
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_1
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_1.T0319.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    K       2      K       2           -
LGA    F       3      -       -           -
LGA    L       4      -       -           -
LGA    T       5      -       -           -
LGA    T       6      F       3           #
LGA    N       7      L       4           #
LGA    F       8      T       5           -
LGA    -       -      T       6           -
LGA    -       -      N       7           -
LGA    -       -      F       8           -
LGA    -       -      L       9           -
LGA    -       -      K      10           -
LGA    -       -      C      11           -
LGA    -       -      S      12           -
LGA    -       -      V      13           -
LGA    -       -      K      14           -
LGA    -       -      A      15           -
LGA    -       -      C      16           -
LGA    -       -      D      17           -
LGA    -       -      T      18           -
LGA    -       -      S      19           -
LGA    -       -      N      20           -
LGA    -       -      D      21           -
LGA    -       -      N      22           -
LGA    -       -      F      23           -
LGA    -       -      P      24           -
LGA    -       -      L      25           -
LGA    -       -      Q      26           -
LGA    -       -      Y      27           -
LGA    -       -      D      28           -
LGA    -       -      G      29           -
LGA    -       -      S      30           -
LGA    -       -      K      31           -
LGA    -       -      C      32           -
LGA    -       -      Q      33           -
LGA    -       -      L      34           -
LGA    -       -      V      35           -
LGA    L       9      Q      36          5.744
LGA    K      10      -       -           -
LGA    C      11      -       -           -
LGA    S      12      -       -           -
LGA    V      13      -       -           -
LGA    K      14      -       -           -
LGA    A      15      -       -           -
LGA    C      16      -       -           -
LGA    D      17      -       -           -
LGA    T      18      -       -           -
LGA    S      19      -       -           -
LGA    N      20      -       -           -
LGA    D      21      -       -           -
LGA    N      22      -       -           -
LGA    F      23      -       -           -
LGA    P      24      -       -           -
LGA    L      25      -       -           -
LGA    Q      26      -       -           -
LGA    Y      27      -       -           -
LGA    D      28      -       -           -
LGA    G      29      -       -           -
LGA    S      30      -       -           -
LGA    K      31      -       -           -
LGA    C      32      -       -           -
LGA    Q      33      -       -           -
LGA    L      34      -       -           -
LGA    V      35      -       -           -
LGA    Q      36      D      37          3.979
LGA    D      37      -       -           -
LGA    E      38      E      38           #
LGA    S      39      S      39          1.395
LGA    I      40      I      40          1.157
LGA    E      41      E      41          2.880
LGA    F      42      F      42          2.038
LGA    N      43      N      43          1.185
LGA    P      44      P      44          0.913
LGA    E      45      E      45          1.675
LGA    F      46      F      46          1.864
LGA    L      47      L      47          1.142
LGA    L      48      L      48          1.001
LGA    N      49      N      49          1.310
LGA    I      50      I      50          1.066
LGA    V      51      V      51          0.419
LGA    D      52      D      52          0.884
LGA    R      53      R      53          0.644
LGA    V      54      V      54          0.152
LGA    D      55      D      55          0.989
LGA    W      56      W      56          1.483
LGA    P      57      P      57          1.888
LGA    A      58      A      58          0.998
