
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS393_1
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS393_1.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37       110 - 146         4.97    19.43
  LCS_AVERAGE:     23.46

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30       111 - 140         1.78    19.87
  LONGEST_CONTINUOUS_SEGMENT:    30       112 - 141         1.56    19.95
  LCS_AVERAGE:     11.73

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29       112 - 140         0.97    19.99
  LCS_AVERAGE:      9.42

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1     11   13   33     4    8   11   12   12   14   15   16   21   26   32   35   35   36   39   39   43   45   48   52 
LCS_GDT     T       2     T       2     11   13   33     4    8   11   12   12   14   15   21   24   27   32   35   35   36   39   39   41   43   48   51 
LCS_GDT     D       3     D       3     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   39   41   43   48   51 
LCS_GDT     W       4     W       4     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   39   41   43   45   48 
LCS_GDT     Q       5     Q       5     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   39   42   45   48   52 
LCS_GDT     Q       6     Q       6     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   39   43   45   48   52 
LCS_GDT     A       7     A       7     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   39   43   45   48   52 
LCS_GDT     L       8     L       8     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   39   43   45   48   52 
LCS_GDT     D       9     D       9     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   40   43   46   48   52 
LCS_GDT     R      10     R      10     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   41   44   47   50   57 
LCS_GDT     H      11     H      11     11   13   35     9   10   11   12   13   18   21   23   26   29   32   35   35   36   39   40   45   49   53   57 
LCS_GDT     V      12     V      12      3   13   35     3    3   10   11   13   15   17   22   26   29   32   35   35   37   39   42   44   47   50   57 
LCS_GDT     G      13     G      13      4   13   35     3    4    8   11   13   15   18   23   26   29   32   35   35   37   39   42   44   46   48   52 
LCS_GDT     V      14     V      14      4    5   35     3    4    5    6    7   10   15   19   22   24   27   29   32   37   38   41   44   46   50   57 
LCS_GDT     G      15     G      15      4   13   35     3    4    5    6    7   10   15   19   22   25   27   29   32   37   39   42   44   46   48   52 
LCS_GDT     V      16     V      16     11   13   35     3    4    9   11   13   13   15   20   23   28   31   33   37   40   42   46   46   47   48   52 
LCS_GDT     R      17     R      17     11   13   35     9   10   10   11   13   15   19   25   27   31   34   38   40   42   43   46   46   47   51   59 
LCS_GDT     T      18     T      18     11   13   35     9   10   10   11   13   18   21   23   26   29   33   37   40   42   43   46   46   47   55   59 
LCS_GDT     T      19     T      19     11   13   35     9   10   10   11   13   18   21   23   27   31   34   38   40   42   43   46   46   47   55   59 
LCS_GDT     R      20     R      20     11   13   35     9   10   10   11   13   18   21   25   28   33   36   38   40   42   43   46   46   47   52   56 
LCS_GDT     D      21     D      21     11   13   35     9   10   10   11   13   18   21   24   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     L      22     L      22     11   13   35     9   10   10   11   13   18   21   23   26   29   33   35   40   42   43   46   48   49   52   56 
LCS_GDT     I      23     I      23     11   13   35     9   10   10   11   13   18   21   24   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     R      24     R      24     11   13   35     9   10   10   11   13   17   21   23   28   33   36   37   40   42   43   45   48   49   52   56 
LCS_GDT     L      25     L      25     11   13   35     9   10   10   11   13   15   18   23   26   29   32   35   40   42   43   44   48   49   52   56 
LCS_GDT     I      26     I      26     11   13   35     3   10   10   11   13   15   18   23   26   29   32   35   40   42   43   44   48   49   51   55 
LCS_GDT     Q      27     Q      27     11   13   35     3    5    6   10   13   13   17   23   26   29   32   35   35   42   43   44   46   48   51   54 
LCS_GDT     P      28     P      28      5    7   35     3    5    6    6    7   15   21   23   26   29   32   35   35   36   39   43   46   48   50   54 
LCS_GDT     E      29     E      29      5    7   35     3    5    6    8   12   18   21   23   26   29   32   35   35   36   39   43   44   47   50   53 
LCS_GDT     D      30     D      30      5    7   35     3    5    7   10   13   18   19   23   26   29   32   35   35   37   40   44   46   48   50   53 
LCS_GDT     W      31     W      31      5    7   35     3    5    6    6   13   18   19   23   26   28   31   35   35   37   39   43   46   48   50   53 
LCS_GDT     D      32     D      32      5    7   35     3    3    6    6    7   13   15   19   22   25   30   31   34   36   39   43   44   45   48   52 
