
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0369TS599_2
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_2.T0369.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      -       -           -
LGA    T       2      -       -           -
LGA    D       3      -       -           -
LGA    W       4      -       -           -
LGA    Q       5      -       -           -
LGA    Q       6      -       -           -
LGA    A       7      -       -           -
LGA    L       8      -       -           -
LGA    D       9      -       -           -
LGA    R      10      -       -           -
LGA    H      11      -       -           -
LGA    V      12      -       -           -
LGA    G      13      -       -           -
LGA    V      14      -       -           -
LGA    G      15      -       -           -
LGA    V      16      -       -           -
LGA    R      17      -       -           -
LGA    T      18      -       -           -
LGA    T      19      -       -           -
LGA    R      20      -       -           -
LGA    D      21      -       -           -
LGA    L      22      -       -           -
LGA    I      23      -       -           -
LGA    R      24      -       -           -
LGA    L      25      -       -           -
LGA    I      26      -       -           -
LGA    Q      27      -       -           -
LGA    P      28      -       -           -
LGA    E      29      -       -           -
LGA    D      30      -       -           -
LGA    W      31      -       -           -
LGA    D      32      -       -           -
LGA    K      33      -       -           -
LGA    R      34      M       1           #
LGA    P      35      T       2          4.626
LGA    -       -      D       3           -
LGA    -       -      W       4           -
LGA    I      36      Q       5          2.007
LGA    S      37      Q       6          1.126
LGA    G      38      A       7          0.510
LGA    K      39      L       8          1.104
LGA    R      40      D       9          0.589
LGA    S      41      R      10          0.823
LGA    V      42      H      11          2.214
LGA    Y      43      V      12          2.414
LGA    E      44      G      13          0.750
LGA    V      45      V      14          1.493
LGA    A      46      G      15          2.369
LGA    V      47      V      16          1.528
LGA    H      48      R      17          1.555
LGA    L      49      T      18          3.138
LGA    A      50      T      19          2.449
LGA    V      51      R      20          1.406
LGA    L      52      D      21          3.377
LGA    L      53      L      22          3.366
LGA    E      54      I      23          1.769
LGA    -       -      R      24           -
LGA    -       -      L      25           -
LGA    A      55      I      26          3.902
LGA    -       -      Q      27           -
LGA    -       -      P      28           -
LGA    -       -      E      29           -
LGA    D      56      D      30           #
LGA    L      57      W      31          2.174
LGA    R      58      D      32          3.726
LGA    I      59      K      33          1.683
LGA    A      60      R      34          1.987
LGA    T      61      P      35           #
LGA    G      62      I      36           #
LGA    A      63      S      37          4.915
LGA    -       -      G      38           -
LGA    T      64      K      39           #
LGA    A      65      -       -           -
LGA    D      66      -       -           -
LGA    E      67      R      40           #
LGA    M      68      -       -           -
LGA    A      69      -       -           -
LGA    Q      70      -       -           -
LGA    F      71      S      41           #
LGA    Y      72      V      42           -
LGA    A      73      Y      43           -
LGA    V      74      E      44           #
LGA    P      75      V      45           -
LGA    -       -      A      46           -
LGA    -       -      V      47           -
LGA    -       -      H      48           -
LGA    -       -      L      49           -
LGA    -       -      A      50           -
LGA    -       -      V      51           -
LGA    -       -      L      52           -
LGA    -       -      L      53           -
LGA    -       -      E      54           -
LGA    -       -      A      55           -
LGA    -       -      D      56           -
