
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   30 (  147),  selected   30 , name T0386TS284_1-D2
# Molecule2: number of CA atoms   81 (  636),  selected   81 , name T0386_D2.pdb
# PARAMETERS: T0386TS284_1-D2.T0386_D2.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N     219           -
LGA    -       -      P     220           -
LGA    K     222      E     221          2.433
LGA    I     223      K     222          3.232
LGA    R     224      I     223          3.480
LGA    L     225      R     224          1.952
LGA    -       -      L     225           -
LGA    L     226      L     226          2.282
LGA    K     227      K     227          2.150
LGA    E     228      E     228          1.973
LGA    N     235      F     229          1.942
LGA    T     236      M     230          1.600
LGA    G     237      H     231          3.553
LGA    -       -      T     232           -
LGA    -       -      M     233           -
LGA    R     238      K     234          1.864
LGA    -       -      N     235           -
LGA    N     239      T     236          3.519
LGA    -       -      G     237           -
LGA    V     240      R     238          4.092
LGA    N     241      N     239          2.139
LGA    D     242      V     240           #
LGA    R     243      N     241           -
LGA    P     244      D     242           -
LGA    V     245      -       -           -
LGA    V     247      R     243          4.405
LGA    A     248      -       -           -
LGA    K     249      -       -           -
LGA    E     250      -       -           -
LGA    G     251      -       -           -
LGA    E     252      P     244           #
LGA    T     253      V     245          5.115
LGA    Y     254      M     246           #
LGA    T     255      V     247           #
LGA    Y     258      A     248          2.432
LGA    R     259      K     249          4.085
LGA    -       -      E     250           -
LGA    -       -      G     251           -
LGA    G     260      E     252          3.629
LGA    -       -      T     253           -
LGA    -       -      Y     254           -
LGA    -       -      T     255           -
LGA    -       -      G     256           -
LGA    -       -      T     257           -
LGA    -       -      Y     258           -
LGA    -       -      R     259           -
LGA    -       -      G     260           -
LGA    -       -      A     261           -
LGA    -       -      G     262           -
LGA    -       -      L     263           -
LGA    -       -      E     264           -
LGA    -       -      G     265           -
LGA    -       -      F     266           -
LGA    -       -      A     267           -
LGA    -       -      L     268           -
LGA    -       -      N     269           -
LGA    -       -      V     270           -
LGA    -       -      K     271           -
LGA    -       -      G     272           -
LGA    -       -      A     273           -
LGA    -       -      Y     274           -
LGA    -       -      I     275           -
LGA    -       -      I     276           -
LGA    -       -      G     277           -
LGA    -       -      N     278           -
LGA    -       -      I     279           -
LGA    -       -      D     280           -
LGA    -       -      H     281           -
LGA    -       -      L     282           -
LGA    -       -      P     283           -
LGA    -       -      P     284           -
LGA    -       -      E     285           -
LGA    -       -      Q     286           -
LGA    -       -      L     287           -
LGA    -       -      K     288           -
LGA    -       -      I     289           -
LGA    -       -      L     290           -
LGA    -       -      K     291           -
LGA    -       -      P     292           -
LGA    -       -      G     293           -
LGA    -       -      D     294           -
LGA    -       -      K     295           -
LGA    -       -      I     296           -
LGA    -       -      T     297           -
LGA    -       -      F     298           -
LGA    -       -      T     299           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   30   81    5.0     19    3.11    21.05     16.754     0.592