LCS_GDT     K      33     K      33      3    7   35     3    3    4    6    7   14   15   19   22   25   30   31   33   35   39   43   46   48   50   53 
LCS_GDT     R      34     R      34      3    7   35     1    3    4    6    7   10   15   19   22   25   27   30   31   34   35   42   44   45   48   53 
LCS_GDT     P      35     P      35      3    7   35     3    3    4    6    7   10   15   19   22   25   27   30   31   34   43   46   48   49   51   55 
LCS_GDT     I      36     I      36      3    7   35     3    3    4    7   10   10   15   19   22   25   27   30   32   36   40   43   48   49   51   55 
LCS_GDT     S      37     S      37      3    7   36     3    3    5    9   10   13   16   19   23   26   30   31   33   36   43   46   48   49   53   56 
LCS_GDT     G      38     G      38      3    7   36     3    3    4   12   12   13   14   16   22   25   30   31   33   36   43   46   48   49   53   56 
LCS_GDT     K      39     K      39      3    6   36     0    5   11   11   12   14   15   17   22   25   29   32   36   41   43   46   48   49   53   57 
LCS_GDT     R      40     R      40      3   14   36     1   10   11   11   12   14   17   20   24   26   30   32   36   39   43   46   48   49   53   56 
LCS_GDT     S      41     S      41     13   18   36    10   12   13   16   17   20   21   24   28   33   36   38   40   41   43   46   48   49   53   56 
LCS_GDT     V      42     V      42     13   18   36    10   12   13   16   17   20   21   25   28   33   36   38   40   42   43   46   48   49   53   56 
LCS_GDT     Y      43     Y      43     13   18   36    10   12   13   16   17   20   21   23   26   33   36   38   40   42   43   46   48   49   51   56 
LCS_GDT     E      44     E      44     13   18   36    10   12   13   16   17   20   21   24   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     V      45     V      45     13   18   36    10   12   13   16   17   20   21   25   28   33   36   38   40   42   43   46   48   53   55   59 
LCS_GDT     A      46     A      46     13   18   36    10   12   13   16   17   20   21   25   28   33   36   38   40   42   43   46   48   49   55   59 
LCS_GDT     V      47     V      47     13   18   36    10   12   13   16   17   20   21   24   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     H      48     H      48     13   18   36    10   12   13   16   21   22   24   25   28   33   36   38   40   42   43   46   48   49   54   59 
LCS_GDT     L      49     L      49     13   18   36    10   12   19   20   22   24   29   33   33   36   38   41   43   48   49   51   54   57   59   63 
LCS_GDT     A      50     A      50     13   18   36    10   12   13   16   17   22   26   31   33   35   36   38   41   44   46   47   50   53   59   63 
LCS_GDT     V      51     V      51     13   18   36     9   12   13   16   17   20   21   25   28   33   36   38   40   42   43   46   48   49   54   59 
LCS_GDT     L      52     L      52     13   18   36     8   12   13   16   17   21   21   25   28   33   36   38   40   42   43   46   48   51   54   59 
LCS_GDT     L      53     L      53     13   18   36     4   10   12   16   17   20   21   24   28   32   36   38   40   42   44   47   53   54   59   63 
LCS_GDT     E      54     E      54     10   18   36     8   10   12   16   17   20   21   25   28   33   36   38   40   42   43   46   48   50   53   59 
LCS_GDT     A      55     A      55     10   18   36     8   10   12   16   17   20   21   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     D      56     D      56     10   18   36     8   10   12   14   17   20   21   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     L      57     L      57     10   18   36     8   10   12   13   17   20   21   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     R      58     R      58     10   18   36     8   10   12   14   17   20   21   25   28   33   36   38   40   42   43   46   48   49   51   56 
LCS_GDT     I      59     I      59     10   18   36     8   10   12   13   17   20   21   22   27   31   36   38   40   42   43   46   46   48   51   54 
LCS_GDT     A      60     A      60     10   17   36     8   10   12   13   17   17   21   25   28   33   36   38   40   42   43   46   46   48   51   54 
LCS_GDT     T      61     T      61      4   15   36     3    4    4    7   12   17   21   25   28   33   36   38   40   42   43   46   48   49   51   54 
LCS_GDT     G      62     G      62      4    6   36     3    4    6    7   11   15   20   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     A      63     A      63      4   11   36     3    6    9    9   10   15   19   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     T      64     T      64      8   11   36     0    4    7    8   11   15   19   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     A      65     A      65      8   11   36     7    7    9    9   10   15   20   25   28   33   36   38   40   42   43   46   46   49   52   56 
LCS_GDT     D      66     D      66      8   11   36     7    7    9    9   10   11   15   24   28   33   36   38   40   41   43   46   48   49   52   56 
