
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   65 (   65),  selected   65 , name T0358TS599_5-D1
# Molecule2: number of CA atoms   65 ( 1035),  selected   65 , name T0358_D1.pdb
# PARAMETERS: T0358TS599_5-D1.T0358_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    G      10      G      10           -
LGA    P      11      P      11           -
LGA    F      12      F      12           -
LGA    T      13      T      13           -
LGA    R      14      R      14           -
LGA    R      15      R      15           -
LGA    Q      16      Q      16           -
LGA    A      17      A      17           -
LGA    Q      18      Q      18           -
LGA    A      19      A      19           -
LGA    V      20      -       -           -
LGA    T      21      V      20          4.732
LGA    -       -      T      21           -
LGA    -       -      T      22           -
LGA    -       -      T      23           -
LGA    T      22      Y      24          1.624
LGA    T      23      S      25          3.646
LGA    Y      24      N      26          3.801
LGA    S      25      I      27          4.144
LGA    N      26      T      28          2.249
LGA    I      27      L      29          0.756
LGA    T      28      E      30          1.707
LGA    L      29      D      31          4.444
LGA    E      30      D      32          2.835
LGA    D      31      Q      33          2.157
LGA    D      32      G      34           #
LGA    Q      33      -       -           -
LGA    G      34      -       -           -
LGA    S      35      S      35          3.793
LGA    H      36      H      36          2.304
LGA    F      37      F      37          1.342
LGA    R      38      R      38          1.945
LGA    L      39      L      39          1.292
LGA    V      40      V      40          2.071
LGA    V      41      V      41          2.488
LGA    R      42      R      42          2.404
LGA    D      43      D      43          1.152
LGA    T      44      T      44          1.024
LGA    E      45      E      45          3.581
LGA    G      46      G      46          3.763
LGA    R      47      R      47          2.501
LGA    M      48      M      48          1.772
LGA    V      49      V      49          2.274
LGA    W      50      W      50          3.359
LGA    R      51      R      51          1.441
LGA    A      52      A      52          2.008
LGA    W      53      W      53          1.177
LGA    N      54      N      54          3.169
LGA    F      55      F      55          3.145
LGA    E      56      -       -           -
LGA    P      57      -       -           -
LGA    D      58      -       -           -
LGA    A      59      -       -           -
LGA    G      60      -       -           -
LGA    E      61      -       -           -
LGA    G      62      -       -           -
LGA    L      63      E      56          4.954
LGA    N      64      P      57          4.437
LGA    R      65      D      58          4.480
LGA    Y      66      A      59          4.808
LGA    I      67      G      60           #
LGA    R      68      E      61           #
LGA    T      69      -       -           -
LGA    S      70      G      62           #
LGA    G      71      L      63           -
LGA    I      72      N      64           #
LGA    R      73      R      65           -
LGA    T      74      Y      66           -
LGA    -       -      I      67           -
LGA    -       -      R      68           -
LGA    -       -      T      69           -
LGA    -       -      S      70           -
LGA    -       -      G      71           -
LGA    -       -      I      72           -
LGA    -       -      R      73           -
LGA    -       -      T      74           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   65   65    5.0     36    3.00    58.33     35.227     1.161

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.991867 * X  +   0.034121 * Y  +  -0.122622 * Z  +   1.985754
  Y_new =   0.076633 * X  +  -0.609125 * Y  +  -0.789363 * Z  +   2.465491
  Z_new =  -0.101626 * X  +  -0.792340 * Y  +   0.601556 * Z  +   2.653499 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.921424    2.220168  [ DEG:   -52.7937    127.2063 ]
  Theta =   0.101801    3.039791  [ DEG:     5.8328    174.1672 ]
  Phi   =   3.064485   -0.077108  [ DEG:   175.5820     -4.4180 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0358TS599_5-D1                               
REMARK     2: T0358_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0358TS599_5-D1.T0358_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   65   65   5.0   36   3.00   58.33  35.227
REMARK  ---------------------------------------------------------- 
MOLECULE T0358TS599_5-D1
PFRMAT TS                                                                       
TARGET T0358                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM     10  CA  GLY    10      -1.178  -0.385  14.568  1.00  0.00              
ATOM     11  CA  PRO    11       2.425  -1.292  15.072  1.00  0.00              
ATOM     12  CA  PHE    12       3.003  -3.976  12.571  1.00  0.00              
