      64     T      64      4    8   36     4    4    5    7   11   13   14   17   19   21   27   33   37   42   46   51   58   60   63   67 
LCS_GDT     A      65     A      65      8   10   36     7    7    8    9   11   12   14   20   25   27   31   38   46   48   51   54   59   63   66   67 
LCS_GDT     D      66     D      66      8   10   36     7    7    8    9   11   13   14   20   25   27   32   38   46   48   51   54   59   63   66   67 
LCS_GDT     E      67     E      67      8   10   36     7    7    8    9   11   13   14   20   25   30   34   40   46   49   51   55   59   63   66   67 
LCS_GDT     M      68     M      68      8   10   36     7    7    8    9   11   13   15   20   26   30   34   40   46   49   51   55   59   63   66   67 
LCS_GDT     A      69     A      69      8   10   36     7    7    8    9   11   13   15   20   26   27   33   40   46   49   51   55   59   63   66   67 
LCS_GDT     Q      70     Q      70      8   10   36     7    7    8    9   11   14   19   22   26   30   34   40   46   49   51   55   59   63   66   67 
LCS_GDT     F      71     F      71      8   10   36     7    7    8    9   11   14   19   22   26   30   34   40   46   49   51   55   59   63   66   67 
LCS_GDT     Y      72     Y      72      8   10   36     3    4    8    8   11   12   15   22   28   32   36   40   46   49   52   55   59   63   66   67 
LCS_GDT     A      73     A      73      4   10   36     3    4    6    8   11   12   13   19   25   30   34   40   46   49   51   55   58   63   66   66 
LCS_GDT     V      74     V      74      4   10   36     3    4    6    8   11   12   13   20   25   30   34   40   46   49   51   55   58   63   66   66 
LCS_GDT     P      75     P      75      3   11   36     3    3    4    6    7   11   16   27   30   34   39   41   46   49   52   56   59   63   66   66 
LCS_GDT     V      76     V      76      6   24   36     3    3    6    6   10   11   15   24   32   37   41   47   52   54   58   60   62   63   66   66 
LCS_GDT     L      77     L      77      6   24   36     3   12   19   23   25   27   29   33   36   39   44   48   52   56   58   60   62   63   66   66 
LCS_GDT     P      78     P      78     21   24   36     4    6   17   23   25   27   29   33   36   39   43   48   52   56   58   60   62   63   66   66 
LCS_GDT     E      79     E      79     21   24   36     4    5    8   17   22   25   28   32   35   37   40   43   47   53   57   60   62   63   66   66 
LCS_GDT     Q      80     Q      80     21   24   36    18   19   19   23   25   27   29   33   37   39   44   48   52   56   58   60   62   63   66   66 
LCS_GDT     L      81     L      81     21   24   36    18   19   19   23   25   27   29   33   37   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     V      82     V      82     21   24   36    18   19   19   23   25   27   29   33   37   39   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     D      83     D      83     21   24   36    18   19   19   23   25   27   29   33   37   39   44   48   52   56   58   60   62   63   66   66 
LCS_GDT     R      84     R      84     21   24   36    18   19   19   23   25   27   29   33   37   40   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     L      85     L      85     21   24   36    18   19   19   23   25   27   29   33   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     D      86     D      86     21   24   36    18   19   19   23   25   27   29   33   37   39   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     Q      87     Q      87     21   24   36    18   19   19   23   25   27   29   33   37   40   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     S      88     S      88     21   24   36    18   19   19   23   25   27   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     W      89     W      89     21   24   36    18   19   19   23   25   27   29   33   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     Q      