
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  144 (  144),  selected  144 , name T0370TS168_5-D1
# Molecule2: number of CA atoms  144 ( 1104),  selected  144 , name T0370_D1.pdb
# PARAMETERS: T0370TS168_5-D1.T0370_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         8 - 30          4.61    18.33
  LONGEST_CONTINUOUS_SEGMENT:    23         9 - 31          4.87    18.43
  LCS_AVERAGE:     13.79

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17         8 - 24          1.91    25.80
  LCS_AVERAGE:      5.73

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         8 - 22          0.48    27.34
  LCS_AVERAGE:      3.54

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     T       8     T       8     15   17   23     8   14   15   15   16   16   17   17   18   20   23   29   30   31   32   39   40   42   46   52 
LCS_GDT     A       9     A       9     15   17   23    13   14   15   15   16   16   17   17   18   20   23   29   30   31   32   39   40   47   53   56 
LCS_GDT     K      10     K      10     15   17   23    13   14   15   15   16   16   17   17   18   19   23   29   30   31   32   39   40   47   53   56 
LCS_GDT     Q      11     Q      11     15   17   23    13   14   15   15   16   16   17   17   18   20   23   29   30   31   33   39   44   49   53   56 
LCS_GDT     R      12     R      12     15   17   23    13   14   15   15   16   16   17   17   18   20   23   29   30   31   35   39   44   49   53   56 
LCS_GDT     I      13     I      13     15   17   23    13   14   15   15   16   16   17   17   18   20   23   29   30   31   35   39   44   49   53   57 
LCS_GDT     Q      14     Q      14     15   17   23    13   14   15   15   16   16   17   17   18   20   23   29   30   31   35   39   44   49   53   56 
LCS_GDT     D      15     D      15     15   17   23    13   14   15   15   16   16   17   17   18   20   23   29   30   31   35   39   44   49   53   57 
LCS_GDT     T      16     T      16     15   17   23    13   14   15   15   16   16   17   17   18   20   23   29   30   35   40   42   46   50   53   57 
LCS_GDT     L      17     L      17     15   17   23    13   14   15   15   16   16   17   17   18   19   22   24   28   39   41   43   46   50   53   57 
LCS_GDT     N      18     N      18     15   17   23    13   14   15   15   16   16   17   17   18   19   23   29   30   33   39   43   46   50   53   57 
LCS_GDT     R      19     R      19     15   17   23    13   14   15   15   16   16   17   17   18   19   25   29   35   39   41   43   46   50   53   57 
LCS_GDT     L      20     L      20     15   17   23    13   14   15   15   16   16   17   17   18   20   26   29   35   39   41   43   46   50   53   57 
LCS_GDT     E      21     E      21     15   17   23    13   14   15   15   16   16   17   17   18   19   21   23   35   39   41   43   46   50   52   56 
LCS_GDT     L      22     L      22     15   17   23     4   14   15   15   16   16   17   17   18   19   22   29   35   39   41   43   46   50   52   57 
LCS_GDT     D      23     D      23      4   17   23     3    4    5   12   16   16   17   17   18   19   23   29   35   39   41   43   46   50   52   57 
LCS_GDT     V      24     V      24      4   17   23     3    4    4    8   12   14   15   17   18   20   23   29   30   32   41   42   45   50   52   56 
LCS_GDT     D      25     D      25      3    6   23     0    3    4    5    6    9   10   13   16   20   25   29   35   39   41   43   46   50   53   57 
LCS_GDT     A      26     A      26      3    6   23     3    3    3    4    6    7   10   13   14   18   22   29   35   39   41   43   46   50   53   57 
LCS_GDT     W      27     W      27      3    3   23     3    3    4    6    6    9   11   18   20   20   26   29   35   39   41   43   46   51   54   59 
LCS_GDT     V      28     V      28      3    5   23     4    5    6    9   12   15   17   18   20   23   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     S      29     S      29      3    5   23     2    3    5    9   12   14   17   18   20   23   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     T      30     T      30      3    5   23     0    4    5    8   12   15   17   18   20   23   26   27   31   35   40   44   46   51   54   59 
LCS_GDT     A      31     A      31      3    5   23     3    3    6    8   11   15   17   18   20   23   26   27   31   35   40   44   45   51   54   59 
LCS_GDT     G      32     G      32      3    5   19     3    5    6    9   11   13   15   17   19   20   21   23   26   28   36   39   44   49   53   59 
LCS_GDT     A      33     A      33      3    4   19     3    3    6    9   11   13   14   16   18   20   21   22   26   27   33   36   44   49   53   54 
LCS_GDT     D      34     D      34      3    4   19     3    3    3    4    5    7    9   12   13   20   21   23   27   34   37   40   45   51   54   59 
LCS_GDT     G      35     G      35      3    5   19     3    3    4    4    5    7    9   12   15   19   23   27   31   35   40   44   45   51   54   59 
LCS_GDT     G      36     G      36      3    5   19     3    3    4    4    5   10   10   12   12   16   19   26   30   35   39   44   45   51   54   59 
LCS_GDT     A      37     A      37      3    5   19     3    3    3    4    5    7   10   12   12   15   18   22   26   27   34   38   45   48   54   59 
