
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0369TS599_5
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_5.T0369.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    T       2      T       2           -
LGA    D       3      D       3           -
LGA    W       4      W       4           -
LGA    Q       5      Q       5           -
LGA    Q       6      Q       6           -
LGA    A       7      A       7           -
LGA    L       8      L       8           -
LGA    D       9      D       9           -
LGA    R      10      R      10           -
LGA    H      11      H      11           -
LGA    V      12      V      12           -
LGA    G      13      G      13           -
LGA    V      14      V      14           -
LGA    G      15      G      15           -
LGA    V      16      V      16           -
LGA    R      17      -       -           -
LGA    T      18      -       -           -
LGA    T      19      -       -           -
LGA    R      20      R      17          5.076
LGA    D      21      -       -           -
LGA    L      22      -       -           -
LGA    I      23      -       -           -
LGA    R      24      T      18           #
LGA    L      25      T      19           -
LGA    I      26      R      20           -
LGA    -       -      D      21           -
LGA    Q      27      L      22           #
LGA    P      28      I      23           -
LGA    E      29      R      24           -
LGA    D      30      -       -           -
LGA    W      31      -       -           -
LGA    D      32      -       -           -
LGA    K      33      L      25          4.933
LGA    R      34      I      26          3.714
LGA    P      35      Q      27          2.847
LGA    I      36      P      28           -
LGA    -       -      E      29           -
LGA    -       -      D      30           -
LGA    S      37      W      31          5.510
LGA    -       -      D      32           -
LGA    -       -      K      33           -
LGA    -       -      R      34           -
LGA    -       -      P      35           -
LGA    -       -      I      36           -
LGA    -       -      S      37           -
LGA    -       -      G      38           -
LGA    -       -      K      39           -
LGA    -       -      R      40           -
LGA    -       -      S      41           -
LGA    -       -      V      42           -
LGA    G      38      Y      43          5.307
LGA    K      39      E      44           -
LGA    -       -      V      45           -
LGA    R      40      A      46          3.305
LGA    S      41      V      47          2.519
LGA    -       -      H      48           -
LGA    V      42      L      49          1.375
LGA    Y      43      A      50          2.540
LGA    E      44      V      51          1.800
LGA    V      45      L      52          2.501
LGA    A      46      L      53          2.966
LGA    V      47      E      54          2.566
LGA    H      48      A      55          1.213
LGA    L      49      D      56          1.309
LGA    A      50      L      57          2.181
LGA    V      51      R      58          2.062
LGA    L      52      I      59          1.477
LGA    L      53      A      60          1.145
LGA    E      54      -       -           -
LGA    A      55      T      61          0.848
LGA    D      56      G      62          3.127
LGA    L      57      -       -           -
LGA    R      58      A      63          3.662
LGA    I      59      T      64           #
LGA    -       -      A      65           -
LGA    A      60      D      66           #
LGA    T      61      E      67           -
LGA    G      62      M      68           -
LGA    A      63      A      69           -
LGA    T      64      Q      70           -
LGA    A      65      F      71           -
LGA    D      66      Y      72           -
LGA    E      67      A      73           -
LGA    M      68      V      74           -
LGA    A      69      P      75           -
LGA    Q      70      V      76           -
LGA    F      71      L      77           -
LGA    Y      72      P      78           -
LGA    -       -      E      79           -
LGA    -       -      Q      80           -
LGA    -       -      L      81           -
LGA    -       -      V      82           -
LGA    -       -      D      83           -
LGA    -       -      R      84           -
