
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0370TS393_1
# Molecule2: number of CA atoms  154 ( 1177),  selected  154 , name T0370.pdb
# PARAMETERS: T0370TS393_1.T0370.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    T       2      T       2           -
LGA    T       3      T       3           -
LGA    P       4      P       4           -
LGA    -       -      P       5           -
LGA    -       -      A       6           -
LGA    -       -      R       7           -
LGA    -       -      T       8           -
LGA    P       5      A       9           #
LGA    A       6      K      10          4.980
LGA    -       -      Q      11           -
LGA    -       -      R      12           -
LGA    -       -      I      13           -
LGA    R       7      Q      14          1.918
LGA    T       8      D      15          1.383
LGA    A       9      T      16          1.441
LGA    K      10      L      17          1.099
LGA    Q      11      N      18          0.811
LGA    R      12      R      19          1.234
LGA    I      13      L      20          0.958
LGA    Q      14      E      21          1.627
LGA    D      15      L      22          2.116
LGA    T      16      D      23          1.592
LGA    L      17      V      24          2.894
LGA    N      18      -       -           -
LGA    R      19      -       -           -
LGA    L      20      D      25          2.983
LGA    E      21      A      26           -
LGA    L      22      -       -           -
LGA    D      23      -       -           -
LGA    V      24      -       -           -
LGA    D      25      -       -           -
LGA    A      26      W      27           #
LGA    W      27      V      28           -
LGA    V      28      S      29           -
LGA    S      29      T      30           -
LGA    T      30      A      31           -
LGA    A      31      G      32           -
LGA    G      32      A      33           -
LGA    A      33      D      34           -
LGA    D      34      G      35           -
LGA    G      35      G      36           -
LGA    G      36      A      37           -
LGA    -       -      P      38           -
LGA    -       -      Y      39           -
LGA    -       -      L      40           -
LGA    A      37      V      41          2.465
LGA    P      38      P      42          4.939
LGA    Y      39      L      43          3.724
LGA    L      40      S      44           -
LGA    V      41      Y      45           -
LGA    P      42      L      46           -
LGA    L      43      W      47           -
LGA    -       -      D      48           -
LGA    -       -      G      49           -
LGA    -       -      E      50           -
LGA    -       -      T      51           -
LGA    S      44      F      52          5.035
LGA    Y      45      L      53          3.890
LGA    L      46      V      54           #
LGA    W      47      -       -           -
LGA    D      48      -       -           -
LGA    G      49      -       -           -
LGA    E      50      -       -           -
LGA    T      51      -       -           -
LGA    F      52      -       -           -
LGA    L      53      A      55           #
LGA    V      54      T      56          4.916
LGA    A      55      P      57           #
LGA    -       -      A      58           -
LGA    -       -      A      59           -
LGA    -       -      S      60           -
LGA    -       -      P      61           -
LGA    T      56      T      62          3.908
LGA    P      57      G      63          3.876
LGA    A      58      R      64          4.347
LGA    A      59      N      65           #
LGA    S      60      -       -           -
LGA    P      61      -       -           -
LGA    T      62      -       -           -
LGA    G      63      -       -           -
