
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   36 (  178),  selected   36 , name T0335TS757_4-D1
# Molecule2: number of CA atoms   36 (  584),  selected   36 , name T0335_D1.pdb
# PARAMETERS: T0335TS757_4-D1.T0335_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    A       5      -       -           -
LGA    K       6      -       -           -
LGA    I       7      -       -           -
LGA    A       8      A       5          3.142
LGA    R       9      K       6          2.206
LGA    I      10      I       7          3.487
LGA    N      11      A       8          3.045
LGA    E      12      R       9          1.458
LGA    L      13      I      10          1.902
LGA    A      14      N      11          2.132
LGA    A      15      E      12          1.508
LGA    K      16      L      13          0.780
LGA    A      17      A      14          1.150
LGA    K      18      A      15          1.112
LGA    A      19      K      16          2.102
LGA    G      20      A      17          2.123
LGA    V      21      K      18          6.408
LGA    -       -      A      19           -
LGA    -       -      G      20           -
LGA    I      22      V      21           #
LGA    T      23      I      22          2.757
LGA    E      24      T      23          2.313
LGA    E      25      E      24          1.784
LGA    -       -      E      25           -
LGA    E      26      E      26          0.336
LGA    K      27      K      27          1.549
LGA    A      28      A      28          1.887
LGA    E      29      E      29          1.618
LGA    Q      30      Q      30          1.002
LGA    Q      31      Q      31          1.609
LGA    K      32      K      32          1.419
LGA    L      33      L      33          1.101
LGA    R      34      R      34          1.495
LGA    Q      35      Q      35          1.430
LGA    E      36      E      36          0.849
LGA    Y      37      Y      37          1.354
LGA    L      38      L      38          1.571
LGA    K      39      K      39          2.443
LGA    G      40      G      40          2.901

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   36   36    5.0     32    2.22    59.38     69.204     1.381

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.813814 * X  +  -0.577291 * Y  +   0.066651 * Z  +  10.145871
  Y_new =  -0.315096 * X  +  -0.341982 * Y  +   0.885304 * Z  +  -3.953332
  Z_new =  -0.488285 * X  +  -0.741474 * Y  +  -0.460211 * Z  +  -6.897813 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.126276    1.015316  [ DEG:  -121.8267     58.1733 ]
  Theta =   0.510123    2.631469  [ DEG:    29.2279    150.7721 ]
  Phi   =  -0.369409    2.772183  [ DEG:   -21.1656    158.8344 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0335TS757_4-D1                               
REMARK     2: T0335_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0335TS757_4-D1.T0335_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   36   36   5.0   32   2.22   59.38  69.204
REMARK  ---------------------------------------------------------- 
MOLECULE T0335TS757_4-D1
PFRMAT TS
TARGET T0335
MODEL  4
PARENT N/A
