
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  104 (  104),  selected  104 , name T0343TS599_5
# Molecule2: number of CA atoms   94 (  282),  selected   94 , name T0343.pdb
# PARAMETERS: T0343TS599_5.T0343.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      -       -           -
LGA    T       2      -       -           -
LGA    W       3      -       -           -
LGA    R       4      -       -           -
LGA    E       5      -       -           -
LGA    I       6      -       -           -
LGA    L       7      -       -           -
LGA    R       8      -       -           -
LGA    K       9      -       -           -
LGA    E      10      -       -           -
LGA    G      11      -       -           -
LGA    F      12      -       -           -
LGA    L      13      T       2          5.892
LGA    D      14      -       -           -
LGA    L      15      -       -           -
LGA    G      16      -       -           -
LGA    E      17      -       -           -
LGA    F      18      W       3          2.195
LGA    I      19      R       4          1.878
LGA    V      20      E       5          3.927
LGA    E      21      I       6          0.897
LGA    L      22      L       7          3.480
LGA    V      23      R       8           #
LGA    -       -      K       9           -
LGA    -       -      E      10           -
LGA    -       -      G      11           -
LGA    -       -      F      12           -
LGA    -       -      L      13           -
LGA    -       -      D      14           -
LGA    -       -      L      15           -
LGA    -       -      G      16           -
LGA    -       -      E      17           -
LGA    -       -      F      18           -
LGA    -       -      I      19           -
LGA    -       -      V      20           -
LGA    Y      24      E      21          1.574
LGA    I      25      L      22          3.053
LGA    -       -      V      23           -
LGA    -       -      Y      24           -
LGA    -       -      I      25           -
LGA    -       -      D      26           -
LGA    -       -      C      27           -
LGA    -       -      P      28           -
LGA    -       -      C      29           -
LGA    -       -      E      30           -
LGA    -       -      P      31           -
LGA    -       -      I      32           -
LGA    -       -      P      33           -
LGA    -       -      P      34           -
LGA    -       -      T      35           -
LGA    -       -      L      36           -
LGA    D      26      A      37          2.944
LGA    C      27      I      38           -
LGA    P      28      Y      39           -
LGA    C      29      D      40           -
LGA    E      30      K      41           -
LGA    P      31      K      42           -
LGA    I      32      G      43           -
LGA    P      33      D      44           #
LGA    P      34      E      45          1.271
LGA    T      35      W      46          5.144
LGA    L      36      Y      47          4.878
LGA    -       -      K      48           -
LGA    A      37      V      49           #
LGA    I      38      E      50           #
LGA    Y      39      E      51           -
LGA    -       -      A      52           -
LGA    -       -      P      53           -
LGA    -       -      N      54           -
LGA    -       -      V      55           -
LGA    -       -      Q      56           -
LGA    -       -      E      63           -
LGA    D      40      W      64          2.268
LGA    K      41      A      65          1.654
LGA    K      42      I      66          4.009
LGA    G      43      -       -           -
LGA    D      44      E      67          4.721
LGA    E      45      V      68          4.274
LGA    -       -      L      69           -
LGA    W      46      E      70          2.871
LGA    Y      47      R      71          2.527
LGA    -       -      I      72           -
LGA    -       -      R      73           -
LGA    -       -      D      74           -
LGA    K      48      G      75           #
LGA    -       -      E      76           -
LGA    -       -      N      77           -