LCS_GDT     E      67     E      67      8   11   36     7    7    9    9   10   15   20   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     M      68     M      68      8   11   36     7    7    9    9   11   15   20   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     A      69     A      69      8   11   36     7    7    9    9   10   15   20   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     Q      70     Q      70      8   11   36     7    7    9    9   11   15   20   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     F      71     F      71      8   11   36     7    7    9    9   11   15   20   25   28   33   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     Y      72     Y      72      8   11   36     3    5    9    9   10   15   20   25   28   32   36   38   40   42   43   46   48   49   52   56 
LCS_GDT     A      73     A      73      4   11   36     3    4    6    9   10   14   20   25   28   31   35   38   40   42   43   46   46   47   49   56 
LCS_GDT     V      74     V      74      3    5   36     3    3    4    5    6   10   14   16   20   24   26   31   34   37   39   42   44   46   50   55 
LCS_GDT     P      75     P      75      3    5   35     3    3    3    5    6    9   13   16   20   23   26   31   34   36   38   41   49   53   55   59 
LCS_GDT     V      76     V      76      3    5   31     3    3    3    5    6    6    9   14   18   23   26   31   34   36   38   40   52   53   58   63 
LCS_GDT     L      77     L      77      5   23   31     4    5    6   11   21   23   24   24   26   28   33   42   47   50   52   52   54   57   59   63 
LCS_GDT     P      78     P      78     21   23   31     4    5   15   21   22   23   24   24   36   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     E      79     E      79     21   23   31     4    5    8   18   22   23   24   28   30   34   37   39   47   50   52   52   54   57   59   63 
LCS_GDT     Q      80     Q      80     21   23   31    18   19   19   21   22   23   24   28   30   32   35   38   42   45   47   51   53   57   59   63 
LCS_GDT     L      81     L      81     21   23   31    18   19   19   21   22   23   24   28   30   34   38   46   47   50   52   52   54   57   59   63 
LCS_GDT     V      82     V      82     21   23   31    18   19   19   21   22   23   24   28   36   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     D      83     D      83     21   23   31    18   19   19   21   22   23   24   28   30   32   36   39   46   47   52   52   54   57   59   63 
LCS_GDT     R      84     R      84     21   23   31    18   19   19   21   22   23   24   28   30   32   36   39   46   50   52   52   54   57   59   63 
LCS_GDT     L      85     L      85     21   23   31    18   19   19   21   22   23   24   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     D      86     D      86     21   23   31    18   19   19   21   22   23   24   29   36   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Q      87     Q      87     21   23   31    18   19   19   21   22   23   24   28   30   34   37   44   47   50   52   52   54   57   59   63 
LCS_GDT     S      88     S      88     21   23   31    18   19   19   21   22   23   24   28   30   39   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     W      89     W      89     21   23   31    18   19   19   25   30   31   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Q      90     Q      90     21   23   31    18   19   19   21   22   23   24   31   37   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Y      91     Y      91     21   23   31    18   19   19   21   22   23   24   28   30   39   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Y      92     Y      92     21   23   31    18   19   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Q      93     Q      93     21   23   31    18   19   19   28   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     D      94     D      94     21   23   31    18   19   19   21   22   29   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     R      95     R      95     21   23   31    18   19   21   30   30   31   32   35   38   39   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L      96     L      96     21   23   31    18   19   19   21   22   23   32   35   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     M      97     M      97     21   23   31     3   19   19   21   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     A      98     A      98     21   23   31    18   19   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     D      99     D      99     21   23   31     1    4   18   21   21   23   25   33   34   36   39   43   46   48   50   52   54   57   59   63 
LCS_GDT     F     100     F     100      3   23   31     3    3    3   10   13   16   22   22   26   26   29   33   37   40   44   49   51   53   59   63 
LCS_GDT     S     101     S     101      3    6   30     3    4    5    8   10   11   14   16   22   24   26   29   32   34   40   41   46   52   59   63 