LCS_GDT     P      38     P      38      3    5   19     4    4    4    5    5    9   10   12   12   14   18   20   29   34   37   39   45   49   54   59 
LCS_GDT     Y      39     Y      39      3    5   21     4    4    4    5    5    7    9   12   13   20   21   25   28   31   35   39   42   46   51   56 
LCS_GDT     L      40     L      40      3    6   21     4    4    4    5    8   10   11   13   17   19   22   23   28   33   36   39   42   46   52   55 
LCS_GDT     V      41     V      41      3    6   21     3    3    4    5    5    7   10   13   14   17   20   22   26   27   31   33   38   38   46   48 
LCS_GDT     P      42     P      42      3    6   21     3    3    4    5    8   10   11   13   16   18   20   23   26   32   35   38   42   46   49   52 
LCS_GDT     L      43     L      43      3    6   21     3    3    4    5    9   11   15   16   19   21   23   31   33   34   36   40   43   47   50   59 
LCS_GDT     S      44     S      44      3    6   21     1    3    4    5    9   11   15   16   19   23   25   31   33   34   37   44   45   51   54   59 
LCS_GDT     Y      45     Y      45      4    6   21     3    4    5   10   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     L      46     L      46      4   12   21     3    4    5   10   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     W      47     W      47      4   12   22     3    4    7   10   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     D      48     D      48      4   12   22     3    4    7    9   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     G      49     G      49      4   12   22     3    5    7    9   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     E      50     E      50      4   12   22     3    4    6    7   11   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     T      51     T      51      4   12   22     3    5    6    9   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     F      52     F      52      5   12   22     3    4    6   10   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     L      53     L      53      5   12   22     4    5    6   10   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     V      54     V      54      5   12   22     4    5    6   10   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     A      55     A      55      5   12   22     4    5    6   10   12   15   17   18   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     T      56     T      56      5   12   22     3    3    6   10   12   13   17   17   20   23   26   31   33   35   40   44   46   51   54   59 
LCS_GDT     P      57     P      57      5   12   22     3    3    6   10   11   13   16   17   20   20   23   28   33   35   39   44   45   51   54   59 
LCS_GDT     A      58     A      58      5    7   22     3    4    5    5    7    8   11   16   19   20   23   28   30   34   37   40   44   48   54   59 
LCS_GDT     A      59     A      59      5    6   22     3    4    5    8   12   15   17   17   20   23   26   28   33   35   39   44   45   51   54   59 
LCS_GDT     S      60     S      60      5    6   22     3    4    5    5    6    8   11   13   17   18   22   27   30   35   39   44   45   51   54   59 
LCS_GDT     P      61     P      61      5    6   22     3    4    5    5    6    8    9   11   12   17   20   21   23   26   31   35   39   45   51   55 
LCS_GDT     T      62     T      62      5    6   22     3    4    5    5    6    6    8    9   11   13   13   15   16   21   24   30   34   37   42   44 
LCS_GDT     G      63     G      63      4    6   22     3    4    4    5    6    6    7   11   12   15   18   20   24   25   27   32   34   38   42   48 
LCS_GDT     R      64     R      64      4    6   22     3    4    4    5    5    8    9   13   14   17   20   21   24   25   29   32   34   38   44   50 
LCS_GDT     N      65     N      65      4    6   22     3    4    4    5    6    8    9   13   14   17   20   21   24   25   29   32   34   38   42   45 
LCS_GDT     L      66     L      66      3    6   22     3    3    4    5    5    8    9   13   14   17   20   21   24   25   29   32   34   39   44   50 
LCS_GDT     S      67     S      67      3    6   22     3    3    4    7    7    9   10   13   13   17   20   21   23   25   29   31   35   42   46   50 
LCS_GDT     E      68     E      68      4    6   22     3    3    4    7    7    9   10   13   14   17   20   23   25   25   29   32   35   42   46   50 
LCS_GDT     T      69     T      69      4    6   22     3    3    4    7    7    9   10   13   14   17   20   23   25   25   28   32   35   42   46   50 
LCS_GDT     G      70     G      70      4    6   22     3    3    5    6    6    7    9   10   14   17   20   23   25   25   31   33   35   42   46   50 
LCS_GDT     R      71     R      71      4    8   21     3    3    5    7    9   11   12   13   14   16   19   23   26   27   31   34   35   42   46   50 
LCS_GDT     V      72     V      72      4    8   21     3    3    5    7    9   11   12   13   14   17   20   23   27   32   36   39   44   49   54   59 
LCS_GDT     R      73     R      73      4    8   21     3    4    6    8    9   11   12   14   17   20   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     L      74     L      74      4    8   21     3    4    5    8    9   11   12   14   19   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     G      75     G      75      4    8   21     3    4    6    8    9   11   12   13   14   17   20   23   26   31   36   42   44   48   52   56 