LGA    -       -      L      57           -
LGA    -       -      R      58           -
LGA    -       -      I      59           -
LGA    -       -      A      60           -
LGA    -       -      T      61           -
LGA    -       -      G      62           -
LGA    -       -      A      63           -
LGA    -       -      T      64           -
LGA    -       -      A      65           -
LGA    -       -      D      66           -
LGA    -       -      E      67           -
LGA    -       -      M      68           -
LGA    -       -      A      69           -
LGA    -       -      Q      70           -
LGA    -       -      F      71           -
LGA    -       -      Y      72           -
LGA    -       -      A      73           -
LGA    -       -      V      74           -
LGA    -       -      P      75           -
LGA    V      76      V      76           #
LGA    L      77      L      77          5.272
LGA    P      78      P      78          4.501
LGA    E      79      E      79          3.995
LGA    Q      80      Q      80          1.095
LGA    L      81      L      81          0.126
LGA    V      82      V      82          0.444
LGA    D      83      D      83          0.513
LGA    R      84      R      84          0.567
LGA    L      85      L      85          0.695
LGA    D      86      D      86          0.368
LGA    Q      87      Q      87          0.799
LGA    S      88      S      88          1.415
LGA    W      89      W      89          1.357
LGA    Q      90      Q      90          0.191
LGA    Y      91      Y      91          1.582
LGA    Y      92      Y      92          2.073
LGA    Q      93      Q      93          1.128
LGA    D      94      D      94          1.440
LGA    R      95      R      95          3.146
LGA    L      96      L      96          3.260
LGA    M      97      M      97          2.035
LGA    A      98      A      98          3.192
LGA    D      99      D      99          2.746
LGA    F     100      F     100           #
LGA    S     101      S     101           -
LGA    T     102      T     102           -
LGA    E     103      E     103           -
LGA    T     104      T     104           -
LGA    T     105      T     105           -
LGA    Y     106      Y     106           -
LGA    W     107      W     107           -
LGA    G     108      G     108           -
LGA    V     109      V     109           -
LGA    -       -      T     110           -
LGA    -       -      D     111           -
LGA    -       -      S     112           -
LGA    T     110      T     113           #
LGA    D     111      T     114          5.081
LGA    S     112      G     115          4.688
LGA    -       -      W     116           -
LGA    -       -      L     117           -
LGA    T     113      L     118           #
LGA    T     114      E     119          2.898
LGA    G     115      A     120           -
LGA    W     116      -       -           -
LGA    L     117      -       -           -
LGA    L     118      A     121          2.166
LGA    E     119      V     122          3.644
LGA    A     120      H     123          4.977
LGA    A     121      L     124          3.156
LGA    V     122      Y     125          4.214
LGA    H     123      -       -           -
LGA    L     124      H     126          5.160
LGA    -       -      H     127           -
LGA    -       -      R     128           -
LGA    Y     125      S     129           #
LGA    H     126      Q     130           -
LGA    H     127      -       -           -
LGA    R     128      -       -           -
LGA    S     129      L     131           #
LGA    Q     130      L     132          3.738
LGA    L     131      -       -           -
LGA    L     132      -       -           -
LGA    D     133      D     133          6.135
LGA    Y     134      Y     134          1.989
LGA    L     135      L     135          3.066
LGA    N     136      N     136           #
LGA    -       -      L     137           -
LGA    L     137      L     138          1.641
LGA    L     138      G     139           #
LGA    G     139      Y     140           -
LGA    Y     140      D     141           -
LGA    D     141      I     142           -
LGA    I     142      K     143           -
LGA    K     143      L     144           -
LGA    L     144      D     145           -
LGA    D     145      L     146           -