LGA    -       -      L      85           -
LGA    -       -      D      86           -
LGA    -       -      Q      87           -
LGA    -       -      S      88           -
LGA    -       -      W      89           -
LGA    -       -      Q      90           -
LGA    -       -      Y      91           -
LGA    -       -      Y      92           -
LGA    -       -      Q      93           -
LGA    -       -      D      94           -
LGA    -       -      R      95           -
LGA    -       -      L      96           -
LGA    -       -      M      97           -
LGA    -       -      A      98           -
LGA    -       -      D      99           -
LGA    -       -      F     100           -
LGA    -       -      S     101           -
LGA    -       -      T     102           -
LGA    A      73      E     103           #
LGA    V      74      T     104          1.333
LGA    -       -      T     105           -
LGA    -       -      Y     106           -
LGA    -       -      W     107           -
LGA    -       -      G     108           -
LGA    -       -      V     109           -
LGA    P      75      T     110          4.357
LGA    V      76      D     111          3.066
LGA    L      77      S     112          1.375
LGA    P      78      T     113          0.307
LGA    E      79      T     114          1.310
LGA    Q      80      G     115          1.491
LGA    L      81      W     116          0.489
LGA    V      82      L     117          1.297
LGA    D      83      L     118          1.991
LGA    R      84      E     119          1.201
LGA    L      85      A     120          0.699
LGA    D      86      A     121          1.524
LGA    Q      87      V     122          1.771
LGA    S      88      H     123          0.506
LGA    W      89      L     124          0.729
LGA    Q      90      Y     125          1.248
LGA    Y      91      H     126          0.645
LGA    Y      92      H     127          0.539
LGA    Q      93      R     128          0.820
LGA    D      94      S     129          0.828
LGA    R      95      Q     130          0.540
LGA    L      96      L     131          0.580
LGA    M      97      L     132          0.283
LGA    A      98      D     133          0.282
LGA    D      99      Y     134          0.547
LGA    F     100      L     135          0.452
LGA    S     101      N     136          0.298
LGA    T     102      L     137          0.364
LGA    E     103      L     138          0.910
LGA    T     104      G     139          2.282
LGA    T     105      Y     140          2.411
LGA    Y     106      D     141          2.688
LGA    W     107      I     142          2.568
LGA    G     108      K     143          2.657
LGA    V     109      L     144          2.292
LGA    T     110      D     145          2.656
LGA    D     111      L     146          1.504
LGA    S     112      F     147          3.825
LGA    T     113      -       -           -
LGA    T     114      -       -           -
LGA    G     115      -       -           -
LGA    W     116      -       -           -
LGA    L     117      -       -           -
LGA    L     118      -       -           -
LGA    E     119      -       -           -
LGA    A     120      -       -           -
LGA    A     121      -       -           -
LGA    V     122      -       -           -
LGA    H     123      -       -           -
LGA    L     124      -       -           -
LGA    Y     125      -       -           -
LGA    H     126      -       -           -
LGA    H     127      -       -           -
LGA    R     128      -       -           -
LGA    S     129      -       -           -
LGA    Q     130      -       -           -
LGA    L     131      -       -           -
LGA    L     132      -       -           -
LGA    D     133      -       -           -
LGA    Y     134      -       -           -
LGA    L     135      -       -           -
LGA    N     136      -       -           -
LGA    L     137      -       -           -
LGA    L     138      -       -           -
LGA    G     139      -       -           -
LGA    Y     140      -       -           -
LGA    D     141      -       -           -
LGA    I     142      -       -           -
LGA    K     143      -       -           -
LGA    L     144      -       -           -
LGA    D     145      -       -           -
LGA    L     146      -       -           -