LCS_GDT     T     102     T     102      5    6   28     3    4    5    5    6    9   11   16   22   24   26   27   30   33   38   40   45   49   53   57 
LCS_GDT     E     103     E     103      5    6   27     3    4    5    8    9   10   11   16   22   24   26   27   30   33   38   40   44   47   53   57 
LCS_GDT     T     104     T     104      5    6   25     3    4    5    8    9   10   11   16   22   24   26   27   30   33   38   40   44   47   53   57 
LCS_GDT     T     105     T     105      5    6   20     1    3    5    5    6    8    9   12   14   16   26   27   30   33   38   40   44   47   53   57 
LCS_GDT     Y     106     Y     106      5    6   20     3    4    5    5    6    8    9   12   14   16   19   20   29   30   35   40   43   47   50   56 
LCS_GDT     W     107     W     107      4    6   20     3    4    4    5    6    7    9   11   14   16   19   20   24   27   29   31   32   41   49   55 
LCS_GDT     G     108     G     108      4    6   25     3    4    4    6    7    9   10   12   14   17   21   26   30   34   37   40   45   49   53   57 
LCS_GDT     V     109     V     109      4    6   35     3    4    4    6    6    8   11   13   16   18   21   25   30   34   39   43   48   51   57   62 
LCS_GDT     T     110     T     110      3    6   37     3    3    4    6    6    7   12   18   19   24   28   32   34   39   44   49   51   53   59   63 
LCS_GDT     D     111     D     111      3   30   37     3    3    4    6    6    7   13   18   27   34   36   37   40   43   52   52   53   57   59   63 
LCS_GDT     S     112     S     112     29   30   37     4   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   58   61 
LCS_GDT     T     113     T     113     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   58   63 
LCS_GDT     T     114     T     114     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   58   61 
LCS_GDT     G     115     G     115     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   58   61 
LCS_GDT     W     116     W     116     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   58   63 
LCS_GDT     L     117     L     117     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L     118     L     118     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   58   63 
LCS_GDT     E     119     E     119     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     A     120     A     120     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     A     121     A     121     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     V     122     V     122     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     H     123     H     123     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L     124     L     124     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Y     125     Y     125     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     H     126     H     126     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     H     127     H     127     29   30   37    20   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     R     128     R     128     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     S     129     S     129     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Q     130     Q     130     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L     131     L     131     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L     132     L     132     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     D     133     D     133     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Y     134     Y     134     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L     135     L     135     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     N     136     N     136     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L     137     L     137     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     L     138     L     138     29   30   37    24   26   29   30   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     G     139     G     139     29   30   37     3    3    4   27   30   32   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     Y     140     Y     140     29   30   37     3    4    4    7   30   31   34   36   38   40   44   46   47   50   52   52   54   57   59   63 
LCS_GDT     D     141     D     141      4   30   37     3    3    4    5    9   12   20   33   34   36   40   46   47   50   52   52   54   57   59   63 
LCS_GDT     I     142     I     142      4    6   37     3    4    4    5    5    7    9   13   15   16   19   23   27   32   37   44   49   54   59   63 
LCS_GDT     K     143     K     143      4    6   37     3    4    4    5    9   10   11   15   16   19   22   24   32   40   45   51   54   57   59   63 
LCS_GDT     L     144     L     144      4    6   37     3    4    4    5    9   10   12   15   16   19   22   24   32   40   42   47   53   57   59   63 
LCS_GDT     D     145     D     145      4    6   37     3    4    4    5    9   10   11   15   16   17   22   24   27   32   37   42   47   53   59   63 
LCS_GDT     L     146     L     146      3    6   37     0    3    4    5    9   10   11   14   15   19   21   23   27   31   33   38   40   42   47   55 