LCS_GDT     I      76     I      76      4    8   21     3    3    6    8    9   11   12   13   14   17   20   23   26   29   33   39   42   45   46   50 
LCS_GDT     G      77     G      77      4    8   21     3    4    6    8    9   11   12   13   14   16   19   23   25   29   31   33   35   42   46   50 
LCS_GDT     P      78     P      78      4    8   21     3    4    4    7    9   11   12   13   14   16   19   23   25   29   31   33   35   37   42   46 
LCS_GDT     T      79     T      79      4    5   21     3    4    4    4    6    9   10   13   14   16   18   23   25   25   29   31   34   37   42   44 
LCS_GDT     R      80     R      80      4    4   16     3    4    4    4    4    4    5    7   10   11   13   16   18   23   26   27   32   37   42   44 
LCS_GDT     D      81     D      81      3    6   16     3    3    4    5    6    6    6    8   10   11   12   16   17   21   21   30   31   36   42   44 
LCS_GDT     L      82     L      82      4    6   16     3    4    5    5    6    6    6    7   10   11   13   16   17   21   22   30   33   40   46   50 
LCS_GDT     V      83     V      83      4    6   20     3    4    5    5    6    6    7   11   12   13   14   17   23   25   26   30   34   37   46   50 
LCS_GDT     L      84     L      84      4    6   20     3    4    5    7    9   11   12   13   14   17   20   23   26   27   31   33   35   37   40   42 
LCS_GDT     V      85     V      85      4    6   21     4    4    5    5    7    9   12   13   16   18   20   23   26   27   31   33   36   39   42   46 
LCS_GDT     E      86     E      86      3    6   21     2    4    5    5    6    7    9   13   15   18   19   23   25   27   31   33   36   39   41   47 
LCS_GDT     G      87     G      87      3    6   21     0    3    3    4    6    8   11   15   16   18   22   23   27   31   37   42   44   47   53   57 
LCS_GDT     T      88     T      88      3    6   21     0    3    3    4    9   13   15   16   16   21   25   31   33   34   37   42   44   50   53   57 
LCS_GDT     A      89     A      89      3    6   21     3    3    4    7   10   13   15   16   19   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     L      90     L      90      4    6   21     3    4    7    9   11   14   17   18   20   23   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     P      91     P      91      4    6   21     3    3    4    5    6   10   13   16   17   20   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     L      92     L      92      4   10   21     3    3    7    8   10   10   13   16   17   20   23   29   30   35   40   42   44   51   54   59 
LCS_GDT     E      93     E      93      4   10   21     3    3    7    8   10   10   11   15   16   18   20   23   26   30   35   39   44   49   53   56 
LCS_GDT     P      94     P      94      4   10   21     3    3    5    6   10   10   11   15   16   18   19   21   24   29   35   39   43   47   53   54 
LCS_GDT     A      95     A      95      5   10   21     3    6    6    8   10   10   11   15   16   18   20   29   30   31   35   39   44   49   53   55 
LCS_GDT     G      96     G      96      5   10   21     3    6    7    8   10   10   13   16   17   20   23   29   30   31   33   39   44   49   53   56 
LCS_GDT     L      97     L      97      5   10   21     3    6    7    8   10   10   13   16   17   20   23   29   30   31   32   39   44   49   53   55 
LCS_GDT     P      98     P      98      5   10   21     3    6    7    8   10   10   11   15   16   18   19   21   23   25   29   31   33   38   43   49 
LCS_GDT     D      99     D      99      5   10   21     3    6    7    8   10   10   11   15   16   18   19   20   23   25   29   31   33   37   43   48 
LCS_GDT     G     100     G     100      4   10   21     3    4    4    6   10   10   11   15   16   18   19   20   22   25   27   29   31   35   40   48 
LCS_GDT     V     101     V     101      4   10   21     3    6    7    8   10   10   11   15   16   18   19   21   25   27   29   31   37   38   46   50 
LCS_GDT     G     102     G     102      4    8   21     3    4    5    8    9   10   13   16   17   20   23   29   30   31   32   39   40   42   46   52 
LCS_GDT     D     103     D     103      3    4   21     3    3    4    4    6    9   13   16   17   18   21   29   30   31   32   34   37   42   46   52 
LCS_GDT     T     104     T     104      3    4   21     3    3    5    8    9   10   13   16   17   20   23   29   30   31   32   39   40   42   46   52 
LCS_GDT     F     105     F     105      3    4   21     0    3    5    8    9   10   10   12   15   20   23   29   30   31   32   39   44   49   53   56 
LCS_GDT     A     106     A     106      3    4   20     0    3    4    5    5    9   10   12   14   17   20   23   25   30   35   39   44   49   53   56 
LCS_GDT     E     107     E     107      4    6   20     3    4    5    6    6    7    8   12   14   16   20   23   24   29   35   39   44   49   53   56 
LCS_GDT     K     108     K     108      4    6   20     3    4    5    6    6    6    7    8   12   15   16   21   24   28   33   39   44   49   53   56 
