
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0369TS599_1
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_1.T0369.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           #
LGA    -       -      T       2           -
LGA    -       -      D       3           -
LGA    -       -      W       4           -
LGA    -       -      Q       5           -
LGA    T       2      Q       6          3.663
LGA    D       3      A       7          2.380
LGA    W       4      L       8          2.456
LGA    Q       5      D       9          2.679
LGA    Q       6      R      10          2.497
LGA    A       7      H      11          1.985
LGA    L       8      V      12          2.082
LGA    D       9      G      13          1.890
LGA    R      10      V      14          1.048
LGA    H      11      G      15          1.070
LGA    V      12      V      16          1.765
LGA    G      13      R      17          1.207
LGA    V      14      T      18          1.027
LGA    G      15      T      19          2.090
LGA    V      16      R      20          2.261
LGA    R      17      D      21          1.847
LGA    T      18      L      22          2.888
LGA    T      19      I      23          3.695
LGA    R      20      R      24          3.270
LGA    D      21      L      25          4.183
LGA    L      22      I      26          5.133
LGA    I      23      Q      27          4.846
LGA    R      24      -       -           -
LGA    L      25      -       -           -
LGA    I      26      -       -           -
LGA    Q      27      -       -           -
LGA    P      28      -       -           -
LGA    E      29      -       -           -
LGA    D      30      -       -           -
LGA    W      31      -       -           -
LGA    D      32      P      28          4.030
LGA    K      33      E      29          4.019
LGA    R      34      D      30          4.653
LGA    P      35      W      31          4.136
LGA    I      36      D      32           #
LGA    -       -      K      33           -
LGA    -       -      R      34           -
LGA    -       -      P      35           -
LGA    -       -      I      36           -
LGA    -       -      S      37           -
LGA    -       -      G      38           -
LGA    -       -      K      39           -
LGA    -       -      R      40           -
LGA    -       -      S      41           -
LGA    -       -      V      42           -
LGA    S      37      Y      43          2.631
LGA    G      38      E      44          2.457
LGA    -       -      V      45           -
LGA    K      39      A      46          0.084
LGA    R      40      V      47          0.318
LGA    S      41      H      48          1.642
LGA    V      42      L      49          2.215
LGA    Y      43      A      50          2.119
LGA    E      44      V      51          1.696
LGA    V      45      L      52          2.351
LGA    A      46      L      53          2.788
LGA    V      47      E      54          2.017
LGA    H      48      A      55          0.983
LGA    L      49      D      56          0.770
LGA    A      50      L      57          2.972
LGA    V      51      R      58          4.048
LGA    L      52      I      59          3.998
LGA    L      53      A      60          3.442
LGA    E      54      T      61           #
LGA    -       -      G      62           -
LGA    -       -      A      63           -
LGA    -       -      T      64           -
LGA    -       -      A      65           -
LGA    -       -      D      66           -
LGA    -       -      E      67           -
LGA    -       -      M      68           -
LGA    -       -      A      69           -
LGA    -       -      Q      70           -
LGA    -       -      F      71           -
LGA    -       -      Y      72           -
LGA    -       -      A      73           -
LGA    -       -      V      74           -
LGA    -       -      P      75           -
LGA    -       -      V      76           -
LGA    -       -      L      77           -
LGA    -       -      P      78           -
LGA    -       -      E      79           -
LGA    -       -      Q      80           -
LGA    -       -      L      81           -
LGA    -       -      V      82           -
LGA    -       -      D      83           -
LGA    -       -      R      84           -
LGA    -       -      L      85           -
LGA    -       -      D      86           -
LGA    -       -      Q      87           -
LGA    -       -      S      88           -
LGA    -       -      W      89           -