LCS_GDT     F     147     F     147      3    6   36     1    3    4    5    7   10   12   15   18   20   21   23   27   31   34   38   46   53   59   63 
LCS_AVERAGE  LCS_A:  14.87  (   9.42   11.73   23.46 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     26     29     30     30     32     34     36     38     40     44     46     47     50     52     52     54     57     59     63 
GDT PERCENT_CA  16.33  17.69  19.73  20.41  20.41  21.77  23.13  24.49  25.85  27.21  29.93  31.29  31.97  34.01  35.37  35.37  36.73  38.78  40.14  42.86
GDT RMS_LOCAL    0.33   0.36   0.62   0.79   0.79   1.21   1.47   1.87   2.11   2.92   3.30   3.59   3.73   4.19   4.43   4.45   4.72   5.10   6.33   6.46
GDT RMS_ALL_CA  20.05  20.03  19.96  19.94  19.94  20.08  20.06  20.15  20.05  20.40  20.26  20.25  20.29  20.28  20.23  20.20  20.11  19.99  18.99  19.11

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         43.869
LGA    T       2      T       2         44.101
LGA    D       3      D       3         40.482
LGA    W       4      W       4         37.333
LGA    Q       5      Q       5         35.994
LGA    Q       6      Q       6         33.196
LGA    A       7      A       7         29.800
LGA    L       8      L       8         27.598
LGA    D       9      D       9         26.855
LGA    R      10      R      10         23.010
LGA    H      11      H      11         20.250
LGA    V      12      V      12         20.467
LGA    G      13      G      13         19.247
LGA    V      14      V      14         15.782
LGA    G      15      G      15         18.638
LGA    V      16      V      16         18.514
LGA    R      17      R      17         15.126
LGA    T      18      T      18         14.217
LGA    T      19      T      19         14.401
LGA    R      20      R      20         17.421
LGA    D      21      D      21         18.329
LGA    L      22      L      22         17.689
LGA    I      23      I      23         19.540
LGA    R      24      R      24         24.223
LGA    L      25      L      25         25.400
LGA    I      26      I      26         24.811
LGA    Q      27      Q      27         31.428
LGA    P      28      P      28         37.674
LGA    E      29      E      29         42.103
LGA    D      30      D      30         36.734
LGA    W      31      W      31         35.932
LGA    D      32      D      32         41.507
LGA    K      33      K      33         40.189
LGA    R      34      R      34         37.593
LGA    P      35      P      35         32.752
LGA    I      36      I      36         28.252
LGA    S      37      S      37         29.041
LGA    G      38      G      38         27.510
LGA    K      39      K      39         24.228
LGA    R      40      R      40         25.108
LGA    S      41      S      41         22.573
LGA    V      42      V      42         19.668
LGA    Y      43      Y      43         23.069
LGA    E      44      E      44         21.712
LGA    V      45      V      45         14.196
LGA    A      46      A      46         14.274
LGA    V      47      V      47         18.010
LGA    H      48      H      48         15.498
LGA    L      49      L      49          8.426
LGA    A      50      A      50         10.841
LGA    V      51      V      51         15.396
LGA    L      52      L      52         14.008
LGA    L      53      L      53         11.029
LGA    E      54      E      54         15.781
LGA    A      55      A      55         20.729
LGA    D      56      D      56         20.250
LGA    L      57      L      57         20.295
LGA    R      58      R      58         25.268
LGA    I      59      I      59         28.572
LGA    A      60      A      60         28.010
LGA    T      61      T      61         30.510
LGA    G      62      G      62         30.607
LGA    A      63      A      63         24.845
LGA    T      64      T      64         25.824
LGA    A      65      A      65         28.403
LGA    D      66      D      66         30.839
LGA    E      67      E      67         27.633
LGA    M      68      M      68         23.079
LGA    A      69      A      69         25.696
LGA    Q      70      Q      70         27.611
LGA    F      71      F      71         22.806
LGA    Y      72      Y      72         19.383
LGA    A      73      A      73         21.052
LGA    V      74      V      74         16.470
LGA    P      75      P      75         12.356
LGA    V      76      V      76         11.598
LGA    L      77      L      77         10.282
LGA    P      78      P      78          6.830
LGA    E      79      E      79         10.275
LGA    Q      80      Q      80         12.313
LGA    L      81      L      81          8.015
LGA    V      82      V      82          6.790
LGA    D      83      D      83         10.346
LGA    R      84      R      84          9.123
LGA    L      85      L      85          3.946
LGA    D      86      D      86          5.719
LGA    Q      87      Q      87          7.997
LGA    S      88      S      88          5.691
LGA    W      89      W      89          0.924
LGA    Q      90      Q      90          4.412