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.857485 * X  +   0.499406 * Y  +   0.123749 * Z  +  -0.805790
  Y_new =   0.490653 * X  +  -0.866110 * Y  +   0.095462 * Z  + 119.882973
  Z_new =   0.154855 * X  +  -0.021139 * Y  +  -0.987711 * Z  +  73.457779 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.120193    0.021399  [ DEG:  -178.7739      1.2261 ]
  Theta =  -0.155481   -2.986112  [ DEG:    -8.9084   -171.0916 ]
  Phi   =   0.519728   -2.621865  [ DEG:    29.7782   -150.2218 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0386TS284_1-D2                               
REMARK     2: T0386_D2.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0386TS284_1-D2.T0386_D2.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   30   81   5.0   19   3.11   21.05  16.754
REMARK  ---------------------------------------------------------- 
MOLECULE T0386TS284_1-D2
PFRMAT TS
TARGET T0386
MODEL  1
PARENT 2g03_A
ATOM    693  N   LYS   222       0.187  60.106  77.844  1.00  1.50           386
ATOM    694  CA  LYS   222       1.322  59.990  78.804  1.00  1.50           386
ATOM    695  C   LYS   222       2.624  60.397  78.147  1.00  1.50           386
ATOM    696  O   LYS   222       3.405  61.157  78.690  1.00  1.50           386
ATOM    697  CB  LYS   222       1.431  58.569  79.353  1.00  1.50           386
ATOM    698  N   ILE   223       2.847  59.912  76.936  1.00  1.50           386
ATOM    699  CA  ILE   223       4.067  60.238  76.221  1.00  1.50           386
ATOM    700  C   ILE   223       4.163  61.726  75.846  1.00  1.50           386
ATOM    701  O   ILE   223       5.225  62.341  75.975  1.00  1.50           386
ATOM    702  CB  ILE   223       4.201  59.326  74.980  1.00  1.50           386
ATOM    703  N   ARG   224       3.081  62.311  75.350  1.00  1.50           386
ATOM    704  CA  ARG   224       3.090  63.762  75.046  1.00  1.50           386
ATOM    705  C   ARG   224       3.338  64.621  76.274  1.00  1.50           386
ATOM    706  O   ARG   224       4.122  65.561  76.209  1.00  1.50           386
ATOM    707  CB  ARG   224       1.786  64.183  74.362  1.00  1.50           386
ATOM    708  N   LEU   225       4.905  63.754  79.018  1.00  1.50           386
ATOM    709  CA  LEU   225       6.255  63.546  79.506  1.00  1.50           386
ATOM    710  C   LEU   225       7.282  64.212  78.615  1.00  1.50           386
ATOM    711  O   LEU   225       8.206  64.819  79.108  1.00  1.50           386
ATOM    712  CB  LEU   225       6.541  62.038  79.647  1.00  1.50           386
ATOM    713  N   LEU   226       7.168  64.060  77.300  1.00  1.50           386
ATOM    714  CA  LEU   226       8.207  64.620  76.422  1.00  1.50           386
ATOM    715  C   LEU   226       8.095  66.144  76.265  1.00  1.50           386
ATOM    716  O   LEU   226       9.102  66.838  76.230  1.00  1.50           386
ATOM    717  CB  LEU   226       8.246  63.919  75.068  1.00  1.50           386
ATOM    718  N   LYS   227       6.873  66.660  76.207  1.00  1.50           386
ATOM    719  CA  LYS   227       6.642  68.085  76.070  1.00  1.50           386
ATOM    720  C   LYS   227       7.220  68.857  77.247  1.00  1.50           386
ATOM    721  O   LYS   227       7.736  69.944  77.078  1.00  1.50           386
ATOM    722  CB  LYS   227       5.152  68.366  75.926  1.00  1.50           386
ATOM    723  N   GLU   228       7.097  68.293  78.445  1.00  1.50           386
ATOM    724  CA  GLU   228       7.743  68.813  79.658  1.00  1.50           386
ATOM    725  C   GLU   228       9.273  68.875  79.579  1.00  1.50           386
ATOM    726  O   GLU   228       9.916  69.514  80.405  1.00  1.50           386
ATOM    727  CB  GLU   228       7.388  67.889  80.826  1.00  1.50           386
ATOM    728  N   ASN   235       9.854  68.172  78.618  1.00  1.50           386
ATOM    729  CA  ASN   235      11.277  67.968  78.645  1.00  1.50           386
ATOM    730  C   ASN   235      11.950  68.304  77.317  1.00  1.50           386
ATOM    731  O   ASN   235      12.999  67.771  77.017  1.00  1.50           386
ATOM    732  CB  ASN   235      11.585  66.531  79.103  1.00  1.50           386
ATOM    733  N   THR   236      11.372  69.212  76.536  1.00  1.50           386
ATOM    734  CA  THR   236      12.041  69.661  75.315  1.00  1.50           386