LGA    L     146      F     147           -
LGA    F     147      -       -           -
LGA    E     148      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  148  147    5.0     63    2.83    47.62     28.879     2.147

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.872523 * X  +   0.481936 * Y  +   0.080255 * Z  +   7.005422
  Y_new =   0.150541 * X  +  -0.421467 * Y  +   0.894261 * Z  +   0.355272
  Z_new =   0.464802 * X  +  -0.768182 * Y  +  -0.440291 * Z  +  -8.316153 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.091247    1.050346  [ DEG:  -119.8196     60.1804 ]
  Theta =  -0.483411   -2.658182  [ DEG:   -27.6974   -152.3026 ]
  Phi   =   0.170854   -2.970739  [ DEG:     9.7892   -170.2108 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_2                                  
REMARK     2: T0369.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_2.T0369.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  148  147   5.0   63   2.83   47.62  28.879
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_2
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       7.949 -10.993 -20.582  1.00  0.00              
ATOM      2  CA  THR     2       8.037  -8.130 -22.756  1.00  0.00              
ATOM      3  CA  ASP     3       4.982  -8.484 -19.870  1.00  0.00              
ATOM      4  CA  TRP     4       7.324  -8.375 -16.750  1.00  0.00              
ATOM      5  CA  GLN     5       9.286  -5.496 -18.389  1.00  0.00              
ATOM      6  CA  GLN     6       6.469  -3.205 -19.358  1.00  0.00              
ATOM      7  CA  ALA     7       4.997  -2.850 -15.876  1.00  0.00              
ATOM      8  CA  LEU     8       8.345  -1.775 -14.468  1.00  0.00              
ATOM      9  CA  ASP     9       8.966   0.763 -17.240  1.00  0.00              
ATOM     10  CA  ARG    10       5.482   2.292 -16.765  1.00  0.00              
ATOM     11  CA  HIS    11       6.024   2.636 -13.002  1.00  0.00              
ATOM     12  CA  VAL    12       9.423   4.311 -13.602  1.00  0.00              
ATOM     13  CA  GLY    13       7.890   6.704 -16.140  1.00  0.00              
ATOM     14  CA  VAL    14       4.936   7.874 -13.988  1.00  0.00              
ATOM     15  CA  GLY    15       6.812   8.682 -10.754  1.00  0.00              
ATOM     16  CA  VAL    16       9.495  10.489 -12.790  1.00  0.00              
ATOM     17  CA  ARG    17       7.204  12.699 -14.915  1.00  0.00              
ATOM     18  CA  THR    18       5.204  13.955 -11.929  1.00  0.00              
ATOM     19  CA  THR    19       8.515  14.759 -10.166  1.00  0.00              
ATOM     20  CA  ARG    20       9.740  16.776 -13.208  1.00  0.00              
ATOM     21  CA  ASP    21       6.447  18.697 -13.292  1.00  0.00              
ATOM     22  CA  LEU    22       6.850  19.405  -9.521  1.00  0.00              
ATOM     23  CA  ILE    23      10.452  20.555 -10.036  1.00  0.00              
ATOM     24  CA  ARG    24       9.484  22.808 -12.863  1.00  0.00              
ATOM     25  CA  LEU    25       6.666  24.420 -10.794  1.00  0.00              
ATOM     26  CA  ILE    26       8.917  25.026  -7.781  1.00  0.00              
ATOM     27  CA  GLN    27      11.770  26.490  -9.942  1.00  0.00              
ATOM     28  CA  PRO    28       9.982  29.069 -12.084  1.00  0.00              
ATOM     29  CA  GLU    29       8.400  30.688  -8.981  1.00  0.00              
ATOM     30  CA  ASP    30      11.799  30.747  -7.338  1.00  0.00              
ATOM     31  CA  TRP    31      11.055  28.523  -4.360  1.00  0.00              
ATOM     32  CA  ASP    32      13.472  25.757  -3.460  1.00  0.00              
ATOM     33  CA  LYS    33      11.858  22.744  -1.696  1.00  0.00              
ATOM     34  CA  ARG    34      13.991  20.555   0.471  1.00  0.00              
ATOM     35  CA  PRO    35      13.119  16.873   1.161  1.00  0.00              
ATOM     36  CA  ILE    36      16.086  14.795  -0.048  1.00  0.00              
ATOM     37  CA  SER    37      16.563  12.020   2.538  1.00  0.00              
ATOM     38  CA  GLY    38      12.889  10.959   2.553  1.00  0.00              
ATOM     39  CA  LYS    39      12.992  10.348  -1.213  1.00  0.00              
ATOM     40  CA  ARG    40      16.099   8.153  -0.853  1.00  0.00              
ATOM     41  CA  SER    41      14.600   6.008   1.931  1.00  0.00              
