
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS393_5
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS393_5.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35        39 - 73          4.96    24.46
  LONGEST_CONTINUOUS_SEGMENT:    35        40 - 74          4.80    24.36
  LONGEST_CONTINUOUS_SEGMENT:    35        41 - 75          4.97    24.23
  LONGEST_CONTINUOUS_SEGMENT:    35       107 - 141         4.96    22.48
  LCS_AVERAGE:     22.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29       111 - 139         1.77    21.76
  LCS_AVERAGE:     11.74

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27       112 - 138         0.43    21.82
  LCS_AVERAGE:      8.90

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3   11   23     3    3    3    3    5    5    9   14   17   20   21   21   22   23   26   28   28   31   34   34 
LCS_GDT     T       2     T       2     10   13   23     3   10   10   11   11   12   13   14   17   20   21   21   22   23   26   28   28   31   34   35 
LCS_GDT     D       3     D       3     10   13   23     9   10   10   11   11   12   13   14   17   20   21   21   22   23   26   28   28   32   34   35 
LCS_GDT     W       4     W       4     10   13   23     9   10   10   11   11   12   13   14   17   20   21   21   22   23   26   28   28   32   34   36 
LCS_GDT     Q       5     Q       5     10   13   23     9   10   10   11   11   12   13   14   17   20   21   21   22   24   26   28   29   32   34   38 
LCS_GDT     Q       6     Q       6     10   13   23     9   10   10   11   11   12   13   15   17   20   21   21   23   24   27   29   32   34   37   40 
LCS_GDT     A       7     A       7     10   13   23     9   10   10   11   13   14   17   18   19   21   24   26   27   28   30   31   34   35   37   40 
LCS_GDT     L       8     L       8     10   13   30     9   10   10   11   13   14   17   17   18   21   24   26   27   28   30   31   34   36   39   43 
LCS_GDT     D       9     D       9     10   13   30     9   10   10   11   11   12   13   15   17   21   23   23   23   28   30   32   37   40   44   46 
LCS_GDT     R      10     R      10     10   13   30     9   10   10   11   11   12   15   18   19   23   24   26   26   28   30   32   37   40   44   46 
LCS_GDT     H      11     H      11     10   13   30     9   10   11   16   17   19   20   22   22   25   25   26   27   28   30   32   37   40   44   46 
LCS_GDT     V      12     V      12      3   13   30     3    3    4    5   10   12   15   18   22   25   25   25   26   28   30   35   39   45   48   51 
LCS_GDT     G      13     G      13      3   13   30     3    3    9   11   11   14   17   18   22   25   25   25   26   31   35   38   41   46   49   51 
LCS_GDT     V      14     V      14      3   13   30     3    3    5   11   11   16   17   18   22   25   25   25   26   28   35   38   41   46   49   51 
LCS_GDT     G      15     G      15     12   13   30     3    3    7   12   12   14   17   18   22   25   25   25   26   31   35   38   43   46   49   51 
LCS_GDT     V      16     V      16     12   13   30    10   11   11   12   12   14   17   18   22   25   25   26   30   33   41   43   47   50   54   57 
LCS_GDT     R      17     R      17     12   13   30    10   11   11   12   12   13   17   18   22   25   25   29   33   37   41   45   49   52   56   61 
LCS_GDT     T      18     T      18     12   13   30    10   11   11   12   12   13   17   18   22   25   25   29   32   36   41   45   48   52   56   61 
LCS_GDT     T      19     T      19     12   13   30    10   11   11   12   12   14   17   18   22   25   25   29   32   37   41   45   49   52   56   61 
LCS_GDT     R      20     R      20     12   13   30    10   11   11   12   12   14   17   18   22   25   28   30   34   39   41   46   50   52   56   61 
LCS_GDT     D      21     D      21     12   13   30    10   11   11   12   12   14   17   18   22   25   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     L      22     L      22     12   13   30    10   11   11   12   12   14   17   18   22   25   28   31   34   37   41   46   50   52   56   61 
LCS_GDT     I      23     I      23     12   13   30    10   11   11   12   12   14   17   18   22   25   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     R      24     R      24     12   13   30    10   11   11   12   12   14   17   18   22   25   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     L      25     L      25     12   13   30    10   11   11   12   12   14   17   18   22   25   27   31   36   37   40   46   50   52   56   61 
LCS_GDT     I      26     I      26     12   13   30    10   11   11   12   12   13   14   18   22   25   27   31   36   37   40   46   50   52   56   61 
LCS_GDT     Q      27     Q      27      6   13   30     4    6    6    7   12   12   17   18   22   25   27   31   36   37   41   46   50   52   56   61 
LCS_GDT     P      28     P      28      6    8   30     5    6    6    6    7    9   11   14   19   22   27   31   36   39   41   46   50   52   56   61 
LCS_GDT     E      29     E      29      6    8   30     5    6    6    6    7    9   11   14   17   21   26   31   34   37   40   46   50   52   56   61 