90     Q      90     21   24   36    18   19   19   23   25   27   29   33   37   40   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     Y      91     Y      91     21   24   36    18   19   19   23   25   27   29   33   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     Y      92     Y      92     21   24   36    18   19   19   23   26   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     Q      93     Q      93     21   24   36    18   19   19   23   25   27   29   33   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     D      94     D      94     21   24   36    18   19   19   23   25   27   29   33   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     R      95     R      95     21   24   36    18   19   19   23   25   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     L      96     L      96     21   24   36    18   19   19   23   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     M      97     M      97     21   24   36     3   19   19   23   25   30   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     A      98     A      98     21   24   36    18   19   19   23   25   30   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     D      99     D      99     21   24   36     3    4   15   23   25   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     F     100     F     100      3   22   35     3    3    4   12   15   18   22   31   37   40   44   49   52   56   58   60   62   63   65   66 
LCS_GDT     S     101     S     101      3    5   31     3    3    4    8   10   15   18   23   29   34   40   45   51   54   57   60   62   63   65   66 
LCS_GDT     T     102     T     102      3    6   29     3    3    4    5    6    7    9   12   15   20   25   27   33   37   45   51   58   63   65   66 
LCS_GDT     E     103     E     103      3    6   29     3    3    4    5    6    8   10   12   15   20   25   25   32   35   38   41   47   53   57   63 
LCS_GDT     T     104     T     104      3    6   29     2    3    4    5    6    6    9   11   12   17   22   26   32   35   38   40   44   48   52   59 
LCS_GDT     T     105     T     105      3    6   20     0    3    4    5    6    7    8   10   13   16   20   22   25   28   34   37   40   45   49   56 
LCS_GDT     Y     106     Y     106      4    7   20     3    4    5    8    8    8   10   12   14   17   20   22   25   29   33   37   41   45   51   56 
LCS_GDT     W     107     W     107      4    7   20     3    5    5    8    8    8   10   11   14   16   20   22   25   28   31   34   38   45   47   49 
LCS_GDT     G     108     G     108      4    7   33     3    4    5    8    8    8   10   12   14   17   20   23   27   31   34   39   43   48   54   59 
LCS_GDT     V     109     V     109      4    7   33     3    4    4    6    7    9   11   12   14   17   20   27   30   34   41   50   55   59   63   66 
LCS_GDT     T     110     T     110      4    7   33     3    4    5    8    8   11   14   20   24   29   32   37   42   47   53   58   60   63   65   66 
LCS_GDT     D     111     D     111     28   29   33     3    3    5   10   25   28   29   30   31   40   44   49   52   55   58   60   62   63   65   66 
LCS_GDT     S     112     S     112     28   29   33    18   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   65   66 
LCS_GDT     T     113     T     113     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     T     114     T     114     28   29   33    20   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     G     115     G     115     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   65   66 
LCS_GDT     W     116     W     116     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     L     117     L     117     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     L     118     L     118     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     E     119     E     119     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     A     120     A     120     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   67 