LGA    R      64      -       -           -
LGA    N      65      -       -           -
LGA    L      66      -       -           -
LGA    S      67      -       -           -
LGA    E      68      -       -           -
LGA    T      69      -       -           -
LGA    G      70      -       -           -
LGA    R      71      -       -           -
LGA    V      72      -       -           -
LGA    R      73      -       -           -
LGA    L      74      -       -           -
LGA    G      75      -       -           -
LGA    I      76      L      66           #
LGA    G      77      S      67          3.092
LGA    P      78      E      68          3.311
LGA    T      79      T      69          1.354
LGA    R      80      G      70          2.868
LGA    D      81      R      71          4.189
LGA    L      82      V      72           #
LGA    V      83      R      73          5.232
LGA    L      84      L      74          3.642
LGA    V      85      G      75          5.312
LGA    E      86      I      76          5.019
LGA    -       -      G      77           -
LGA    -       -      P      78           -
LGA    -       -      T      79           -
LGA    -       -      R      80           -
LGA    -       -      D      81           -
LGA    -       -      L      82           -
LGA    -       -      V      83           -
LGA    -       -      L      84           -
LGA    G      87      V      85           #
LGA    T      88      E      86           -
LGA    A      89      -       -           -
LGA    L      90      -       -           -
LGA    P      91      -       -           -
LGA    L      92      -       -           -
LGA    E      93      -       -           -
LGA    P      94      -       -           -
LGA    A      95      -       -           -
LGA    G      96      G      87           #
LGA    L      97      T      88          4.262
LGA    P      98      -       -           -
LGA    D      99      -       -           -
LGA    G     100      -       -           -
LGA    V     101      -       -           -
LGA    G     102      -       -           -
LGA    D     103      A      89           #
LGA    T     104      L      90           -
LGA    F     105      P      91           -
LGA    A     106      L      92           -
LGA    E     107      E      93           -
LGA    K     108      P      94           -
LGA    T     109      A      95           -
LGA    G     110      G      96           -
LGA    F     111      L      97           -
LGA    D     112      P      98           -
LGA    P     113      D      99           -
LGA    R     114      G     100           -
LGA    R     115      V     101           -
LGA    L     116      G     102           -
LGA    T     117      D     103           -
LGA    T     118      T     104           -
LGA    S     119      F     105           -
LGA    Y     120      A     106           -
LGA    L     121      E     107           -
LGA    Y     122      -       -           -
LGA    F     123      -       -           -
LGA    R     124      -       -           -
LGA    I     125      K     108          4.198
LGA    S     126      T     109          3.065
LGA    P     127      -       -           -
LGA    R     128      G     110          1.830
LGA    R     129      F     111          2.452
LGA    V     130      -       -           -
LGA    Q     131      -       -           -
LGA    A     132      D     112          1.980
LGA    W     133      P     113          2.886
LGA    R     134      R     114          4.143
LGA    E     135      R     115          2.847
LGA    A     136      L     116          4.380
LGA    N     137      -       -           -
LGA    E     138      -       -           -
LGA    L     139      -       -           -
LGA    S     140      -       -           -