LCS_GDT     D      30     D      30      6    8   30     5    6    6    6   10   14   17   18   22   25   27   31   36   39   41   46   50   52   56   61 
LCS_GDT     W      31     W      31      6    8   30     5    6    6    7    9   14   17   18   22   25   27   31   36   39   41   46   50   52   56   61 
LCS_GDT     D      32     D      32      6    8   30     5    6    6    7   11   14   17   18   22   25   25   25   29   35   40   46   48   51   56   61 
LCS_GDT     K      33     K      33      4    6   30     3    3    5    5   11   14   17   18   22   25   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     R      34     R      34      4    6   30     3    3    5    6   11   14   17   18   22   25   25   25   33   36   40   46   48   52   56   61 
LCS_GDT     P      35     P      35      4    6   30     3    3    5    6   10   15   17   20   22   25   25   29   33   36   40   46   50   52   56   61 
LCS_GDT     I      36     I      36      4    6   30     3    4    4    7   11   14   17   20   22   25   25   26   29   36   40   46   47   51   56   58 
LCS_GDT     S      37     S      37      4    5   30     3    5    6    7   10   13   15   17   21   25   27   31   36   38   41   46   50   52   56   61 
LCS_GDT     G      38     G      38      4    5   30     4    5    6    6    8   11   13   15   19   23   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     K      39     K      39      4    5   35     4    5    6    6    8   10   13   15   19   23   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     R      40     R      40      4   14   35     3    3    4    5    8   10   13   16   21   23   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     S      41     S      41     13   18   35    10   12   12   16   17   19   21   22   22   25   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     V      42     V      42     13   18   35    10   12   12   16   17   19   21   22   22   25   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     Y      43     Y      43     13   18   35    10   12   12   16   17   19   21   22   22   25   27   29   32   37   41   48   51   57   60   63 
LCS_GDT     E      44     E      44     13   18   35    10   12   12   16   17   19   21   22   22   25   27   29   33   39   41   46   51   57   60   63 
LCS_GDT     V      45     V      45     13   18   35    10   12   12   16   17   19   21   22   22   25   28   31   36   39   44   51   54   59   61   64 
LCS_GDT     A      46     A      46     13   18   35    10   12   12   16   17   19   21   22   22   26   33   38   45   49   54   57   60   61   63   67 
LCS_GDT     V      47     V      47     13   18   35    10   12   12   16   17   19   21   23   36   39   46   50   54   55   57   58   61   63   66   67 
LCS_GDT     H      48     H      48     13   18   35    10   12   12   16   17   19   21   23   33   39   46   50   54   55   57   58   61   63   66   67 
LCS_GDT     L      49     L      49     13   18   35    10   12   12   16   17   19   21   22   37   38   40   47   51   55   57   57   61   61   66   67 
LCS_GDT     A      50     A      50     13   18   35    10   12   12   16   20   28   32   35   37   40   45   49   54   55   57   58   61   62   66   67 
LCS_GDT     V      51     V      51     13   18   35     9   12   12   16   17   19   21   31   34   36   42   47   54   55   57   58   61   63   66   67 
LCS_GDT     L      52     L      52     13   18   35     8   12   12   16   19   21   32   35   37   39   42   48   54   55   57   58   61   63   66   67 
LCS_GDT     L      53     L      53     13   18   35     4   10   11   16   17   19   21   22   22   25   28   31   36   39   41   47   50   52   56   61 
LCS_GDT     E      54     E      54     10   18   35     8   10   11   16   17   19   21   22   22   23   28   31   36   39   41   46   50   52   56   61 
LCS_GDT     A      55     A      55     10   18   35     8   10   11   16   17   19   21   22   22   23   27   30   33   39   45   47   50   52   56   61 
LCS_GDT     D      56     D      56     10   18   35     8   10   11   13   17   19   21   22   22   25   27   29   33   39   42   47   50   52   56   61 
LCS_GDT     L      57     L      57     10   18   35     8   10   11   12   16   19   21   22   22   25   27   30   33   39   41   46   50   52   56   61 
LCS_GDT     R      58     R      58     10   18   35     8   10   11   13   17   19   21   22   22   23   27   30   33   39   41   46   50   52   56   61 
LCS_GDT     I      59     I      59     10   18   35     8   10   11   12   16   19   21   22   22   23   25   27   31   35   40   46   49   52   56   59 
LCS_GDT     A      60     A      60     10   17   35     8   10   11   12   16   17   21   22   22   25   27   29   32   35   41   43   47   51   56   61 
LCS_GDT     T      61     T      61      4   14   35     3    4    8   11   13   14   18   20   22   25   27   29   32   35   41   42   47   52   56   61 
LCS_GDT     G      62     G      62      4   12   35     3    4    8   11   12   14   18   20   22   25   27   29   32   36   40   42   47   51   56   61 
LCS_GDT     A      63     A      63      4   12   35     3    4    8   11   12   14   18   20   22   25   27   30   33   39   41   46   50   52   56   61 