LCS_GDT     A     121     A     121     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     V     122     V     122     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   67 
LCS_GDT     H     123     H     123     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   67 
LCS_GDT     L     124     L     124     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   67 
LCS_GDT     Y     125     Y     125     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     H     126     H     126     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   67 
LCS_GDT     H     127     H     127     28   29   33    20   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     R     128     R     128     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     S     129     S     129     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     Q     130     Q     130     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     L     131     L     131     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     L     132     L     132     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     D     133     D     133     28   29   33    24   27   27   28   28   31   34   34   39   41   44   47   52   56   58   60   62   63   66   66 
LCS_GDT     Y     134     Y     134     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     L     135     L     135     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     N     136     N     136     28   29   33    24   27   27   28   28   31   34   34   39   41   44   47   52   56   58   60   62   63   65   66 
LCS_GDT     L     137     L     137     28   29   33    24   27   27   28   28   31   34   34   39   41   44   47   52   56   58   60   62   63   66   66 
LCS_GDT     L     138     L     138     28   29   33    24   27   27   28   28   31   34   34   39   41   44   49   52   56   58   60   62   63   66   66 
LCS_GDT     G     139     G     139      3   29   33     3    4    4    4   10   13   23   29   37   40   44   49   52   56   58   60   62   63   65   66 
LCS_GDT     Y     140     Y     140      3    7   33     3    3    6   10   15   19   26   31   37   40   44   49   52   56   58   60   62   63   65   66 
LCS_GDT     D     141     D     141      3    7   33     3    4    5    6    7    8   11   18   23   28   34   43   48   52   56   59   61   63   65   66 
LCS_GDT     I     142     I     142      3    7   33     3    3    4    5    6    8   11   12   13   13   14   16   22   23   26   31   34   52   60   61 
LCS_GDT     K     143     K     143      3    7   17     3    3    5    6    7    8   11   12   13   15   17   20   26   29   35   40   45   50   53   55 
LCS_GDT     L     144     L     144      3    7   17     3    3    5    5    7    8   11   12   13   15   17   20   22   27   31   34   36   37   43   49 
LCS_GDT     D     145     D     145      3    7   17     3    3    5    6    7    8   11   12   13   14   17   20   22   25   26   30   31   34   38   39 
LCS_GDT     L     146     L     146      3    7   17     3    3    5    6    7    8   11   12   13   13   14   20   22   25   26   28   29   34   35   37 
LCS_GDT     F     147     F     147      0    7   17     0    0    4    5    7    8   11   12   13   14   17   20   22   25   26   28   31   34   35   38 
LCS_AVERAGE  LCS_A:  14.25  (   9.13   11.85   21.77 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     27     27     28     28     31     34     34     39     41     44     49     52     56     58     60     62     63     66     67 
GDT PERCENT_CA  16.33  18.37  18.37  19.05  19.05  21.09  23.13  23.13  26.53  27.89  29.93  33.33  35.37  38.10  39.46  40.82  42.18  42.86  44.90  45.58
GDT RMS_LOCAL    0.33   0.39   0.39   0.61   0.61   1.82   2.18   2.18   2.73   2.98   3.26   3.89   4.06   4.32   4.46   4.63   4.83   4.98   6.28   6.80