LGA    G     141      -       -           -
LGA    R     142      -       -           -
LGA    E     143      -       -           -
LGA    L     144      -       -           -
LGA    M     145      -       -           -
LGA    R     146      -       -           -
LGA    D     147      -       -           -
LGA    G     148      T     117           #
LGA    -       -      T     118           -
LGA    E     149      S     119          3.221
LGA    -       -      Y     120           -
LGA    W     150      L     121           #
LGA    L     151      Y     122           -
LGA    V     152      F     123           -
LGA    T     153      R     124           -
LGA    D     154      I     125           -
LGA    -       -      S     126           -
LGA    -       -      P     127           -
LGA    -       -      R     128           -
LGA    -       -      R     129           -
LGA    -       -      V     130           -
LGA    -       -      Q     131           -
LGA    -       -      A     132           -
LGA    -       -      W     133           -
LGA    -       -      R     134           -
LGA    -       -      E     135           -
LGA    -       -      A     136           -
LGA    -       -      N     137           -
LGA    -       -      E     138           -
LGA    -       -      L     139           -
LGA    -       -      S     140           -
LGA    -       -      G     141           -
LGA    -       -      R     142           -
LGA    -       -      E     143           -
LGA    -       -      L     144           -
LGA    -       -      M     145           -
LGA    -       -      R     146           -
LGA    -       -      D     147           -
LGA    -       -      G     148           -
LGA    -       -      E     149           -
LGA    -       -      W     150           -
LGA    -       -      L     151           -
LGA    -       -      V     152           -
LGA    -       -      T     153           -
LGA    -       -      D     154           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  154  154    5.0     42    3.40    14.29     15.639     1.200

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.131813 * X  +   0.139965 * Y  +  -0.981343 * Z  +   0.765005
  Y_new =   0.045857 * X  +  -0.989783 * Y  +  -0.135009 * Z  +  32.470325
  Z_new =  -0.990213 * X  +  -0.027205 * Y  +  -0.136885 * Z  +  15.937971 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.945405    0.196187  [ DEG:  -168.7593     11.2407 ]
  Theta =   1.430777    1.710815  [ DEG:    81.9775     98.0225 ]
  Phi   =   0.334794   -2.806799  [ DEG:    19.1823   -160.8177 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS393_1                                  
REMARK     2: T0370.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0370TS393_1.T0370.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  154  154   5.0   42   3.40   14.29  15.639
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS393_1
PFRMAT TS
TARGET T0370
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      23.624  33.281  39.919  1.00 25.00           C
ATOM      2  CA  THR     2      24.599  35.125  36.711  1.00 25.00           C
ATOM      3  CA  THR     3      23.854  34.013  33.149  1.00 25.00           C
ATOM      4  CA  PRO     4      23.310  36.390  30.304  1.00 25.00           C
ATOM      5  CA  PRO     5      23.233  33.401  27.983  1.00 25.00           C
ATOM      6  CA  ALA     6      19.523  33.548  27.039  1.00 25.00           C
ATOM      7  CA  ARG     7      19.535  37.376  26.942  1.00 25.00           C
ATOM      8  CA  THR     8      20.442  37.304  23.222  1.00 25.00           C
ATOM      9  CA  ALA     9      17.592  34.836  22.549  1.00 25.00           C
ATOM     10  CA  LYS    10      15.151  37.100  24.442  1.00 25.00           C