LCS_GDT     T      64     T      64      4   12   35     3    4    8   11   12   14   18   20   22   25   27   30   33   39   41   46   50   52   56   61 
LCS_GDT     A      65     A      65      7   12   35     7    7    8   11   12   14   18   20   22   25   27   30   33   39   41   46   50   52   56   61 
LCS_GDT     D      66     D      66      7   12   35     7    7    8   11   12   14   18   20   22   25   27   30   34   39   41   46   50   52   56   61 
LCS_GDT     E      67     E      67      7   12   35     7    7    8    9   12   14   18   20   22   25   27   31   36   39   42   47   50   52   56   61 
LCS_GDT     M      68     M      68      7   12   35     7    7    8    9   12   14   18   20   22   27   32   36   40   43   46   47   50   52   56   61 
LCS_GDT     A      69     A      69      7   12   35     7    7    8    9   11   14   18   20   22   25   28   32   38   41   46   47   50   52   56   61 
LCS_GDT     Q      70     Q      70      7   12   35     7    7    8    9   11   14   18   20   22   27   32   36   40   43   46   47   50   52   56   61 
LCS_GDT     F      71     F      71      7   12   35     7    7    8    9   11   12   17   22   28   35   38   41   43   45   48   51   54   58   62   64 
LCS_GDT     Y      72     Y      72      4   12   35     3    4    4   13   21   24   25   26   29   35   38   41   45   51   54   58   60   63   66   67 
LCS_GDT     A      73     A      73      4   12   35     3    4    8    8   13   22   25   26   29   34   38   41   43   45   51   54   58   63   64   66 
LCS_GDT     V      74     V      74      4    6   35     3    4    5    5   12   15   25   29   33   36   38   41   43   47   51   54   58   63   64   66 
LCS_GDT     P      75     P      75      4   24   35     3    4    9   13   21   24   25   26   30   36   38   41   45   49   54   58   60   63   66   67 
LCS_GDT     V      76     V      76      5   24   34     3    4    5    6    6    9   11   14   19   27   35   41   43   47   51   55   60   63   66   67 
LCS_GDT     L      77     L      77      5   24   34     5    5   12   18   22   24   27   31   35   37   40   42   47   52   54   58   60   63   66   67 
LCS_GDT     P      78     P      78     21   24   34     5    5   13   20   27   30   30   32   35   37   40   45   50   52   55   58   61   63   66   67 
LCS_GDT     E      79     E      79     21   24   34     5    5    8   18   22   24   25   31   35   37   40   44   49   52   54   58   61   63   66   67 
LCS_GDT     Q      80     Q      80     21   24   34    18   19   19   20   27   30   30   33   38   42   47   48   54   55   57   58   61   63   66   67 
LCS_GDT     L      81     L      81     21   24   34    18   19   19   20   27   30   30   33   40   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     V      82     V      82     21   24   34    18   19   19   20   27   30   30   32   39   42   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     D      83     D      83     21   24   34    18   19   19   20   27   30   30   33   39   42   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     R      84     R      84     21   24   34    18   19   19   20   27   30   30   34   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L      85     L      85     21   24   34    18   19   19   20   27   30   30   37   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     D      86     D      86     21   24   34    18   19   19   20   27   30   30   33   40   42   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Q      87     Q      87     21   24   34    18   19   19   20   27   30   30   37   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     S      88     S      88     21   24   34    18   19   19   20   27   30   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     W      89     W      89     21   24   34    18   19   19   20   27   30   30   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Q      90     Q      90     21   24   34    18   19   19   20   27   30   32   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Y      91     Y      91     21   24   34    18   19   19   20   27   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Y      92     Y      92     21   24   34    18   19   19   20   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Q      93     Q      93     21   24   34    18   19   19   20   27   30   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     D      94     D      94     21   24   34    18   19   19   20   30   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     R      95     R      95     21   24   34    18   19   19   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L      96     L      96     21   24   34    18   19   19   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     M      97     M      97     21   24   34     3   19   19   20   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     A      98     A      98     21   24   34    18   19   19   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     D      99     D      99     21   24   34     3    4   18   20   28   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     F     100     F     100      4   22   34     3    8   14   23   28   31   35   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     S     101     S     101      4    5   33     3    4    5    8   16   23   30   30   33   38   45   50   52   55   57   58   61   63   66   67 