LGA    V      59      V      59          0.677
LGA    L      60      L      60          1.102
LGA    T      61      T      61          0.404
LGA    V      62      V      62          0.801
LGA    A      63      A      63          1.616
LGA    A      64      A      64          1.666
LGA    E      65      E      65          1.319
LGA    L      66      L      66          1.881
LGA    G      67      G      67          2.147
LGA    N      68      N      68          1.078
LGA    N      69      N      69          2.700
LGA    A      70      A      70          2.468
LGA    L      71      L      71          1.610
LGA    P      72      P      72          1.891
LGA    P      73      P      73          2.436
LGA    T      74      T      74          1.733
LGA    K      75      K      75          1.731
LGA    P      76      P      76          2.078
LGA    S      77      S      77          3.707
LGA    F      78      F      78           -
LGA    P      79      P      79           -
LGA    S      80      S      80           -
LGA    S      81      S      81           -
LGA    I      82      I      82           -
LGA    Q      83      Q      83           -
LGA    E      84      E      84           -
LGA    L      85      L      85           -
LGA    T      86      T      86           -
LGA    D      87      D      87           -
LGA    D      88      D      88           -
LGA    D      89      D      89           -
LGA    M      90      M      90           -
LGA    A      91      A      91           -
LGA    I      92      I      92           -
LGA    L      93      L      93           -
LGA    N      94      N      94           -
LGA    D      95      D      95           -
LGA    L      96      L      96           -
LGA    H      97      H      97           -
LGA    T      98      T      98           -
LGA    L      99      L      99           -
LGA    L     100      L     100           -
LGA    L     101      L     101           -
LGA    Q     102      Q     102           -
LGA    T     103      T     103           -
LGA    S     104      S     104           -
LGA    I     105      I     105           -
LGA    -       -      A     106           -
LGA    -       -      E     107           -
LGA    -       -      G     108           -
LGA    -       -      E     109           -
LGA    -       -      M     110           -
LGA    -       -      K     111           -
LGA    -       -      C     112           -
LGA    -       -      R     113           -
LGA    -       -      N     114           -
LGA    -       -      C     115           -
LGA    -       -      G     116           -
LGA    -       -      H     117           -
LGA    -       -      I     118           -
LGA    A     106      Y     119           #
LGA    E     107      Y     120          4.624
LGA    G     108      I     121          4.185
LGA    E     109      K     122           -
LGA    -       -      N     123           -
LGA    -       -      G     124           -
LGA    -       -      I     125           -
LGA    -       -      P     126           -
LGA    -       -      N     127           -
LGA    M     110      L     128          5.225
LGA    K     111      L     129          2.284
LGA    -       -      L     130           -
LGA    C     112      P     131          3.963
LGA    R     113      -       -           -
LGA    N     114      -       -           -
LGA    C     115      -       -           -
LGA    G     116      -       -           -
LGA    H     117      P     132          1.548
LGA    I     118      H     133           #
LGA    Y     119      L     134           #
LGA    Y     120      V     135           -
LGA    I     121      -       -           -
LGA    K     122      -       -           -
LGA    N     123      -       -           -
LGA    G     124      -       -           -
LGA    I     125      -       -           -
LGA    P     126      -       -           -
LGA    N     127      -       -           -
LGA    L     128      -       -           -
LGA    L     129      -       -           -
LGA    L     130      -       -           -