LGA    -       -      Q      90           -
LGA    -       -      Y      91           -
LGA    -       -      Y      92           -
LGA    -       -      Q      93           -
LGA    -       -      D      94           -
LGA    A      55      R      95           #
LGA    -       -      L      96           -
LGA    -       -      M      97           -
LGA    -       -      A      98           -
LGA    -       -      D      99           -
LGA    D      56      F     100          2.370
LGA    L      57      S     101          3.751
LGA    R      58      -       -           -
LGA    I      59      -       -           -
LGA    A      60      -       -           -
LGA    T      61      -       -           -
LGA    G      62      -       -           -
LGA    A      63      -       -           -
LGA    T      64      -       -           -
LGA    A      65      -       -           -
LGA    D      66      -       -           -
LGA    E      67      -       -           -
LGA    M      68      -       -           -
LGA    A      69      -       -           -
LGA    Q      70      -       -           -
LGA    F      71      -       -           -
LGA    Y      72      T     102          4.587
LGA    A      73      -       -           -
LGA    V      74      -       -           -
LGA    P      75      E     103          3.745
LGA    V      76      T     104           #
LGA    -       -      T     105           -
LGA    -       -      Y     106           -
LGA    -       -      W     107           -
LGA    -       -      G     108           -
LGA    -       -      V     109           -
LGA    -       -      T     110           -
LGA    -       -      D     111           -
LGA    L      77      S     112          2.742
LGA    P      78      T     113          4.304
LGA    E      79      T     114          4.576
LGA    Q      80      G     115          3.304
LGA    L      81      W     116          2.926
LGA    -       -      L     117           -
LGA    V      82      L     118          2.510
LGA    D      83      E     119          3.433
LGA    R      84      A     120          4.842
LGA    -       -      A     121           -
LGA    -       -      V     122           -
LGA    L      85      H     123          1.894
LGA    D      86      L     124          3.252
LGA    -       -      Y     125           -
LGA    Q      87      H     126          2.387
LGA    S      88      H     127          3.104
LGA    W      89      R     128          3.032
LGA    Q      90      S     129          2.657
LGA    Y      91      Q     130          2.225
LGA    Y      92      L     131          2.695
LGA    Q      93      L     132          2.906
LGA    D      94      D     133          2.515
LGA    R      95      Y     134          2.130
LGA    L      96      L     135          2.800
LGA    M      97      N     136          3.167
LGA    A      98      L     137          2.674
LGA    D      99      L     138          2.315
LGA    F     100      G     139          3.742
LGA    S     101      Y     140          3.534
LGA    T     102      D     141           -
LGA    E     103      -       -           -
LGA    T     104      -       -           -
LGA    T     105      I     142           #
LGA    Y     106      K     143           -
LGA    W     107      L     144           -
LGA    G     108      D     145           -
LGA    V     109      L     146           -
LGA    T     110      F     147           -
LGA    D     111      -       -           -
LGA    S     112      -       -           -
LGA    T     113      -       -           -
LGA    T     114      -       -           -
LGA    G     115      -       -           -
LGA    W     116      -       -           -
LGA    L     117      -       -           -
LGA    L     118      -       -           -
LGA    E     119      -       -           -
LGA    A     120      -       -           -
LGA    A     121      -       -           -
LGA    V     122      -       -           -
LGA    H     123      -       -           -
LGA    L     124      -       -           -
LGA    Y     125      -       -           -
LGA    H     126      -       -           -
LGA    H     127      -       -           -
LGA    R     128      -       -           -
LGA    S     129      -       -           -
LGA    Q     130      -       -           -
LGA    L     131      -       -           -
LGA    L     132      -       -           -
LGA    D     133      -       -           -
LGA    Y     134      -       -           -
LGA    L     135      -       -           -