LCS_GDT     T     102     T     102      4    5   32     3    4    4    5    6    7    9   10   13   21   25   31   35   43   50   54   58   60   65   67 
LCS_GDT     E     103     E     103      4    5   29     4    4    5    5    6    9   10   13   16   20   23   28   35   39   42   48   53   57   60   67 
LCS_GDT     T     104     T     104      4    5   29     4    4    5    5    5    7    9   13   16   20   23   30   35   39   42   46   50   56   59   63 
LCS_GDT     T     105     T     105      4    5   26     4    4    5    5    5    6    8   10   12   13   17   19   23   27   32   38   45   48   55   58 
LCS_GDT     Y     106     Y     106      4    7   34     4    4    5    6    8    9   10   13   15   17   19   23   26   29   34   40   45   49   55   58 
LCS_GDT     W     107     W     107      4    7   35     3    4    5    6    8    8   10   13   15   19   20   23   26   29   34   40   45   49   53   58 
LCS_GDT     G     108     G     108      3    7   35     3    3    4    6    8    9   12   17   20   25   30   34   37   43   49   53   58   59   63   67 
LCS_GDT     V     109     V     109      3    7   35     3    3    4    6    9   13   18   22   27   31   35   42   46   50   53   57   60   61   66   67 
LCS_GDT     T     110     T     110      3    7   35     4    5    6    6    9   13   19   23   28   33   39   43   46   50   55   57   61   63   66   67 
LCS_GDT     D     111     D     111      3   29   35     4    5    6   10   15   22   30   31   37   43   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     S     112     S     112     27   29   35     5   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     T     113     T     113     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     T     114     T     114     27   29   35    20   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     G     115     G     115     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     W     116     W     116     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     117     L     117     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     118     L     118     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     E     119     E     119     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     A     120     A     120     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     A     121     A     121     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     V     122     V     122     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     H     123     H     123     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     124     L     124     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Y     125     Y     125     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     H     126     H     126     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     H     127     H     127     27   29   35    20   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     R     128     R     128     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     S     129     S     129     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Q     130     Q     130     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     131     L     131     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     132     L     132     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     D     133     D     133     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     Y     134     Y     134     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     135     L     135     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     N     136     N     136     27   29   35    24   27   27   28   31   33   37   40   43   44   46   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     137     L     137     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     L     138     L     138     27   29   35    24   27   27   28   31   33   37   40   43   44   47   50   54   55   57   58   61   63   66   67 
LCS_GDT     G     139     G     139      4   29   35     4    4    5    8   11   17   21   29   37   38   42   49   52   55   57   57   61   62   66   67 
LCS_GDT     Y     140     Y     140      4    6   35     4    4    4    7    7   11   17   21   26   29   34   42   46   52   54   57   61   62   66   67 
LCS_GDT     D     141     D     141      3    6   35     3    3    4    7    7    7    8    9   12   18   26   31   37   41   45   51   54   58   61   66 
LCS_GDT     I     142     I     142      4    6   34     3    3    4    5    6    7    9   10   12   13   14   17   19   23   25   28   29   32   35   38 
LCS_GDT     K     143     K     143      4    6   15     4    4    4    7    7    7    9   10   12   13   16   18   20   24   25   28   29   32   35   38 
LCS_GDT     L     144     L     144      4    6   15     4    4    4    7    7    7    9   10   12   13   16   18   20   24   25   28   29   32   35   38 