LGA    -       -      V      78           -
LGA    -       -      K      79           -
LGA    -       -      L      80           -
LGA    V      49      V      81          5.448
LGA    E      50      S      82          3.178
LGA    E      51      L      83          3.026
LGA    -       -      D      84           -
LGA    -       -      G      85           -
LGA    A      52      P      86          3.189
LGA    P      53      A      87          3.281
LGA    N      54      P      88          2.042
LGA    V      55      P      89          3.818
LGA    Q      56      K      90          2.012
LGA    N      57      V      91          2.208
LGA    Y      58      M      92          0.576
LGA    R      59      K      93          0.719
LGA    E      60      R      94          1.216
LGA    A      61      L      95          1.638
LGA    V      62      S      96          1.286
LGA    E      63      L      97          1.892
LGA    W      64      A      98          3.127
LGA    A      65      L      99          2.588
LGA    I      66      Q     100          2.680
LGA    E      67      K     101          3.662
LGA    V      68      -       -           -
LGA    L      69      -       -           -
LGA    E      70      -       -           -
LGA    R      71      -       -           -
LGA    I      72      -       -           -
LGA    R      73      -       -           -
LGA    D      74      -       -           -
LGA    G      75      -       -           -
LGA    E      76      -       -           -
LGA    N      77      -       -           -
LGA    V      78      -       -           -
LGA    K      79      -       -           -
LGA    L      80      -       -           -
LGA    V      81      -       -           -
LGA    S      82      -       -           -
LGA    L      83      -       -           -
LGA    D      84      -       -           -
LGA    G      85      -       -           -
LGA    P      86      -       -           -
LGA    A      87      -       -           -
LGA    P      88      -       -           -
LGA    P      89      -       -           -
LGA    K      90      -       -           -
LGA    V      91      -       -           -
LGA    M      92      -       -           -
LGA    K      93      -       -           -
LGA    R      94      -       -           -
LGA    L      95      -       -           -
LGA    S      96      -       -           -
LGA    L      97      -       -           -
LGA    A      98      -       -           -
LGA    L      99      -       -           -
LGA    Q     100      -       -           -
LGA    K     101      -       -           -
LGA    L     102      -       -           -
LGA    T     103      -       -           -
LGA    E     104      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  104   94    5.0     38    3.11     5.26     26.109     1.184

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.012728 * X  +  -0.884148 * Y  +   0.467033 * Z  +  24.517914
  Y_new =   0.994763 * X  +   0.058569 * Y  +   0.083767 * Z  +  18.054754
  Z_new =  -0.101416 * X  +   0.463521 * Y  +   0.880263 * Z  +  16.744041 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.484678   -2.656915  [ DEG:    27.7700   -152.2300 ]
  Theta =   0.101591    3.040002  [ DEG:     5.8207    174.1793 ]
  Phi   =   1.558002   -1.583591  [ DEG:    89.2669    -90.7331 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0343TS599_5                                  
REMARK     2: T0343.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0343TS599_5.T0343.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  104   94   5.0   38   3.11    5.26  26.109
REMARK  ---------------------------------------------------------- 
MOLECULE T0343TS599_5
PFRMAT TS                                                                       
TARGET T0343                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      24.217  29.310  33.038  1.00  0.00              
ATOM      2  CA  THR     2      24.946  25.512  34.033  1.00  0.00              
ATOM      3  CA  TRP     3      25.928  28.805  36.481  1.00  0.00              