LGA    F     147      -       -           -
LGA    E     148      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  148  147    5.0     62    2.33     3.23     31.474     2.547

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.286692 * X  +   0.094993 * Y  +   0.953302 * Z  +  10.034420
  Y_new =   0.866349 * X  +  -0.450482 * Y  +  -0.215653 * Z  +   2.252955
  Z_new =   0.408959 * X  +   0.887718 * Y  +  -0.211446 * Z  + -10.590208 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.804630   -1.336963  [ DEG:   103.3977    -76.6023 ]
  Theta =  -0.421313   -2.720279  [ DEG:   -24.1395   -155.8605 ]
  Phi   =   1.251220   -1.890373  [ DEG:    71.6896   -108.3104 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_5                                  
REMARK     2: T0369.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_5.T0369.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  148  147   5.0   62   2.33    3.23  31.474
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_5
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      31.223  11.940 -20.162  1.00  0.00              
ATOM      2  CA  THR     2      32.488   7.955 -20.572  1.00  0.00              
ATOM      3  CA  ASP     3      33.850   8.559 -17.121  1.00  0.00              
ATOM      4  CA  TRP     4      30.682  10.357 -15.738  1.00  0.00              
ATOM      5  CA  GLN     5      28.398   7.548 -17.008  1.00  0.00              
ATOM      6  CA  GLN     6      30.508   4.855 -15.474  1.00  0.00              
ATOM      7  CA  ALA     7      30.590   6.650 -12.091  1.00  0.00              
ATOM      8  CA  LEU     8      26.788   7.114 -12.110  1.00  0.00              
ATOM      9  CA  ASP     9      26.139   3.443 -13.032  1.00  0.00              
ATOM     10  CA  ARG    10      28.467   2.338 -10.250  1.00  0.00              
ATOM     11  CA  HIS    11      26.696   4.565  -7.717  1.00  0.00              
ATOM     12  CA  VAL    12      23.216   3.299  -8.707  1.00  0.00              
ATOM     13  CA  GLY    13      24.617  -0.244  -8.343  1.00  0.00              
ATOM     14  CA  VAL    14      26.386  -0.017  -4.927  1.00  0.00              
ATOM     15  CA  GLY    15      23.646   1.617  -2.889  1.00  0.00              
ATOM     16  CA  VAL    16      21.204  -0.943  -4.313  1.00  0.00              
ATOM     17  CA  ARG    17      23.363  -3.941  -3.582  1.00  0.00              
ATOM     18  CA  THR    18      24.145  -3.165   0.083  1.00  0.00              
ATOM     19  CA  THR    19      20.480  -2.468   0.805  1.00  0.00              
ATOM     20  CA  ARG    20      19.294  -5.702  -0.881  1.00  0.00              
ATOM     21  CA  ASP    21      21.881  -7.638   1.135  1.00  0.00              
ATOM     22  CA  LEU    22      20.554  -6.121   4.401  1.00  0.00              
ATOM     23  CA  ILE    23      17.004  -7.021   3.336  1.00  0.00              
ATOM     24  CA  ARG    24      18.180 -10.562   2.533  1.00  0.00              
ATOM     25  CA  LEU    25      19.816 -10.884   5.964  1.00  0.00              
ATOM     26  CA  ILE    26      16.601  -9.951   7.809  1.00  0.00              
ATOM     27  CA  GLN    27      14.371 -12.262   5.715  1.00  0.00              
ATOM     28  CA  PRO    28      16.237 -15.580   5.699  1.00  0.00              
ATOM     29  CA  GLU    29      16.270 -15.541   9.500  1.00  0.00              
ATOM     30  CA  ASP    30      12.519 -15.004   9.769  1.00  0.00              
ATOM     31  CA  TRP    31      11.413 -17.822   7.411  1.00  0.00              
ATOM     32  CA  ASP    32       8.438 -17.764   5.163  1.00  0.00              
ATOM     33  CA  LYS    33       8.895 -19.174   1.620  1.00  0.00              
ATOM     34  CA  ARG    34       6.952 -17.727  -1.132  1.00  0.00              
ATOM     35  CA  PRO    35       7.245 -17.656  -4.869  1.00  0.00              
ATOM     36  CA  ILE    36       7.973 -14.057  -5.783  1.00  0.00              
ATOM     37  CA  SER    37       5.935 -12.802  -8.720  1.00  0.00              
ATOM     38  CA  GLY    38       4.061  -9.933  -7.124  1.00  0.00              
ATOM     39  CA  LYS    39       7.255  -8.228  -5.868  1.00  0.00              
ATOM     40  CA  ARG    40       8.474  -8.104  -9.467  1.00  0.00              
ATOM     41  CA  SER    41       5.187  -6.610 -10.754  1.00  0.00              