LCS_GDT     D     145     D     145      4    6   15     4    4    4    7    7    7    9   10   12   13   14   17   20   24   25   28   29   32   35   38 
LCS_GDT     L     146     L     146      4    6   15     4    4    4    7    7    7    9   10   12   13   14   17   20   23   25   28   29   32   35   38 
LCS_GDT     F     147     F     147      3    6   15     3    3    3    5    6    7    9   10   12   19   22   24   27   29   31   32   33   34   35   38 
LCS_AVERAGE  LCS_A:  14.21  (   8.90   11.74   22.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     27     27     28     31     33     37     40     43     44     47     50     54     55     57     58     61     63     66     67 
GDT PERCENT_CA  16.33  18.37  18.37  19.05  21.09  22.45  25.17  27.21  29.25  29.93  31.97  34.01  36.73  37.41  38.78  39.46  41.50  42.86  44.90  45.58
GDT RMS_LOCAL    0.33   0.43   0.43   0.60   0.97   1.21   1.86   2.27   2.72   2.87   3.40   3.54   3.92   4.04   4.27   4.57   4.91   5.29   5.63   5.80
GDT RMS_ALL_CA  21.81  21.82  21.82  21.81  21.81  21.81  21.91  21.95  22.06  22.10  22.26  22.15  22.19  22.18  22.02  22.44  22.03  22.68  22.19  22.19

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         46.743
LGA    T       2      T       2         48.679
LGA    D       3      D       3         49.369
LGA    W       4      W       4         42.509
LGA    Q       5      Q       5         39.504
LGA    Q       6      Q       6         44.431
LGA    A       7      A       7         42.047
LGA    L       8      L       8         34.982
LGA    D       9      D       9         37.454
LGA    R      10      R      10         41.540
LGA    H      11      H      11         35.879
LGA    V      12      V      12         34.066
LGA    G      13      G      13         37.868
LGA    V      14      V      14         35.291
LGA    G      15      G      15         33.062
LGA    V      16      V      16         31.901
LGA    R      17      R      17         34.334
LGA    T      18      T      18         30.571
LGA    T      19      T      19         26.964
LGA    R      20      R      20         30.294
LGA    D      21      D      21         31.658
LGA    L      22      L      22         26.754
LGA    I      23      I      23         26.420
LGA    R      24      R      24         31.462
LGA    L      25      L      25         30.525
LGA    I      26      I      26         27.203
LGA    Q      27      Q      27         32.664
LGA    P      28      P      28         34.210
LGA    E      29      E      29         39.282
LGA    D      30      D      30         36.623
LGA    W      31      W      31         30.914
LGA    D      32      D      32         34.619
LGA    K      33      K      33         36.379
LGA    R      34      R      34         34.750
LGA    P      35      P      35         36.394
LGA    I      36      I      36         33.845
LGA    S      37      S      37         34.823
LGA    G      38      G      38         34.560
LGA    K      39      K      39         28.066
LGA    R      40      R      40         24.046
LGA    S      41      S      41         24.167
LGA    V      42      V      42         20.714
LGA    Y      43      Y      43         15.099
LGA    E      44      E      44         15.361
LGA    V      45      V      45         14.560
LGA    A      46      A      46         10.278
LGA    V      47      V      47          6.433
LGA    H      48      H      48          6.648
LGA    L      49      L      49          8.052
LGA    A      50      A      50          6.671
LGA    V      51      V      51          6.871
LGA    L      52      L      52          6.442
LGA    L      53      L      53         12.059
LGA    E      54      E      54         14.113
LGA    A      55      A      55         12.366
LGA    D      56      D      56         12.785
LGA    L      57      L      57         19.235
LGA    R      58      R      58         20.967
LGA    I      59      I      59         18.388
LGA    A      60      A      60         22.222
LGA    T      61      T      61         28.431
LGA    G      62      G      62         28.066
LGA    A      63      A      63         23.821
LGA    T      64      T      64         27.044
LGA    A      65      A      65         23.602
LGA    D      66      D      66         25.662
LGA    E      67      E      67         22.207
LGA    M      68      M      68         17.506
LGA    A      69      A      69         19.890
LGA    Q      70      Q      70         19.543
LGA    F      71      F      71         14.169
LGA    Y      72      Y      72         10.944
LGA    A      73      A      73         13.938
LGA    V      74      V      74         14.055
LGA    P      75      P      75         12.771
LGA    V      76      V      76         13.143
LGA    L      77      L      77         11.869
LGA    P      78      P      78          9.945
LGA    E      79      E      79         10.783
LGA    Q      80      Q      80          7.863
LGA    L      81      L      81          5.527
LGA    V      82      V      82          6.744
LGA    D      83      D      83          6.984
LGA    R      84      R      84          4.754
LGA    L      85      L      85          4.225
LGA    D      86      D      86          5.582