LGA    Y      91      Y      91          5.849
LGA    Y      92      Y      92          3.966
LGA    Q      93      Q      93          0.967
LGA    D      94      D      94          2.967
LGA    R      95      R      95          5.362
LGA    L      96      L      96          5.001
LGA    M      97      M      97          2.499
LGA    A      98      A      98          3.574
LGA    D      99      D      99          9.362
LGA    F     100      F     100         15.444
LGA    S     101      S     101         19.584
LGA    T     102      T     102         22.256
LGA    E     103      E     103         27.159
LGA    T     104      T     104         28.285
LGA    T     105      T     105         28.514
LGA    Y     106      Y     106         31.717
LGA    W     107      W     107         30.126
LGA    G     108      G     108         25.938
LGA    V     109      V     109         20.283
LGA    T     110      T     110         14.505
LGA    D     111      D     111          8.822
LGA    S     112      S     112          3.105
LGA    T     113      T     113          2.256
LGA    T     114      T     114          1.883
LGA    G     115      G     115          2.746
LGA    W     116      W     116          2.572
LGA    L     117      L     117          1.362
LGA    L     118      L     118          1.898
LGA    E     119      E     119          2.506
LGA    A     120      A     120          1.914
LGA    A     121      A     121          1.164
LGA    V     122      V     122          2.370
LGA    H     123      H     123          2.729
LGA    L     124      L     124          1.775
LGA    Y     125      Y     125          1.306
LGA    H     126      H     126          2.522
LGA    H     127      H     127          3.040
LGA    R     128      R     128          1.407
LGA    S     129      S     129          1.285
LGA    Q     130      Q     130          2.560
LGA    L     131      L     131          2.466
LGA    L     132      L     132          1.018
LGA    D     133      D     133          1.671
LGA    Y     134      Y     134          2.774
LGA    L     135      L     135          2.327
LGA    N     136      N     136          0.609
LGA    L     137      L     137          2.279
LGA    L     138      L     138          2.866
LGA    G     139      G     139          3.958
LGA    Y     140      Y     140          3.715
LGA    D     141      D     141          6.531
LGA    I     142      I     142         11.109
LGA    K     143      K     143         10.437
LGA    L     144      L     144         11.091
LGA    D     145      D     145         13.353
LGA    L     146      L     146         14.545
LGA    F     147      F     147         14.165

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     36    1.87    24.490    21.511     1.830

LGA_LOCAL      RMSD =  1.867  Number of atoms =   36  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.253  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 15.864  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.517296 * X  +  -0.491732 * Y  +  -0.700431 * Z  +  11.602633
  Y_new =  -0.772562 * X  +  -0.620421 * Y  +  -0.135006 * Z  +  -1.482216
  Z_new =  -0.368175 * X  +   0.610965 * Y  +  -0.700835 * Z  +  -1.245049 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.424597   -0.716996  [ DEG:   138.9192    -41.0808 ]
  Theta =   0.377046    2.764547  [ DEG:    21.6031    158.3969 ]
  Phi   =  -0.980776    2.160817  [ DEG:   -56.1943    123.8057 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS393_1                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS393_1.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   36   1.87  21.511    15.86
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS393_1
PFRMAT TS
TARGET T0369
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      22.735 -27.011   4.606  1.00 25.00           C
ATOM      2  CA  THR     2      23.176 -25.671   1.015  1.00 25.00           C
ATOM      3  CA  ASP     3      25.283 -22.561   1.678  1.00 25.00           C
ATOM      4  CA  TRP     4      22.028 -20.630   1.090  1.00 25.00           C
ATOM      5  CA  GLN     5      21.041 -21.128   4.757  1.00 25.00           C
ATOM      6  CA  GLN     6      24.479 -19.868   5.879  1.00 25.00           C
ATOM      7  CA  ALA     7      24.113 -16.790   3.630  1.00 25.00           C
ATOM      8  CA  LEU     8      20.643 -16.101   5.097  1.00 25.00           C
ATOM      9  CA  ASP     9      22.055 -16.401   8.644  1.00 25.00           C
ATOM     10  CA  ARG    10      24.877 -13.968   7.753  1.00 25.00           C
ATOM     11  CA  HIS    11      22.325 -11.496   6.323  1.00 25.00           C
ATOM     12  CA  VAL    12      23.462  -8.815   8.743  1.00 25.00           C
ATOM     13  CA  GLY    13      23.237  -8.507  12.528  1.00 25.00           C
ATOM     14  CA  VAL    14      19.941  -7.236  13.840  1.00 25.00           C
ATOM     15  CA  GLY    15      21.582  -3.824  13.765  1.00 25.00           C
ATOM     16  CA  VAL    16      24.142  -3.101  11.086  1.00 25.00           C
ATOM     17  CA  ARG    17      22.583   0.406  11.168  1.00 25.00           C
ATOM     18  CA  THR    18      22.385   1.045   7.397  1.00 25.00           C