LCS_GDT     T     109     T     109      4    6   20     3    4    5    6    6    8   10   13   14   16   19   21   24   29   33   36   38   46   48   50 
LCS_GDT     G     110     G     110      4    6   20     3    4    5    6    6    8    9   11   14   16   19   21   24   29   35   39   44   49   53   55 
LCS_GDT     F     111     F     111      4    6   20     3    4    5    6    6    7    9   13   14   16   21   22   25   33   36   39   45   49   53   56 
LCS_GDT     D     112     D     112      4    6   18     3    3    5    6    6    8   10   13   13   16   21   24   28   35   40   43   46   50   53   57 
LCS_GDT     P     113     P     113      3    5   18     3    3    4    4    6    8    9   12   12   20   26   29   35   39   41   43   46   51   54   59 
LCS_GDT     R     114     R     114      3    5   18     3    4    7    9   11   14   17   18   20   23   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     R     115     R     115      3    5   18     3    3    7    9   11   14   17   18   20   23   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     L     116     L     116      4    4   18     3    4    7    9   11   14   17   18   20   23   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     T     117     T     117      4    5   18     3    4    4    4    6    8   11   12   14   16   19   20   26   32   39   44   45   51   54   59 
LCS_GDT     T     118     T     118      4    5   18     3    4    4    4    6    7    9   12   12   14   17   20   26   29   33   42   45   51   54   59 
LCS_GDT     S     119     S     119      4    9   18     3    4    4    6    7    9   11   13   15   17   22   31   33   35   39   44   45   51   54   59 
LCS_GDT     Y     120     Y     120      3    9   18     3    5    6    7    8   10   10   13   19   23   25   31   33   35   39   44   45   51   54   59 
LCS_GDT     L     121     L     121      3    9   18     3    3    4    6    8   10   11   13   15   17   20   31   33   33   36   40   43   49   54   59 
LCS_GDT     Y     122     Y     122      6    9   18     3    5    6    7    8   11   13   16   19   23   26   31   33   39   41   44   46   51   54   59 
LCS_GDT     F     123     F     123      6    9   18     3    5    6    7    8   11   13   16   19   23   25   31   35   39   41   44   46   51   54   59 
LCS_GDT     R     124     R     124      6    9   18     3    5    6    7    8   11   13   16   19   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     I     125     I     125      6    9   18     3    5    6    7    8   11   13   16   19   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     S     126     S     126      6    9   18     3    5    6    7    8   11   13   16   19   23   25   31   33   39   41   44   46   51   54   59 
LCS_GDT     P     127     P     127      6    9   18     3    5    6    7    8   13   14   16   19   23   25   31   33   35   39   44   45   51   54   59 
LCS_GDT     R     128     R     128      3    9   18     3    3    5   10   11   12   14   16   19   23   26   31   33   35   39   44   45   51   54   59 
LCS_GDT     R     129     R     129      3    4   18     3    3    4    4    4    6   10   14   19   23   25   31   33   34   39   44   45   51   54   59 
LCS_GDT     V     130     V     130      3    4   18     0    3    4    4    4    6    7   13   18   22   25   31   33   34   37   44   45   51   54   59 
LCS_GDT     Q     131     Q     131      3    3   16     0    3    3    3    4    7   11   15   18   20   25   31   33   34   37   40   43   51   53   59 
LCS_GDT     A     132     A     132      3    3   16     0    3    3    5    6    8   10   12   15   20   24   31   33   33   36   40   43   46   50   54 
LCS_GDT     W     133     W     133      3    4   15     0    3    3    4    4    4    6    9   11   14   18   20   24   28   31   39   42   45   47   53 
LCS_GDT     R     134     R     134      3    8   14     1    3    3    5    5    6    9   10   11   14   17   20   24   28   30   33   41   45   50   53 
LCS_GDT     E     135     E     135      6    9   14     4    5    7    8    9    9    9   10   10   11   14   18   24   26   29   33   36   41   47   51 
LCS_GDT     A     136     A     136      6    9   14     4    5    7    8    9    9    9   10   10   10   12   15   17   22   25   28   36   39   44   48 
LCS_GDT     N     137     N     137      6    9   14     4    5    7    8    9    9    9   10   10   10   12   14   17   22   25   28   30   34   42   45 
LCS_GDT     E     138     E     138      6    9   14     4    5    7    8    9    9    9   10   12   17   19   23   27   31   36   39   44   51   53   59 
LCS_GDT     L     139     L     139      6    9   14     4    5    7    8    9    9    9   10   17   18   20   27   30   32   37   44   45   51   54   59 
LCS_GDT     S     140     S     140      6    9   14     4    5    7    8    9    9    9   10   10   12   15   17   21   26   39   42   45   50   53   57 
LCS_GDT     G     141     G     141      5    9   14     3    5    5    8    9    9    9   12   17   20   26   29   35   39   41   43   46   50   53   59 
LCS_GDT     R     142     R     142      5    9   14     4    5    7    9   12   15   17   18   20   23   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     E     143     E     143      3    9   14     3    3    4    6    9   13   17   18   20   23   26   29   35   39   41   43   46   50   53   56 