LGA    Q      87      Q      87          4.564
LGA    S      88      S      88          2.601
LGA    W      89      W      89          3.612
LGA    Q      90      Q      90          3.750
LGA    Y      91      Y      91          2.120
LGA    Y      92      Y      92          2.186
LGA    Q      93      Q      93          3.057
LGA    D      94      D      94          1.850
LGA    R      95      R      95          2.591
LGA    L      96      L      96          3.683
LGA    M      97      M      97          2.943
LGA    A      98      A      98          3.354
LGA    D      99      D      99          3.714
LGA    F     100      F     100          3.945
LGA    S     101      S     101          8.812
LGA    T     102      T     102         15.656
LGA    E     103      E     103         19.059
LGA    T     104      T     104         20.415
LGA    T     105      T     105         23.059
LGA    Y     106      Y     106         24.072
LGA    W     107      W     107         23.594
LGA    G     108      G     108         17.594
LGA    V     109      V     109         13.736
LGA    T     110      T     110         11.720
LGA    D     111      D     111          6.304
LGA    S     112      S     112          0.618
LGA    T     113      T     113          0.788
LGA    T     114      T     114          2.155
LGA    G     115      G     115          2.352
LGA    W     116      W     116          1.106
LGA    L     117      L     117          1.161
LGA    L     118      L     118          2.038
LGA    E     119      E     119          1.478
LGA    A     120      A     120          1.020
LGA    A     121      A     121          2.330
LGA    V     122      V     122          2.298
LGA    H     123      H     123          1.261
LGA    L     124      L     124          2.280
LGA    Y     125      Y     125          3.185
LGA    H     126      H     126          2.563
LGA    H     127      H     127          2.353
LGA    R     128      R     128          3.003
LGA    S     129      S     129          3.230
LGA    Q     130      Q     130          2.288
LGA    L     131      L     131          2.667
LGA    L     132      L     132          3.526
LGA    D     133      D     133          3.150
LGA    Y     134      Y     134          2.585
LGA    L     135      L     135          3.379
LGA    N     136      N     136          3.695
LGA    L     137      L     137          3.200
LGA    L     138      L     138          3.686
LGA    G     139      G     139          9.928
LGA    Y     140      Y     140         12.273
LGA    D     141      D     141         15.934
LGA    I     142      I     142         21.485
LGA    K     143      K     143         27.473
LGA    L     144      L     144         29.438
LGA    D     145      D     145         35.757
LGA    L     146      L     146         34.025
LGA    F     147      F     147         35.592

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     40    2.27    26.020    22.677     1.685

LGA_LOCAL      RMSD =  2.275  Number of atoms =   40  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.187  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 18.737  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.636939 * X  +   0.359682 * Y  +   0.681864 * Z  +   4.707375
  Y_new =  -0.192593 * X  +  -0.930682 * Y  +   0.311030 * Z  +  -1.112213
  Z_new =   0.746470 * X  +   0.066785 * Y  +   0.662059 * Z  + -14.357300 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.100534   -3.041058  [ DEG:     5.7602   -174.2398 ]
  Theta =  -0.842741   -2.298852  [ DEG:   -48.2855   -131.7145 ]
  Phi   =  -2.847960    0.293632  [ DEG:  -163.1761     16.8239 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS393_5                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS393_5.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   40   2.27  22.677    18.74
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS393_5
PFRMAT TS
TARGET T0369
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1       4.121 -16.094 -31.063  1.00 25.00           C
ATOM      2  CA  THR     2       0.675 -14.595 -31.854  1.00 25.00           C
ATOM      3  CA  ASP     3      -2.411 -15.336 -29.809  1.00 25.00           C
ATOM      4  CA  TRP     4      -1.721 -13.660 -26.435  1.00 25.00           C
ATOM      5  CA  GLN     5      -1.276 -10.279 -28.178  1.00 25.00           C
ATOM      6  CA  GLN     6      -4.582 -10.778 -30.045  1.00 25.00           C
ATOM      7  CA  ALA     7      -6.341 -11.635 -26.753  1.00 25.00           C
ATOM      8  CA  LEU     8      -4.885  -8.487 -25.128  1.00 25.00           C
ATOM      9  CA  ASP     9      -6.094  -6.374 -28.083  1.00 25.00           C
ATOM     10  CA  ARG    10      -9.591  -7.904 -27.781  1.00 25.00           C
ATOM     11  CA  HIS    11      -9.629  -7.136 -24.029  1.00 25.00           C
ATOM     12  CA  VAL    12     -12.977  -5.437 -23.134  1.00 25.00           C
ATOM     13  CA  GLY    13     -12.995  -3.107 -26.181  1.00 25.00           C
ATOM     14  CA  VAL    14      -9.506  -2.147 -25.206  1.00 25.00           C
ATOM     15  CA  GLY    15      -9.904   1.352 -26.754  1.00 25.00           C
ATOM     16  CA  VAL    16      -8.747   4.920 -26.125  1.00 25.00           C