ATOM     19  CA  THR    19      18.956  -0.656   7.263  1.00 25.00           C
ATOM     20  CA  ARG    20      17.747   1.499  10.190  1.00 25.00           C
ATOM     21  CA  ASP    21      18.998   4.654   8.416  1.00 25.00           C
ATOM     22  CA  LEU    22      17.175   3.606   5.215  1.00 25.00           C
ATOM     23  CA  ILE    23      13.958   3.018   7.210  1.00 25.00           C
ATOM     24  CA  ARG    24      14.301   6.473   8.827  1.00 25.00           C
ATOM     25  CA  LEU    25      14.800   8.064   5.379  1.00 25.00           C
ATOM     26  CA  ILE    26      11.686   6.260   4.069  1.00 25.00           C
ATOM     27  CA  GLN    27       9.887   8.541   6.609  1.00 25.00           C
ATOM     28  CA  PRO    28      11.408  11.318   8.788  1.00 25.00           C
ATOM     29  CA  GLU    29      10.561  14.990   8.107  1.00 25.00           C
ATOM     30  CA  ASP    30       7.386  13.937   6.243  1.00 25.00           C
ATOM     31  CA  TRP    31       6.197  12.439   9.564  1.00 25.00           C
ATOM     32  CA  ASP    32       6.306  15.776  11.344  1.00 25.00           C
ATOM     33  CA  LYS    33       5.095  13.809  14.374  1.00 25.00           C
ATOM     34  CA  ARG    34       2.467  11.842  16.344  1.00 25.00           C
ATOM     35  CA  PRO    35      -0.149   9.087  16.327  1.00 25.00           C
ATOM     36  CA  ILE    36       0.086   5.647  14.636  1.00 25.00           C
ATOM     37  CA  SER    37      -2.903   5.575  12.264  1.00 25.00           C
ATOM     38  CA  GLY    38      -1.035   5.773   8.960  1.00 25.00           C
ATOM     39  CA  LYS    39       1.475   6.265   6.208  1.00 25.00           C
ATOM     40  CA  ARG    40       3.785   4.074   8.336  1.00 25.00           C
ATOM     41  CA  SER    41       2.593   0.953   6.463  1.00 25.00           C
ATOM     42  CA  VAL    42       3.247   2.686   3.111  1.00 25.00           C
ATOM     43  CA  TYR    43       6.763   3.661   4.275  1.00 25.00           C
ATOM     44  CA  GLU    44       7.438   0.048   5.348  1.00 25.00           C
ATOM     45  CA  VAL    45       6.238  -1.215   1.938  1.00 25.00           C
ATOM     46  CA  ALA    46       8.530   1.294   0.174  1.00 25.00           C
ATOM     47  CA  VAL    47      11.484   0.144   2.323  1.00 25.00           C
ATOM     48  CA  HIS    48      10.716  -3.509   1.465  1.00 25.00           C
ATOM     49  CA  LEU    49      10.580  -2.632  -2.260  1.00 25.00           C
ATOM     50  CA  ALA    50      13.945  -0.826  -1.983  1.00 25.00           C
ATOM     51  CA  VAL    51      15.464  -3.872  -0.229  1.00 25.00           C
ATOM     52  CA  LEU    52      14.121  -6.163  -2.989  1.00 25.00           C
ATOM     53  CA  LEU    53      15.619  -3.864  -5.660  1.00 25.00           C
ATOM     54  CA  GLU    54      18.992  -3.914  -3.846  1.00 25.00           C
ATOM     55  CA  ALA    55      18.872  -7.738  -3.680  1.00 25.00           C
ATOM     56  CA  ASP    56      18.092  -7.902  -7.426  1.00 25.00           C
ATOM     57  CA  LEU    57      21.033  -5.563  -8.166  1.00 25.00           C
ATOM     58  CA  ARG    58      23.343  -7.755  -6.037  1.00 25.00           C
ATOM     59  CA  ILE    59      22.150 -10.874  -7.911  1.00 25.00           C
ATOM     60  CA  ALA    60      22.805  -9.142 -11.263  1.00 25.00           C
ATOM     61  CA  THR    61      23.318 -12.204 -13.397  1.00 25.00           C
ATOM     62  CA  GLY    62      19.538 -12.632 -13.494  1.00 25.00           C
ATOM     63  CA  ALA    63      16.785 -10.072 -12.905  1.00 25.00           C
ATOM     64  CA  THR    64      14.731 -11.681 -15.607  1.00 25.00           C
ATOM     65  CA  ALA    65      14.919 -15.051 -13.762  1.00 25.00           C
ATOM     66  CA  ASP    66      16.485 -16.831 -10.755  1.00 25.00           C
ATOM     67  CA  GLU    67      15.947 -13.714  -8.598  1.00 25.00           C
ATOM     68  CA  MET    68      12.290 -13.538  -9.722  1.00 25.00           C
ATOM     69  CA  ALA    69      11.820 -17.238  -8.855  1.00 25.00           C
ATOM     70  CA  GLN    70      13.362 -16.651  -5.399  1.00 25.00           C
ATOM     71  CA  PHE    71      11.018 -13.675  -4.832  1.00 25.00           C
ATOM     72  CA  TYR    72       7.242 -13.113  -5.146  1.00 25.00           C
ATOM     73  CA  ALA    73       6.986 -16.684  -6.557  1.00 25.00           C
ATOM     74  CA  VAL    74       6.660 -15.480 -10.121  1.00 25.00           C
ATOM     75  CA  PRO    75       4.018 -16.648 -12.680  1.00 25.00           C
ATOM     76  CA  VAL    76       0.794 -14.574 -12.533  1.00 25.00           C
ATOM     77  CA  LEU    77       1.108 -10.872 -13.025  1.00 25.00           C
ATOM     78  CA  PRO    78       4.609 -10.924 -11.432  1.00 25.00           C
ATOM     79  CA  GLU    79       5.498  -8.867 -14.538  1.00 25.00           C
ATOM     80  CA  GLN    80       3.441  -5.924 -13.208  1.00 25.00           C
ATOM     81  CA  LEU    81       5.226  -6.171  -9.829  1.00 25.00           C
ATOM     82  CA  VAL    82       8.623  -6.197 -11.598  1.00 25.00           C
ATOM     83  CA  ASP    83       7.618  -3.110 -13.628  1.00 25.00           C