LCS_GDT     L     144     L     144      3    7   14     3    3    4    4    6    8   10   13   13   18   20   20   35   39   41   43   46   49   52   55 
LCS_GDT     M     145     M     145      3    5   14     3    3    4    4    6    8    9   10   12   18   20   20   24   32   36   39   46   49   52   55 
LCS_GDT     R     146     R     146      3    5   14     3    3    4    5    5    7   11   11   12   15   17   20   24   29   31   36   38   42   48   53 
LCS_GDT     D     147     D     147      3    5   14     3    3    4    5    6    7    7    9   11   14   17   18   24   25   29   34   35   42   46   50 
LCS_GDT     G     148     G     148      4    5   14     3    4    4    5    6    7    7   10   13   15   18   20   24   29   31   34   35   42   46   50 
LCS_GDT     E     149     E     149      4    5   14     3    4    4    5    6    7    7    8   11   14   18   20   23   29   31   33   35   42   46   50 
LCS_GDT     W     150     W     150      4    5   14     3    4    4    5    7   10   10   12   13   14   17   18   23   29   31   33   35   38   44   47 
LCS_GDT     L     151     L     151      4    5   14     3    4    4    4    5    5    5    7    9   12   17   17   18   20   21   30   33   37   39   43 
LCS_AVERAGE  LCS_A:   7.69  (   3.54    5.73   13.79 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     14     15     15     16     16     17     18     20     23     26     31     35     39     41     44     46     51     54     59 
GDT PERCENT_CA   9.03   9.72  10.42  10.42  11.11  11.11  11.81  12.50  13.89  15.97  18.06  21.53  24.31  27.08  28.47  30.56  31.94  35.42  37.50  40.97
GDT RMS_LOCAL    0.23   0.35   0.48   0.48   1.14   1.14   1.61   2.70   2.94   3.31   3.86   4.41   4.82   5.07   5.23   5.68   5.78   6.30   6.47   7.97
GDT RMS_ALL_CA  27.11  27.42  27.34  27.34  26.93  26.93  26.30  15.35  15.37  15.34  15.43  18.24  15.63  15.69  15.69  15.90  15.44  15.78  15.88  15.78

#      Molecule1      Molecule2       DISTANCE
LGA    T       8      T       8         31.548
LGA    A       9      A       9         26.971
LGA    K      10      K      10         25.272
LGA    Q      11      Q      11         25.218
LGA    R      12      R      12         21.335
LGA    I      13      I      13         17.409
LGA    Q      14      Q      14         18.135
LGA    D      15      D      15         16.528
LGA    T      16      T      16         11.959
LGA    L      17      L      17         10.840
LGA    N      18      N      18         13.015
LGA    R      19      R      19          8.792
LGA    L      20      L      20          6.927
LGA    E      21      E      21         11.209
LGA    L      22      L      22         11.756
LGA    D      23      D      23         10.556
LGA    V      24      V      24         11.630
LGA    D      25      D      25          8.320
LGA    A      26      A      26          9.175
LGA    W      27      W      27          4.674
LGA    V      28      V      28          3.671
LGA    S      29      S      29          1.007
LGA    T      30      T      30          6.961
LGA    A      31      A      31          7.147
LGA    G      32      G      32         13.385
LGA    A      33      A      33         16.303
LGA    D      34      D      34         12.819
LGA    G      35      G      35         10.393
LGA    G      36      G      36         10.127
LGA    A      37      A      37         12.172
LGA    P      38      P      38         12.772
LGA    Y      39      Y      39         14.464
LGA    L      40      L      40         14.819
LGA    V      41      V      41         16.303
LGA    P      42      P      42         14.169
LGA    L      43      L      43         11.359
LGA    S      44      S      44          8.735
LGA    Y      45      Y      45          3.143
LGA    L      46      L      46          1.675
LGA    W      47      W      47          2.961
LGA    D      48      D      48          2.843
LGA    G      49      G      49          2.464
LGA    E      50      E      50          3.549
LGA    T      51      T      51          2.074
LGA    F      52      F      52          2.104
LGA    L      53      L      53          2.497
LGA    V      54      V      54          3.147
LGA    A      55      A      55          4.570
LGA    T      56      T      56          6.558
LGA    P      57      P      57          9.338
LGA    A      58      A      58         12.507
LGA    A      59      A      59          8.638
LGA    S      60      S      60          8.594
LGA    P      61      P      61         11.969
LGA    T      62      T      62         16.770
LGA    G      63      G      63         18.233
LGA    R      64      R      64         20.221
LGA    N      65      N      65         20.592
LGA    L      66      L      66         17.965
LGA    S      67      S      67         21.748
LGA    E      68      E      68         26.162
LGA    T      69      T      69         23.150
LGA    G      70      G      70         18.698
LGA    R      71      R      71         16.493
LGA    V      72      V      72          9.483
LGA    R      73      R      73          5.501
LGA    L      74      L      74          5.597
LGA    G      75      G      75         12.187
LGA    I      76      I      76         16.466
LGA    G      77      G      77         22.684
LGA    P      78      P      78         27.761
