
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   57 (   57),  selected   57 , name T0349TS599_4-D1
# Molecule2: number of CA atoms   57 (  873),  selected   57 , name T0349_D1.pdb
# PARAMETERS: T0349TS599_4-D1.T0349_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    R       2      R       2           -
LGA    E       3      E       3           -
LGA    L       4      L       4           -
LGA    L       5      L       5           -
LGA    R       6      -       -           -
LGA    T       7      -       -           -
LGA    N       8      -       -           -
LGA    D       9      -       -           -
LGA    A      10      -       -           -
LGA    V      11      -       -           -
LGA    L      12      -       -           -
LGA    L      13      R       6           #
LGA    S      14      T       7           -
LGA    A      15      N       8          3.622
LGA    V      16      D       9          5.022
LGA    G      17      -       -           -
LGA    A      18      A      10          4.250
LGA    L      19      V      11          4.221
LGA    -       -      L      12           -
LGA    L      20      L      13          0.953
LGA    D      21      S      14          2.292
LGA    G      22      -       -           -
LGA    A      23      -       -           -
LGA    D      24      A      15          3.483
LGA    I      25      V      16          3.060
LGA    G      26      G      17          1.173
LGA    H      27      A      18           #
LGA    -       -      L      19           -
LGA    -       -      L      20           -
LGA    -       -      D      21           -
LGA    -       -      G      22           -
LGA    -       -      A      23           -
LGA    -       -      D      24           -
LGA    -       -      I      25           -
LGA    -       -      G      26           -
LGA    -       -      H      27           -
LGA    L      28      L      28          4.317
LGA    -       -      V      29           -
LGA    -       -      P      45           -
LGA    -       -      R      46           -
LGA    -       -      R      47           -
LGA    -       -      V      48           -
LGA    V      29      L      49          1.761
LGA    P      45      -       -           -
LGA    R      46      -       -           -
LGA    R      47      -       -           -
LGA    V      48      -       -           -
LGA    L      49      -       -           -
LGA    V      50      V      50          3.845
LGA    H      51      H      51          3.786
LGA    E      52      E      52          4.234
LGA    D      53      D      53          3.050
LGA    D      54      D      54          1.520
LGA    L      55      L      55          0.886
LGA    A      56      A      56          1.158
LGA    G      57      G      57          0.771
LGA    A      58      A      58          0.963
LGA    R      59      R      59          1.597
LGA    R      60      R      60          1.458
LGA    L      61      L      61          1.253
LGA    L      62      L      62          2.107
LGA    T      63      T      63          2.566
LGA    D      64      D      64          1.614
LGA    A      65      A      65          1.988
LGA    -       -      G      66           -
LGA    G      66      L      67           #
LGA    L      67      A      68          2.586
LGA    A      68      H      69          4.598
LGA    H      69      E      70           -
LGA    E      70      L      71           -
LGA    L      71      R      72           -
LGA    R      72      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   57   57    5.0     29    2.87    68.97     37.912     0.976

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.599880 * X  +   0.006215 * Y  +  -0.800066 * Z  +   2.551451
  Y_new =   0.774297 * X  +   0.256366 * Y  +  -0.578568 * Z  +   0.805076
  Z_new =   0.201514 * X  +  -0.966560 * Y  +  -0.158601 * Z  +   2.230061 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.733435    1.408158  [ DEG:   -99.3185     80.6815 ]
  Theta =  -0.202903   -2.938690  [ DEG:   -11.6255   -168.3745 ]
  Phi   =   2.229945   -0.911648  [ DEG:   127.7664    -52.2336 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0349TS599_4-D1                               
REMARK     2: T0349_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0349TS599_4-D1.T0349_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   57   57   5.0   29   2.87   68.97  37.912
REMARK  ---------------------------------------------------------- 
MOLECULE T0349TS599_4-D1
PFRMAT TS                                                                       
TARGET T0349                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      -6.038 -11.468  -9.768  1.00  0.00              