ATOM     13  CA  THR    13       4.939  -7.190  12.660  1.00  0.00              
ATOM     14  CA  ARG    14       6.500  -8.576   9.481  1.00  0.00              
ATOM     15  CA  ARG    15       3.660 -11.070   8.784  1.00  0.00              
ATOM     16  CA  GLN    16       1.170  -8.141   8.885  1.00  0.00              
ATOM     17  CA  ALA    17       3.296  -6.066   6.488  1.00  0.00              
ATOM     18  CA  GLN    18       3.479  -9.031   4.035  1.00  0.00              
ATOM     19  CA  ALA    19      -0.299  -9.477   4.210  1.00  0.00              
ATOM     20  CA  VAL    20      -0.836  -5.790   3.358  1.00  0.00              
ATOM     21  CA  THR    21       1.718  -6.128   0.527  1.00  0.00              
ATOM     22  CA  THR    22       0.053  -9.242  -0.870  1.00  0.00              
ATOM     23  CA  THR    23      -3.408  -7.615  -0.820  1.00  0.00              
ATOM     24  CA  TYR    24      -2.486  -4.361  -2.604  1.00  0.00              
ATOM     25  CA  SER    25      -5.129  -3.970  -5.273  1.00  0.00              
ATOM     26  CA  ASN    26      -6.028  -0.447  -5.480  1.00  0.00              
ATOM     27  CA  ILE    27      -3.410   2.090  -5.961  1.00  0.00              
ATOM     28  CA  THR    28      -4.533   5.646  -6.427  1.00  0.00              
ATOM     29  CA  LEU    29      -2.110   8.346  -7.377  1.00  0.00              
ATOM     30  CA  GLU    30      -3.180  11.888  -6.943  1.00  0.00              
ATOM     31  CA  ASP    31      -1.193  14.639  -8.418  1.00  0.00              
ATOM     32  CA  ASP    32      -1.627  17.836  -6.709  1.00  0.00              
ATOM     33  CA  GLN    33       1.782  19.370  -6.443  1.00  0.00              
ATOM     34  CA  GLY    34       2.936  17.535  -3.267  1.00  0.00              
ATOM     35  CA  SER    35       2.145  14.014  -4.350  1.00  0.00              
ATOM     36  CA  HIS    36      -0.580  11.998  -2.660  1.00  0.00              
ATOM     37  CA  PHE    37      -0.373   8.240  -2.823  1.00  0.00              
ATOM     38  CA  ARG    38      -3.409   6.239  -1.761  1.00  0.00              
ATOM     39  CA  LEU    39      -2.961   2.484  -1.454  1.00  0.00              
ATOM     40  CA  VAL    40      -6.132   0.386  -1.100  1.00  0.00              
ATOM     41  CA  VAL    41      -5.649  -3.029   0.396  1.00  0.00              
ATOM     42  CA  ARG    42      -8.413  -5.552   0.323  1.00  0.00              
ATOM     43  CA  ASP    43      -8.126  -8.424   2.759  1.00  0.00              
ATOM     44  CA  THR    44      -9.434 -11.830   1.732  1.00  0.00              
ATOM     45  CA  GLU    45     -12.483 -11.225   3.911  1.00  0.00              
ATOM     46  CA  GLY    46     -13.506  -8.093   2.098  1.00  0.00              
ATOM     47  CA  ARG    47     -12.192  -5.672   4.758  1.00  0.00              
ATOM     48  CA  MET    48     -10.820  -2.516   3.301  1.00  0.00              
ATOM     49  CA  VAL    49      -7.659  -1.236   4.479  1.00  0.00              
ATOM     50  CA  TRP    50      -6.623   2.195   3.496  1.00  0.00              
ATOM     51  CA  ARG    51      -2.998   3.120   3.544  1.00  0.00              
ATOM     52  CA  ALA    52      -1.962   6.568   2.924  1.00  0.00              
ATOM     53  CA  TRP    53       1.454   7.058   1.691  1.00  0.00              
ATOM     54  CA  ASN    54       2.741  10.486   0.922  1.00  0.00              
ATOM     55  CA  PHE    55       4.902  10.894  -2.152  1.00  0.00              
ATOM     56  CA  GLU    56       7.068  13.852  -1.371  1.00  0.00              
ATOM     57  CA  PRO    57       9.949  13.820  -3.838  1.00  0.00              
ATOM     58  CA  ASP    58      12.850  12.779  -1.575  1.00  0.00              
ATOM     59  CA  ALA    59      11.116   9.398  -1.181  1.00  0.00              
ATOM     60  CA  GLY    60      13.452   7.481   1.053  1.00  0.00              
ATOM     61  CA  GLU    61      13.771  10.231   3.693  1.00  0.00              
ATOM     62  CA  GLY    62      10.001  10.654   3.889  1.00  0.00              
ATOM     63  CA  LEU    63       9.311   6.897   4.154  1.00  0.00              
ATOM     64  CA  ASN    64      11.869   6.500   6.872  1.00  0.00              
ATOM     65  CA  ARG    65      10.383   9.406   8.775  1.00  0.00              
ATOM     66  CA  TYR    66       6.869   7.940   8.416  1.00  0.00              
ATOM     67  CA  ILE    67       7.848   4.519   9.602  1.00  0.00              
ATOM     68  CA  ARG    68       9.646   5.889  12.630  1.00  0.00              
ATOM     69  CA  THR    69       6.683   8.009  13.603  1.00  0.00              
ATOM     70  CA  SER    70       4.224   5.198  13.352  1.00  0.00              
ATOM     71  CA  GLY    71       6.253   2.782  15.429  1.00  0.00              
ATOM     72  CA  ILE    72       7.435   0.358  12.735  1.00  0.00              
ATOM     73  CA  ARG    73      10.896  -1.041  13.153  1.00  0.00              
ATOM     74  CA  THR    74      13.820  -0.744  10.825  1.00  0.00              
TER                                                                             
END