ATOM     11  CA  GLN    11      16.326  40.117  22.395  1.00 25.00           C
ATOM     12  CA  ARG    12      15.836  38.139  19.153  1.00 25.00           C
ATOM     13  CA  ILE    13      12.308  37.144  20.263  1.00 25.00           C
ATOM     14  CA  GLN    14      11.500  40.803  21.059  1.00 25.00           C
ATOM     15  CA  ASP    15      12.785  41.862  17.610  1.00 25.00           C
ATOM     16  CA  THR    16      10.624  39.170  15.951  1.00 25.00           C
ATOM     17  CA  LEU    17       7.566  40.380  17.915  1.00 25.00           C
ATOM     18  CA  ASN    18       8.267  43.987  16.831  1.00 25.00           C
ATOM     19  CA  ARG    19       8.558  42.859  13.183  1.00 25.00           C
ATOM     20  CA  LEU    20       5.233  40.980  13.472  1.00 25.00           C
ATOM     21  CA  GLU    21       3.574  44.095  14.959  1.00 25.00           C
ATOM     22  CA  LEU    22       3.391  45.130  11.284  1.00 25.00           C
ATOM     23  CA  ASP    23       5.978  44.133   8.597  1.00 25.00           C
ATOM     24  CA  VAL    24       7.101  40.493   8.737  1.00 25.00           C
ATOM     25  CA  ASP    25       5.696  38.446   5.820  1.00 25.00           C
ATOM     26  CA  ALA    26       2.871  37.150   8.057  1.00 25.00           C
ATOM     27  CA  TRP    27       2.070  40.729   9.161  1.00 25.00           C
ATOM     28  CA  VAL    28       1.988  41.864   5.504  1.00 25.00           C
ATOM     29  CA  SER    29      -0.369  38.974   4.635  1.00 25.00           C
ATOM     30  CA  THR    30      -2.654  39.924   7.557  1.00 25.00           C
ATOM     31  CA  ALA    31      -4.726  42.034   5.161  1.00 25.00           C
ATOM     32  CA  GLY    32      -3.225  41.970   1.690  1.00 25.00           C
ATOM     33  CA  ALA    33      -0.793  40.525  -0.876  1.00 25.00           C
ATOM     34  CA  ASP    34       2.723  39.305  -0.162  1.00 25.00           C
ATOM     35  CA  GLY    35       1.822  35.948  -1.750  1.00 25.00           C
ATOM     36  CA  GLY    36       1.507  34.695   1.878  1.00 25.00           C
ATOM     37  CA  ALA    37       0.915  33.297   5.404  1.00 25.00           C
ATOM     38  CA  PRO    38      -0.106  30.558   7.853  1.00 25.00           C
ATOM     39  CA  TYR    39       0.326  31.889  11.432  1.00 25.00           C
ATOM     40  CA  LEU    40      -2.664  29.885  12.661  1.00 25.00           C
ATOM     41  CA  VAL    41      -2.179  27.440  15.543  1.00 25.00           C
ATOM     42  CA  PRO    42       0.826  28.104  17.730  1.00 25.00           C
ATOM     43  CA  LEU    43       1.003  30.344  20.748  1.00 25.00           C
ATOM     44  CA  SER    44      -1.267  33.337  21.257  1.00 25.00           C
ATOM     45  CA  TYR    45      -1.675  36.733  19.668  1.00 25.00           C
ATOM     46  CA  LEU    46      -1.337  39.701  22.088  1.00 25.00           C
ATOM     47  CA  TRP    47      -1.821  38.740  25.772  1.00 25.00           C
ATOM     48  CA  ASP    48      -0.466  39.720  29.189  1.00 25.00           C
ATOM     49  CA  GLY    49       2.051  41.762  27.145  1.00 25.00           C
ATOM     50  CA  GLU    50       3.121  39.123  24.614  1.00 25.00           C
ATOM     51  CA  THR    51       3.127  36.696  21.722  1.00 25.00           C
ATOM     52  CA  PHE    52       2.777  34.582  18.518  1.00 25.00           C
ATOM     53  CA  LEU    53       0.449  33.042  15.944  1.00 25.00           C
ATOM     54  CA  VAL    54      -3.061  31.835  16.794  1.00 25.00           C
ATOM     55  CA  ALA    55      -6.443  30.140  16.053  1.00 25.00           C
ATOM     56  CA  THR    56      -7.042  27.475  13.395  1.00 25.00           C
ATOM     57  CA  PRO    57      -6.400  25.281  10.376  1.00 25.00           C
ATOM     58  CA  ALA    58      -7.971  22.418   8.453  1.00 25.00           C