ATOM     31  N   ALA     5       5.295  -9.190  -9.219  1.00 10.00    
ATOM     32  CA  ALA     5       5.162  -9.254  -7.773  1.00 10.00    
ATOM     33  C   ALA     5       4.680  -7.900  -7.249  1.00 10.00    
ATOM     34  O   ALA     5       3.916  -7.839  -6.286  1.00 10.00    
ATOM     35  CB  ALA     5       6.498  -9.675  -7.156  1.00 10.00    
ATOM     36  N   LYS     6       5.145  -6.848  -7.905  1.00 10.00    
ATOM     37  CA  LYS     6       4.770  -5.498  -7.517  1.00 10.00    
ATOM     38  C   LYS     6       3.314  -5.244  -7.913  1.00 10.00    
ATOM     39  O   LYS     6       2.665  -4.354  -7.366  1.00 10.00    
ATOM     40  CB  LYS     6       5.752  -4.481  -8.101  1.00 10.00    
ATOM     45  N   ILE     7       2.845  -6.042  -8.861  1.00 10.00    
ATOM     46  CA  ILE     7       1.477  -5.915  -9.336  1.00 10.00    
ATOM     47  C   ILE     7       0.513  -6.323  -8.220  1.00 10.00    
ATOM     48  O   ILE     7      -0.524  -5.690  -8.030  1.00 10.00    
ATOM     49  CB  ILE     7       0.296  -7.945 -10.409  1.00 10.00    
ATOM     53  N   ALA     8       0.891  -7.377  -7.512  1.00 10.00    
ATOM     54  CA  ALA     8       0.073  -7.876  -6.420  1.00 10.00    
ATOM     55  C   ALA     8       0.353  -7.054  -5.161  1.00 10.00    
ATOM     56  O   ALA     8      -0.495  -6.961  -4.274  1.00 10.00    
ATOM     57  CB  ALA     8       0.349  -9.367  -6.215  1.00 10.00    
ATOM     58  N   ARG     9       1.546  -6.478  -5.122  1.00 10.00    
ATOM     59  CA  ARG     9       1.949  -5.666  -3.986  1.00 10.00    
ATOM     60  C   ARG     9       1.116  -4.383  -3.928  1.00 10.00    
ATOM     61  O   ARG     9       0.593  -4.024  -2.875  1.00 10.00    
ATOM     62  CB  ARG     9       3.432  -5.299  -4.069  1.00 10.00    
ATOM     69  N   ILE    10       1.019  -3.727  -5.077  1.00 10.00    
ATOM     70  CA  ILE    10       0.260  -2.492  -5.169  1.00 10.00    
ATOM     71  C   ILE    10      -1.214  -2.781  -4.875  1.00 10.00    
ATOM     72  O   ILE    10      -1.921  -1.931  -4.337  1.00 10.00    
ATOM     73  CB  ILE    10      -0.839  -1.839  -7.413  1.00 10.00    
ATOM     77  N   ASN    11      -1.632  -3.984  -5.240  1.00 10.00    
ATOM     78  CA  ASN    11      -3.009  -4.396  -5.022  1.00 10.00    
ATOM     79  C   ASN    11      -3.182  -4.830  -3.566  1.00 10.00    
ATOM     80  O   ASN    11      -4.297  -4.844  -3.046  1.00 10.00    
ATOM     81  CB  ASN    11      -3.377  -5.582  -5.916  1.00 10.00    
ATOM     85  N   GLU    12      -2.062  -5.173  -2.946  1.00 10.00    
ATOM     86  CA  GLU    12      -2.075  -5.605  -1.559  1.00 10.00    
ATOM     87  C   GLU    12      -2.088  -4.395  -0.625  1.00 10.00    
ATOM     88  O   GLU    12      -2.678  -4.443   0.452  1.00 10.00    
ATOM     89  CB  GLU    12      -0.886  -6.519  -1.258  1.00 10.00    
ATOM     94  N   LEU    13      -1.428  -3.335  -1.073  1.00 10.00    
ATOM     95  CA  LEU    13      -1.356  -2.113  -0.290  1.00 10.00    
ATOM     96  C   LEU    13      -2.647  -1.316  -0.478  1.00 10.00    
ATOM     97  O   LEU    13      -3.115  -0.656   0.449  1.00 10.00    
ATOM     98  CB  LEU    13      -0.091  -1.327  -0.640  1.00 10.00    