GDT RMS_ALL_CA  22.52  22.49  22.49  22.39  22.39  21.90  21.77  21.77  21.67  21.73  21.71  21.41  21.52  21.47  21.48  21.50  21.49  21.36  22.78  23.52

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         50.980
LGA    T       2      T       2         50.739
LGA    D       3      D       3         46.763
LGA    W       4      W       4         39.927
LGA    Q       5      Q       5         39.292
LGA    Q       6      Q       6         42.205
LGA    A       7      A       7         36.945
LGA    L       8      L       8         31.575
LGA    D       9      D       9         35.089
LGA    R      10      R      10         36.306
LGA    H      11      H      11         29.417
LGA    V      12      V      12         26.605
LGA    G      13      G      13         32.490
LGA    V      14      V      14         32.092
LGA    G      15      G      15         30.092
LGA    V      16      V      16         26.464
LGA    R      17      R      17         31.373
LGA    T      18      T      18         31.858
LGA    T      19      T      19         25.414
LGA    R      20      R      20         25.045
LGA    D      21      D      21         30.149
LGA    L      22      L      22         28.472
LGA    I      23      I      23         22.741
LGA    R      24      R      24         25.521
LGA    L      25      L      25         30.338
LGA    I      26      I      26         27.290
LGA    Q      27      Q      27         33.487
LGA    P      28      P      28         35.667
LGA    E      29      E      29         39.108
LGA    D      30      D      30         34.153
LGA    W      31      W      31         28.851
LGA    D      32      D      32         32.792
LGA    K      33      K      33         35.817
LGA    R      34      R      34         35.728
LGA    P      35      P      35         39.164
LGA    I      36      I      36         37.465
LGA    S      37      S      37         39.909
LGA    G      38      G      38         37.385
LGA    K      39      K      39         30.860
LGA    R      40      R      40         26.360
LGA    S      41      S      41         25.443
LGA    V      42      V      42         21.110
LGA    Y      43      Y      43         16.904
LGA    E      44      E      44         16.697
LGA    V      45      V      45         14.527
LGA    A      46      A      46          9.220
LGA    V      47      V      47          7.276
LGA    H      48      H      48          5.856
LGA    L      49      L      49          6.074
LGA    A      50      A      50          3.271
LGA    V      51      V      51          5.349
LGA    L      52      L      52          5.834
LGA    L      53      L      53         12.275
LGA    E      54      E      54         14.068
LGA    A      55      A      55         11.579
LGA    D      56      D      56         14.407
LGA    L      57      L      57         20.554
LGA    R      58      R      58         20.906
LGA    I      59      I      59         18.659
LGA    A      60      A      60         24.530
LGA    T      61      T      61         27.151
LGA    G      62      G      62         27.599
LGA    A      63      A      63         23.390
LGA    T      64      T      64         25.576
LGA    A      65      A      65         20.854
LGA    D      66      D      66         21.874
LGA    E      67      E      67         19.308
LGA    M      68      M      68         17.648
LGA    A      69      A      69         19.863
LGA    Q      70      Q      70         20.099
LGA    F      71      F      71         17.219
LGA    Y      72      Y      72         14.953
LGA    A      73      A      73         18.341
LGA    V      74      V      74         19.016
LGA    P      75      P      75         15.927
LGA    V      76      V      76         12.482
LGA    L      77      L      77         12.109
LGA    P      78      P      78         10.781
LGA    E      79      E      79         14.209
LGA    Q      80      Q      80         12.163
LGA    L      81      L      81          6.988