LGA    P     131      -       -           -
LGA    P     132      -       -           -
LGA    H     133      -       -           -
LGA    L     134      -       -           -
LGA    V     135      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  135  135    5.0     47    2.28    82.98     28.845     1.971

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.909159 * X  +   0.404724 * Y  +  -0.098126 * Z  +  18.481508
  Y_new =   0.218951 * X  +   0.664968 * Y  +   0.714058 * Z  +  -3.149758
  Z_new =   0.354247 * X  +   0.627707 * Y  +  -0.693176 * Z  +  15.171036 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.405718   -0.735874  [ DEG:   137.8375    -42.1625 ]
  Theta =  -0.362109   -2.779484  [ DEG:   -20.7473   -159.2527 ]
  Phi   =   2.905265   -0.236328  [ DEG:   166.4594    -13.5406 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_1                                  
REMARK     2: T0319.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_1.T0319.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  135  135   5.0   47   2.28   82.98  28.845
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_1
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      34.328  -6.556  11.197  1.00  0.00              
ATOM      2  CA  LYS     2      30.576  -5.125  12.460  1.00  0.00              
ATOM      3  CA  PHE     3      28.094  -4.858   9.125  1.00  0.00              
ATOM      4  CA  LEU     4      31.346  -4.423  10.556  1.00  0.00              
ATOM      5  CA  THR     5      32.098  -0.776   9.716  1.00  0.00              
ATOM      6  CA  THR     6      28.624   0.528  10.646  1.00  0.00              
ATOM      7  CA  ASN     7      28.761  -1.312  14.000  1.00  0.00              
ATOM      8  CA  PHE     8      32.211   0.040  14.907  1.00  0.00              
ATOM      9  CA  LEU     9      31.182   3.652  14.151  1.00  0.00              
ATOM     10  CA  LYS    10      27.824   3.411  16.011  1.00  0.00              
ATOM     11  CA  CYS    11      28.533   1.611  19.315  1.00  0.00              
ATOM     12  CA  SER    12      26.568   2.977  22.193  1.00  0.00              
ATOM     13  CA  VAL    13      25.162   0.063  24.105  1.00  0.00              
ATOM     14  CA  LYS    14      25.527   0.287  27.834  1.00  0.00              
ATOM     15  CA  ALA    15      22.187  -1.018  29.072  1.00  0.00              
ATOM     16  CA  CYS    16      21.555  -3.701  26.514  1.00  0.00              
ATOM     17  CA  ASP    17      19.198  -6.426  27.576  1.00  0.00              
ATOM     18  CA  THR    18      19.521  -9.675  25.781  1.00  0.00              
ATOM     19  CA  SER    19      16.207 -11.462  26.012  1.00  0.00              
ATOM     20  CA  ASN    20      16.527 -14.104  23.337  1.00  0.00              
ATOM     21  CA  ASP    21      13.747 -13.076  21.052  1.00  0.00              
ATOM     22  CA  ASN    22      14.909  -9.760  19.793  1.00  0.00              
ATOM     23  CA  PHE    23      17.230  -7.704  21.910  1.00  0.00              
ATOM     24  CA  PRO    24      16.118  -5.164  24.295  1.00  0.00              
ATOM     25  CA  LEU    25      18.238  -1.989  24.521  1.00  0.00              
ATOM     26  CA  GLN    26      17.455   0.553  27.084  1.00  0.00              
ATOM     27  CA  TYR    27      18.354   4.170  26.424  1.00  0.00              
ATOM     28  CA  ASP    28      18.152   6.672  29.240  1.00  0.00              
ATOM     29  CA  GLY    29      18.643  10.284  27.975  1.00  0.00              
ATOM     30  CA  SER    30      21.671  11.162  30.074  1.00  0.00              
ATOM     31  CA  LYS    31      23.365   7.820  29.169  1.00  0.00              
ATOM     32  CA  CYS    32      22.819   8.072  25.472  1.00  0.00              
ATOM     33  CA  GLN    33      24.307  11.595  25.363  1.00  0.00              
ATOM     34  CA  LEU    34      27.355  10.449  27.358  1.00  0.00              
ATOM     35  CA  VAL    35      27.928   7.427  25.098  1.00  0.00              
ATOM     36  CA  GLN    36      27.732   9.409  21.832  1.00  0.00              
