
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   12 (  100),  selected   12 , name T0299TS677_2_1-D2
# Molecule2: number of CA atoms   89 (  757),  selected   89 , name T0299_D2.pdb
# PARAMETERS: T0299TS677_2_1-D2.T0299_D2.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    L      79      L      79           -
LGA    -       -      E      80           -
LGA    -       -      D      81           -
LGA    -       -      F      82           -
LGA    -       -      E      83           -
LGA    -       -      A      84           -
LGA    -       -      E      85           -
LGA    -       -      L      86           -
LGA    -       -      E      87           -
LGA    -       -      N      88           -
LGA    -       -      L      89           -
LGA    -       -      P      90           -
LGA    -       -      A      91           -
LGA    -       -      W      92           -
LGA    -       -      W      93           -
LGA    -       -      S      94           -
LGA    -       -      R      95           -
LGA    -       -      D      96           -
LGA    -       -      L      97           -
LGA    -       -      A      98           -
LGA    -       -      R      99           -
LGA    -       -      K     100           -
LGA    -       -      D     101           -
LGA    -       -      F     102           -
LGA    -       -      L     103           -
LGA    -       -      F     104           -
LGA    -       -      Y     105           -
LGA    -       -      T     106           -
LGA    -       -      E     107           -
LGA    -       -      G     108           -
LGA    -       -      L     109           -
LGA    -       -      D     110           -
LGA    -       -      V     111           -
LGA    -       -      D     112           -
LGA    -       -      Q     113           -
LGA    -       -      V     114           -
LGA    -       -      I     115           -
LGA    -       -      A     116           -
LGA    -       -      T     117           -
LGA    -       -      V     118           -
LGA    -       -      E     119           -
LGA    -       -      S     120           -
LGA    -       -      L     121           -
LGA    -       -      E     122           -
LGA    -       -      L     123           -
LGA    -       -      K     124           -
LGA    -       -      D     125           -
LGA    E      80      E     126           #
LGA    -       -      V     127           -
LGA    -       -      L     128           -
LGA    -       -      Y     129           -
LGA    -       -      F     130           -
LGA    -       -      G     131           -
LGA    -       -      K     132           -
LGA    -       -      L     133           -
LGA    -       -      G     134           -
LGA    -       -      I     135           -
LGA    -       -      F     136           -
LGA    -       -      W     137           -
LGA    -       -      G     138           -
LGA    -       -      K     139           -
LGA    -       -      F     140           -
LGA    -       -      S     141           -
LGA    D      81      E     142          1.172
LGA    F      82      E     143          2.108
LGA    E      83      S     144          1.554
LGA    A      84      Y     145          1.238
LGA    E      85      S     146          0.895
LGA    L      86      K     147          1.513
LGA    E      87      T     148          1.188
LGA    -       -      A     149           -
LGA    -       -      Y     150           -
LGA    N      88      H     151          0.914
LGA    L      89      K     152          1.402
LGA    P      90      Y     153          3.440
LGA    -       -      L     154           -
LGA    -       -      L     155           -
LGA    -       -      K     156           -
LGA    -       -      V     157           -
LGA    -       -      P     158           -
LGA    -       -      F     159           -
LGA    -       -      Y     160           -
LGA    -       -      R     161           -
LGA    -       -      H     162           -
LGA    -       -      I     163           -
LGA    -       -      T     164           -
LGA    -       -      I     165           -
LGA    -       -      R     166           -
LGA    -       -      N     167           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   12   89    5.0     10    1.70     0.00     10.370     0.556

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.519570 * X  +   0.854407 * Y  +  -0.006018 * Z  +   6.953121