LGA    V      82      V      82          9.040
LGA    D      83      D      83         11.653
LGA    R      84      R      84          8.363
LGA    L      85      L      85          5.231
LGA    D      86      D      86          9.190
LGA    Q      87      Q      87          9.486
LGA    S      88      S      88          5.007
LGA    W      89      W      89          5.187
LGA    Q      90      Q      90          8.325
LGA    Y      91      Y      91          6.497
LGA    Y      92      Y      92          2.015
LGA    Q      93      Q      93          5.280
LGA    D      94      D      94          6.156
LGA    R      95      R      95          3.173
LGA    L      96      L      96          1.819
LGA    M      97      M      97          3.700
LGA    A      98      A      98          3.492
LGA    D      99      D      99          2.979
LGA    F     100      F     100          6.617
LGA    S     101      S     101         11.195
LGA    T     102      T     102         17.266
LGA    E     103      E     103         21.324
LGA    T     104      T     104         22.793
LGA    T     105      T     105         23.422
LGA    Y     106      Y     106         23.542
LGA    W     107      W     107         24.772
LGA    G     108      G     108         20.679
LGA    V     109      V     109         17.045
LGA    T     110      T     110         12.446
LGA    D     111      D     111          5.829
LGA    S     112      S     112          1.218
LGA    T     113      T     113          2.602
LGA    T     114      T     114          3.563
LGA    G     115      G     115          1.975
LGA    W     116      W     116          1.096
LGA    L     117      L     117          2.947
LGA    L     118      L     118          2.665
LGA    E     119      E     119          0.762
LGA    A     120      A     120          1.645
LGA    A     121      A     121          2.974
LGA    V     122      V     122          2.325
LGA    H     123      H     123          0.295
LGA    L     124      L     124          2.005
LGA    Y     125      Y     125          3.022
LGA    H     126      H     126          2.233
LGA    H     127      H     127          0.730
LGA    R     128      R     128          1.997
LGA    S     129      S     129          2.826
LGA    Q     130      Q     130          1.850
LGA    L     131      L     131          0.575
LGA    L     132      L     132          2.299
LGA    D     133      D     133          2.789
LGA    Y     134      Y     134          1.462
LGA    L     135      L     135          1.053
LGA    N     136      N     136          2.526
LGA    L     137      L     137          2.586
LGA    L     138      L     138          0.829
LGA    G     139      G     139          6.309
LGA    Y     140      Y     140          9.635
LGA    D     141      D     141         13.922
LGA    I     142      I     142         20.640
LGA    K     143      K     143         25.395
LGA    L     144      L     144         27.629
LGA    D     145      D     145         33.996
LGA    L     146      L     146         31.889
LGA    F     147      F     147         35.199

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     34    2.18    25.340    21.854     1.493

LGA_LOCAL      RMSD =  2.177  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.819  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 18.036  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.406550 * X  +  -0.228188 * Y  +   0.884674 * Z  +   5.049226
  Y_new =   0.512280 * X  +   0.858705 * Y  +  -0.013928 * Z  +  -0.336498
  Z_new =  -0.756496 * X  +   0.458863 * Y  +   0.466003 * Z  + -12.072740 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.777678   -2.363914  [ DEG:    44.5577   -135.4423 ]
  Theta =   0.857938    2.283654  [ DEG:    49.1562    130.8438 ]
  Phi   =   0.899964   -2.241628  [ DEG:    51.5642   -128.4359 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS168_2                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS168_2.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   34   2.18  21.854    18.04