LGA    T      79      T      79         28.877
LGA    R      80      R      80         27.539
LGA    D      81      D      81         23.677
LGA    L      82      L      82         18.083
LGA    V      83      V      83         17.441
LGA    L      84      L      84         17.274
LGA    V      85      V      85         16.998
LGA    E      86      E      86         19.090
LGA    G      87      G      87         12.761
LGA    T      88      T      88         12.149
LGA    A      89      A      89          5.650
LGA    L      90      L      90          2.353
LGA    P      91      P      91          6.176
LGA    L      92      L      92          8.648
LGA    E      93      E      93         12.021
LGA    P      94      P      94         18.849
LGA    A      95      A      95         20.376
LGA    G      96      G      96         17.283
LGA    L      97      L      97         18.653
LGA    P      98      P      98         24.779
LGA    D      99      D      99         31.133
LGA    G     100      G     100         30.319
LGA    V     101      V     101         25.197
LGA    G     102      G     102         21.620
LGA    D     103      D     103         26.850
LGA    T     104      T     104         23.548
LGA    F     105      F     105         16.516
LGA    A     106      A     106         14.699
LGA    E     107      E     107         18.124
LGA    K     108      K     108         18.663
LGA    T     109      T     109         20.341
LGA    G     110      G     110         20.745
LGA    F     111      F     111         14.172
LGA    D     112      D     112         10.869
LGA    P     113      P     113          6.788
LGA    R     114      R     114          2.273
LGA    R     115      R     115          2.464
LGA    L     116      L     116          2.301
LGA    T     117      T     117          8.312
LGA    T     118      T     118          8.975
LGA    S     119      S     119          9.764
LGA    Y     120      Y     120          9.905
LGA    L     121      L     121         11.131
LGA    Y     122      Y     122          6.884
LGA    F     123      F     123          7.373
LGA    R     124      R     124          6.207
LGA    I     125      I     125          6.968
LGA    S     126      S     126          8.289
LGA    P     127      P     127          9.831
LGA    R     128      R     128          8.691
LGA    R     129      R     129         10.618
LGA    V     130      V     130         11.457
LGA    Q     131      Q     131         14.315
LGA    A     132      A     132         15.106
LGA    W     133      W     133         16.249
LGA    R     134      R     134         18.701
LGA    E     135      E     135         21.524
LGA    A     136      A     136         19.349
LGA    N     137      N     137         17.978
LGA    E     138      E     138         13.263
LGA    L     139      L     139         10.969
LGA    S     140      S     140          9.996
LGA    G     141      G     141          5.939
LGA    R     142      R     142          3.069
LGA    E     143      E     143          3.996
LGA    L     144      L     144          8.372
LGA    M     145      M     145         11.130
LGA    R     146      R     146         16.903
LGA    D     147      D     147         21.714
LGA    G     148      G     148         20.933
LGA    E     149      E     149         19.669
LGA    W     150      W     150         19.383
LGA    L     151      L     151         19.112

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  144  144    4.0     18    2.70    15.799    12.805     0.643

LGA_LOCAL      RMSD =  2.697  Number of atoms =   18  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 15.346  Number of atoms =  144 
Std_ALL_ATOMS  RMSD = 14.097  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.144413 * X  +  -0.296820 * Y  +   0.943951 * Z  +   2.017934
  Y_new =   0.057924 * X  +  -0.949779 * Y  +  -0.307514 * Z  +  32.317474
  Z_new =   0.987821 * X  +   0.099087 * Y  +  -0.119968 * Z  +  17.546934 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.451231   -0.690361  [ DEG:   140.4452    -39.5548 ]
  Theta =  -1.414565   -1.727028  [ DEG:   -81.0486    -98.9514 ]
  Phi   =   0.381454   -2.760139  [ DEG:    21.8557   -158.1443 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS168_5-D1                               
REMARK     2: T0370_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0370TS168_5-D1.T0370_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  144  144   4.0   18   2.70  12.805    14.10
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS168_5-D1
PFRMAT TS
TARGET T0370
MODEL 5
PARENT N/A
ATOM      8  CA  THR     8       5.688  52.756  23.961  1.00 25.00           C
ATOM      9  CA  ALA     9       7.624  49.715  25.254  1.00 25.00           C
ATOM     10  CA  LYS    10       4.696  47.426  24.327  1.00 25.00           C
ATOM     11  CA  GLN    11       4.578  48.957  20.818  1.00 25.00           C
ATOM     12  CA  ARG    12       8.347  48.409  20.425  1.00 25.00           C
ATOM     13  CA  ILE    13       7.957  44.763  21.532  1.00 25.00           C
ATOM     14  CA  GLN    14       5.123  44.273  19.003  1.00 25.00           C
ATOM     15  CA  ASP    15       7.299  45.783  16.235  1.00 25.00           C
ATOM     16  CA  THR    16      10.177  43.444  17.188  1.00 25.00           C