  Y_new =  -0.419368 * X  +   0.248871 * Y  +  -0.873037 * Z  +  82.091354
  Z_new =  -0.744431 * X  +   0.456128 * Y  +   0.487617 * Z  +  -3.675738 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.752045   -2.389548  [ DEG:    43.0890   -136.9110 ]
  Theta =   0.839682    2.301911  [ DEG:    48.1102    131.8898 ]
  Phi   =  -0.679082    2.462511  [ DEG:   -38.9085    141.0915 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0299TS677_2_1-D2                             
REMARK     2: T0299_D2.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0299TS677_2_1-D2.T0299_D2.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   12   89   5.0   10   1.70    0.00  10.370
REMARK  ---------------------------------------------------------- 
MOLECULE T0299TS677_2_1-D2
REMARK PARENT number 1
PFRMAT     TS
TARGET     T0299
PARENT     1zzmA          
ATOM   1384  N   LEU    79      24.284  54.928 -18.326  1.00   .09       1SG1385
ATOM   1385  CA  LEU    79      24.497  55.877 -17.273  1.00   .09       1SG1386
ATOM   1386  CB  LEU    79      24.503  57.331 -17.775  1.00   .09       1SG1387
ATOM   1387  CG  LEU    79      25.657  57.640 -18.746  1.00   .09       1SG1388
ATOM   1388  CD2 LEU    79      27.014  57.241 -18.145  1.00   .09       1SG1389
ATOM   1389  CD1 LEU    79      25.616  59.104 -19.213  1.00   .09       1SG1390
ATOM   1390  C   LEU    79      23.391  55.753 -16.277  1.00   .09       1SG1391
ATOM   1391  O   LEU    79      23.637  55.729 -15.072  1.00   .09       1SG1392
ATOM   1392  N   GLU    80      22.136  55.661 -16.750  1.00   .18       1SG1393
ATOM   1393  CA  GLU    80      21.045  55.584 -15.826  1.00   .18       1SG1394
ATOM   1394  CB  GLU    80      19.668  55.717 -16.490  1.00   .18       1SG1395
ATOM   1395  CG  GLU    80      19.400  57.100 -17.082  1.00   .18       1SG1396
ATOM   1396  CD  GLU    80      18.012  57.074 -17.701  1.00   .18       1SG1397
ATOM   1397  OE1 GLU    80      17.021  57.034 -16.929  1.00   .18       1SG1398
ATOM   1398  OE2 GLU    80      17.925  57.078 -18.960  1.00   .18       1SG1399
ATOM   1399  C   GLU    80      21.107  54.285 -15.080  1.00   .18       1SG1400
ATOM   1400  O   GLU    80      20.792  54.229 -13.893  1.00   .18       1SG1401
ATOM   1401  N   ASP    81      21.500  53.183 -15.748  1.00   .36       1SG1402
ATOM   1402  CA  ASP    81      21.562  51.955 -15.006  1.00   .36       1SG1403
ATOM   1403  CB  ASP    81      21.896  50.728 -15.865  1.00   .36       1SG1404
ATOM   1404  CG  ASP    81      21.498  49.500 -15.058  1.00   .36       1SG1405
ATOM   1405  OD1 ASP    81      21.539  49.574 -13.801  1.00   .36       1SG1406
ATOM   1406  OD2 ASP    81      21.142  48.469 -15.690  1.00   .36       1SG1407
ATOM   1407  C   ASP    81      22.628  52.118 -13.965  1.00   .36       1SG1408
ATOM   1408  O   ASP    81      22.457  51.724 -12.809  1.00   .36       1SG1409
ATOM   1409  N   PHE    82      23.752  52.755 -14.355  1.00   .54       1SG1410
ATOM   1410  CA  PHE    82      24.812  53.010 -13.426  1.00   .54       1SG1411
ATOM   1411  CB  PHE    82      25.920  53.959 -13.937  1.00   .54       1SG1412
ATOM   1412  CG  PHE    82      26.944  53.312 -14.808  1.00   .54       1SG1413
ATOM   1413  CD1 PHE    82      27.988  52.614 -14.244  1.00   .54       1SG1414
ATOM   1414  CD2 PHE    82      26.895  53.436 -16.176  1.00   .54       1SG1415
ATOM   1415  CE1 PHE    82      28.952  52.030 -15.031  1.00   .54       1SG1416
ATOM   1416  CE2 PHE    82      27.855  52.854 -16.970  1.00   .54       1SG1417
ATOM   1417  CZ  PHE    82      28.886  52.147 -16.399  1.00   .54       1SG1418
ATOM   1418  C   PHE    82      24.192  53.794 -12.331  1.00   .54       1SG1419
ATOM   1419  O   PHE    82      24.556  53.602 -11.171  1.00   .54       1SG1420
ATOM   1420  N   GLU    83      23.223  54.669 -12.695  1.00   .62       1SG1421
ATOM   1421  CA  GLU    83      22.589  55.564 -11.773  1.00   .62       1SG1422
ATOM   1422  CB  GLU    83      21.438  56.403 -12.363  1.00   .62       1SG1423
ATOM   1423  CG  GLU    83      21.071  57.629 -11.519  1.00   .62       1SG1424
ATOM   1424  CD  GLU    83      20.500  57.166 -10.186  1.00   .62       1SG1425
ATOM   1425  OE1 GLU    83      19.463  56.451 -10.202  1.00   .62       1SG1426
ATOM   1426  OE2 GLU    83      21.099  57.516  -9.133  1.00   .62       1SG1427
ATOM   1427  C   GLU    83      22.059  54.719 -10.687  1.00   .62       1SG1428
ATOM   1428  O   GLU    83      22.762  54.525  -9.696  1.00   .62       1SG1429
