
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   87 (   87),  selected   87 , name T0358TS599_5
# Molecule2: number of CA atoms   66 ( 1047),  selected   66 , name T0358.pdb
# PARAMETERS: T0358TS599_5.T0358.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      G      10           -
LGA    T       2      P      11           -
LGA    Q       3      F      12           -
LGA    S       4      T      13           -
LGA    V       5      R      14           -
LGA    L       6      R      15           -
LGA    L       7      Q      16           -
LGA    P       8      A      17           -
LGA    P       9      Q      18           -
LGA    G      10      A      19           -
LGA    P      11      V      20           -
LGA    F      12      T      21           -
LGA    T      13      T      22           -
LGA    R      14      -       -           -
LGA    R      15      -       -           -
LGA    Q      16      -       -           -
LGA    A      17      -       -           -
LGA    Q      18      -       -           -
LGA    A      19      -       -           -
LGA    V      20      -       -           -
LGA    T      21      T      23           #
LGA    T      22      Y      24           -
LGA    T      23      -       -           -
LGA    Y      24      S      25           #
LGA    S      25      N      26           #
LGA    N      26      I      27           #
LGA    I      27      T      28          3.600
LGA    T      28      L      29          4.908
LGA    L      29      E      30          1.991
LGA    E      30      D      31          2.052
LGA    D      31      D      32          1.133
LGA    D      32      Q      33          2.677
LGA    -       -      G      34           -
LGA    Q      33      S      35          3.360
LGA    G      34      H      36          2.787
LGA    S      35      F      37          1.701
LGA    H      36      R      38          1.432
LGA    F      37      L      39          2.021
LGA    R      38      V      40          2.640
LGA    L      39      V      41          4.331
LGA    V      40      R      42          4.647
LGA    -       -      D      43           -
LGA    -       -      T      44           -
LGA    -       -      E      45           -
LGA    V      41      G      46          0.977
LGA    R      42      R      47           #
LGA    D      43      -       -           -
LGA    T      44      -       -           -
LGA    E      45      -       -           -
LGA    G      46      -       -           -
LGA    R      47      -       -           -
LGA    M      48      -       -           -
LGA    V      49      -       -           -
LGA    W      50      M      48          1.032
LGA    R      51      V      49          2.605
LGA    A      52      W      50          2.926
LGA    W      53      R      51          2.836
LGA    N      54      A      52          2.002
LGA    -       -      W      53           -
LGA    F      55      N      54          3.391
LGA    E      56      F      55          3.879
LGA    P      57      E      56           #
LGA    D      58      P      57           #
LGA    A      59      -       -           -
LGA    G      60      -       -           -
LGA    E      61      D      58          4.914
LGA    G      62      A      59          2.467
LGA    L      63      G      60          2.091
LGA    N      64      E      61          2.674
LGA    R      65      G      62          4.292
LGA    Y      66      L      63          4.688
LGA    I      67      N      64          4.732
LGA    R      68      R      65          4.981
LGA    T      69      Y      66           -
LGA    S      70      -       -           -
LGA    G      71      -       -           -
LGA    I      72      -       -           -
LGA    R      73      -       -           -
LGA    T      74      -       -           -
LGA    D      75      -       -           -
LGA    T      76      I      67          4.974
LGA    A      77      R      68          1.851
LGA    T      78      T      69          2.138
LGA    R      79      S      70          2.427
LGA    L      80      G      71          2.604
LGA    E      81      I      72           -
LGA    H      82      -       -           -
LGA    H      83      R      73          4.303