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS168_2
PFRMAT TS
TARGET T0369
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1     -17.012  -7.906 -26.363  1.00 25.00           C
ATOM      2  CA  THR     2     -19.725  -6.715 -23.923  1.00 25.00           C
ATOM      3  CA  ASP     3     -17.545  -5.738 -21.008  1.00 25.00           C
ATOM      4  CA  TRP     4     -13.888  -5.795 -19.871  1.00 25.00           C
ATOM      5  CA  GLN     5     -12.907  -3.570 -22.830  1.00 25.00           C
ATOM      6  CA  GLN     6     -15.719  -1.121 -21.951  1.00 25.00           C
ATOM      7  CA  ALA     7     -14.536  -1.032 -18.309  1.00 25.00           C
ATOM      8  CA  LEU     8     -10.950  -0.347 -19.464  1.00 25.00           C
ATOM      9  CA  ASP     9     -12.190   2.490 -21.717  1.00 25.00           C
ATOM     10  CA  ARG    10     -14.159   3.984 -18.790  1.00 25.00           C
ATOM     11  CA  HIS    11     -11.048   3.792 -16.566  1.00 25.00           C
ATOM     12  CA  VAL    12     -11.114   7.318 -15.172  1.00 25.00           C
ATOM     13  CA  GLY    13     -11.763   9.487 -18.295  1.00 25.00           C
ATOM     14  CA  VAL    14      -8.510   9.071 -20.279  1.00 25.00           C
ATOM     15  CA  GLY    15      -6.815   8.857 -23.638  1.00 25.00           C
ATOM     16  CA  VAL    16      -4.558   6.363 -21.840  1.00 25.00           C
ATOM     17  CA  ARG    17      -2.766   6.058 -25.173  1.00 25.00           C
ATOM     18  CA  THR    18      -0.234   8.931 -25.135  1.00 25.00           C
ATOM     19  CA  THR    19       0.457   8.304 -21.421  1.00 25.00           C
ATOM     20  CA  ARG    20       0.979   4.576 -22.121  1.00 25.00           C
ATOM     21  CA  ASP    21       3.400   5.424 -24.965  1.00 25.00           C
ATOM     22  CA  LEU    22       5.331   7.785 -22.649  1.00 25.00           C
ATOM     23  CA  ILE    23       5.534   5.043 -19.982  1.00 25.00           C
ATOM     24  CA  ARG    24       6.827   2.561 -22.596  1.00 25.00           C
ATOM     25  CA  LEU    25       9.469   5.092 -23.727  1.00 25.00           C
ATOM     26  CA  ILE    26      10.553   5.621 -20.092  1.00 25.00           C
ATOM     27  CA  GLN    27      12.429   8.610 -21.569  1.00 25.00           C
ATOM     28  CA  PRO    28      12.528   9.915 -25.075  1.00 25.00           C
ATOM     29  CA  GLU    29      15.908   9.478 -26.820  1.00 25.00           C
ATOM     30  CA  ASP    30      16.172   5.905 -25.466  1.00 25.00           C
ATOM     31  CA  TRP    31      16.016   2.486 -27.006  1.00 25.00           C
ATOM     32  CA  ASP    32      17.921   2.757 -30.268  1.00 25.00           C
ATOM     33  CA  LYS    33      20.897   1.266 -28.431  1.00 25.00           C
ATOM     34  CA  ARG    34      21.690   2.158 -24.809  1.00 25.00           C
ATOM     35  CA  PRO    35      24.833   1.397 -22.837  1.00 25.00           C
ATOM     36  CA  ILE    36      23.709  -2.117 -21.911  1.00 25.00           C
ATOM     37  CA  SER    37      26.257  -3.501 -19.503  1.00 25.00           C
ATOM     38  CA  GLY    38      24.982  -2.180 -16.190  1.00 25.00           C
ATOM     39  CA  LYS    39      21.990  -1.308 -14.061  1.00 25.00           C
ATOM     40  CA  ARG    40      19.997   1.427 -12.268  1.00 25.00           C
ATOM     41  CA  SER    41      17.981   2.083 -15.457  1.00 25.00           C
ATOM     42  CA  VAL    42      17.258  -1.662 -15.801  1.00 25.00           C
ATOM     43  CA  TYR    43      16.109  -1.800 -12.150  1.00 25.00           C
ATOM     44  CA  GLU    44      13.816   1.211 -12.731  1.00 25.00           C
ATOM     45  CA  VAL    45      12.345  -0.479 -15.838  1.00 25.00           C
ATOM     46  CA  ALA    46      11.734  -3.685 -13.836  1.00 25.00           C
ATOM     47  CA  VAL    47      10.001  -1.664 -11.083  1.00 25.00           C
ATOM     48  CA  HIS    48       7.798   0.058 -13.699  1.00 25.00           C