ATOM     42  CA  VAL    42      11.401   5.424  -0.069  1.00  0.00              
ATOM     43  CA  TYR    43      13.272   4.345  -3.210  1.00  0.00              
ATOM     44  CA  GLU    44      15.370   1.849  -1.192  1.00  0.00              
ATOM     45  CA  VAL    45      12.310   0.376   0.526  1.00  0.00              
ATOM     46  CA  ALA    46      10.502  -0.037  -2.835  1.00  0.00              
ATOM     47  CA  VAL    47      13.330  -2.115  -4.297  1.00  0.00              
ATOM     48  CA  HIS    48      13.142  -4.320  -1.183  1.00  0.00              
ATOM     49  CA  LEU    49       9.319  -4.788  -1.331  1.00  0.00              
ATOM     50  CA  ALA    50       9.593  -5.770  -5.035  1.00  0.00              
ATOM     51  CA  VAL    51      11.963  -8.503  -3.806  1.00  0.00              
ATOM     52  CA  LEU    52       9.596  -9.743  -1.054  1.00  0.00              
ATOM     53  CA  LEU    53       6.866 -10.167  -3.678  1.00  0.00              
ATOM     54  CA  GLU    54       8.859 -11.665  -6.561  1.00  0.00              
ATOM     55  CA  ALA    55       6.340 -14.389  -7.387  1.00  0.00              
ATOM     56  CA  ASP    56       6.100 -14.500 -11.149  1.00  0.00              
ATOM     57  CA  LEU    57       2.559 -15.637 -11.573  1.00  0.00              
ATOM     58  CA  ARG    58      -0.356 -15.590  -9.202  1.00  0.00              
ATOM     59  CA  ILE    59      -3.497 -17.682  -9.935  1.00  0.00              
ATOM     60  CA  ALA    60      -6.588 -16.278  -8.217  1.00  0.00              
ATOM     61  CA  THR    61      -9.746 -18.287  -8.501  1.00  0.00              
ATOM     62  CA  GLY    62     -12.104 -15.703 -10.054  1.00  0.00              
ATOM     63  CA  ALA    63      -9.711 -14.754 -12.801  1.00  0.00              
ATOM     64  CA  THR    64     -10.822 -14.697 -16.412  1.00  0.00              
ATOM     65  CA  ALA    65      -9.280 -16.990 -18.960  1.00  0.00              
ATOM     66  CA  ASP    66      -7.568 -14.090 -20.739  1.00  0.00              
ATOM     67  CA  GLU    67      -5.858 -13.009 -17.505  1.00  0.00              
ATOM     68  CA  MET    68      -4.620 -16.478 -16.822  1.00  0.00              
ATOM     69  CA  ALA    69      -3.235 -16.808 -20.373  1.00  0.00              
ATOM     70  CA  GLN    70      -1.419 -13.513 -20.114  1.00  0.00              
ATOM     71  CA  PHE    71       0.201 -14.379 -16.745  1.00  0.00              
ATOM     72  CA  TYR    72       1.362 -17.675 -18.144  1.00  0.00              
ATOM     73  CA  ALA    73       2.635 -16.570 -21.500  1.00  0.00              
ATOM     74  CA  VAL    74       5.198 -14.089 -20.079  1.00  0.00              
ATOM     75  CA  PRO    75       6.690 -16.361 -17.355  1.00  0.00              
ATOM     76  CA  VAL    76       9.069 -14.177 -15.407  1.00  0.00              
ATOM     77  CA  LEU    77      11.513 -15.885 -13.108  1.00  0.00              
ATOM     78  CA  PRO    78      12.093 -14.258  -9.748  1.00  0.00              
ATOM     79  CA  GLU    79      15.649 -13.254 -10.416  1.00  0.00              
ATOM     80  CA  GLN    80      14.834 -11.664 -13.823  1.00  0.00              
ATOM     81  CA  LEU    81      12.060  -9.622 -12.314  1.00  0.00              
ATOM     82  CA  VAL    82      14.290  -8.423  -9.479  1.00  0.00              
ATOM     83  CA  ASP    83      16.979  -7.376 -11.862  1.00  0.00              
ATOM     84  CA  ARG    84      14.492  -5.409 -14.055  1.00  0.00              
ATOM     85  CA  LEU    85      13.065  -3.691 -11.008  1.00  0.00              
ATOM     86  CA  ASP    86      16.484  -2.649  -9.724  1.00  0.00              
ATOM     87  CA  GLN    87      17.523  -1.288 -13.082  1.00  0.00              
ATOM     88  CA  SER    88      14.417   0.780 -13.485  1.00  0.00              
ATOM     89  CA  TRP    89      14.490   2.422 -10.071  1.00  0.00              
ATOM     90  CA  GLN    90      18.207   3.226 -10.514  1.00  0.00              
ATOM     91  CA  TYR    91      17.390   4.951 -13.819  1.00  0.00              
ATOM     92  CA  TYR    92      14.781   7.097 -12.074  1.00  0.00              
ATOM     93  CA  GLN    93      17.121   8.054  -9.240  1.00  0.00              
ATOM     94  CA  ASP    94      19.909   9.048 -11.650  1.00  0.00              
ATOM     95  CA  ARG    95      17.613  11.166 -13.817  1.00  0.00              