LGA    N     136      -       -           -
LGA    L     137      -       -           -
LGA    L     138      -       -           -
LGA    G     139      -       -           -
LGA    Y     140      -       -           -
LGA    D     141      -       -           -
LGA    I     142      -       -           -
LGA    K     143      -       -           -
LGA    L     144      -       -           -
LGA    D     145      -       -           -
LGA    L     146      -       -           -
LGA    F     147      -       -           -
LGA    E     148      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  148  147    5.0     72    2.98     5.56     29.514     2.338

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.676316 * X  +   0.145597 * Y  +   0.722079 * Z  +   9.159282
  Y_new =   0.736608 * X  +   0.130495 * Y  +   0.663612 * Z  +   0.198473
  Z_new =   0.002392 * X  +   0.980700 * Y  +  -0.195503 * Z  + -11.152143 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.767568   -1.374025  [ DEG:   101.2742    -78.7258 ]
  Theta =  -0.002392   -3.139200  [ DEG:    -0.1371   -179.8629 ]
  Phi   =   2.313549   -0.828044  [ DEG:   132.5566    -47.4434 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_1                                  
REMARK     2: T0369.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_1.T0369.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  148  147   5.0   72   2.98    5.56  29.514
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_1
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      18.384  11.264  -6.195  1.00  0.00              
ATOM      2  CA  THR     2      17.320  11.535  -2.134  1.00  0.00              
ATOM      3  CA  ASP     3      14.002  11.016   0.395  1.00  0.00              
ATOM      4  CA  TRP     4      11.885   9.870  -3.056  1.00  0.00              
ATOM      5  CA  GLN     5      14.688   7.332  -3.571  1.00  0.00              
ATOM      6  CA  GLN     6      14.974   5.879  -0.112  1.00  0.00              
ATOM      7  CA  ALA     7      11.354   4.767   0.197  1.00  0.00              
ATOM      8  CA  LEU     8      11.396   2.992  -3.198  1.00  0.00              
ATOM      9  CA  ASP     9      14.636   1.099  -2.484  1.00  0.00              
ATOM     10  CA  ARG    10      13.286  -0.069   0.878  1.00  0.00              
ATOM     11  CA  HIS    11      10.056  -1.311  -0.724  1.00  0.00              
ATOM     12  CA  VAL    12      11.904  -3.258  -3.410  1.00  0.00              
ATOM     13  CA  GLY    13      14.123  -4.890  -0.760  1.00  0.00              
ATOM     14  CA  VAL    14      11.099  -6.191   1.167  1.00  0.00              
ATOM     15  CA  GLY    15       9.324  -7.790  -1.829  1.00  0.00              
ATOM     16  CA  VAL    16      12.580  -9.566  -2.831  1.00  0.00              
ATOM     17  CA  ARG    17      13.216 -10.939   0.682  1.00  0.00              
ATOM     18  CA  THR    18       9.668 -12.315   0.991  1.00  0.00              
ATOM     19  CA  THR    19       9.961 -14.095  -2.371  1.00  0.00              
ATOM     20  CA  ARG    20      13.272 -15.694  -1.340  1.00  0.00              
ATOM     21  CA  ASP    21      11.756 -16.861   1.951  1.00  0.00              
ATOM     22  CA  LEU    22       8.860 -18.485   0.101  1.00  0.00              
ATOM     23  CA  ILE    23      11.355 -20.209  -2.244  1.00  0.00              
ATOM     24  CA  ARG    24      13.380 -21.406   0.686  1.00  0.00              
ATOM     25  CA  LEU    25      10.321 -22.915   2.528  1.00  0.00              
ATOM     26  CA  ILE    26       9.399 -24.769  -0.727  1.00  0.00              
ATOM     27  CA  GLN    27      12.762 -26.363  -1.132  1.00  0.00              
ATOM     28  CA  PRO    28      14.052 -25.465  -4.528  1.00  0.00              
ATOM     29  CA  GLU    29      13.831 -29.046  -5.674  1.00  0.00              
ATOM     30  CA  ASP    30      10.066 -29.427  -5.037  1.00  0.00              
ATOM     31  CA  TRP    31       9.144 -26.406  -7.035  1.00  0.00              
ATOM     32  CA  ASP    32       6.145 -25.380  -9.034  1.00  0.00              
ATOM     33  CA  LYS    33       6.602 -22.874 -11.791  1.00  0.00              
ATOM     34  CA  ARG    34       4.246 -19.949 -11.862  1.00  0.00              
ATOM     35  CA  PRO    35       4.560 -17.075 -14.273  1.00  0.00              
ATOM     36  CA  ILE    36       5.074 -13.822 -12.269  1.00  0.00              
ATOM     37  CA  SER    37       2.579 -11.370 -13.666  1.00  0.00              