LGA    H      84      T      74           -
LGA    H      85      D      75           -
LGA    H      86      -       -           -
LGA    H      87      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   87   66    5.0     36    3.24     8.33     33.193     1.077

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.932179 * X  +  -0.058826 * Y  +  -0.357185 * Z  +  -2.945220
  Y_new =   0.318375 * X  +  -0.602809 * Y  +  -0.731614 * Z  +  -2.730893
  Z_new =  -0.172276 * X  +  -0.795714 * Y  +   0.580655 * Z  +   3.719900 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.940396    2.201197  [ DEG:   -53.8807    126.1193 ]
  Theta =   0.173140    2.968453  [ DEG:     9.9202    170.0798 ]
  Phi   =   2.812476   -0.329117  [ DEG:   161.1430    -18.8570 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0358TS599_5                                  
REMARK     2: T0358.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0358TS599_5.T0358.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   87   66   5.0   36   3.24    8.33  33.193
REMARK  ---------------------------------------------------------- 
MOLECULE T0358TS599_5
PFRMAT TS                                                                       
TARGET T0358                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      -7.618  10.362  -1.829  1.00  0.00              
ATOM      2  CA  THR     2      -8.693   7.301  -3.957  1.00  0.00              
ATOM      3  CA  GLN     3     -11.260   7.663  -1.357  1.00  0.00              
ATOM      4  CA  SER     4     -11.619   7.952   2.518  1.00  0.00              
ATOM      5  CA  VAL     5      -9.922   4.877   3.832  1.00  0.00              
ATOM      6  CA  LEU     6     -11.157   2.989   6.806  1.00  0.00              
ATOM      7  CA  LEU     7      -8.707   1.040   8.869  1.00  0.00              
ATOM      8  CA  PRO     8     -10.033  -1.138  11.627  1.00  0.00              
ATOM      9  CA  PRO     9      -7.290  -1.032  14.322  1.00  0.00              
ATOM     10  CA  GLY    10      -7.581  -4.651  15.335  1.00  0.00              
ATOM     11  CA  PRO    11      -4.359  -6.417  16.087  1.00  0.00              
ATOM     12  CA  PHE    12      -4.279  -9.173  13.599  1.00  0.00              
ATOM     13  CA  THR    13      -3.206 -12.764  13.787  1.00  0.00              
ATOM     14  CA  ARG    14      -1.805 -14.509  10.711  1.00  0.00              
ATOM     15  CA  ARG    15      -5.112 -16.230   9.777  1.00  0.00              
ATOM     16  CA  GLN    16      -6.805 -12.776   9.736  1.00  0.00              
ATOM     17  CA  ALA    17      -4.063 -11.302   7.527  1.00  0.00              
ATOM     18  CA  GLN    18      -4.435 -14.233   5.055  1.00  0.00              
ATOM     19  CA  ALA    19      -8.210 -13.733   4.950  1.00  0.00              
ATOM     20  CA  VAL    20      -7.758 -10.031   4.109  1.00  0.00              
ATOM     21  CA  THR    21      -5.164 -11.004   1.467  1.00  0.00              
ATOM     22  CA  THR    22      -7.438 -13.618  -0.088  1.00  0.00              
ATOM     23  CA  THR    23     -10.385 -11.187  -0.267  1.00  0.00              
ATOM     24  CA  TYR    24      -8.562  -8.270  -1.937  1.00  0.00              
ATOM     25  CA  SER    25     -10.823  -7.254  -4.786  1.00  0.00              
ATOM     26  CA  ASN    26     -10.809  -3.619  -5.011  1.00  0.00              
ATOM     27  CA  ILE    27      -7.619  -1.808  -5.267  1.00  0.00              
ATOM     28  CA  THR    28      -7.793   1.912  -5.767  1.00  0.00              
ATOM     29  CA  LEU    29      -4.717   3.926  -6.503  1.00  0.00              
ATOM     30  CA  GLU    30      -4.911   7.625  -6.101  1.00  0.00              
ATOM     31  CA  ASP    31      -2.204   9.793  -7.392  1.00  0.00              
ATOM     32  CA  ASP    32      -1.962  13.007  -5.678  1.00  0.00              
ATOM     33  CA  GLN    33       1.691  13.654  -5.145  1.00  0.00              
ATOM     34  CA  GLY    34       2.121  11.608  -1.917  1.00  0.00              
ATOM     35  CA  SER    35       0.568   8.386  -3.102  1.00  0.00              
ATOM     36  CA  HIS    36      -2.686   7.112  -1.640  1.00  0.00              