ATOM     84  CA  ARG    84       6.530  -1.324 -10.419  1.00 25.00           C
ATOM     85  CA  LEU    85       9.873  -2.201  -8.768  1.00 25.00           C
ATOM     86  CA  ASP    86      11.759  -0.851 -11.815  1.00 25.00           C
ATOM     87  CA  GLN    87       9.721   2.389 -11.673  1.00 25.00           C
ATOM     88  CA  SER    88      10.502   2.745  -7.941  1.00 25.00           C
ATOM     89  CA  TRP    89      14.229   2.213  -8.644  1.00 25.00           C
ATOM     90  CA  GLN    90      14.113   4.873 -11.398  1.00 25.00           C
ATOM     91  CA  TYR    91      12.386   7.312  -9.003  1.00 25.00           C
ATOM     92  CA  TYR    92      15.061   6.637  -6.347  1.00 25.00           C
ATOM     93  CA  GLN    93      17.819   7.264  -8.929  1.00 25.00           C
ATOM     94  CA  ASP    94      16.145  10.553  -9.953  1.00 25.00           C
ATOM     95  CA  ARG    95      15.929  11.616  -6.280  1.00 25.00           C
ATOM     96  CA  LEU    96      19.637  10.789  -5.797  1.00 25.00           C
ATOM     97  CA  MET    97      20.525  12.844  -8.903  1.00 25.00           C
ATOM     98  CA  ALA    98      18.468  15.788  -7.573  1.00 25.00           C
ATOM     99  CA  ASP    99      20.253  15.541  -4.194  1.00 25.00           C
ATOM    100  CA  PHE   100      23.388  13.705  -3.069  1.00 25.00           C
ATOM    101  CA  SER   101      26.138  15.709  -4.772  1.00 25.00           C
ATOM    102  CA  THR   102      26.919  19.121  -6.110  1.00 25.00           C
ATOM    103  CA  GLU   103      26.588  21.925  -3.588  1.00 25.00           C
ATOM    104  CA  THR   104      23.072  22.605  -2.227  1.00 25.00           C
ATOM    105  CA  THR   105      20.069  24.962  -2.380  1.00 25.00           C
ATOM    106  CA  TYR   106      18.189  28.186  -3.369  1.00 25.00           C
ATOM    107  CA  TRP   107      15.402  28.344  -5.966  1.00 25.00           C
ATOM    108  CA  GLY   108      13.216  26.340  -3.580  1.00 25.00           C
ATOM    109  CA  VAL   109      12.653  24.051  -6.538  1.00 25.00           C
ATOM    110  CA  THR   110      12.179  21.883  -9.645  1.00 25.00           C
ATOM    111  CA  ASP   111       9.410  21.179 -12.135  1.00 25.00           C
ATOM    112  CA  SER   112       6.667  18.555 -12.561  1.00 25.00           C
ATOM    113  CA  THR   113       9.372  15.904 -11.865  1.00 25.00           C
ATOM    114  CA  THR   114       8.261  15.847  -8.200  1.00 25.00           C
ATOM    115  CA  GLY   115       4.812  14.548  -9.240  1.00 25.00           C
ATOM    116  CA  TRP   116       6.454  11.809 -11.354  1.00 25.00           C
ATOM    117  CA  LEU   117       8.665  10.814  -8.390  1.00 25.00           C
ATOM    118  CA  LEU   118       5.590  10.653  -6.116  1.00 25.00           C
ATOM    119  CA  GLU   119       3.779   8.457  -8.680  1.00 25.00           C
ATOM    120  CA  ALA   120       6.818   6.135  -8.874  1.00 25.00           C
ATOM    121  CA  ALA   121       6.906   5.890  -5.053  1.00 25.00           C
ATOM    122  CA  VAL   122       3.169   5.052  -4.997  1.00 25.00           C
ATOM    123  CA  HIS   123       3.712   2.342  -7.648  1.00 25.00           C
ATOM    124  CA  LEU   124       6.593   0.876  -5.595  1.00 25.00           C
ATOM    125  CA  TYR   125       4.383   0.849  -2.466  1.00 25.00           C
ATOM    126  CA  HIS   126       1.603  -0.922  -4.416  1.00 25.00           C
ATOM    127  CA  HIS   127       4.112  -3.526  -5.677  1.00 25.00           C
ATOM    128  CA  ARG   128       5.354  -4.098  -2.100  1.00 25.00           C
ATOM    129  CA  SER   129       1.746  -4.541  -0.892  1.00 25.00           C
ATOM    130  CA  GLN   130       1.091  -7.061  -3.699  1.00 25.00           C
ATOM    131  CA  LEU   131       4.259  -8.989  -2.743  1.00 25.00           C
ATOM    132  CA  LEU   132       3.148  -9.044   0.922  1.00 25.00           C
ATOM    133  CA  ASP   133      -0.302 -10.344  -0.117  1.00 25.00           C
ATOM    134  CA  TYR   134       1.340 -13.083  -2.232  1.00 25.00           C
ATOM    135  CA  LEU   135       3.552 -14.078   0.732  1.00 25.00           C
ATOM    136  CA  ASN   136       0.475 -14.240   3.006  1.00 25.00           C
ATOM    137  CA  LEU   137      -1.335 -16.434   0.442  1.00 25.00           C
ATOM    138  CA  LEU   138       1.704 -18.757   0.248  1.00 25.00           C
ATOM    139  CA  GLY   139       3.890 -18.313   3.373  1.00 25.00           C
ATOM    140  CA  TYR   140       1.182 -18.613   6.041  1.00 25.00           C
ATOM    141  CA  ASP   141      -0.995 -21.304   7.710  1.00 25.00           C
ATOM    142  CA  ILE   142       0.568 -21.951  11.117  1.00 25.00           C
ATOM    143  CA  LYS   143       4.373 -21.917  10.902  1.00 25.00           C
ATOM    144  CA  LEU   144       4.983 -18.293  11.764  1.00 25.00           C
ATOM    145  CA  ASP   145       5.073 -16.614  15.131  1.00 25.00           C
ATOM    146  CA  LEU   146       7.276 -13.938  16.665  1.00 25.00           C
ATOM    147  CA  PHE   147      10.587 -12.482  15.599  1.00 25.00           C
ATOM    148  CA  GLU   148       9.081 -10.728  12.595  1.00 25.00           C
TER
END