ATOM     38  CA  GLY    38       1.684  -9.377 -10.602  1.00  0.00              
ATOM     39  CA  LYS    39       5.275  -8.623  -9.519  1.00  0.00              
ATOM     40  CA  ARG    40       6.083  -7.513 -12.999  1.00  0.00              
ATOM     41  CA  SER    41       3.193  -5.141 -13.471  1.00  0.00              
ATOM     42  CA  VAL    42       3.935  -3.346 -10.192  1.00  0.00              
ATOM     43  CA  TYR    43       7.643  -2.774 -10.833  1.00  0.00              
ATOM     44  CA  GLU    44       6.843  -1.452 -14.275  1.00  0.00              
ATOM     45  CA  VAL    45       4.192   0.947 -13.119  1.00  0.00              
ATOM     46  CA  ALA    46       6.402   2.390 -10.451  1.00  0.00              
ATOM     47  CA  VAL    47       9.374   2.900 -12.767  1.00  0.00              
ATOM     48  CA  HIS    48       7.239   4.532 -15.452  1.00  0.00              
ATOM     49  CA  LEU    49       5.551   6.907 -13.070  1.00  0.00              
ATOM     50  CA  ALA    50       8.853   8.079 -11.492  1.00  0.00              
ATOM     51  CA  VAL    51      10.467   8.758 -14.874  1.00  0.00              
ATOM     52  CA  LEU    52       7.490  10.723 -16.301  1.00  0.00              
ATOM     53  CA  LEU    53       7.243  12.829 -13.156  1.00  0.00              
ATOM     54  CA  GLU    54      10.842  13.810 -12.496  1.00  0.00              
ATOM     55  CA  ALA    55      11.858  14.450 -15.987  1.00  0.00              
ATOM     56  CA  ASP    56      12.316  18.243 -16.073  1.00  0.00              
ATOM     57  CA  LEU    57      12.001  18.896 -19.776  1.00  0.00              
ATOM     58  CA  ARG    58      10.203  16.872 -22.387  1.00  0.00              
ATOM     59  CA  ILE    59      11.068  17.218 -26.093  1.00  0.00              
ATOM     60  CA  ALA    60       8.441  15.675 -28.405  1.00  0.00              
ATOM     61  CA  THR    61       9.338  15.103 -32.029  1.00  0.00              
ATOM     62  CA  GLY    62       6.279  16.592 -33.830  1.00  0.00              
ATOM     63  CA  ALA    63       5.358  19.026 -31.134  1.00  0.00              
ATOM     64  CA  THR    64       5.095  22.834 -31.554  1.00  0.00              
ATOM     65  CA  ALA    65       7.392  24.745 -29.225  1.00  0.00              
ATOM     66  CA  ASP    66       4.643  26.140 -27.060  1.00  0.00              
ATOM     67  CA  GLU    67       3.024  22.761 -26.637  1.00  0.00              
ATOM     68  CA  MET    68       6.361  21.173 -25.666  1.00  0.00              
ATOM     69  CA  ALA    69       7.071  23.856 -23.122  1.00  0.00              
ATOM     70  CA  GLN    70       3.602  23.392 -21.592  1.00  0.00              
ATOM     71  CA  PHE    71       4.036  19.614 -21.331  1.00  0.00              
ATOM     72  CA  TYR    72       7.439  19.935 -19.673  1.00  0.00              
ATOM     73  CA  ALA    73       6.428  22.747 -17.270  1.00  0.00              
ATOM     74  CA  VAL    74       3.278  21.220 -15.870  1.00  0.00              
ATOM     75  CA  PRO    75       4.462  17.829 -14.791  1.00  0.00              
ATOM     76  CA  VAL    76       3.059  16.664 -11.414  1.00  0.00              
ATOM     77  CA  LEU    77       5.346  16.686  -8.427  1.00  0.00              
ATOM     78  CA  PRO    78       7.660  14.073  -7.089  1.00  0.00              
ATOM     79  CA  GLU    79       5.580  13.572  -4.002  1.00  0.00              
ATOM     80  CA  GLN    80       2.417  12.799  -5.935  1.00  0.00              
ATOM     81  CA  LEU    81       4.199  10.266  -8.072  1.00  0.00              
ATOM     82  CA  VAL    82       5.695   8.662  -5.021  1.00  0.00              
ATOM     83  CA  ASP    83       2.255   8.325  -3.355  1.00  0.00              
ATOM     84  CA  ARG    84       0.794   6.628  -6.443  1.00  0.00              
ATOM     85  CA  LEU    85       3.704   4.128  -6.636  1.00  0.00              
ATOM     86  CA  ASP    86       3.380   3.303  -2.979  1.00  0.00              
ATOM     87  CA  GLN    87      -0.316   2.412  -3.337  1.00  0.00              
ATOM     88  CA  SER    88       0.611  -0.079  -6.097  1.00  0.00              
ATOM     89  CA  TRP    89       3.354  -1.597  -3.919  1.00  0.00              
ATOM     90  CA  GLN    90       1.005  -2.004  -0.912  1.00  0.00              
ATOM     91  CA  TYR    91      -1.293  -4.121  -3.076  1.00  0.00              
ATOM     92  CA  TYR    92       1.589  -6.302  -4.285  1.00  0.00              
ATOM     93  CA  GLN    93       2.975  -6.803  -0.779  1.00  0.00              