ATOM     42  CA  VAL    42       5.165  -3.872  -8.095  1.00  0.00              
ATOM     43  CA  TYR    43       8.715  -2.748  -9.084  1.00  0.00              
ATOM     44  CA  GLU    44       7.599  -2.711 -12.700  1.00  0.00              
ATOM     45  CA  VAL    45       4.455  -0.618 -12.048  1.00  0.00              
ATOM     46  CA  ALA    46       6.511   1.867 -10.117  1.00  0.00              
ATOM     47  CA  VAL    47       9.180   2.192 -12.752  1.00  0.00              
ATOM     48  CA  HIS    48       6.563   2.663 -15.512  1.00  0.00              
ATOM     49  CA  LEU    49       4.678   5.332 -13.521  1.00  0.00              
ATOM     50  CA  ALA    50       7.877   7.244 -12.846  1.00  0.00              
ATOM     51  CA  VAL    51       8.923   7.318 -16.497  1.00  0.00              
ATOM     52  CA  LEU    52       5.505   8.261 -17.915  1.00  0.00              
ATOM     53  CA  LEU    53       4.964  11.133 -15.495  1.00  0.00              
ATOM     54  CA  GLU    54       8.423  12.723 -15.228  1.00  0.00              
ATOM     55  CA  ALA    55       8.304  13.201 -18.992  1.00  0.00              
ATOM     56  CA  ASP    56       5.046  15.209 -18.971  1.00  0.00              
ATOM     57  CA  LEU    57       3.882  14.751 -22.364  1.00  0.00              
ATOM     58  CA  ARG    58       4.611  12.233 -25.187  1.00  0.00              
ATOM     59  CA  ILE    59       3.608  13.450 -28.641  1.00  0.00              
ATOM     60  CA  ALA    60       2.969  10.851 -31.285  1.00  0.00              
ATOM     61  CA  THR    61       3.214  11.536 -34.997  1.00  0.00              
ATOM     62  CA  GLY    62      -0.138  10.613 -36.573  1.00  0.00              
ATOM     63  CA  ALA    63      -2.149  12.190 -33.800  1.00  0.00              
ATOM     64  CA  THR    64      -4.646  15.080 -34.263  1.00  0.00              
ATOM     65  CA  ALA    65      -3.651  18.539 -33.151  1.00  0.00              
ATOM     66  CA  ASP    66      -5.620  18.691 -29.947  1.00  0.00              
ATOM     67  CA  GLU    67      -4.206  15.370 -28.890  1.00  0.00              
ATOM     68  CA  MET    68      -0.672  16.517 -29.641  1.00  0.00              
ATOM     69  CA  ALA    69      -1.019  19.704 -27.689  1.00  0.00              
ATOM     70  CA  GLN    70      -2.370  17.741 -24.721  1.00  0.00              
ATOM     71  CA  PHE    71       0.554  15.258 -24.921  1.00  0.00              
ATOM     72  CA  TYR    72       3.116  18.108 -24.972  1.00  0.00              
ATOM     73  CA  ALA    73       1.618  20.275 -22.233  1.00  0.00              
ATOM     74  CA  VAL    74       0.870  17.793 -19.473  1.00  0.00              
ATOM     75  CA  PRO    75       1.959  19.685 -16.419  1.00  0.00              
ATOM     76  CA  VAL    76       2.854  17.154 -13.782  1.00  0.00              
ATOM     77  CA  LEU    77       5.219  18.867 -11.375  1.00  0.00              
ATOM     78  CA  PRO    78       8.205  16.923  -9.947  1.00  0.00              
ATOM     79  CA  GLU    79       6.787  16.941  -6.428  1.00  0.00              
ATOM     80  CA  GLN    80       3.363  15.686  -7.596  1.00  0.00              
ATOM     81  CA  LEU    81       4.961  12.921  -9.610  1.00  0.00              
ATOM     82  CA  VAL    82       7.101  11.814  -6.684  1.00  0.00              
ATOM     83  CA  ASP    83       3.996  11.691  -4.480  1.00  0.00              
ATOM     84  CA  ARG    84       2.097   9.609  -7.052  1.00  0.00              
ATOM     85  CA  LEU    85       5.034   7.163  -7.323  1.00  0.00              
ATOM     86  CA  ASP    86       5.200   6.771  -3.571  1.00  0.00              
ATOM     87  CA  GLN    87       1.423   6.070  -3.478  1.00  0.00              
ATOM     88  CA  SER    88       1.877   3.505  -6.269  1.00  0.00              
ATOM     89  CA  TRP    89       4.723   1.722  -4.431  1.00  0.00              
ATOM     90  CA  GLN    90       2.763   1.539  -1.205  1.00  0.00              
ATOM     91  CA  TYR    91      -0.273   0.077  -3.064  1.00  0.00              
ATOM     92  CA  TYR    92       1.799  -2.521  -4.822  1.00  0.00              
ATOM     93  CA  GLN    93       3.484  -3.743  -1.686  1.00  0.00              
ATOM     94  CA  ASP    94       0.239  -4.145   0.318  1.00  0.00              
ATOM     95  CA  ARG    95      -1.545  -6.097  -2.445  1.00  0.00              