ATOM     17  CA  LEU    17       7.803  40.441  17.085  1.00 25.00           C
ATOM     18  CA  ASN    18       6.550  41.518  13.631  1.00 25.00           C
ATOM     19  CA  ARG    19      10.159  41.842  12.395  1.00 25.00           C
ATOM     20  CA  LEU    20      10.960  38.347  13.741  1.00 25.00           C
ATOM     21  CA  GLU    21       7.872  36.932  11.971  1.00 25.00           C
ATOM     22  CA  LEU    22       7.463  38.907   8.737  1.00 25.00           C
ATOM     23  CA  ASP    23       8.758  35.883   6.822  1.00 25.00           C
ATOM     24  CA  VAL    24       5.828  33.516   6.475  1.00 25.00           C
ATOM     25  CA  ASP    25       3.203  31.552   8.455  1.00 25.00           C
ATOM     26  CA  ALA    26       3.772  28.493   6.223  1.00 25.00           C
ATOM     27  CA  TRP    27       7.554  28.775   6.759  1.00 25.00           C
ATOM     28  CA  VAL    28       7.026  28.992  10.546  1.00 25.00           C
ATOM     29  CA  SER    29       4.782  25.891  10.436  1.00 25.00           C
ATOM     30  CA  THR    30       7.443  24.006   8.429  1.00 25.00           C
ATOM     31  CA  ALA    31       4.664  23.687   5.830  1.00 25.00           C
ATOM     32  CA  GLY    32       7.583  23.050   3.500  1.00 25.00           C
ATOM     33  CA  ALA    33       9.574  20.500   5.531  1.00 25.00           C
ATOM     34  CA  ASP    34       6.190  18.955   6.531  1.00 25.00           C
ATOM     35  CA  GLY    35       7.719  17.041   9.487  1.00 25.00           C
ATOM     36  CA  GLY    36       5.744  19.057  12.053  1.00 25.00           C
ATOM     37  CA  ALA    37       4.883  22.084  14.257  1.00 25.00           C
ATOM     38  CA  PRO    38       7.848  23.762  15.949  1.00 25.00           C
ATOM     39  CA  TYR    39       5.807  23.043  19.087  1.00 25.00           C
ATOM     40  CA  LEU    40       2.190  22.753  20.129  1.00 25.00           C
ATOM     41  CA  VAL    41       2.665  25.931  22.087  1.00 25.00           C
ATOM     42  CA  PRO    42       5.665  28.061  21.179  1.00 25.00           C
ATOM     43  CA  LEU    43       7.448  28.422  17.876  1.00 25.00           C
ATOM     44  CA  SER    44       5.691  31.730  18.734  1.00 25.00           C
ATOM     45  CA  TYR    45       5.112  35.518  18.962  1.00 25.00           C
ATOM     46  CA  LEU    46       3.411  36.642  22.174  1.00 25.00           C
ATOM     47  CA  TRP    47       4.643  38.479  25.302  1.00 25.00           C
ATOM     48  CA  ASP    48       4.205  38.599  29.086  1.00 25.00           C
ATOM     49  CA  GLY    49       6.941  36.031  29.513  1.00 25.00           C
ATOM     50  CA  GLU    50       7.658  34.365  26.112  1.00 25.00           C
ATOM     51  CA  THR    51       5.187  32.266  24.134  1.00 25.00           C
ATOM     52  CA  PHE    52       1.845  31.470  22.492  1.00 25.00           C
ATOM     53  CA  LEU    53       0.595  33.345  19.364  1.00 25.00           C
ATOM     54  CA  VAL    54       0.490  33.723  15.573  1.00 25.00           C
ATOM     55  CA  ALA    55      -2.344  34.169  13.103  1.00 25.00           C
ATOM     56  CA  THR    56      -1.105  31.376  10.860  1.00 25.00           C
ATOM     57  CA  PRO    57      -2.746  30.821   7.487  1.00 25.00           C
ATOM     58  CA  ALA    58      -4.185  30.677   3.994  1.00 25.00           C
ATOM     59  CA  ALA    59      -7.962  30.965   3.552  1.00 25.00           C
ATOM     60  CA  SER    60      -7.379  34.399   2.094  1.00 25.00           C
ATOM     61  CA  PRO    61      -9.992  34.106  -0.721  1.00 25.00           C
ATOM     62  CA  THR    62      -8.241  36.933  -2.542  1.00 25.00           C
ATOM     63  CA  GLY    63      -4.504  36.067  -2.755  1.00 25.00           C
ATOM     64  CA  ARG    64      -3.976  39.270  -0.694  1.00 25.00           C
ATOM     65  CA  ASN    65      -6.232  40.518   2.058  1.00 25.00           C
ATOM     66  CA  LEU    66      -4.432  38.351   4.655  1.00 25.00           C
ATOM     67  CA  SER    67      -2.997  41.458   6.240  1.00 25.00           C
ATOM     68  CA  GLU    68       0.257  43.183   7.122  1.00 25.00           C
ATOM     69  CA  THR    69       1.118  40.379   9.571  1.00 25.00           C
ATOM     70  CA  GLY    70       1.773  38.274  12.708  1.00 25.00           C
ATOM     71  CA  ARG    71       3.747  35.876  10.467  1.00 25.00           C
ATOM     72  CA  VAL    72       4.033  32.987  12.930  1.00 25.00           C
ATOM     73  CA  ARG    73       3.362  29.709  14.772  1.00 25.00           C
ATOM     74  CA  LEU    74       2.922  26.502  16.877  1.00 25.00           C
ATOM     75  CA  GLY    75       0.201  28.209  18.945  1.00 25.00           C
ATOM     76  CA  ILE    76      -0.996  27.207  22.434  1.00 25.00           C
ATOM     77  CA  GLY    77      -1.108  25.519  25.841  1.00 25.00           C
ATOM     78  CA  PRO    78      -2.109  22.170  24.341  1.00 25.00           C
ATOM     79  CA  THR    79      -3.457  22.154  20.816  1.00 25.00           C
ATOM     80  CA  ARG    80      -3.514  24.659  18.014  1.00 25.00           C
ATOM     81  CA  ASP    81      -1.086  23.684  15.187  1.00 25.00           C
ATOM     82  CA  LEU    82      -0.257  26.496  12.829  1.00 25.00           C
ATOM     83  CA  VAL    83      -2.377  29.012  14.731  1.00 25.00           C
ATOM     84  CA  LEU    84      -3.745  31.548  17.237  1.00 25.00           C