ATOM      4  CA  ARG     4      26.510  26.907  33.485  1.00  0.00              
ATOM      5  CA  GLU     5      30.276  26.853  33.850  1.00  0.00              
ATOM      6  CA  ILE     6      30.091  25.656  37.442  1.00  0.00              
ATOM      7  CA  LEU     7      27.625  22.882  36.484  1.00  0.00              
ATOM      8  CA  ARG     8      29.878  21.734  33.582  1.00  0.00              
ATOM      9  CA  LYS     9      33.014  21.626  35.760  1.00  0.00              
ATOM     10  CA  GLU    10      31.095  19.576  38.381  1.00  0.00              
ATOM     11  CA  GLY    11      29.767  17.096  35.836  1.00  0.00              
ATOM     12  CA  PHE    12      26.124  18.130  36.166  1.00  0.00              
ATOM     13  CA  LEU    13      24.993  18.415  32.573  1.00  0.00              
ATOM     14  CA  ASP    14      22.121  20.868  31.847  1.00  0.00              
ATOM     15  CA  LEU    15      19.931  19.917  28.926  1.00  0.00              
ATOM     16  CA  GLY    16      20.121  23.173  26.955  1.00  0.00              
ATOM     17  CA  GLU    17      23.900  23.284  27.433  1.00  0.00              
ATOM     18  CA  PHE    18      24.526  19.701  26.325  1.00  0.00              
ATOM     19  CA  ILE    19      22.456  20.188  23.192  1.00  0.00              
ATOM     20  CA  VAL    20      24.247  23.417  22.228  1.00  0.00              
ATOM     21  CA  GLU    21      27.653  21.807  22.675  1.00  0.00              
ATOM     22  CA  LEU    22      26.654  18.914  20.338  1.00  0.00              
ATOM     23  CA  VAL    23      24.886  20.869  17.620  1.00  0.00              
ATOM     24  CA  TYR    24      24.993  19.768  13.939  1.00  0.00              
ATOM     25  CA  ILE    25      23.961  22.147  11.371  1.00  0.00              
ATOM     26  CA  ASP    26      23.126  20.930   7.973  1.00  0.00              
ATOM     27  CA  CYS    27      23.758  23.325   5.156  1.00  0.00              
ATOM     28  CA  PRO    28      22.228  23.252   1.812  1.00  0.00              
ATOM     29  CA  CYS    29      24.753  22.249  -0.903  1.00  0.00              
ATOM     30  CA  GLU    30      22.652  19.825  -2.907  1.00  0.00              
ATOM     31  CA  PRO    31      23.062  16.189  -1.715  1.00  0.00              
ATOM     32  CA  ILE    32      23.226  16.698   2.008  1.00  0.00              
ATOM     33  CA  PRO    33      20.594  15.284   4.276  1.00  0.00              
ATOM     34  CA  PRO    34      22.064  12.168   5.977  1.00  0.00              
ATOM     35  CA  THR    35      20.605  12.965   9.362  1.00  0.00              
ATOM     36  CA  LEU    36      20.965  16.563   9.873  1.00  0.00              
ATOM     37  CA  ALA    37      20.558  18.007  13.323  1.00  0.00              
ATOM     38  CA  ILE    38      19.707  21.540  13.770  1.00  0.00              
ATOM     39  CA  TYR    39      19.925  23.010  17.231  1.00  0.00              
ATOM     40  CA  ASP    40      18.454  26.328  18.054  1.00  0.00              
ATOM     41  CA  LYS    41      20.365  27.939  20.863  1.00  0.00              
ATOM     42  CA  LYS    42      18.088  30.814  21.629  1.00  0.00              
ATOM     43  CA  GLY    43      14.875  28.862  21.859  1.00  0.00              
ATOM     44  CA  ASP    44      16.274  25.492  23.074  1.00  0.00              
ATOM     45  CA  GLU    45      14.763  23.852  19.960  1.00  0.00              
ATOM     46  CA  TRP    46      15.966  20.817  18.362  1.00  0.00              
ATOM     47  CA  TYR    47      15.238  20.267  14.702  1.00  0.00              
ATOM     48  CA  LYS    48      15.839  16.964  13.050  1.00  0.00              
ATOM     49  CA  VAL    49      16.053  16.848   9.377  1.00  0.00              
ATOM     50  CA  GLU    50      16.052  13.657   7.739  1.00  0.00              
ATOM     51  CA  GLU    51      15.651  14.204   4.039  1.00  0.00              
ATOM     52  CA  ALA    52      11.907  13.593   3.511  1.00  0.00              
ATOM     53  CA  PRO    53      11.063  12.093   6.897  1.00  0.00              
ATOM     54  CA  ASN    54      10.164   8.377   6.490  1.00  0.00              