ATOM   1429  N   ALA    84      20.801  54.239 -10.651  1.00   .64       1SG1430
ATOM   1430  CA  ALA    84      21.197  53.496  -9.524  1.00   .64       1SG1431
ATOM   1431  CB  ALA    84      20.092  53.392  -8.471  1.00   .64       1SG1432
ATOM   1432  C   ALA    84      21.498  52.103  -9.910  1.00   .64       1SG1433
ATOM   1433  O   ALA    84      20.914  51.516 -10.809  1.00   .64       1SG1434
ATOM   1434  N   GLU    85      22.305  51.498  -9.055  1.00   .66       1SG1435
ATOM   1435  CA  GLU    85      22.518  50.150  -8.706  1.00   .66       1SG1436
ATOM   1436  CB  GLU    85      23.800  49.525  -9.291  1.00   .66       1SG1437
ATOM   1437  CG  GLU    85      25.109  50.162  -8.823  1.00   .66       1SG1438
ATOM   1438  CD  GLU    85      26.256  49.425  -9.498  1.00   .66       1SG1439
ATOM   1439  OE1 GLU    85      25.977  48.437 -10.229  1.00   .66       1SG1440
ATOM   1440  OE2 GLU    85      27.429  49.834  -9.286  1.00   .66       1SG1441
ATOM   1441  C   GLU    85      22.752  50.505  -7.290  1.00   .66       1SG1442
ATOM   1442  O   GLU    85      22.394  49.828  -6.329  1.00   .66       1SG1443
ATOM   1443  N   LEU    86      23.381  51.705  -7.210  1.00   .61       1SG1444
ATOM   1444  CA  LEU    86      23.814  52.383  -6.028  1.00   .61       1SG1445
ATOM   1445  CB  LEU    86      24.652  53.644  -6.310  1.00   .61       1SG1446
ATOM   1446  CG  LEU    86      25.936  53.397  -7.122  1.00   .61       1SG1447
ATOM   1447  CD2 LEU    86      26.916  54.574  -6.990  1.00   .61       1SG1448
ATOM   1448  CD1 LEU    86      25.610  53.055  -8.584  1.00   .61       1SG1449
ATOM   1449  C   LEU    86      22.622  52.866  -5.285  1.00   .61       1SG1450
ATOM   1450  O   LEU    86      22.490  52.612  -4.090  1.00   .61       1SG1451
ATOM   1451  N   GLU    87      21.707  53.573  -5.976  1.00   .47       1SG1452
ATOM   1452  CA  GLU    87      20.585  54.071  -5.238  1.00   .47       1SG1453
ATOM   1453  CB  GLU    87      19.627  54.970  -6.043  1.00   .47       1SG1454
ATOM   1454  CG  GLU    87      18.452  55.511  -5.224  1.00   .47       1SG1455
ATOM   1455  CD  GLU    87      17.369  54.442  -5.163  1.00   .47       1SG1456
ATOM   1456  OE1 GLU    87      17.448  53.467  -5.956  1.00   .47       1SG1457
ATOM   1457  OE2 GLU    87      16.442  54.593  -4.324  1.00   .47       1SG1458
ATOM   1458  C   GLU    87      19.849  52.871  -4.768  1.00   .47       1SG1459
ATOM   1459  O   GLU    87      19.331  52.841  -3.652  1.00   .47       1SG1460
ATOM   1460  N   ASN    88      19.809  51.829  -5.617  1.00   .33       1SG1461
ATOM   1461  CA  ASN    88      19.139  50.638  -5.197  1.00   .33       1SG1462
ATOM   1462  CB  ASN    88      19.221  49.518  -6.245  1.00   .33       1SG1463
ATOM   1463  CG  ASN    88      18.453  49.978  -7.476  1.00   .33       1SG1464
ATOM   1464  OD1 ASN    88      17.452  50.684  -7.364  1.00   .33       1SG1465
ATOM   1465  ND2 ASN    88      18.931  49.570  -8.681  1.00   .33       1SG1466
ATOM   1466  C   ASN    88      19.844  50.160  -3.970  1.00   .33       1SG1467
ATOM   1467  O   ASN    88      19.211  49.846  -2.960  1.00   .33       1SG1468
ATOM   1468  N   LEU    89      21.192  50.119  -4.014  1.00   .33       1SG1469
ATOM   1469  CA  LEU    89      21.922  49.686  -2.855  1.00   .33       1SG1470
ATOM   1470  CB  LEU    89      23.409  49.384  -3.155  1.00   .33       1SG1471
ATOM   1471  CG  LEU    89      23.640  48.110  -3.985  1.00   .33       1SG1472
ATOM   1472  CD2 LEU    89      22.963  46.894  -3.328  1.00   .33       1SG1473
ATOM   1473  CD1 LEU    89      25.136  47.872  -4.239  1.00   .33       1SG1474
ATOM   1474  C   LEU    89      21.686  50.712  -1.771  1.00   .33       1SG1475
ATOM   1475  O   LEU    89      20.798  50.457  -0.962  1.00   .33       1SG1476
ATOM   1476  N   PRO    90      22.347  51.844  -1.622  1.00   .31       1SG1477
ATOM   1477  CA  PRO    90      21.845  52.703  -0.585  1.00   .31       1SG1478
ATOM   1478  CD  PRO    90      23.803  51.948  -1.685  1.00   .31       1SG1479
ATOM   1479  CB  PRO    90      23.031  53.476  -0.004  1.00   .31       1SG1480
ATOM   1480  CG  PRO    90      24.145  53.297  -1.040  1.00   .31       1SG1481
ATOM   1481  C   PRO    90      20.786  53.580  -1.156  1.00   .31       1SG1482
ATOM   1482  O   PRO    90      21.147  54.608  -1.791  1.00   .31       1SG1483
ATOM   1483  OXT PRO    90      19.584  53.242  -0.988  1.00   .31       1SG1484
TER
END