ATOM    735  C   THR   236      13.045  70.727  75.696  1.00  1.50           386
ATOM    736  O   THR   236      12.894  71.369  76.739  1.00  1.50           386
ATOM    737  CB  THR   236      11.054  70.188  74.268  1.00  1.50           386
ATOM    738  N   GLY   237      14.079  70.902  74.871  1.00  1.50           386
ATOM    739  CA  GLY   237      15.030  71.996  75.033  1.00  1.50           386
ATOM    740  C   GLY   237      15.338  72.521  73.648  1.00  1.50           386
ATOM    741  O   GLY   237      15.375  71.753  72.700  1.00  1.50           386
ATOM    742  N   ARG   238      15.560  73.821  73.496  1.00  1.50           386
ATOM    743  CA  ARG   238      16.022  74.282  72.196  1.00  1.50           386
ATOM    744  C   ARG   238      17.531  74.419  72.108  1.00  1.50           386
ATOM    745  O   ARG   238      18.050  74.913  71.118  1.00  1.50           386
ATOM    746  CB  ARG   238      15.347  75.581  71.773  1.00  1.50           386
ATOM    747  N   ASN   239      18.228  73.930  73.124  1.00  1.50           386
ATOM    748  CA  ASN   239      19.688  73.951  73.123  1.00  1.50           386
ATOM    749  C   ASN   239      20.169  72.651  72.449  1.00  1.50           386
ATOM    750  O   ASN   239      20.739  71.783  73.102  1.00  1.50           386
ATOM    751  CB  ASN   239      20.153  74.019  74.569  1.00  1.50           386
ATOM    752  N   VAL   240      19.937  72.537  71.142  1.00  1.50           386
ATOM    753  CA  VAL   240      19.912  71.241  70.450  1.00  1.50           386
ATOM    754  C   VAL   240      21.308  70.641  70.225  1.00  1.50           386
ATOM    755  O   VAL   240      21.426  69.443  69.902  1.00  1.50           386
ATOM    756  CB  VAL   240      19.161  71.323  69.080  1.00  1.50           386
ATOM    757  N   ASN   241      22.343  71.462  70.396  1.00  1.50           386
ATOM    758  CA  ASN   241      23.714  71.058  70.104  1.00  1.50           386
ATOM    759  C   ASN   241      24.610  71.118  71.334  1.00  1.50           386
ATOM    760  O   ASN   241      25.824  71.040  71.227  1.00  1.50           386
ATOM    761  CB  ASN   241      24.320  71.942  69.004  1.00  1.50           386
ATOM    762  N   ASP   242      24.000  71.258  72.495  1.00  1.50           386
ATOM    763  CA  ASP   242      24.733  71.326  73.740  1.00  1.50           386
ATOM    764  C   ASP   242      25.365  69.966  74.089  1.00  1.50           386
ATOM    765  O   ASP   242      24.685  68.941  74.110  1.00  1.50           386
ATOM    766  CB  ASP   242      23.790  71.802  74.820  1.00  1.50           386
ATOM    767  N   ARG   243      26.676  69.956  74.322  1.00  1.50           386
ATOM    768  CA  ARG   243      27.397  68.717  74.617  1.00  1.50           386
ATOM    769  C   ARG   243      26.805  67.928  75.805  1.00  1.50           386
ATOM    770  O   ARG   243      26.698  66.708  75.739  1.00  1.50           386
ATOM    771  CB  ARG   243      28.898  68.986  74.815  1.00  1.50           386
ATOM    772  N   PRO   244      26.401  68.619  76.865  1.00  1.50           386
ATOM    773  CA  PRO   244      25.885  67.952  78.049  1.00  1.50           386
ATOM    774  C   PRO   244      24.520  67.297  77.797  1.00  1.50           386
ATOM    775  O   PRO   244      24.271  66.155  78.221  1.00  1.50           386
ATOM    776  CB  PRO   244      25.804  68.931  79.212  1.00  1.50           386
ATOM    777  N   VAL   245      23.638  68.011  77.098  1.00  1.50           386
ATOM    778  CA  VAL   245      22.339  67.477  76.708  1.00  1.50           386
ATOM    779  C   VAL   245      22.520  66.289  75.775  1.00  1.50           386
ATOM    780  O   VAL   245      21.864  65.261  75.953  1.00  1.50           386
ATOM    781  CB  VAL   245      21.436  68.578  76.077  1.00  1.50           386
ATOM    782  N   VAL   247      23.402  66.410  74.784  1.00  1.50           386
ATOM    783  CA  VAL   247      23.639  65.289  73.869  1.00  1.50           386
ATOM    784  C   VAL   247      24.189  64.056  74.638  1.00  1.50           386
ATOM    785  O   VAL   247      23.590  62.986  74.627  1.00  1.50           386
ATOM    786  CB  VAL   247      24.583  65.679  72.701  1.00  1.50           386