ATOM     17  CA  ARG    17      -8.124   7.933 -23.887  1.00 25.00           C
ATOM     18  CA  THR    18      -6.803   6.067 -20.815  1.00 25.00           C
ATOM     19  CA  THR    19      -4.734   3.766 -23.072  1.00 25.00           C
ATOM     20  CA  ARG    20      -3.303   6.809 -24.904  1.00 25.00           C
ATOM     21  CA  ASP    21      -2.398   8.431 -21.555  1.00 25.00           C
ATOM     22  CA  LEU    22      -0.673   5.203 -20.430  1.00 25.00           C
ATOM     23  CA  ILE    23       1.293   5.080 -23.715  1.00 25.00           C
ATOM     24  CA  ARG    24       2.357   8.729 -23.243  1.00 25.00           C
ATOM     25  CA  LEU    25       3.492   7.962 -19.667  1.00 25.00           C
ATOM     26  CA  ILE    26       5.506   4.957 -20.925  1.00 25.00           C
ATOM     27  CA  GLN    27       6.705   6.380 -24.176  1.00 25.00           C
ATOM     28  CA  PRO    28       5.339   7.096 -27.633  1.00 25.00           C
ATOM     29  CA  GLU    29       6.589  10.472 -28.941  1.00 25.00           C
ATOM     30  CA  ASP    30      10.212   9.409 -28.293  1.00 25.00           C
ATOM     31  CA  TRP    31      11.272   5.841 -29.201  1.00 25.00           C
ATOM     32  CA  ASP    32      11.975   7.353 -32.640  1.00 25.00           C
ATOM     33  CA  LYS    33      13.632   3.927 -33.296  1.00 25.00           C
ATOM     34  CA  ARG    34      14.065   0.141 -33.214  1.00 25.00           C
ATOM     35  CA  PRO    35      16.126  -1.142 -30.283  1.00 25.00           C
ATOM     36  CA  ILE    36      15.507  -4.012 -27.897  1.00 25.00           C
ATOM     37  CA  SER    37      18.228  -5.915 -26.011  1.00 25.00           C
ATOM     38  CA  GLY    38      19.866  -3.040 -24.165  1.00 25.00           C
ATOM     39  CA  LYS    39      17.203  -2.626 -21.457  1.00 25.00           C
ATOM     40  CA  ARG    40      17.287  -0.630 -18.188  1.00 25.00           C
ATOM     41  CA  SER    41      14.850   1.932 -19.662  1.00 25.00           C
ATOM     42  CA  VAL    42      12.507  -0.892 -20.759  1.00 25.00           C
ATOM     43  CA  TYR    43      12.652  -2.412 -17.247  1.00 25.00           C
ATOM     44  CA  GLU    44      11.840   1.000 -15.711  1.00 25.00           C
ATOM     45  CA  VAL    45       8.871   1.396 -18.099  1.00 25.00           C
ATOM     46  CA  ALA    46       7.609  -2.093 -17.147  1.00 25.00           C
ATOM     47  CA  VAL    47       7.910  -1.215 -13.431  1.00 25.00           C
ATOM     48  CA  HIS    48       5.962   2.030 -14.014  1.00 25.00           C
ATOM     49  CA  LEU    49       3.232   0.086 -15.869  1.00 25.00           C
ATOM     50  CA  ALA    50       3.024  -2.423 -12.984  1.00 25.00           C
ATOM     51  CA  VAL    51       2.720   0.453 -10.472  1.00 25.00           C
ATOM     52  CA  LEU    52      -0.071   2.025 -12.572  1.00 25.00           C
ATOM     53  CA  LEU    53      -1.903  -1.335 -12.696  1.00 25.00           C
ATOM     54  CA  GLU    54      -1.581  -1.680  -8.895  1.00 25.00           C
ATOM     55  CA  ALA    55      -2.966   1.862  -8.433  1.00 25.00           C
ATOM     56  CA  ASP    56      -5.912   1.036 -10.735  1.00 25.00           C
ATOM     57  CA  LEU    57      -6.609  -2.157  -8.739  1.00 25.00           C
ATOM     58  CA  ARG    58      -6.526  -0.161  -5.471  1.00 25.00           C
ATOM     59  CA  ILE    59      -8.962   2.399  -6.944  1.00 25.00           C
ATOM     60  CA  ALA    60     -11.306  -0.424  -8.042  1.00 25.00           C
ATOM     61  CA  THR    61     -12.652  -3.943  -8.843  1.00 25.00           C
ATOM     62  CA  GLY    62     -10.565  -7.027  -9.774  1.00 25.00           C
ATOM     63  CA  ALA    63      -6.809  -6.866 -10.415  1.00 25.00           C
ATOM     64  CA  THR    64      -6.587  -9.785  -7.927  1.00 25.00           C
ATOM     65  CA  ALA    65      -2.859 -10.345  -8.435  1.00 25.00           C
ATOM     66  CA  ASP    66      -2.261 -13.824  -9.920  1.00 25.00           C
ATOM     67  CA  GLU    67      -1.452 -12.261 -13.321  1.00 25.00           C
ATOM     68  CA  MET    68       1.005  -9.843 -11.653  1.00 25.00           C
ATOM     69  CA  ALA    69       2.680 -12.765  -9.828  1.00 25.00           C
ATOM     70  CA  GLN    70       2.978 -14.686 -13.128  1.00 25.00           C
ATOM     71  CA  PHE    71       4.537 -11.615 -14.804  1.00 25.00           C
ATOM     72  CA  TYR    72       7.995 -11.567 -16.405  1.00 25.00           C
ATOM     73  CA  ALA    73       8.518 -15.119 -15.238  1.00 25.00           C
ATOM     74  CA  VAL    74       9.328 -13.787 -11.812  1.00 25.00           C
ATOM     75  CA  PRO    75      11.943 -16.530 -11.863  1.00 25.00           C
ATOM     76  CA  VAL    76      12.024 -18.161  -8.463  1.00 25.00           C
ATOM     77  CA  LEU    77       9.942 -16.179  -5.911  1.00 25.00           C
ATOM     78  CA  PRO    78       8.468 -13.193  -4.003  1.00 25.00           C
ATOM     79  CA  GLU    79      12.077 -12.099  -3.340  1.00 25.00           C
ATOM     80  CA  GLN    80      12.652 -11.630  -7.097  1.00 25.00           C
ATOM     81  CA  LEU    81       9.455  -9.536  -7.349  1.00 25.00           C
ATOM     82  CA  VAL    82      10.604  -7.383  -4.398  1.00 25.00           C