ATOM     37  CA  PHE    37      -3.400   3.419  -1.836  1.00  0.00              
ATOM     38  CA  ARG    38      -6.905   2.234  -1.024  1.00  0.00              
ATOM     39  CA  LEU    39      -7.419  -1.514  -0.735  1.00  0.00              
ATOM     40  CA  VAL    40     -11.027  -2.763  -0.640  1.00  0.00              
ATOM     41  CA  VAL    41     -11.511  -6.184   0.842  1.00  0.00              
ATOM     42  CA  ARG    42     -14.799  -7.948   0.537  1.00  0.00              
ATOM     43  CA  ASP    43     -15.407 -10.789   2.949  1.00  0.00              
ATOM     44  CA  THR    44     -17.435 -13.772   1.785  1.00  0.00              
ATOM     45  CA  GLU    45     -20.393 -12.424   3.745  1.00  0.00              
ATOM     46  CA  GLY    46     -20.476  -9.145   1.904  1.00  0.00              
ATOM     47  CA  ARG    47     -18.806  -7.109   4.684  1.00  0.00              
ATOM     48  CA  MET    48     -16.595  -4.397   3.371  1.00  0.00              
ATOM     49  CA  VAL    49     -13.312  -3.930   4.793  1.00  0.00              
ATOM     50  CA  TRP    50     -11.393  -0.866   3.932  1.00  0.00              
ATOM     51  CA  ARG    51      -7.666  -0.863   4.255  1.00  0.00              
ATOM     52  CA  ALA    52      -5.769   2.219   3.758  1.00  0.00              
ATOM     53  CA  TRP    53      -2.257   1.846   2.782  1.00  0.00              
ATOM     54  CA  ASN    54      -0.112   4.846   2.154  1.00  0.00              
ATOM     55  CA  PHE    55       2.303   4.693  -0.751  1.00  0.00              
ATOM     56  CA  GLU    56       5.067   7.030   0.225  1.00  0.00              
ATOM     57  CA  PRO    57       8.025   6.275  -2.027  1.00  0.00              
ATOM     58  CA  ASP    58      10.406   4.562   0.426  1.00  0.00              
ATOM     59  CA  ALA    59       7.868   1.716   0.649  1.00  0.00              
ATOM     60  CA  GLY    60       9.489  -0.706   3.021  1.00  0.00              
ATOM     61  CA  GLU    61      10.281   1.894   5.713  1.00  0.00              
ATOM     62  CA  GLY    62       6.727   3.234   5.641  1.00  0.00              
ATOM     63  CA  LEU    63       5.116  -0.235   5.805  1.00  0.00              
ATOM     64  CA  ASN    64       7.289  -1.237   8.697  1.00  0.00              
ATOM     65  CA  ARG    65       6.429   1.956  10.525  1.00  0.00              
ATOM     66  CA  TYR    66       2.699   1.400   9.893  1.00  0.00              
ATOM     67  CA  ILE    67       2.715  -2.151  11.101  1.00  0.00              
ATOM     68  CA  ARG    68       4.567  -1.251  14.270  1.00  0.00              
ATOM     69  CA  THR    69       2.155   1.539  15.053  1.00  0.00              
ATOM     70  CA  SER    70      -0.896  -0.580  14.588  1.00  0.00              
ATOM     71  CA  GLY    71       0.318  -3.411  16.775  1.00  0.00              
ATOM     72  CA  ILE    72       1.060  -6.065  14.141  1.00  0.00              
ATOM     73  CA  ARG    73       4.029  -8.272  14.790  1.00  0.00              
ATOM     74  CA  THR    74       7.099  -8.718  12.685  1.00  0.00              
ATOM     75  CA  ASP    75       6.190 -12.083  11.053  1.00  0.00              
ATOM     76  CA  THR    76       2.875 -10.641   9.791  1.00  0.00              
ATOM     77  CA  ALA    77       4.268  -7.378   8.352  1.00  0.00              
ATOM     78  CA  THR    78       6.968  -9.160   6.321  1.00  0.00              
ATOM     79  CA  ARG    79       4.441 -11.594   4.864  1.00  0.00              
ATOM     80  CA  LEU    80       1.999  -8.791   3.876  1.00  0.00              
ATOM     81  CA  GLU    81       4.694  -6.743   2.215  1.00  0.00              
ATOM     82  CA  HIS    82       6.218  -9.434   0.077  1.00  0.00              
ATOM     83  CA  HIS    83       3.090 -10.841  -1.641  1.00  0.00              
ATOM     84  CA  HIS    84       2.584  -7.286  -2.888  1.00  0.00              
ATOM     85  CA  HIS    85       6.482  -6.079  -3.431  1.00  0.00              
ATOM     86  CA  HIS    86       8.899  -3.530  -4.185  1.00  0.00              
ATOM     87  CA  HIS    87      11.597  -3.021  -1.621  1.00  0.00              
TER                                                                             
END