ATOM    787  N   ALA   248      25.292  64.219  75.346  1.00  1.50           386
ATOM    788  CA  ALA   248      25.945  63.070  75.961  1.00  1.50           386
ATOM    789  C   ALA   248      25.252  62.455  77.190  1.00  1.50           386
ATOM    790  O   ALA   248      25.223  61.240  77.304  1.00  1.50           386
ATOM    791  CB  ALA   248      27.447  63.338  76.157  1.00  1.50           386
ATOM    792  N   LYS   249      24.700  63.277  78.083  1.00  1.50           386
ATOM    793  CA  LYS   249      23.894  62.761  79.191  1.00  1.50           386
ATOM    794  C   LYS   249      22.614  62.125  78.665  1.00  1.50           386
ATOM    795  O   LYS   249      22.091  61.187  79.273  1.00  1.50           386
ATOM    796  CB  LYS   249      23.567  63.843  80.219  1.00  1.50           386
ATOM    797  N   GLU   250      22.120  62.630  77.531  1.00  1.50           386
ATOM    798  CA  GLU   250      20.963  62.077  76.855  1.00  1.50           386
ATOM    799  C   GLU   250      21.208  60.702  76.268  1.00  1.50           386
ATOM    800  O   GLU   250      20.380  59.810  76.413  1.00  1.50           386
ATOM    801  CB  GLU   250      20.524  63.037  75.747  1.00  1.50           386
ATOM    802  N   GLY   251      22.324  60.536  75.561  1.00  1.50           386
ATOM    803  CA  GLY   251      22.767  59.235  75.060  1.00  1.50           386
ATOM    804  C   GLY   251      22.919  58.235  76.212  1.00  1.50           386
ATOM    805  O   GLY   251      22.473  57.101  76.107  1.00  1.50           386
ATOM    806  N   GLU   252      23.557  58.644  77.301  1.00  1.50           386
ATOM    807  CA  GLU   252      23.637  57.779  78.473  1.00  1.50           386
ATOM    808  C   GLU   252      22.271  57.356  79.023  1.00  1.50           386
ATOM    809  O   GLU   252      22.106  56.212  79.422  1.00  1.50           386
ATOM    810  CB  GLU   252      24.457  58.396  79.582  1.00  1.50           386
ATOM    811  N   THR   253      19.311  57.333  77.326  1.00  1.50           386
ATOM    812  CA  THR   253      18.742  56.498  76.283  1.00  1.50           386
ATOM    813  C   THR   253      19.193  55.036  76.366  1.00  1.50           386
ATOM    814  O   THR   253      18.377  54.111  76.226  1.00  1.50           386
ATOM    815  CB  THR   253      19.125  57.067  74.915  1.00  1.50           386
ATOM    816  N   TYR   254      20.493  54.832  76.569  1.00  1.50           386
ATOM    817  CA  TYR   254      21.086  53.491  76.678  1.00  1.50           386
ATOM    818  C   TYR   254      20.702  52.786  77.981  1.00  1.50           386
ATOM    819  O   TYR   254      20.698  51.544  78.058  1.00  1.50           386
ATOM    820  CB  TYR   254      22.629  53.521  76.464  1.00  1.50           386
ATOM    821  N   THR   255      20.385  53.583  78.998  1.00  1.50           386
ATOM    822  CA  THR   255      19.889  53.066  80.278  1.00  1.50           386
ATOM    823  C   THR   255      18.438  52.509  80.181  1.00  1.50           386
ATOM    824  O   THR   255      18.092  51.541  80.859  1.00  1.50           386
ATOM    825  CB  THR   255      20.002  54.197  81.297  1.00  1.50           386
ATOM    826  N   TYR   258      17.616  53.091  79.310  1.00  1.50           386
ATOM    827  CA  TYR   258      16.215  52.711  79.184  1.00  1.50           386
ATOM    828  C   TYR   258      16.084  51.244  78.852  1.00  1.50           386
ATOM    829  O   TYR   258      15.126  50.590  79.270  1.00  1.50           386
ATOM    830  CB  TYR   258      15.487  53.524  78.125  1.00  1.50           386
ATOM    831  N   ARG   259      17.043  50.696  78.115  1.00  1.50           386
ATOM    832  CA  ARG   259      16.887  49.285  77.754  1.00  1.50           386
ATOM    833  C   ARG   259      18.004  48.407  78.271  1.00  1.50           386
ATOM    834  O   ARG   259      18.243  47.351  77.716  1.00  1.50           386
ATOM    835  CB  ARG   259      16.605  49.067  76.239  1.00  1.50           386
ATOM    836  N   GLY   260      18.641  48.811  79.369  1.00  1.50           386
ATOM    837  CA  GLY   260      19.761  48.047  79.943  1.00  1.50           386
ATOM    838  C   GLY   260      20.167  48.536  81.322  1.00  1.50           386
ATOM    839  O   GLY   260      21.314  48.347  81.764  1.00  1.50           386
TER
END