ATOM     83  CA  ASP    83      14.014  -6.875  -6.065  1.00 25.00           C
ATOM     84  CA  ARG    84      12.293  -5.855  -9.331  1.00 25.00           C
ATOM     85  CA  LEU    85      10.093  -3.368  -7.424  1.00 25.00           C
ATOM     86  CA  ASP    86      13.190  -1.900  -5.715  1.00 25.00           C
ATOM     87  CA  GLN    87      14.928  -1.548  -9.109  1.00 25.00           C
ATOM     88  CA  SER    88      11.838   0.213 -10.534  1.00 25.00           C
ATOM     89  CA  TRP    89      11.787   2.599  -7.539  1.00 25.00           C
ATOM     90  CA  GLN    90      15.506   3.359  -8.048  1.00 25.00           C
ATOM     91  CA  TYR    91      14.878   4.060 -11.761  1.00 25.00           C
ATOM     92  CA  TYR    92      11.990   6.406 -10.855  1.00 25.00           C
ATOM     93  CA  GLN    93      14.233   8.241  -8.351  1.00 25.00           C
ATOM     94  CA  ASP    94      16.955   8.608 -11.020  1.00 25.00           C
ATOM     95  CA  ARG    95      14.379   9.995 -13.491  1.00 25.00           C
ATOM     96  CA  LEU    96      13.164  12.497 -10.858  1.00 25.00           C
ATOM     97  CA  MET    97      16.774  13.590 -10.196  1.00 25.00           C
ATOM     98  CA  ALA    98      17.348  14.059 -13.952  1.00 25.00           C
ATOM     99  CA  ASP    99      14.152  16.153 -14.204  1.00 25.00           C
ATOM    100  CA  PHE   100      15.841  18.448 -11.685  1.00 25.00           C
ATOM    101  CA  SER   101      18.769  20.191 -13.438  1.00 25.00           C
ATOM    102  CA  THR   102      22.445  19.496 -14.165  1.00 25.00           C
ATOM    103  CA  GLU   103      23.091  20.797 -17.651  1.00 25.00           C
ATOM    104  CA  THR   104      20.419  21.350 -20.372  1.00 25.00           C
ATOM    105  CA  THR   105      19.774  25.085 -20.614  1.00 25.00           C
ATOM    106  CA  TYR   106      17.154  26.619 -18.316  1.00 25.00           C
ATOM    107  CA  TRP   107      13.347  26.195 -18.755  1.00 25.00           C
ATOM    108  CA  GLY   108       9.884  24.925 -17.800  1.00 25.00           C
ATOM    109  CA  VAL   109       8.536  21.658 -16.439  1.00 25.00           C
ATOM    110  CA  THR   110       9.641  22.403 -12.891  1.00 25.00           C
ATOM    111  CA  ASP   111       5.994  21.695 -12.129  1.00 25.00           C
ATOM    112  CA  SER   112       5.417  18.809  -9.756  1.00 25.00           C
ATOM    113  CA  THR   113       8.889  17.275 -10.121  1.00 25.00           C
ATOM    114  CA  THR   114      10.134  16.105  -6.693  1.00 25.00           C
ATOM    115  CA  GLY   115       6.523  15.511  -5.558  1.00 25.00           C
ATOM    116  CA  TRP   116       5.829  13.497  -8.741  1.00 25.00           C
ATOM    117  CA  LEU   117       8.975  11.401  -8.132  1.00 25.00           C
ATOM    118  CA  LEU   118       7.873  10.752  -4.522  1.00 25.00           C
ATOM    119  CA  GLU   119       4.405   9.685  -5.746  1.00 25.00           C
ATOM    120  CA  ALA   120       6.007   7.313  -8.292  1.00 25.00           C
ATOM    121  CA  ALA   121       8.214   5.815  -5.545  1.00 25.00           C
ATOM    122  CA  VAL   122       5.140   5.316  -3.314  1.00 25.00           C
ATOM    123  CA  HIS   123       3.296   3.598  -6.197  1.00 25.00           C
ATOM    124  CA  LEU   124       6.305   1.304  -6.787  1.00 25.00           C
ATOM    125  CA  TYR   125       6.401   0.428  -3.060  1.00 25.00           C
ATOM    126  CA  HIS   126       2.654  -0.364  -3.125  1.00 25.00           C
ATOM    127  CA  HIS   127       3.155  -2.603  -6.190  1.00 25.00           C
ATOM    128  CA  ARG   128       6.023  -4.424  -4.422  1.00 25.00           C
ATOM    129  CA  SER   129       3.821  -4.942  -1.332  1.00 25.00           C
ATOM    130  CA  GLN   130       1.014  -6.332  -3.535  1.00 25.00           C
ATOM    131  CA  LEU   131       3.487  -8.721  -5.221  1.00 25.00           C
ATOM    132  CA  LEU   132       4.730  -9.892  -1.793  1.00 25.00           C
ATOM    133  CA  ASP   133       1.121 -10.485  -0.659  1.00 25.00           C
ATOM    134  CA  TYR   134       0.426 -12.499  -3.841  1.00 25.00           C
ATOM    135  CA  LEU   135       3.572 -14.596  -3.232  1.00 25.00           C
ATOM    136  CA  ASN   136       2.470 -15.244   0.379  1.00 25.00           C
ATOM    137  CA  LEU   137      -0.998 -16.313  -0.846  1.00 25.00           C
ATOM    138  CA  LEU   138       0.604 -18.683  -3.392  1.00 25.00           C
ATOM    139  CA  GLY   139      -1.727 -18.580  -6.362  1.00 25.00           C
ATOM    140  CA  TYR   140      -4.580 -20.975  -5.379  1.00 25.00           C
ATOM    141  CA  ASP   141      -4.886 -24.592  -4.286  1.00 25.00           C
ATOM    142  CA  ILE   142      -5.197 -28.255  -5.401  1.00 25.00           C
ATOM    143  CA  LYS   143      -4.768 -28.860  -9.173  1.00 25.00           C
ATOM    144  CA  LEU   144      -5.655 -26.312 -11.808  1.00 25.00           C
ATOM    145  CA  ASP   145      -5.208 -27.913 -15.261  1.00 25.00           C
ATOM    146  CA  LEU   146      -3.342 -25.480 -17.456  1.00 25.00           C
ATOM    147  CA  PHE   147      -4.850 -22.067 -16.817  1.00 25.00           C
ATOM    148  CA  GLU   148      -3.943 -18.864 -18.605  1.00 25.00           C
TER
END