ATOM     59  CA  ALA    59      -7.041  19.106   6.858  1.00 25.00           C
ATOM     60  CA  SER    60      -8.738  20.600   3.827  1.00 25.00           C
ATOM     61  CA  PRO    61      -6.629  18.688   1.288  1.00 25.00           C
ATOM     62  CA  THR    62      -7.861  18.734  -2.281  1.00 25.00           C
ATOM     63  CA  GLY    63      -9.713  22.060  -1.694  1.00 25.00           C
ATOM     64  CA  ARG    64      -6.451  23.932  -2.166  1.00 25.00           C
ATOM     65  CA  ASN    65      -7.812  26.727   0.092  1.00 25.00           C
ATOM     66  CA  LEU    66      -8.008  25.764   3.808  1.00 25.00           C
ATOM     67  CA  SER    67     -10.836  28.255   3.945  1.00 25.00           C
ATOM     68  CA  GLU    68      -8.887  31.199   2.455  1.00 25.00           C
ATOM     69  CA  THR    69      -5.436  30.583   3.846  1.00 25.00           C
ATOM     70  CA  GLY    70      -5.047  31.434   7.515  1.00 25.00           C
ATOM     71  CA  ARG    71      -3.702  34.678   9.021  1.00 25.00           C
ATOM     72  CA  VAL    72      -3.791  34.953  12.846  1.00 25.00           C
ATOM     73  CA  ARG    73      -6.527  35.503  15.468  1.00 25.00           C
ATOM     74  CA  LEU    74      -6.518  35.202  19.264  1.00 25.00           C
ATOM     75  CA  GLY    75      -6.094  31.788  20.923  1.00 25.00           C
ATOM     76  CA  ILE    76      -4.471  28.300  20.588  1.00 25.00           C
ATOM     77  CA  GLY    77      -5.916  25.595  18.310  1.00 25.00           C
ATOM     78  CA  PRO    78      -6.030  21.795  17.917  1.00 25.00           C
ATOM     79  CA  THR    79      -3.418  19.991  15.821  1.00 25.00           C
ATOM     80  CA  ARG    80      -0.939  22.651  16.936  1.00 25.00           C
ATOM     81  CA  ASP    81       0.388  22.782  13.405  1.00 25.00           C
ATOM     82  CA  LEU    82      -1.099  25.283  11.023  1.00 25.00           C
ATOM     83  CA  VAL    83       2.121  27.144  12.024  1.00 25.00           C
ATOM     84  CA  LEU    84       4.016  29.881  13.778  1.00 25.00           C
ATOM     85  CA  VAL    85       6.197  32.890  14.570  1.00 25.00           C
ATOM     86  CA  GLU    86       8.532  30.226  15.997  1.00 25.00           C
ATOM     87  CA  GLY    87       5.936  30.038  18.678  1.00 25.00           C
ATOM     88  CA  THR    88       6.345  32.016  21.871  1.00 25.00           C
ATOM     89  CA  ALA    89       4.373  31.720  25.084  1.00 25.00           C
ATOM     90  CA  LEU    90       1.267  31.285  27.291  1.00 25.00           C
ATOM     91  CA  PRO    91       1.588  30.262  30.929  1.00 25.00           C
ATOM     92  CA  LEU    92       4.295  27.633  30.441  1.00 25.00           C
ATOM     93  CA  GLU    93       4.290  25.113  33.217  1.00 25.00           C
ATOM     94  CA  PRO    94       2.445  22.286  34.863  1.00 25.00           C
ATOM     95  CA  ALA    95       2.679  20.526  31.501  1.00 25.00           C
ATOM     96  CA  GLY    96       4.176  20.097  28.033  1.00 25.00           C
ATOM     97  CA  LEU    97       3.066  19.734  24.402  1.00 25.00           C
ATOM     98  CA  PRO    98      -0.055  17.679  24.691  1.00 25.00           C
ATOM     99  CA  ASP    99      -2.295  18.234  27.704  1.00 25.00           C
ATOM    100  CA  GLY   100      -4.763  21.170  27.505  1.00 25.00           C
ATOM    101  CA  VAL   101      -3.509  21.797  23.922  1.00 25.00           C
ATOM    102  CA  GLY   102      -0.601  24.189  23.393  1.00 25.00           C
ATOM    103  CA  ASP   103       2.603  25.351  25.074  1.00 25.00           C
ATOM    104  CA  THR   104       5.226  26.643  22.687  1.00 25.00           C
ATOM    105  CA  PHE   105       4.217  24.555  19.683  1.00 25.00           C
ATOM    106  CA  ALA   106       5.072  25.186  16.032  1.00 25.00           C