ATOM     37  CA  ASP    37      30.355  11.776  23.271  1.00  0.00              
ATOM     38  CA  GLU    38      32.651   9.012  24.574  1.00  0.00              
ATOM     39  CA  SER    39      33.038   6.888  21.479  1.00  0.00              
ATOM     40  CA  ILE    40      32.305   3.399  22.654  1.00  0.00              
ATOM     41  CA  GLU    41      34.405   1.226  20.399  1.00  0.00              
ATOM     42  CA  PHE    42      32.560  -1.927  19.559  1.00  0.00              
ATOM     43  CA  ASN    43      33.264  -4.981  21.671  1.00  0.00              
ATOM     44  CA  PRO    44      32.971  -8.082  19.557  1.00  0.00              
ATOM     45  CA  GLU    45      30.398  -9.735  21.848  1.00  0.00              
ATOM     46  CA  PHE    46      27.906  -6.819  21.576  1.00  0.00              
ATOM     47  CA  LEU    47      28.338  -6.657  17.838  1.00  0.00              
ATOM     48  CA  LEU    48      27.811 -10.400  17.434  1.00  0.00              
ATOM     49  CA  ASN    49      24.701 -10.327  19.558  1.00  0.00              
ATOM     50  CA  ILE    50      23.386  -7.396  17.513  1.00  0.00              
ATOM     51  CA  VAL    51      24.136  -9.267  14.262  1.00  0.00              
ATOM     52  CA  ASP    52      22.423 -12.422  15.546  1.00  0.00              
ATOM     53  CA  ARG    53      19.131 -10.482  16.036  1.00  0.00              
ATOM     54  CA  VAL    54      19.271  -8.459  12.898  1.00  0.00              
ATOM     55  CA  ASP    55      16.255  -8.307  10.590  1.00  0.00              
ATOM     56  CA  TRP    56      18.033  -8.504   7.287  1.00  0.00              
ATOM     57  CA  PRO    57      15.410  -6.946   5.078  1.00  0.00              
ATOM     58  CA  ALA    58      15.364  -3.830   7.178  1.00  0.00              
ATOM     59  CA  VAL    59      19.109  -3.554   7.310  1.00  0.00              
ATOM     60  CA  LEU    60      19.554  -3.922   3.592  1.00  0.00              
ATOM     61  CA  THR    61      16.982  -1.276   2.929  1.00  0.00              
ATOM     62  CA  VAL    62      18.581   1.090   5.403  1.00  0.00              
ATOM     63  CA  ALA    63      22.087   0.618   3.888  1.00  0.00              
ATOM     64  CA  ALA    64      20.727   1.204   0.421  1.00  0.00              
ATOM     65  CA  GLU    65      18.858   4.399   1.438  1.00  0.00              
ATOM     66  CA  LEU    66      21.963   5.784   3.149  1.00  0.00              
ATOM     67  CA  GLY    67      24.419   5.086   0.376  1.00  0.00              
ATOM     68  CA  ASN    68      26.740   2.748   2.353  1.00  0.00              
ATOM     69  CA  ASN    69      28.677   1.080  -0.406  1.00  0.00              
ATOM     70  CA  ALA    70      31.027  -0.731   2.030  1.00  0.00              
ATOM     71  CA  LEU    71      28.346  -3.057   3.434  1.00  0.00              
ATOM     72  CA  PRO    72      28.504  -6.611   2.252  1.00  0.00              
ATOM     73  CA  PRO    73      25.737  -7.503  -0.145  1.00  0.00              
ATOM     74  CA  THR    74      24.106 -10.300   1.722  1.00  0.00              
ATOM     75  CA  LYS    75      24.995 -10.053   5.422  1.00  0.00              
ATOM     76  CA  PRO    76      26.763 -13.348   6.154  1.00  0.00              
ATOM     77  CA  SER    77      24.839 -14.793   9.068  1.00  0.00              
ATOM     78  CA  PHE    78      21.428 -14.513   7.355  1.00  0.00              
ATOM     79  CA  PRO    79      19.364 -17.560   6.527  1.00  0.00              
ATOM     80  CA  SER    80      19.124 -17.537   2.774  1.00  0.00              
ATOM     81  CA  SER    81      15.575 -16.322   2.387  1.00  0.00              
ATOM     82  CA  ILE    82      13.768 -16.693   5.726  1.00  0.00              
ATOM     83  CA  GLN    83      11.132 -18.955   4.088  1.00  0.00              
ATOM     84  CA  GLU    84      13.720 -21.489   2.957  1.00  0.00              
ATOM     85  CA  LEU    85      15.244 -22.066   6.374  1.00  0.00              
ATOM     86  CA  THR    86      12.020 -22.600   7.993  1.00  0.00              