ATOM    102  N   ALA    14      -3.188  -1.401  -1.685  1.00 10.00    
ATOM    103  CA  ALA    14      -4.417  -0.695  -2.007  1.00 10.00    
ATOM    104  C   ALA    14      -5.604  -1.443  -1.397  1.00 10.00    
ATOM    105  O   ALA    14      -6.633  -0.840  -1.095  1.00 10.00    
ATOM    106  CB  ALA    14      -4.539  -0.547  -3.524  1.00 10.00    
ATOM    107  N   ALA    15      -5.422  -2.745  -1.235  1.00 10.00    
ATOM    108  CA  ALA    15      -6.465  -3.582  -0.666  1.00 10.00    
ATOM    109  C   ALA    15      -6.545  -3.337   0.842  1.00 10.00    
ATOM    110  O   ALA    15      -7.633  -3.171   1.391  1.00 10.00    
ATOM    111  CB  ALA    15      -6.187  -5.048  -1.006  1.00 10.00    
ATOM    112  N   LYS    16      -5.378  -3.323   1.468  1.00 10.00    
ATOM    113  CA  LYS    16      -5.302  -3.102   2.902  1.00 10.00    
ATOM    114  C   LYS    16      -5.717  -1.663   3.216  1.00 10.00    
ATOM    115  O   LYS    16      -6.565  -1.430   4.075  1.00 10.00    
ATOM    116  CB  LYS    16      -3.912  -3.469   3.428  1.00 10.00    
ATOM    121  N   ALA    17      -5.099  -0.734   2.499  1.00 10.00    
ATOM    122  CA  ALA    17      -5.393   0.675   2.690  1.00 10.00    
ATOM    123  C   ALA    17      -6.811   0.968   2.192  1.00 10.00    
ATOM    124  O   ALA    17      -7.504   1.818   2.748  1.00 10.00    
ATOM    125  CB  ALA    17      -4.339   1.519   1.971  1.00 10.00    
ATOM    126  N   LYS    18      -7.199   0.245   1.152  1.00 10.00    
ATOM    127  CA  LYS    18      -8.522   0.416   0.574  1.00 10.00    
ATOM    128  C   LYS    18      -9.579   0.017   1.605  1.00 10.00    
ATOM    129  O   LYS    18     -10.594   0.697   1.754  1.00 10.00    
ATOM    130  CB  LYS    18      -8.632  -0.348  -0.746  1.00 10.00    
ATOM    135  N   ALA    19      -9.307  -1.085   2.289  1.00 10.00    
ATOM    136  CA  ALA    19     -10.223  -1.582   3.302  1.00 10.00    
ATOM    137  C   ALA    19      -9.950  -0.866   4.626  1.00 10.00    
ATOM    138  O   ALA    19     -10.659  -1.080   5.608  1.00 10.00    
ATOM    139  CB  ALA    19     -10.077  -3.101   3.419  1.00 10.00    
ATOM    140  N   GLY    20      -8.921  -0.031   4.610  1.00 10.00    
ATOM    141  CA  GLY    20      -8.547   0.717   5.798  1.00 10.00    
ATOM    142  C   GLY    20      -8.248  -0.222   6.967  1.00 10.00    
ATOM    143  O   GLY    20      -8.469   0.130   8.125  1.00 10.00    
ATOM    144  N   VAL    21      -7.751  -1.403   6.624  1.00 10.00    
ATOM    145  CA  VAL    21      -7.420  -2.396   7.632  1.00 10.00    
ATOM    146  C   VAL    21      -6.149  -1.967   8.367  1.00 10.00    
ATOM    147  O   VAL    21      -5.962  -2.298   9.537  1.00 10.00    
ATOM    148  CB  VAL    21      -8.689  -4.225   6.322  1.00 10.00    
ATOM    151  N   ILE    22      -5.308  -1.237   7.650  1.00 10.00    
ATOM    152  CA  ILE    22      -4.058  -0.759   8.220  1.00 10.00    
ATOM    153  C   ILE    22      -4.231   0.694   8.669  1.00 10.00    
ATOM    154  O   ILE    22      -5.075   1.415   8.139  1.00 10.00    
ATOM    155  CB  ILE    22      -2.832  -2.492   6.750  1.00 10.00    