ATOM    107  CA  GLU   107       7.690  23.271  14.069  1.00 25.00           C
ATOM    108  CA  LYS   108       9.876  20.821  12.171  1.00 25.00           C
ATOM    109  CA  THR   109      10.440  17.515  14.058  1.00 25.00           C
ATOM    110  CA  GLY   110      12.827  19.023  16.605  1.00 25.00           C
ATOM    111  CA  PHE   111      15.054  20.998  14.220  1.00 25.00           C
ATOM    112  CA  ASP   112      18.083  21.554  12.021  1.00 25.00           C
ATOM    113  CA  PRO   113      17.435  25.292  11.489  1.00 25.00           C
ATOM    114  CA  ARG   114      15.954  25.697   7.981  1.00 25.00           C
ATOM    115  CA  ARG   115      14.005  22.428   8.400  1.00 25.00           C
ATOM    116  CA  LEU   116      10.817  21.636   6.480  1.00 25.00           C
ATOM    117  CA  THR   117      11.952  23.860   3.623  1.00 25.00           C
ATOM    118  CA  THR   118      10.680  27.197   4.734  1.00 25.00           C
ATOM    119  CA  SER   119       8.373  28.138   7.592  1.00 25.00           C
ATOM    120  CA  TYR   120       4.890  29.348   8.360  1.00 25.00           C
ATOM    121  CA  LEU   121       5.498  32.979   9.537  1.00 25.00           C
ATOM    122  CA  TYR   122       5.675  36.111  11.633  1.00 25.00           C
ATOM    123  CA  PHE   123       2.408  36.941  13.271  1.00 25.00           C
ATOM    124  CA  ARG   124       0.447  39.344  15.550  1.00 25.00           C
ATOM    125  CA  ILE   125       2.511  40.604  18.505  1.00 25.00           C
ATOM    126  CA  SER   126       1.838  44.293  19.357  1.00 25.00           C
ATOM    127  CA  PRO   127       0.032  47.317  18.038  1.00 25.00           C
ATOM    128  CA  ARG   128      -3.026  47.725  15.770  1.00 25.00           C
ATOM    129  CA  ARG   129      -2.908  43.997  14.899  1.00 25.00           C
ATOM    130  CA  VAL   130      -2.705  43.109  18.619  1.00 25.00           C
ATOM    131  CA  GLN   131      -5.709  45.370  19.348  1.00 25.00           C
ATOM    132  CA  ALA   132      -7.684  43.698  16.524  1.00 25.00           C
ATOM    133  CA  TRP   133      -6.809  40.243  17.926  1.00 25.00           C
ATOM    134  CA  ARG   134      -7.953  41.340  21.411  1.00 25.00           C
ATOM    135  CA  GLU   135     -11.246  42.638  19.948  1.00 25.00           C
ATOM    136  CA  ALA   136     -11.773  39.315  18.120  1.00 25.00           C
ATOM    137  CA  ASN   137     -11.113  37.394  21.367  1.00 25.00           C
ATOM    138  CA  GLU   138     -13.630  39.609  23.217  1.00 25.00           C
ATOM    139  CA  LEU   139     -16.231  38.986  20.477  1.00 25.00           C
ATOM    140  CA  SER   140     -15.625  35.212  20.727  1.00 25.00           C
ATOM    141  CA  GLY   141     -16.050  35.372  24.531  1.00 25.00           C
ATOM    142  CA  ARG   142     -19.323  37.314  24.108  1.00 25.00           C
ATOM    143  CA  GLU   143     -20.577  34.705  21.601  1.00 25.00           C
ATOM    144  CA  LEU   144     -19.683  31.893  24.043  1.00 25.00           C
ATOM    145  CA  MET   145     -17.876  30.152  21.246  1.00 25.00           C
ATOM    146  CA  ARG   146     -19.824  30.337  17.936  1.00 25.00           C
ATOM    147  CA  ASP   147     -20.246  32.276  14.681  1.00 25.00           C
ATOM    148  CA  GLY   148     -17.005  32.940  12.803  1.00 25.00           C
ATOM    149  CA  GLU   149     -13.390  32.181  13.643  1.00 25.00           C
ATOM    150  CA  TRP   150     -10.526  30.627  11.670  1.00 25.00           C
ATOM    151  CA  LEU   151      -8.556  33.669  10.664  1.00 25.00           C
ATOM    152  CA  VAL   152      -7.448  36.245   8.179  1.00 25.00           C
ATOM    153  CA  THR   153      -7.793  39.398  10.268  1.00 25.00           C
ATOM    154  CA  ASP   154      -9.255  42.858  11.062  1.00 25.00           C
TER
END