ATOM     49  CA  LEU    49       6.881  -3.344 -15.202  1.00 25.00           C
ATOM     50  CA  ALA    50       5.986  -4.667 -11.721  1.00 25.00           C
ATOM     51  CA  VAL    51       3.798  -1.588 -11.085  1.00 25.00           C
ATOM     52  CA  LEU    52       2.037  -2.117 -14.445  1.00 25.00           C
ATOM     53  CA  LEU    53       1.420  -5.794 -13.571  1.00 25.00           C
ATOM     54  CA  GLU    54      -0.020  -4.770 -10.174  1.00 25.00           C
ATOM     55  CA  ALA    55      -2.319  -2.231 -11.885  1.00 25.00           C
ATOM     56  CA  ASP    56      -3.497  -4.919 -14.346  1.00 25.00           C
ATOM     57  CA  LEU    57      -4.204  -7.307 -11.438  1.00 25.00           C
ATOM     58  CA  ARG    58      -6.197  -4.572  -9.645  1.00 25.00           C
ATOM     59  CA  ILE    59      -8.213  -3.916 -12.834  1.00 25.00           C
ATOM     60  CA  ALA    60      -8.936  -7.662 -13.178  1.00 25.00           C
ATOM     61  CA  THR    61      -6.961  -9.298 -16.034  1.00 25.00           C
ATOM     62  CA  GLY    62      -4.628 -12.256 -16.873  1.00 25.00           C
ATOM     63  CA  ALA    63      -1.284 -11.532 -15.123  1.00 25.00           C
ATOM     64  CA  THR    64       0.264 -14.879 -16.166  1.00 25.00           C
ATOM     65  CA  ALA    65       2.460 -13.521 -18.930  1.00 25.00           C
ATOM     66  CA  ASP    66       5.911 -15.133 -18.529  1.00 25.00           C
ATOM     67  CA  GLU    67       7.180 -12.019 -16.696  1.00 25.00           C
ATOM     68  CA  MET    68       4.137 -12.114 -14.374  1.00 25.00           C
ATOM     69  CA  ALA    69       4.771 -15.821 -13.653  1.00 25.00           C
ATOM     70  CA  GLN    70       8.442 -15.065 -12.865  1.00 25.00           C
ATOM     71  CA  PHE    71       7.379 -12.246 -10.501  1.00 25.00           C
ATOM     72  CA  TYR    72       3.827 -11.607  -9.282  1.00 25.00           C
ATOM     73  CA  ALA    73       2.205 -15.032  -8.747  1.00 25.00           C
ATOM     74  CA  VAL    74       5.612 -16.411  -7.786  1.00 25.00           C
ATOM     75  CA  PRO    75       8.474 -18.737  -8.858  1.00 25.00           C
ATOM     76  CA  VAL    76      11.800 -16.957  -8.272  1.00 25.00           C
ATOM     77  CA  LEU    77      10.090 -15.100  -5.430  1.00 25.00           C
ATOM     78  CA  PRO    78       7.399 -13.525  -3.335  1.00 25.00           C
ATOM     79  CA  GLU    79       9.328 -11.843  -0.485  1.00 25.00           C
ATOM     80  CA  GLN    80      12.390 -11.459  -2.753  1.00 25.00           C
ATOM     81  CA  LEU    81      10.201  -9.914  -5.489  1.00 25.00           C
ATOM     82  CA  VAL    82       8.702  -7.473  -2.946  1.00 25.00           C
ATOM     83  CA  ASP    83      12.216  -6.505  -1.768  1.00 25.00           C
ATOM     84  CA  ARG    84      13.298  -5.921  -5.395  1.00 25.00           C
ATOM     85  CA  LEU    85      10.212  -3.731  -5.988  1.00 25.00           C
ATOM     86  CA  ASP    86      11.005  -1.714  -2.830  1.00 25.00           C
ATOM     87  CA  GLN    87      14.618  -1.244  -4.008  1.00 25.00           C
ATOM     88  CA  SER    88      13.373  -0.062  -7.432  1.00 25.00           C
ATOM     89  CA  TRP    89      10.996   2.417  -5.739  1.00 25.00           C
ATOM     90  CA  GLN    90      13.869   3.735  -3.577  1.00 25.00           C
ATOM     91  CA  TYR    91      16.053   4.159  -6.696  1.00 25.00           C
ATOM     92  CA  TYR    92      13.224   6.055  -8.448  1.00 25.00           C
ATOM     93  CA  GLN    93      12.827   8.334  -5.396  1.00 25.00           C
ATOM     94  CA  ASP    94      16.596   9.008  -5.378  1.00 25.00           C
ATOM     95  CA  ARG    95      16.488   9.856  -9.111  1.00 25.00           C
ATOM     96  CA  LEU    96      13.559  12.249  -8.508  1.00 25.00           C
ATOM     97  CA  MET    97      15.488  13.931  -5.658  1.00 25.00           C
ATOM     98  CA  ALA    98      18.550  14.315  -7.927  1.00 25.00           C