ATOM    159  N   THR    23      -3.416   1.081   9.639  1.00 10.00    
ATOM    160  CA  THR    23      -3.468   2.434  10.165  1.00 10.00    
ATOM    161  C   THR    23      -2.770   3.404   9.209  1.00 10.00    
ATOM    162  O   THR    23      -2.276   2.999   8.158  1.00 10.00    
ATOM    163  CB  THR    23      -3.277   1.120  12.406  1.00 10.00    
ATOM    166  N   GLU    24      -2.752   4.667   9.608  1.00 10.00    
ATOM    167  CA  GLU    24      -2.122   5.699   8.800  1.00 10.00    
ATOM    168  C   GLU    24      -0.619   5.441   8.687  1.00 10.00    
ATOM    169  O   GLU    24      -0.011   5.731   7.658  1.00 10.00    
ATOM    170  CB  GLU    24      -2.399   7.090   9.373  1.00 10.00    
ATOM    175  N   GLU    25      -0.061   4.898   9.760  1.00 10.00    
ATOM    176  CA  GLU    25       1.360   4.598   9.794  1.00 10.00    
ATOM    177  C   GLU    25       1.679   3.431   8.857  1.00 10.00    
ATOM    178  O   GLU    25       2.746   3.396   8.245  1.00 10.00    
ATOM    179  CB  GLU    25       1.822   4.297  11.221  1.00 10.00    
ATOM    184  N   GLU    26       0.735   2.506   8.772  1.00 10.00    
ATOM    185  CA  GLU    26       0.901   1.341   7.920  1.00 10.00    
ATOM    186  C   GLU    26       0.736   1.733   6.450  1.00 10.00    
ATOM    187  O   GLU    26       1.364   1.142   5.572  1.00 10.00    
ATOM    188  CB  GLU    26      -0.079   0.233   8.307  1.00 10.00    
ATOM    193  N   LYS    27      -0.113   2.724   6.226  1.00 10.00    
ATOM    194  CA  LYS    27      -0.369   3.200   4.877  1.00 10.00    
ATOM    195  C   LYS    27       0.885   3.892   4.338  1.00 10.00    
ATOM    196  O   LYS    27       1.193   3.787   3.152  1.00 10.00    
ATOM    197  CB  LYS    27      -1.618   4.085   4.849  1.00 10.00    
ATOM    202  N   ALA    28       1.574   4.581   5.236  1.00 10.00    
ATOM    203  CA  ALA    28       2.786   5.289   4.865  1.00 10.00    
ATOM    204  C   ALA    28       3.776   4.304   4.239  1.00 10.00    
ATOM    205  O   ALA    28       4.284   4.540   3.145  1.00 10.00    
ATOM    206  CB  ALA    28       3.364   5.991   6.096  1.00 10.00    
ATOM    207  N   GLU    29       4.020   3.219   4.961  1.00 10.00    
ATOM    208  CA  GLU    29       4.939   2.198   4.490  1.00 10.00    
ATOM    209  C   GLU    29       4.401   1.549   3.213  1.00 10.00    
ATOM    210  O   GLU    29       5.153   1.305   2.271  1.00 10.00    
ATOM    211  CB  GLU    29       5.194   1.148   5.573  1.00 10.00    
ATOM    216  N   GLN    30       3.102   1.285   3.222  1.00 10.00    
ATOM    217  CA  GLN    30       2.455   0.669   2.076  1.00 10.00    
ATOM    218  C   GLN    30       2.561   1.582   0.853  1.00 10.00    
ATOM    219  O   GLN    30       2.657   1.103  -0.277  1.00 10.00    
ATOM    220  CB  GLN    30       0.995   0.333   2.386  1.00 10.00    
ATOM    225  N   GLN    31       2.540   2.880   1.119  1.00 10.00    
ATOM    226  CA  GLN    31       2.633   3.863   0.052  1.00 10.00    
ATOM    227  C   GLN    31       3.948   3.698  -0.711  1.00 10.00    
ATOM    228  O   GLN    31       3.972   3.774  -1.938  1.00 10.00    
ATOM    229  CB  GLN    31       2.492   5.284   0.604  1.00 10.00    