ATOM      2  CA  ARG     2      -4.035 -14.551  -9.962  1.00  0.00              
ATOM      3  CA  GLU     3      -4.036 -11.458 -12.808  1.00  0.00              
ATOM      4  CA  LEU     4      -2.923  -9.209 -10.246  1.00  0.00              
ATOM      5  CA  LEU     5      -0.027 -11.446  -9.042  1.00  0.00              
ATOM      6  CA  ARG     6       1.201 -12.141 -12.553  1.00  0.00              
ATOM      7  CA  THR     7       1.251  -8.486 -13.661  1.00  0.00              
ATOM      8  CA  ASN     8       2.613  -7.083 -10.461  1.00  0.00              
ATOM      9  CA  ASP     9       0.156  -4.412  -9.572  1.00  0.00              
ATOM     10  CA  ALA    10      -3.607  -4.511  -9.223  1.00  0.00              
ATOM     11  CA  VAL    11      -4.868  -7.383  -7.069  1.00  0.00              
ATOM     12  CA  LEU    12      -1.872  -7.039  -4.732  1.00  0.00              
ATOM     13  CA  LEU    13      -2.250  -3.280  -4.097  1.00  0.00              
ATOM     14  CA  SER    14      -5.937  -3.712  -3.329  1.00  0.00              
ATOM     15  CA  ALA    15      -5.334  -6.654  -0.951  1.00  0.00              
ATOM     16  CA  VAL    16      -2.621  -4.710   0.927  1.00  0.00              
ATOM     17  CA  GLY    17      -4.957  -1.705   1.214  1.00  0.00              
ATOM     18  CA  ALA    18      -7.786  -3.887   2.543  1.00  0.00              
ATOM     19  CA  LEU    19      -5.458  -5.470   5.129  1.00  0.00              
ATOM     20  CA  LEU    20      -4.272  -1.997   6.238  1.00  0.00              
ATOM     21  CA  ASP    21      -7.894  -0.799   6.530  1.00  0.00              
ATOM     22  CA  GLY    22      -8.926  -3.805   8.649  1.00  0.00              
ATOM     23  CA  ALA    23      -6.008  -3.214  11.028  1.00  0.00              
ATOM     24  CA  ASP    24      -6.677   0.478  11.466  1.00  0.00              
ATOM     25  CA  ILE    25      -3.505   1.615   9.693  1.00  0.00              
ATOM     26  CA  GLY    26      -3.982   4.138   6.974  1.00  0.00              
ATOM     27  CA  HIS    27      -1.413   3.466   4.394  1.00  0.00              
ATOM     28  CA  LEU    28      -1.609   4.909   0.842  1.00  0.00              
ATOM     29  CA  VAL    29       1.367   4.500  -1.403  1.00  0.00              
ATOM     45  CA  PRO    45       3.293   0.215   8.482  1.00  0.00              
ATOM     46  CA  ARG    46       1.952   0.769  12.033  1.00  0.00              
ATOM     47  CA  ARG    47      -0.160   3.764  10.910  1.00  0.00              
ATOM     48  CA  VAL    48       1.570   5.331   7.928  1.00  0.00              
ATOM     49  CA  LEU    49      -0.432   7.681   5.768  1.00  0.00              
ATOM     50  CA  VAL    50       0.873   8.388   2.337  1.00  0.00              
ATOM     51  CA  HIS    51      -0.890  10.574  -0.297  1.00  0.00              
ATOM     52  CA  GLU    52       1.196  11.225  -3.362  1.00  0.00              
ATOM     53  CA  ASP    53       1.570  14.962  -3.092  1.00  0.00              
ATOM     54  CA  ASP    54       2.606  14.594   0.462  1.00  0.00              
ATOM     55  CA  LEU    55       5.269  11.887  -0.121  1.00  0.00              
ATOM     56  CA  ALA    56       7.830  13.787   1.865  1.00  0.00              
ATOM     57  CA  GLY    57       5.353  14.285   4.741  1.00  0.00              
ATOM     58  CA  ALA    58       4.450  10.597   4.738  1.00  0.00              
ATOM     59  CA  ARG    59       8.041   9.430   4.809  1.00  0.00              
ATOM     60  CA  ARG    60       8.775  11.739   7.687  1.00  0.00              
ATOM     61  CA  LEU    61       5.724  10.484   9.629  1.00  0.00              
ATOM     62  CA  LEU    62       6.657   6.841   9.177  1.00  0.00              
ATOM     63  CA  THR    63      10.262   7.504  10.356  1.00  0.00              
ATOM     64  CA  ASP    64       9.011   9.528  13.331  1.00  0.00              
ATOM     65  CA  ALA    65       6.746   6.628  14.306  1.00  0.00              
ATOM     66  CA  GLY    66       9.774   4.259  14.454  1.00  0.00              
ATOM     67  CA  LEU    67       8.824   1.724  11.984  1.00  0.00              
ATOM     68  CA  ALA    68      12.005   0.559  10.175  1.00  0.00              
ATOM     69  CA  HIS    69      13.675  -0.359  13.415  1.00  0.00              
ATOM     70  CA  GLU    70      10.650  -2.318  14.594  1.00  0.00              
ATOM     71  CA  LEU    71      10.194  -4.297  11.366  1.00  0.00              
ATOM     72  CA  ARG    72      13.888  -5.014  11.006  1.00  0.00              
TER                                                                             
END