ATOM     96  CA  LEU    96       1.296  -8.513  -3.139  1.00  0.00              
ATOM     97  CA  MET    97       1.939  -9.248   0.503  1.00  0.00              
ATOM     98  CA  ALA    98      -1.756  -9.943   1.123  1.00  0.00              
ATOM     99  CA  ASP    99      -1.871 -12.329  -1.858  1.00  0.00              
ATOM    100  CA  PHE   100       1.243 -14.204  -0.718  1.00  0.00              
ATOM    101  CA  SER   101       0.054 -14.710   2.862  1.00  0.00              
ATOM    102  CA  THR   102      -3.300 -15.929   1.522  1.00  0.00              
ATOM    103  CA  GLU   103      -1.624 -18.332  -0.887  1.00  0.00              
ATOM    104  CA  THR   104       0.246 -20.564   1.342  1.00  0.00              
ATOM    105  CA  THR   105       3.785 -19.307   1.317  1.00  0.00              
ATOM    106  CA  TYR   106       3.835 -16.954   4.253  1.00  0.00              
ATOM    107  CA  TRP   107       6.368 -14.351   3.632  1.00  0.00              
ATOM    108  CA  GLY   108       8.566 -12.883   6.317  1.00  0.00              
ATOM    109  CA  VAL   109       9.379  -9.539   4.603  1.00  0.00              
ATOM    110  CA  THR   110      11.583  -7.177   6.564  1.00  0.00              
ATOM    111  CA  ASP   111       9.705  -3.865   6.343  1.00  0.00              
ATOM    112  CA  SER   112      12.522  -1.328   6.701  1.00  0.00              
ATOM    113  CA  THR   113      14.579  -3.095   3.988  1.00  0.00              
ATOM    114  CA  THR   114      11.896  -3.357   1.264  1.00  0.00              
ATOM    115  CA  GLY   115      11.013   0.377   1.646  1.00  0.00              
ATOM    116  CA  TRP   116      14.730   1.178   1.464  1.00  0.00              
ATOM    117  CA  LEU   117      15.216  -0.744  -1.817  1.00  0.00              
ATOM    118  CA  LEU   118      12.262   0.965  -3.527  1.00  0.00              
ATOM    119  CA  GLU   119      13.554   4.426  -2.459  1.00  0.00              
ATOM    120  CA  ALA   120      17.085   3.565  -3.619  1.00  0.00              
ATOM    121  CA  ALA   121      15.834   2.534  -7.069  1.00  0.00              
ATOM    122  CA  VAL   122      13.838   5.735  -7.387  1.00  0.00              
ATOM    123  CA  HIS   123      16.866   7.838  -6.446  1.00  0.00              
ATOM    124  CA  LEU   124      19.152   6.077  -8.905  1.00  0.00              
ATOM    125  CA  TYR   125      16.619   6.406 -11.693  1.00  0.00              
ATOM    126  CA  HIS   126      16.129  10.159 -11.299  1.00  0.00              
ATOM    127  CA  HIS   127      19.670  11.273 -10.679  1.00  0.00              
ATOM    128  CA  ARG   128      22.622  10.881 -12.705  1.00  0.00              
ATOM    129  CA  SER   129      22.332  12.834 -15.890  1.00  0.00              
ATOM    130  CA  GLN   130      22.807   9.743 -18.119  1.00  0.00              
ATOM    131  CA  LEU   131      19.883   7.898 -16.525  1.00  0.00              
ATOM    132  CA  LEU   132      17.522  10.883 -16.608  1.00  0.00              
ATOM    133  CA  ASP   133      18.309  11.492 -20.264  1.00  0.00              
ATOM    134  CA  TYR   134      17.636   7.849 -21.098  1.00  0.00              
ATOM    135  CA  LEU   135      14.292   7.928 -19.291  1.00  0.00              
ATOM    136  CA  ASN   136      13.322  11.114 -21.136  1.00  0.00              
ATOM    137  CA  LEU   137      14.218   9.577 -24.461  1.00  0.00              
ATOM    138  CA  LEU   138      12.162   6.441 -23.698  1.00  0.00              
ATOM    139  CA  GLY   139       9.183   8.648 -22.721  1.00  0.00              
ATOM    140  CA  TYR   140       9.412  10.749 -25.913  1.00  0.00              
ATOM    141  CA  ASP   141       9.553   7.614 -28.121  1.00  0.00              
ATOM    142  CA  ILE   142       6.382   5.765 -27.092  1.00  0.00              
ATOM    143  CA  LYS   143       5.168   4.581 -30.451  1.00  0.00              
ATOM    144  CA  LEU   144       1.679   6.176 -30.522  1.00  0.00              
ATOM    145  CA  ASP   145       0.384   7.625 -33.744  1.00  0.00              
ATOM    146  CA  LEU   146      -3.336   6.479 -33.910  1.00  0.00              
ATOM    147  CA  PHE   147      -1.680   2.697 -33.306  1.00  0.00              
ATOM    148  CA  GLU   148       2.241   1.451 -34.158  1.00  0.00              
TER                                                                             
END