ATOM    234  N   LYS    32       5.011   3.474   0.049  1.00 10.00    
ATOM    235  CA  LYS    32       6.327   3.295  -0.541  1.00 10.00    
ATOM    236  C   LYS    32       6.358   1.979  -1.320  1.00 10.00    
ATOM    237  O   LYS    32       6.832   1.937  -2.455  1.00 10.00    
ATOM    238  CB  LYS    32       7.413   3.400   0.532  1.00 10.00    
ATOM    243  N   LEU    33       5.850   0.937  -0.680  1.00 10.00    
ATOM    244  CA  LEU    33       5.814  -0.378  -1.298  1.00 10.00    
ATOM    245  C   LEU    33       5.036  -0.295  -2.613  1.00 10.00    
ATOM    246  O   LEU    33       5.428  -0.902  -3.610  1.00 10.00    
ATOM    247  CB  LEU    33       5.259  -1.415  -0.321  1.00 10.00    
ATOM    251  N   ARG    34       3.948   0.458  -2.575  1.00 10.00    
ATOM    252  CA  ARG    34       3.111   0.627  -3.751  1.00 10.00    
ATOM    253  C   ARG    34       3.855   1.429  -4.821  1.00 10.00    
ATOM    254  O   ARG    34       3.746   1.135  -6.010  1.00 10.00    
ATOM    255  CB  ARG    34       1.806   1.345  -3.400  1.00 10.00    
ATOM    262  N   GLN    35       4.593   2.427  -4.359  1.00 10.00    
ATOM    263  CA  GLN    35       5.356   3.274  -5.261  1.00 10.00    
ATOM    264  C   GLN    35       6.377   2.440  -6.037  1.00 10.00    
ATOM    265  O   GLN    35       6.687   2.744  -7.187  1.00 10.00    
ATOM    266  CB  GLN    35       6.039   4.412  -4.500  1.00 10.00    
ATOM    271  N   GLU    36       6.872   1.404  -5.375  1.00 10.00    
ATOM    272  CA  GLU    36       7.852   0.524  -5.987  1.00 10.00    
ATOM    273  C   GLU    36       7.240  -0.197  -7.189  1.00 10.00    
ATOM    274  O   GLU    36       7.919  -0.436  -8.187  1.00 10.00    
ATOM    275  CB  GLU    36       8.403  -0.476  -4.969  1.00 10.00    
ATOM    280  N   TYR    37       5.963  -0.525  -7.056  1.00 10.00    
ATOM    281  CA  TYR    37       5.252  -1.214  -8.119  1.00 10.00    
ATOM    282  C   TYR    37       5.048  -0.233  -9.274  1.00 10.00    
ATOM    283  O   TYR    37       4.827  -0.646 -10.412  1.00 10.00    
ATOM    284  CB  TYR    37       3.901  -1.621  -7.527  1.00 10.00    
ATOM    292  N   LEU    38       5.129   1.047  -8.943  1.00 10.00    
ATOM    293  CA  LEU    38       4.955   2.090  -9.941  1.00 10.00    
ATOM    294  C   LEU    38       6.189   2.138 -10.843  1.00 10.00    
ATOM    295  O   LEU    38       6.119   2.621 -11.971  1.00 10.00    
ATOM    296  CB  LEU    38       4.634   3.426  -9.267  1.00 10.00    
ATOM    300  N   LYS    39       7.291   1.630 -10.310  1.00 10.00    
ATOM    301  CA  LYS    39       8.540   1.608 -11.053  1.00 10.00    
ATOM    302  C   LYS    39       8.718   0.235 -11.704  1.00 10.00    
ATOM    303  O   LYS    39       9.101   0.142 -12.869  1.00 10.00    
ATOM    304  CB  LYS    39       9.707   2.016 -10.152  1.00 10.00    
ATOM    309  N   GLY    40       8.430  -0.796 -10.924  1.00 10.00    
ATOM    310  CA  GLY    40       8.554  -2.160 -11.409  1.00 10.00    
ATOM    311  C   GLY    40       7.618  -2.406 -12.596  1.00 10.00    
ATOM    312  O   GLY    40       8.018  -3.010 -13.590  1.00 10.00    
TER
END