ATOM     99  CA  ASP    99      16.361  15.860 -10.662  1.00 25.00           C
ATOM    100  CA  PHE   100      15.091  18.459  -8.249  1.00 25.00           C
ATOM    101  CA  SER   101      18.334  20.443  -8.435  1.00 25.00           C
ATOM    102  CA  THR   102      22.128  20.374  -8.153  1.00 25.00           C
ATOM    103  CA  GLU   103      23.798  22.054 -11.069  1.00 25.00           C
ATOM    104  CA  THR   104      21.176  24.585 -12.298  1.00 25.00           C
ATOM    105  CA  THR   105      18.674  26.681 -14.302  1.00 25.00           C
ATOM    106  CA  TYR   106      15.130  27.265 -15.682  1.00 25.00           C
ATOM    107  CA  TRP   107      11.812  29.048 -15.940  1.00 25.00           C
ATOM    108  CA  GLY   108      10.702  27.456 -12.603  1.00 25.00           C
ATOM    109  CA  VAL   109      10.576  23.905 -11.159  1.00 25.00           C
ATOM    110  CA  THR   110       8.706  22.689  -8.147  1.00 25.00           C
ATOM    111  CA  ASP   111       5.160  21.312  -8.718  1.00 25.00           C
ATOM    112  CA  SER   112       4.468  18.447 -11.120  1.00 25.00           C
ATOM    113  CA  THR   113       7.313  16.437 -12.650  1.00 25.00           C
ATOM    114  CA  THR   114       9.410  15.502  -9.584  1.00 25.00           C
ATOM    115  CA  GLY   115       6.240  15.318  -7.442  1.00 25.00           C
ATOM    116  CA  TRP   116       4.574  13.072 -10.059  1.00 25.00           C
ATOM    117  CA  LEU   117       7.651  10.793 -10.099  1.00 25.00           C
ATOM    118  CA  LEU   118       7.577  10.587  -6.276  1.00 25.00           C
ATOM    119  CA  GLU   119       3.855   9.694  -6.371  1.00 25.00           C
ATOM    120  CA  ALA   120       4.549   6.967  -8.968  1.00 25.00           C
ATOM    121  CA  ALA   121       7.360   5.563  -6.778  1.00 25.00           C
ATOM    122  CA  VAL   122       5.018   5.533  -3.748  1.00 25.00           C
ATOM    123  CA  HIS   123       2.350   3.704  -5.797  1.00 25.00           C
ATOM    124  CA  LEU   124       4.948   1.124  -6.922  1.00 25.00           C
ATOM    125  CA  TYR   125       6.043   0.606  -3.289  1.00 25.00           C
ATOM    126  CA  HIS   126       2.394   0.121  -2.233  1.00 25.00           C
ATOM    127  CA  HIS   127       1.895  -2.436  -5.040  1.00 25.00           C
ATOM    128  CA  ARG   128       5.046  -4.308  -3.928  1.00 25.00           C
ATOM    129  CA  SER   129       3.779  -4.344  -0.314  1.00 25.00           C
ATOM    130  CA  GLN   130       0.397  -5.705  -1.487  1.00 25.00           C
ATOM    131  CA  LEU   131       2.168  -8.439  -3.501  1.00 25.00           C
ATOM    132  CA  LEU   132       4.264  -9.373  -0.436  1.00 25.00           C
ATOM    133  CA  ASP   133       1.095  -9.559   1.706  1.00 25.00           C
ATOM    134  CA  TYR   134      -0.572 -11.803  -0.910  1.00 25.00           C
ATOM    135  CA  LEU   135       2.505 -14.083  -0.950  1.00 25.00           C
ATOM    136  CA  ASN   136       2.432 -14.290   2.874  1.00 25.00           C
ATOM    137  CA  LEU   137      -1.291 -15.183   2.778  1.00 25.00           C
ATOM    138  CA  LEU   138      -0.596 -17.910   0.180  1.00 25.00           C
ATOM    139  CA  GLY   139      -3.863 -18.684  -1.481  1.00 25.00           C
ATOM    140  CA  TYR   140      -5.926 -18.284   1.668  1.00 25.00           C
ATOM    141  CA  ASP   141      -9.105 -20.403   1.387  1.00 25.00           C
ATOM    142  CA  ILE   142     -12.556 -21.883   0.678  1.00 25.00           C
ATOM    143  CA  LYS   143     -13.044 -20.793  -2.994  1.00 25.00           C
ATOM    144  CA  LEU   144     -11.885 -20.261  -6.586  1.00 25.00           C
ATOM    145  CA  ASP   145     -14.914 -21.291  -8.647  1.00 25.00           C
ATOM    146  CA  LEU   146     -12.874 -19.969 -11.546  1.00 25.00           C
ATOM    147  CA  PHE   147     -10.204 -19.985 -14.274  1.00 25.00           C
ATOM    148  CA  GLU   148      -6.824 -18.418 -15.269  1.00 25.00           C
TER
END