ATOM     94  CA  ASP    94      -0.343  -7.812   0.677  1.00  0.00              
ATOM     95  CA  ARG    95      -1.053 -10.351  -2.077  1.00  0.00              
ATOM     96  CA  LEU    96       2.406 -11.994  -1.733  1.00  0.00              
ATOM     97  CA  MET    97       1.975 -12.220   2.047  1.00  0.00              
ATOM     98  CA  ALA    98      -1.516 -13.742   1.617  1.00  0.00              
ATOM     99  CA  ASP    99      -0.366 -16.387  -0.825  1.00  0.00              
ATOM    100  CA  PHE   100       2.546 -17.378   1.453  1.00  0.00              
ATOM    101  CA  SER   101       0.253 -17.709   4.488  1.00  0.00              
ATOM    102  CA  THR   102      -2.884 -19.506   3.196  1.00  0.00              
ATOM    103  CA  GLU   103      -0.971 -22.357   1.571  1.00  0.00              
ATOM    104  CA  THR   104       1.650 -22.877   4.326  1.00  0.00              
ATOM    105  CA  THR   105       4.676 -22.506   2.064  1.00  0.00              
ATOM    106  CA  TYR   106       3.369 -21.899  -1.514  1.00  0.00              
ATOM    107  CA  TRP   107       6.109 -22.345  -4.055  1.00  0.00              
ATOM    108  CA  GLY   108       5.135 -21.559  -7.599  1.00  0.00              
ATOM    109  CA  VAL   109       7.952 -19.246  -8.713  1.00  0.00              
ATOM    110  CA  THR   110       9.123 -19.510 -12.277  1.00  0.00              
ATOM    111  CA  ASP   111      12.923 -18.980 -12.218  1.00  0.00              
ATOM    112  CA  SER   112      13.605 -16.601 -15.128  1.00  0.00              
ATOM    113  CA  THR   113      10.584 -14.408 -14.303  1.00  0.00              
ATOM    114  CA  THR   114      11.171 -13.858 -10.580  1.00  0.00              
ATOM    115  CA  GLY   115      14.930 -13.272 -10.826  1.00  0.00              
ATOM    116  CA  TRP   116      14.605 -10.779 -13.706  1.00  0.00              
ATOM    117  CA  LEU   117      11.986  -8.719 -11.903  1.00  0.00              
ATOM    118  CA  LEU   118      14.146  -8.611  -8.762  1.00  0.00              
ATOM    119  CA  GLU   119      17.266  -7.524 -10.736  1.00  0.00              
ATOM    120  CA  ALA   120      15.352  -4.784 -12.583  1.00  0.00              
ATOM    121  CA  ALA   121      13.746  -3.419  -9.400  1.00  0.00              
ATOM    122  CA  VAL   122      17.044  -3.352  -7.626  1.00  0.00              
ATOM    123  CA  HIS   123      18.671  -1.487 -10.576  1.00  0.00              
ATOM    124  CA  LEU   124      15.879   1.053 -10.787  1.00  0.00              
ATOM    125  CA  TYR   125      15.984   1.834  -7.010  1.00  0.00              
ATOM    126  CA  HIS   126      19.713   2.316  -6.960  1.00  0.00              
ATOM    127  CA  HIS   127      20.337   4.377 -10.078  1.00  0.00              
ATOM    128  CA  ARG   128      17.667   7.079  -9.837  1.00  0.00              
ATOM    129  CA  SER   129      19.964   9.946 -10.880  1.00  0.00              
ATOM    130  CA  GLN   130      21.194   7.959 -13.883  1.00  0.00              
ATOM    131  CA  LEU   131      17.644   7.229 -15.055  1.00  0.00              
ATOM    132  CA  LEU   132      16.550  10.881 -14.741  1.00  0.00              
ATOM    133  CA  ASP   133      19.612  12.041 -16.653  1.00  0.00              
ATOM    134  CA  TYR   134      18.935   9.503 -19.458  1.00  0.00              
ATOM    135  CA  LEU   135      15.349  10.609 -19.631  1.00  0.00              
ATOM    136  CA  ASN   136      16.346  14.312 -19.783  1.00  0.00              
ATOM    137  CA  LEU   137      18.636  13.689 -22.689  1.00  0.00              
ATOM    138  CA  LEU   138      16.048  11.803 -24.715  1.00  0.00              
ATOM    139  CA  GLY   139      13.348  14.462 -23.994  1.00  0.00              
ATOM    140  CA  TYR   140      15.497  17.447 -25.060  1.00  0.00              
ATOM    141  CA  ASP   141      16.419  15.775 -28.301  1.00  0.00              
ATOM    142  CA  ILE   142      13.314  14.717 -30.148  1.00  0.00              
ATOM    143  CA  LYS   143      14.126  15.345 -33.754  1.00  0.00              
ATOM    144  CA  LEU   144      11.424  17.516 -35.253  1.00  0.00              
ATOM    145  CA  ASP   145      12.620  20.076 -37.843  1.00  0.00              
ATOM    146  CA  LEU   146       9.294  19.821 -40.402  1.00  0.00              
ATOM    147  CA  PHE   147      13.464  19.943 -39.920  1.00  0.00              
ATOM    148  CA  GLU   148      16.841  18.442 -37.919  1.00  0.00              
TER                                                                             
END