ATOM     87  CA  ASP    87      10.397 -22.989  11.234  1.00  0.00              
ATOM     88  CA  ASP    88      12.319 -21.052  13.925  1.00  0.00              
ATOM     89  CA  ASP    89      12.801 -18.226  11.375  1.00  0.00              
ATOM     90  CA  MET    90       9.121 -17.830  10.741  1.00  0.00              
ATOM     91  CA  ALA    91       8.248 -17.493  14.450  1.00  0.00              
ATOM     92  CA  ILE    92      10.930 -14.868  14.944  1.00  0.00              
ATOM     93  CA  LEU    93       9.767 -12.902  11.970  1.00  0.00              
ATOM     94  CA  ASN    94       6.130 -12.919  13.134  1.00  0.00              
ATOM     95  CA  ASP    95       7.156 -11.632  16.577  1.00  0.00              
ATOM     96  CA  LEU    96       9.226  -8.859  14.948  1.00  0.00              
ATOM     97  CA  HIS    97       6.258  -7.965  12.746  1.00  0.00              
ATOM     98  CA  THR    98       3.945  -7.772  15.731  1.00  0.00              
ATOM     99  CA  LEU    99       6.391  -5.530  17.615  1.00  0.00              
ATOM    100  CA  LEU   100       6.668  -3.202  14.607  1.00  0.00              
ATOM    101  CA  LEU   101       2.889  -2.925  14.144  1.00  0.00              
ATOM    102  CA  GLN   102       2.584  -1.629  17.765  1.00  0.00              
ATOM    103  CA  THR   103       5.637   0.576  17.897  1.00  0.00              
ATOM    104  CA  SER   104       5.791   4.120  19.062  1.00  0.00              
ATOM    105  CA  ILE   105       8.358   6.201  17.449  1.00  0.00              
ATOM    106  CA  ALA   106       9.741   9.223  19.152  1.00  0.00              
ATOM    107  CA  GLU   107      12.690  11.085  17.614  1.00  0.00              
ATOM    108  CA  GLY   108      14.989   8.174  16.861  1.00  0.00              
ATOM    109  CA  GLU   109      13.787   6.328  19.921  1.00  0.00              
ATOM    110  CA  MET   110      11.619   3.315  19.620  1.00  0.00              
ATOM    111  CA  LYS   111       9.140   2.467  22.257  1.00  0.00              
ATOM    112  CA  CYS   112       7.135  -0.702  22.272  1.00  0.00              
ATOM    113  CA  ARG   113       3.555  -0.232  23.491  1.00  0.00              
ATOM    114  CA  ASN   114       2.949  -3.815  24.409  1.00  0.00              
ATOM    115  CA  CYS   115       6.088  -4.965  26.095  1.00  0.00              
ATOM    116  CA  GLY   116       7.605  -1.751  27.287  1.00  0.00              
ATOM    117  CA  HIS   117      11.012  -2.355  25.857  1.00  0.00              
ATOM    118  CA  ILE   118      12.989   0.692  24.925  1.00  0.00              
ATOM    119  CA  TYR   119      15.167   0.547  21.876  1.00  0.00              
ATOM    120  CA  TYR   120      17.679   3.323  21.129  1.00  0.00              
ATOM    121  CA  ILE   121      18.885   3.562  17.622  1.00  0.00              
ATOM    122  CA  LYS   122      21.105   6.148  16.280  1.00  0.00              
ATOM    123  CA  ASN   123      21.723   5.138  12.613  1.00  0.00              
ATOM    124  CA  GLY   124      18.814   2.820  12.161  1.00  0.00              
ATOM    125  CA  ILE   125      15.767   4.711  13.233  1.00  0.00              
ATOM    126  CA  PRO   126      15.299   7.742  11.103  1.00  0.00              
ATOM    127  CA  ASN   127      15.745   5.479   8.024  1.00  0.00              
ATOM    128  CA  LEU   128      13.257   2.727   8.957  1.00  0.00              
ATOM    129  CA  LEU   129      10.374   4.732  10.360  1.00  0.00              
ATOM    130  CA  LEU   130       7.329   2.385  10.139  1.00  0.00              
ATOM    131  CA  PRO   131       3.869   3.836  10.598  1.00  0.00              
ATOM    132  CA  PRO   132       1.872   2.066  13.376  1.00  0.00              
ATOM    133  CA  HIS   133      -0.324   0.353  10.300  1.00  0.00              
ATOM    134  CA  LEU   134       2.863  -0.860   8.468  1.00  0.00              
ATOM    135  CA  VAL   135       6.110  -0.436   6.233  1.00  0.00              
TER                                                                             
END