ATOM     55  CA  VAL    55       9.795   6.947  10.000  1.00  0.00              
ATOM     56  CA  GLN    56      12.423   4.174   9.718  1.00  0.00              
ATOM     57  CA  ASN    57      15.006   6.725   8.509  1.00  0.00              
ATOM     58  CA  TYR    58      14.013   9.064  11.354  1.00  0.00              
ATOM     59  CA  ARG    59      14.310   6.219  13.896  1.00  0.00              
ATOM     60  CA  GLU    60      17.956   5.774  12.827  1.00  0.00              
ATOM     61  CA  ALA    61      18.459   9.534  13.265  1.00  0.00              
ATOM     62  CA  VAL    62      16.874   9.382  16.722  1.00  0.00              
ATOM     63  CA  GLU    63      19.091   6.552  17.992  1.00  0.00              
ATOM     64  CA  TRP    64      22.276   8.250  16.776  1.00  0.00              
ATOM     65  CA  ALA    65      21.131  11.469  18.481  1.00  0.00              
ATOM     66  CA  ILE    66      20.345   9.738  21.793  1.00  0.00              
ATOM     67  CA  GLU    67      23.736   7.988  21.940  1.00  0.00              
ATOM     68  CA  VAL    68      25.544  11.226  21.213  1.00  0.00              
ATOM     69  CA  LEU    69      23.611  13.041  23.915  1.00  0.00              
ATOM     70  CA  GLU    70      24.359  10.281  26.453  1.00  0.00              
ATOM     71  CA  ARG    71      28.067  10.550  25.670  1.00  0.00              
ATOM     72  CA  ILE    72      27.963  14.357  26.078  1.00  0.00              
ATOM     73  CA  ARG    73      26.202  14.054  29.442  1.00  0.00              
ATOM     74  CA  ASP    74      28.995  11.687  30.529  1.00  0.00              
ATOM     75  CA  GLY    75      31.902  13.828  29.526  1.00  0.00              
ATOM     76  CA  GLU    76      33.043  12.671  26.145  1.00  0.00              
ATOM     77  CA  ASN    77      34.125  15.872  24.347  1.00  0.00              
ATOM     78  CA  VAL    78      31.989  16.733  21.380  1.00  0.00              
ATOM     79  CA  LYS    79      32.829  19.776  19.232  1.00  0.00              
ATOM     80  CA  LEU    80      29.794  21.161  17.361  1.00  0.00              
ATOM     81  CA  VAL    81      30.191  22.807  14.010  1.00  0.00              
ATOM     82  CA  SER    82      27.380  24.476  12.177  1.00  0.00              
ATOM     83  CA  LEU    83      27.167  24.839   8.445  1.00  0.00              
ATOM     84  CA  ASP    84      24.972  27.680   7.180  1.00  0.00              
ATOM     85  CA  GLY    85      25.415  28.036   3.625  1.00  0.00              
ATOM     86  CA  PRO    86      25.960  26.941   0.199  1.00  0.00              
ATOM     87  CA  ALA    87      29.566  25.927  -0.523  1.00  0.00              
ATOM     88  CA  PRO    88      29.858  22.497  -1.705  1.00  0.00              
ATOM     89  CA  PRO    89      30.735  19.103  -0.900  1.00  0.00              
ATOM     90  CA  LYS    90      34.354  19.478   0.208  1.00  0.00              
ATOM     91  CA  VAL    91      33.327  21.869   3.012  1.00  0.00              
ATOM     92  CA  MET    92      30.613  19.494   4.182  1.00  0.00              
ATOM     93  CA  LYS    93      32.925  16.551   4.245  1.00  0.00              
ATOM     94  CA  ARG    94      35.544  18.426   6.304  1.00  0.00              
ATOM     95  CA  LEU    95      32.871  19.536   8.797  1.00  0.00              
ATOM     96  CA  SER    96      31.482  16.069   9.164  1.00  0.00              
ATOM     97  CA  LEU    97      34.955  14.532   9.828  1.00  0.00              
ATOM     98  CA  ALA    98      35.682  17.188  12.476  1.00  0.00              
ATOM     99  CA  LEU    99      32.321  16.487  14.180  1.00  0.00              
ATOM    100  CA  GLN   100      32.875  12.770  14.303  1.00  0.00              
ATOM    101  CA  LYS   101      36.277  13.273  15.807  1.00  0.00              
ATOM    102  CA  LEU   102      34.832  15.687  18.486  1.00  0.00              
ATOM    103  CA  THR   103      32.680  12.999  19.527  1.00  0.00              
ATOM    104  CA  GLU   104      36.149  15.303  18.989  1.00  0.00              
TER                                                                             
END