ATOM     96  CA  LEU    96      16.149  12.919 -10.830  1.00  0.00              
ATOM     97  CA  MET    97      19.650  13.618  -9.478  1.00  0.00              
ATOM     98  CA  ALA    98      20.887  15.034 -12.790  1.00  0.00              
ATOM     99  CA  ASP    99      17.906  17.382 -13.181  1.00  0.00              
ATOM    100  CA  PHE   100      18.367  18.675  -9.592  1.00  0.00              
ATOM    101  CA  SER   101      22.078  19.314 -10.048  1.00  0.00              
ATOM    102  CA  THR   102      21.682  21.275 -13.339  1.00  0.00              
ATOM    103  CA  GLU   103      19.291  23.586 -11.450  1.00  0.00              
ATOM    104  CA  THR   104      21.302  24.428  -8.319  1.00  0.00              
ATOM    105  CA  THR   105      18.675  24.260  -5.660  1.00  0.00              
ATOM    106  CA  TYR   106      17.574  20.569  -5.683  1.00  0.00              
ATOM    107  CA  TRP   107      14.418  20.275  -3.857  1.00  0.00              
ATOM    108  CA  GLY   108      12.400  17.272  -2.919  1.00  0.00              
ATOM    109  CA  VAL   109       8.934  18.831  -2.423  1.00  0.00              
ATOM    110  CA  THR   110       5.911  16.666  -2.299  1.00  0.00              
ATOM    111  CA  ASP   111       3.270  17.463  -4.961  1.00  0.00              
ATOM    112  CA  SER   112       0.180  15.288  -4.673  1.00  0.00              
ATOM    113  CA  THR   113       0.898  12.702  -7.402  1.00  0.00              
ATOM    114  CA  THR   114       4.436  12.020  -6.091  1.00  0.00              
ATOM    115  CA  GLY   115       3.951  11.924  -2.271  1.00  0.00              
ATOM    116  CA  TRP   116       0.955   9.595  -2.726  1.00  0.00              
ATOM    117  CA  LEU   117       2.955   7.073  -4.784  1.00  0.00              
ATOM    118  CA  LEU   118       5.769   7.106  -2.205  1.00  0.00              
ATOM    119  CA  GLU   119       3.433   6.584   0.773  1.00  0.00              
ATOM    120  CA  ALA   120       1.623   3.681  -0.863  1.00  0.00              
ATOM    121  CA  ALA   121       4.832   2.006  -1.861  1.00  0.00              
ATOM    122  CA  VAL   122       6.268   2.380   1.669  1.00  0.00              
ATOM    123  CA  HIS   123       3.169   0.822   3.198  1.00  0.00              
ATOM    124  CA  LEU   124       3.294  -2.131   0.778  1.00  0.00              
ATOM    125  CA  TYR   125       7.004  -2.754   1.447  1.00  0.00              
ATOM    126  CA  HIS   126       6.630  -2.621   5.175  1.00  0.00              
ATOM    127  CA  HIS   127       3.721  -5.108   5.081  1.00  0.00              
ATOM    128  CA  ARG   128       5.863  -7.594   3.121  1.00  0.00              
ATOM    129  CA  SER   129       4.897 -10.786   4.984  1.00  0.00              
ATOM    130  CA  GLN   130       1.250 -10.312   4.041  1.00  0.00              
ATOM    131  CA  LEU   131       2.047  -9.768   0.340  1.00  0.00              
ATOM    132  CA  LEU   132       4.375 -12.810   0.060  1.00  0.00              
ATOM    133  CA  ASP   133       1.843 -15.042   1.792  1.00  0.00              
ATOM    134  CA  TYR   134      -0.935 -13.814  -0.567  1.00  0.00              
ATOM    135  CA  LEU   135       1.291 -14.522  -3.545  1.00  0.00              
ATOM    136  CA  ASN   136       2.115 -18.025  -2.227  1.00  0.00              
ATOM    137  CA  LEU   137      -1.520 -18.834  -1.689  1.00  0.00              
ATOM    138  CA  LEU   138      -2.525 -17.689  -5.161  1.00  0.00              
ATOM    139  CA  GLY   139       0.286 -19.749  -6.740  1.00  0.00              
ATOM    140  CA  TYR   140      -0.399 -22.932  -4.702  1.00  0.00              
ATOM    141  CA  ASP   141      -4.162 -23.216  -5.096  1.00  0.00              
ATOM    142  CA  ILE   142      -4.837 -22.461  -8.808  1.00  0.00              
ATOM    143  CA  LYS   143      -7.954 -24.518  -9.231  1.00  0.00              
ATOM    144  CA  LEU   144     -10.163 -21.830 -10.886  1.00  0.00              
ATOM    145  CA  ASP   145     -12.331 -23.956 -13.153  1.00  0.00              
ATOM    146  CA  LEU   146     -16.192 -22.360 -12.672  1.00  0.00              
ATOM    147  CA  PHE   147     -15.087 -21.475  -8.712  1.00  0.00              
ATOM    148  CA  GLU   148     -13.026 -19.585  -6.208  1.00  0.00              
TER                                                                             
END