ATOM     85  CA  VAL    85      -4.340  35.203  17.730  1.00 25.00           C
ATOM     86  CA  GLU    86      -6.570  34.863  20.763  1.00 25.00           C
ATOM     87  CA  GLY    87      -3.896  32.429  21.868  1.00 25.00           C
ATOM     88  CA  THR    88      -6.835  30.700  23.624  1.00 25.00           C
ATOM     89  CA  ALA    89      -5.908  27.694  21.506  1.00 25.00           C
ATOM     90  CA  LEU    90      -5.973  25.562  24.655  1.00 25.00           C
ATOM     91  CA  PRO    91      -7.958  22.545  25.663  1.00 25.00           C
ATOM     92  CA  LEU    92     -11.175  22.460  23.728  1.00 25.00           C
ATOM     93  CA  GLU    93     -12.648  20.840  26.836  1.00 25.00           C
ATOM     94  CA  PRO    94     -10.416  17.797  27.298  1.00 25.00           C
ATOM     95  CA  ALA    95     -10.204  16.551  23.699  1.00 25.00           C
ATOM     96  CA  GLY    96     -12.601  18.206  21.342  1.00 25.00           C
ATOM     97  CA  LEU    97     -10.082  19.591  18.864  1.00 25.00           C
ATOM     98  CA  PRO    98     -11.987  17.443  16.313  1.00 25.00           C
ATOM     99  CA  ASP    99      -9.932  15.183  13.975  1.00 25.00           C
ATOM    100  CA  GLY   100      -7.105  15.702  16.465  1.00 25.00           C
ATOM    101  CA  VAL   101      -5.732  18.681  14.547  1.00 25.00           C
ATOM    102  CA  GLY   102      -7.371  21.988  15.337  1.00 25.00           C
ATOM    103  CA  ASP   103      -8.450  22.082  11.699  1.00 25.00           C
ATOM    104  CA  THR   104      -7.738  25.817  11.668  1.00 25.00           C
ATOM    105  CA  PHE   105      -7.345  28.068  14.692  1.00 25.00           C
ATOM    106  CA  ALA   106      -8.552  31.545  15.611  1.00 25.00           C
ATOM    107  CA  GLU   107     -11.351  32.669  18.000  1.00 25.00           C
ATOM    108  CA  LYS   108     -13.394  34.153  20.843  1.00 25.00           C
ATOM    109  CA  THR   109     -16.819  32.958  19.661  1.00 25.00           C
ATOM    110  CA  GLY   110     -17.590  32.631  15.971  1.00 25.00           C
ATOM    111  CA  PHE   111     -16.938  36.406  15.927  1.00 25.00           C
ATOM    112  CA  ASP   112     -17.927  39.930  16.961  1.00 25.00           C
ATOM    113  CA  PRO   113     -16.007  39.110  20.129  1.00 25.00           C
ATOM    114  CA  ARG   114     -13.207  40.293  22.458  1.00 25.00           C
ATOM    115  CA  ARG   115     -13.419  43.813  20.967  1.00 25.00           C
ATOM    116  CA  LEU   116     -13.774  42.838  17.373  1.00 25.00           C
ATOM    117  CA  THR   117     -10.204  43.986  16.822  1.00 25.00           C
ATOM    118  CA  THR   118      -9.055  40.601  18.011  1.00 25.00           C
ATOM    119  CA  SER   119      -6.473  39.222  15.487  1.00 25.00           C
ATOM    120  CA  TYR   120      -2.754  39.137  14.855  1.00 25.00           C
ATOM    121  CA  LEU   121      -0.316  38.410  17.608  1.00 25.00           C
ATOM    122  CA  TYR   122      -2.495  38.741  20.763  1.00 25.00           C
ATOM    123  CA  PHE   123      -1.414  36.428  23.601  1.00 25.00           C
ATOM    124  CA  ARG   124       0.966  35.036  26.283  1.00 25.00           C
ATOM    125  CA  ILE   125       1.895  31.912  28.159  1.00 25.00           C
ATOM    126  CA  SER   126       2.904  31.022  31.667  1.00 25.00           C
ATOM    127  CA  PRO   127       2.987  27.200  32.070  1.00 25.00           C
ATOM    128  CA  ARG   128       3.613  23.825  30.371  1.00 25.00           C
ATOM    129  CA  ARG   129       3.377  25.487  26.929  1.00 25.00           C
ATOM    130  CA  VAL   130       5.863  28.183  28.032  1.00 25.00           C
ATOM    131  CA  GLN   131       8.266  25.483  29.301  1.00 25.00           C
ATOM    132  CA  ALA   132       7.975  23.624  25.966  1.00 25.00           C
ATOM    133  CA  TRP   133       8.704  26.867  24.065  1.00 25.00           C
ATOM    134  CA  ARG   134      11.770  27.500  26.269  1.00 25.00           C
ATOM    135  CA  GLU   135      13.007  23.935  25.614  1.00 25.00           C
ATOM    136  CA  ALA   136      12.540  24.440  21.846  1.00 25.00           C
ATOM    137  CA  ASN   137      14.496  27.729  22.019  1.00 25.00           C
ATOM    138  CA  GLU   138      17.313  25.980  23.936  1.00 25.00           C
ATOM    139  CA  LEU   139      17.409  23.198  21.306  1.00 25.00           C
ATOM    140  CA  SER   140      17.588  25.811  18.512  1.00 25.00           C
ATOM    141  CA  GLY   141      20.460  27.585  20.322  1.00 25.00           C
ATOM    142  CA  ARG   142      22.314  24.254  20.696  1.00 25.00           C
ATOM    143  CA  GLU   143      21.828  23.536  16.966  1.00 25.00           C
ATOM    144  CA  LEU   144      23.173  27.014  16.095  1.00 25.00           C
ATOM    145  CA  MET   145      19.834  28.670  15.290  1.00 25.00           C
ATOM    146  CA  ARG   146      22.033  31.620  14.321  1.00 25.00           C
ATOM    147  CA  ASP   147      21.688  30.164  10.840  1.00 25.00           C
ATOM    148  CA  GLY   148      18.283  31.840  10.519  1.00 25.00           C
ATOM    149  CA  GLU   149      14.645  31.400  11.366  1.00 25.00           C
ATOM    150  CA  TRP   150      11.020  31.956  10.594  1.00 25.00           C
ATOM    151  CA  LEU   151       9.782  32.703  14.104  1.00 25.00           C
TER
END
